AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0524500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524500 MtrunA17_Chr3g0145771 85.507 207 29 1 2 207 10 216 4.32e-125 352
Msa0524500 MtrunA17_Chr3g0139231 72.143 140 33 2 57 193 1 137 7.03e-70 210
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0524500 AT1G02140.1 88.591 149 17 0 59 207 2 150 3.99e-98 281

Find 66 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCACTTGCTTCCATTGT+TGG 0.189002 3_4:+77959849 Msa0524500:three_prime_UTR
TAGTTTCGAGTTTGTCTTCT+TGG 0.210632 3_4:+77959681 Msa0524500:three_prime_UTR
GGTGGAACCAGGTTAATATT+AGG 0.283202 3_4:-77959949 None:intergenic
TTCAAACTTCATTAGCTAAA+GGG 0.324358 3_4:-77959730 None:intergenic
TCCTTTACTACTTCCAAGAT+TGG 0.348725 3_4:+77958995 Msa0524500:CDS
TAAAAGATGCGAAGGCCTTC+AGG 0.353524 3_4:-77959049 None:intergenic
AAAGGTTATCCATTCAAATC+AGG 0.354030 3_4:-77959779 None:intergenic
CAGGAACTTGAGATTGTTAT+GGG 0.355218 3_4:+77958959 Msa0524500:CDS
TGTTGGTGTGGAAGAGAGTA+AGG 0.357291 3_4:+77958418 None:intergenic
TATTAAACTCTGGTGGTTGC+TGG 0.362682 3_4:+77958520 Msa0524500:CDS
TCAGGAACTTGAGATTGTTA+TGG 0.374992 3_4:+77958958 Msa0524500:CDS
GGCGGTTATTGTTGATCATC+AGG 0.409643 3_4:+77958556 Msa0524500:CDS
TTTCAAACTTCATTAGCTAA+AGG 0.412577 3_4:-77959731 None:intergenic
CGACCAACACGGTCTGGTTC+AGG 0.414314 3_4:-77958935 None:intergenic
GAGATACTACGTTGGTCATA+AGG 0.416637 3_4:+77958623 Msa0524500:CDS
GTGGAACCAGGTTAATATTA+GGG 0.417421 3_4:-77959948 None:intergenic
TATCATACAACACTAAATAC+TGG 0.420013 3_4:-77959902 None:intergenic
ATCAACAAGAGAACCAATCT+TGG 0.427300 3_4:-77959008 None:intergenic
TAATAGTGAACATCTTATAT+AGG 0.432174 3_4:-77959660 None:intergenic
ACCAGACCGTGTTGGTCGTC+AGG 0.432239 3_4:+77958940 Msa0524500:CDS
GTTGGTCATAAGGGTAAATT+CGG 0.435065 3_4:+77958633 Msa0524500:CDS
AATATGTATCGGTGATGAAC+AGG 0.447090 3_4:+77959752 Msa0524500:three_prime_UTR
TCGAGTTGGGCCTTTCCACC+AGG 0.453183 3_4:-77958458 None:intergenic
TCCTGACGACCAACACGGTC+TGG 0.460919 3_4:-77958941 None:intergenic
CAGACAGCATGCTCCAACAA+TGG 0.471628 3_4:-77959862 None:intergenic
ATAAACCTCCTTACGAATGA+TGG 0.480860 3_4:-77958733 None:intergenic
GGCTACAAAAGAAGCGGGCC+TGG 0.482296 3_4:+77958440 Msa0524500:CDS
ACCAATCTTGGAAGTAGTAA+AGG 0.483775 3_4:-77958996 None:intergenic
ATCAATCATGTGGTGGAACC+AGG 0.493929 3_4:-77959960 None:intergenic
AGATACTACGTTGGTCATAA+GGG 0.498454 3_4:+77958624 Msa0524500:CDS
TGAAGGAGGATGATAACAAC+TGG 0.499238 3_4:+77958912 Msa0524500:CDS
CCACCACATGATTGATGACA+TGG 0.502437 3_4:+77959967 Msa0524500:three_prime_UTR
AAGAAGCGGGCCTGGTGGAA+AGG 0.505575 3_4:+77958448 Msa0524500:CDS
TCAAACTTCATTAGCTAAAG+GGG 0.509998 3_4:-77959729 None:intergenic
ACAGGAAAACCTGATTTGAA+TGG 0.511064 3_4:+77959770 Msa0524500:three_prime_UTR
GTTGGAGCATGCTGTCTGTA+TGG 0.513636 3_4:+77959867 Msa0524500:three_prime_UTR
GCATAACGAAGCTTACCATC+TGG 0.517649 3_4:-77958684 None:intergenic
TGTTGATCATCAGGATCAGT+AGG 0.531236 3_4:+77958565 Msa0524500:CDS
GATCATCAGGATCAGTAGGA+TGG 0.543475 3_4:+77958569 Msa0524500:CDS
AGTAAGGGCTACAAAAGAAG+CGG 0.544722 3_4:+77958434 Msa0524500:CDS
TCTACTCCCTAATATTAACC+TGG 0.548482 3_4:+77959942 Msa0524500:three_prime_UTR
CGACACTCACGAAGAACAGC+AGG 0.558457 3_4:-77958762 None:intergenic
TCAACAACAACAGATTATGA+AGG 0.558662 3_4:+77958895 Msa0524500:intron
CTCGAACTCATATTAAACTC+TGG 0.562450 3_4:+77958510 Msa0524500:CDS
GAGTTTGAGTTCCGTCCAGA+TGG 0.565284 3_4:+77958669 Msa0524500:CDS
CAAGATAGTAAAAGATGCGA+AGG 0.565769 3_4:-77959057 None:intergenic
ATCATCAGGATCAGTAGGAT+GGG 0.566097 3_4:+77958570 Msa0524500:CDS
CGATACCATCATTCGTAAGG+AGG 0.567991 3_4:+77958728 Msa0524500:CDS
ATGAAGTTTGAAATATGTAT+CGG 0.572232 3_4:+77959741 Msa0524500:three_prime_UTR
AAAGCAAAGATCTGGTACAA+AGG 0.574547 3_4:-77959797 None:intergenic
GTTGGTGTGGAAGAGAGTAA+GGG 0.575855 3_4:+77958419 None:intergenic
AAACGATACCATCATTCGTA+AGG 0.579284 3_4:+77958725 Msa0524500:CDS
GTAAGGGCTACAAAAGAAGC+GGG 0.590136 3_4:+77958435 Msa0524500:CDS
CAAAGCAGTGCTGATCCTGA+AGG 0.593679 3_4:+77959034 Msa0524500:CDS
CCATGTCATCAATCATGTGG+TGG 0.605732 3_4:-77959967 None:intergenic
AACGAAGCTTACCATCTGGA+CGG 0.634567 3_4:-77958680 None:intergenic
AATCCATGTCATCAATCATG+TGG 0.640325 3_4:-77959970 None:intergenic
GTTGCTGGTTGAGAATCGAT+CGG 0.642873 3_4:+77958535 Msa0524500:CDS
ACAACAACAGATTATGAAGG+AGG 0.642882 3_4:+77958898 Msa0524500:intron
CAAGTTCCTGACGACCAACA+CGG 0.649649 3_4:-77958946 None:intergenic
GAACTCATATTAAACTCTGG+TGG 0.652015 3_4:+77958513 Msa0524500:CDS
TACAAAAGAAGCGGGCCTGG+TGG 0.662815 3_4:+77958443 Msa0524500:CDS
TGGCCTGAACCAGACCGTGT+TGG 0.677826 3_4:+77958932 Msa0524500:CDS
GCTGGTTGAGAATCGATCGG+CGG 0.699661 3_4:+77958538 Msa0524500:CDS
TCGTATTATTTCTGACAGCG+AGG 0.703758 3_4:+77958785 Msa0524500:CDS
AGGAACTTGAGATTGTTATG+GGG 0.708397 3_4:+77958960 Msa0524500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTATAAGCAATAATAAAAA+AGG - chr3_4:77958870-77958889 None:intergenic 15.0%
!! TAAAGTATATTTGTGAATTT+AGG - chr3_4:77959213-77959232 None:intergenic 15.0%
!! CAAAAATAATTATAATTAGC+AGG - chr3_4:77959586-77959605 None:intergenic 15.0%
!!! CTAATTATAATTATTTTTGC+AGG + chr3_4:77959587-77959606 Msa0524500:intron 15.0%
!!! ATCTTTGCTTTTTATATTTA+TGG + chr3_4:77959809-77959828 Msa0524500:three_prime_UTR 15.0%
!! GTTATAAGCAATAATAAAAA+AGG - chr3_4:77958870-77958889 None:intergenic 15.0%
!! TAAAGTATATTTGTGAATTT+AGG - chr3_4:77959213-77959232 None:intergenic 15.0%
!! CAAAAATAATTATAATTAGC+AGG - chr3_4:77959586-77959605 None:intergenic 15.0%
!!! CTAATTATAATTATTTTTGC+AGG + chr3_4:77959587-77959606 Msa0524500:intron 15.0%
!!! ATCTTTGCTTTTTATATTTA+TGG + chr3_4:77959809-77959828 Msa0524500:three_prime_UTR 15.0%
!! AATAATAAAAAAGGAAAAGG+GGG - chr3_4:77958861-77958880 None:intergenic 20.0%
!! CAATAATAAAAAAGGAAAAG+GGG - chr3_4:77958862-77958881 None:intergenic 20.0%
!! GCAATAATAAAAAAGGAAAA+GGG - chr3_4:77958863-77958882 None:intergenic 20.0%
!! AGCAATAATAAAAAAGGAAA+AGG - chr3_4:77958864-77958883 None:intergenic 20.0%
!! AATACAGTCAAAAAATCATA+GGG - chr3_4:77959462-77959481 None:intergenic 20.0%
!! AAATACAGTCAAAAAATCAT+AGG - chr3_4:77959463-77959482 None:intergenic 20.0%
!! TAATAGTGAACATCTTATAT+AGG - chr3_4:77959663-77959682 None:intergenic 20.0%
!!! ATGAAGTTTGAAATATGTAT+CGG + chr3_4:77959741-77959760 Msa0524500:three_prime_UTR 20.0%
!! AAATATAAAAAGCAAAGATC+TGG - chr3_4:77959808-77959827 None:intergenic 20.0%
!!! GCTTTTTATATTTATGGTTT+TGG + chr3_4:77959815-77959834 Msa0524500:three_prime_UTR 20.0%
!! AATAATAAAAAAGGAAAAGG+GGG - chr3_4:77958861-77958880 None:intergenic 20.0%
!! CAATAATAAAAAAGGAAAAG+GGG - chr3_4:77958862-77958881 None:intergenic 20.0%
!! GCAATAATAAAAAAGGAAAA+GGG - chr3_4:77958863-77958882 None:intergenic 20.0%
!! AGCAATAATAAAAAAGGAAA+AGG - chr3_4:77958864-77958883 None:intergenic 20.0%
!! AATACAGTCAAAAAATCATA+GGG - chr3_4:77959462-77959481 None:intergenic 20.0%
!! AAATACAGTCAAAAAATCAT+AGG - chr3_4:77959463-77959482 None:intergenic 20.0%
!! TAATAGTGAACATCTTATAT+AGG - chr3_4:77959663-77959682 None:intergenic 20.0%
!!! ATGAAGTTTGAAATATGTAT+CGG + chr3_4:77959741-77959760 Msa0524500:three_prime_UTR 20.0%
!! AAATATAAAAAGCAAAGATC+TGG - chr3_4:77959808-77959827 None:intergenic 20.0%
!!! GCTTTTTATATTTATGGTTT+TGG + chr3_4:77959815-77959834 Msa0524500:three_prime_UTR 20.0%
!! TAAATTCGGACATGAATTTT+TGG + chr3_4:77958647-77958666 Msa0524500:CDS 25.0%
! ATAATAAAAAAGGAAAAGGG+GGG - chr3_4:77958860-77958879 None:intergenic 25.0%
! TTTGGTATGCTTAAATTTGA+AGG - chr3_4:77959103-77959122 None:intergenic 25.0%
!! AATTTGAGTTAAGTTCATGA+AGG - chr3_4:77959148-77959167 None:intergenic 25.0%
! TATATTTGTGAATTTAGGCA+TGG - chr3_4:77959208-77959227 None:intergenic 25.0%
! CACAAATATACTTTAGACAA+TGG + chr3_4:77959218-77959237 Msa0524500:intron 25.0%
! TCATATATTGATACTTTAGC+TGG + chr3_4:77959243-77959262 Msa0524500:intron 25.0%
! CATATATTGATACTTTAGCT+GGG + chr3_4:77959244-77959263 Msa0524500:intron 25.0%
! TTTCAATATAGCTGATGTAA+TGG + chr3_4:77959268-77959287 Msa0524500:intron 25.0%
! CAGTAAAAAAATAACAGCAA+AGG - chr3_4:77959321-77959340 None:intergenic 25.0%
! ATACAGTCAAAAAATCATAG+GGG - chr3_4:77959461-77959480 None:intergenic 25.0%
! CATCAAACAAATCTTGTATT+GGG - chr3_4:77959540-77959559 None:intergenic 25.0%
! ACATCAAACAAATCTTGTAT+TGG - chr3_4:77959541-77959560 None:intergenic 25.0%
! TTCAAACTTCATTAGCTAAA+GGG - chr3_4:77959733-77959752 None:intergenic 25.0%
! TTTCAAACTTCATTAGCTAA+AGG - chr3_4:77959734-77959753 None:intergenic 25.0%
! TATCATACAACACTAAATAC+TGG - chr3_4:77959905-77959924 None:intergenic 25.0%
!! TAAATTCGGACATGAATTTT+TGG + chr3_4:77958647-77958666 Msa0524500:CDS 25.0%
! ATAATAAAAAAGGAAAAGGG+GGG - chr3_4:77958860-77958879 None:intergenic 25.0%
! TTTGGTATGCTTAAATTTGA+AGG - chr3_4:77959103-77959122 None:intergenic 25.0%
!! AATTTGAGTTAAGTTCATGA+AGG - chr3_4:77959148-77959167 None:intergenic 25.0%
! TATATTTGTGAATTTAGGCA+TGG - chr3_4:77959208-77959227 None:intergenic 25.0%
! CACAAATATACTTTAGACAA+TGG + chr3_4:77959218-77959237 Msa0524500:intron 25.0%
! TCATATATTGATACTTTAGC+TGG + chr3_4:77959243-77959262 Msa0524500:intron 25.0%
! CATATATTGATACTTTAGCT+GGG + chr3_4:77959244-77959263 Msa0524500:intron 25.0%
! TTTCAATATAGCTGATGTAA+TGG + chr3_4:77959268-77959287 Msa0524500:intron 25.0%
! CAGTAAAAAAATAACAGCAA+AGG - chr3_4:77959321-77959340 None:intergenic 25.0%
! ATACAGTCAAAAAATCATAG+GGG - chr3_4:77959461-77959480 None:intergenic 25.0%
! CATCAAACAAATCTTGTATT+GGG - chr3_4:77959540-77959559 None:intergenic 25.0%
! ACATCAAACAAATCTTGTAT+TGG - chr3_4:77959541-77959560 None:intergenic 25.0%
! TTCAAACTTCATTAGCTAAA+GGG - chr3_4:77959733-77959752 None:intergenic 25.0%
! TTTCAAACTTCATTAGCTAA+AGG - chr3_4:77959734-77959753 None:intergenic 25.0%
! TATCATACAACACTAAATAC+TGG - chr3_4:77959905-77959924 None:intergenic 25.0%
! TTTTACTTGAGATACTACGT+TGG + chr3_4:77958615-77958634 Msa0524500:CDS 30.0%
!! GATGGTATCGTTTTTGTAAT+TGG - chr3_4:77958718-77958737 None:intergenic 30.0%
TCAACAACAACAGATTATGA+AGG + chr3_4:77958895-77958914 Msa0524500:intron 30.0%
! CATCTTTTACTATCTTGTTC+AGG + chr3_4:77959063-77959082 Msa0524500:CDS 30.0%
TAACTCAAATTAAACTGACC+TGG + chr3_4:77959157-77959176 Msa0524500:intron 30.0%
AATGATATATGTAAGTTGCC+AGG - chr3_4:77959178-77959197 None:intergenic 30.0%
ACAAAATGACAACACATCAT+GGG - chr3_4:77959372-77959391 None:intergenic 30.0%
AACAAAATGACAACACATCA+TGG - chr3_4:77959373-77959392 None:intergenic 30.0%
!!! TGCTTGTATTTTTTAGCCTT+TGG + chr3_4:77959394-77959413 Msa0524500:intron 30.0%
!!! GCTTGTATTTTTTAGCCTTT+GGG + chr3_4:77959395-77959414 Msa0524500:intron 30.0%
TCAAACTTCATTAGCTAAAG+GGG - chr3_4:77959732-77959751 None:intergenic 30.0%
AAAGGTTATCCATTCAAATC+AGG - chr3_4:77959782-77959801 None:intergenic 30.0%
!!! GGATTTTAAAATCAAGCTCT+TGG + chr3_4:77959988-77960007 Msa0524500:three_prime_UTR 30.0%
! TTTTACTTGAGATACTACGT+TGG + chr3_4:77958615-77958634 Msa0524500:CDS 30.0%
!! GATGGTATCGTTTTTGTAAT+TGG - chr3_4:77958718-77958737 None:intergenic 30.0%
TCAACAACAACAGATTATGA+AGG + chr3_4:77958895-77958914 Msa0524500:intron 30.0%
! CATCTTTTACTATCTTGTTC+AGG + chr3_4:77959063-77959082 Msa0524500:CDS 30.0%
TAACTCAAATTAAACTGACC+TGG + chr3_4:77959157-77959176 Msa0524500:intron 30.0%
AATGATATATGTAAGTTGCC+AGG - chr3_4:77959178-77959197 None:intergenic 30.0%
ACAAAATGACAACACATCAT+GGG - chr3_4:77959372-77959391 None:intergenic 30.0%
AACAAAATGACAACACATCA+TGG - chr3_4:77959373-77959392 None:intergenic 30.0%
!!! TGCTTGTATTTTTTAGCCTT+TGG + chr3_4:77959394-77959413 Msa0524500:intron 30.0%
!!! GCTTGTATTTTTTAGCCTTT+GGG + chr3_4:77959395-77959414 Msa0524500:intron 30.0%
TCAAACTTCATTAGCTAAAG+GGG - chr3_4:77959732-77959751 None:intergenic 30.0%
AAAGGTTATCCATTCAAATC+AGG - chr3_4:77959782-77959801 None:intergenic 30.0%
!!! GGATTTTAAAATCAAGCTCT+TGG + chr3_4:77959988-77960007 Msa0524500:three_prime_UTR 30.0%
!! CTCTTTTTCTTGTTCGAGTT+GGG - chr3_4:77958474-77958493 None:intergenic 35.0%
! TCTCTTTTTCTTGTTCGAGT+TGG - chr3_4:77958475-77958494 None:intergenic 35.0%
CTCGAACTCATATTAAACTC+TGG + chr3_4:77958510-77958529 Msa0524500:CDS 35.0%
GAACTCATATTAAACTCTGG+TGG + chr3_4:77958513-77958532 Msa0524500:CDS 35.0%
AGATACTACGTTGGTCATAA+GGG + chr3_4:77958624-77958643 Msa0524500:CDS 35.0%
GTTGGTCATAAGGGTAAATT+CGG + chr3_4:77958633-77958652 Msa0524500:CDS 35.0%
AAACGATACCATCATTCGTA+AGG + chr3_4:77958725-77958744 Msa0524500:CDS 35.0%
ATAAACCTCCTTACGAATGA+TGG - chr3_4:77958736-77958755 None:intergenic 35.0%
ACAACAACAGATTATGAAGG+AGG + chr3_4:77958898-77958917 Msa0524500:intron 35.0%
TCAGGAACTTGAGATTGTTA+TGG + chr3_4:77958958-77958977 Msa0524500:CDS 35.0%
CAGGAACTTGAGATTGTTAT+GGG + chr3_4:77958959-77958978 Msa0524500:CDS 35.0%
AGGAACTTGAGATTGTTATG+GGG + chr3_4:77958960-77958979 Msa0524500:CDS 35.0%
TCCTTTACTACTTCCAAGAT+TGG + chr3_4:77958995-77959014 Msa0524500:CDS 35.0%
ACCAATCTTGGAAGTAGTAA+AGG - chr3_4:77958999-77959018 None:intergenic 35.0%
ATCAACAAGAGAACCAATCT+TGG - chr3_4:77959011-77959030 None:intergenic 35.0%
CAAGATAGTAAAAGATGCGA+AGG - chr3_4:77959060-77959079 None:intergenic 35.0%
! TATCTGTGCTTAAGCAGTTT+TGG - chr3_4:77959121-77959140 None:intergenic 35.0%
! TTTACTGTATTTCTGCAGAG+TGG + chr3_4:77959334-77959353 Msa0524500:intron 35.0%
AAAATGACAACACATCATGG+GGG - chr3_4:77959370-77959389 None:intergenic 35.0%
CAAAATGACAACACATCATG+GGG - chr3_4:77959371-77959390 None:intergenic 35.0%
!!! TTTTTTAGCCTTTGGGATCA+TGG + chr3_4:77959402-77959421 Msa0524500:intron 35.0%
AGTGGAAAAAATCACAGCAA+AGG - chr3_4:77959430-77959449 None:intergenic 35.0%
ATCATAGGGGAATAACTAAG+TGG - chr3_4:77959448-77959467 None:intergenic 35.0%
TCTTGTATTGGGTGACTAAT+GGG - chr3_4:77959529-77959548 None:intergenic 35.0%
ATCTTGTATTGGGTGACTAA+TGG - chr3_4:77959530-77959549 None:intergenic 35.0%
AATTAGCAGGAATGAACCAA+AGG - chr3_4:77959573-77959592 None:intergenic 35.0%
!! TAGTTTCGAGTTTGTCTTCT+TGG + chr3_4:77959681-77959700 Msa0524500:three_prime_UTR 35.0%
! AATATGTATCGGTGATGAAC+AGG + chr3_4:77959752-77959771 Msa0524500:three_prime_UTR 35.0%
! ACAGGAAAACCTGATTTGAA+TGG + chr3_4:77959770-77959789 Msa0524500:three_prime_UTR 35.0%
AAAGCAAAGATCTGGTACAA+AGG - chr3_4:77959800-77959819 None:intergenic 35.0%
TCTACTCCCTAATATTAACC+TGG + chr3_4:77959942-77959961 Msa0524500:three_prime_UTR 35.0%
GTGGAACCAGGTTAATATTA+GGG - chr3_4:77959951-77959970 None:intergenic 35.0%
AATCCATGTCATCAATCATG+TGG - chr3_4:77959973-77959992 None:intergenic 35.0%
!! CTCTTTTTCTTGTTCGAGTT+GGG - chr3_4:77958474-77958493 None:intergenic 35.0%
! TCTCTTTTTCTTGTTCGAGT+TGG - chr3_4:77958475-77958494 None:intergenic 35.0%
CTCGAACTCATATTAAACTC+TGG + chr3_4:77958510-77958529 Msa0524500:CDS 35.0%
GAACTCATATTAAACTCTGG+TGG + chr3_4:77958513-77958532 Msa0524500:CDS 35.0%
AGATACTACGTTGGTCATAA+GGG + chr3_4:77958624-77958643 Msa0524500:CDS 35.0%
GTTGGTCATAAGGGTAAATT+CGG + chr3_4:77958633-77958652 Msa0524500:CDS 35.0%
AAACGATACCATCATTCGTA+AGG + chr3_4:77958725-77958744 Msa0524500:CDS 35.0%
ATAAACCTCCTTACGAATGA+TGG - chr3_4:77958736-77958755 None:intergenic 35.0%
ACAACAACAGATTATGAAGG+AGG + chr3_4:77958898-77958917 Msa0524500:intron 35.0%
TCAGGAACTTGAGATTGTTA+TGG + chr3_4:77958958-77958977 Msa0524500:CDS 35.0%
CAGGAACTTGAGATTGTTAT+GGG + chr3_4:77958959-77958978 Msa0524500:CDS 35.0%
AGGAACTTGAGATTGTTATG+GGG + chr3_4:77958960-77958979 Msa0524500:CDS 35.0%
TCCTTTACTACTTCCAAGAT+TGG + chr3_4:77958995-77959014 Msa0524500:CDS 35.0%
ACCAATCTTGGAAGTAGTAA+AGG - chr3_4:77958999-77959018 None:intergenic 35.0%
ATCAACAAGAGAACCAATCT+TGG - chr3_4:77959011-77959030 None:intergenic 35.0%
CAAGATAGTAAAAGATGCGA+AGG - chr3_4:77959060-77959079 None:intergenic 35.0%
! TATCTGTGCTTAAGCAGTTT+TGG - chr3_4:77959121-77959140 None:intergenic 35.0%
! TTTACTGTATTTCTGCAGAG+TGG + chr3_4:77959334-77959353 Msa0524500:intron 35.0%
AAAATGACAACACATCATGG+GGG - chr3_4:77959370-77959389 None:intergenic 35.0%
CAAAATGACAACACATCATG+GGG - chr3_4:77959371-77959390 None:intergenic 35.0%
!!! TTTTTTAGCCTTTGGGATCA+TGG + chr3_4:77959402-77959421 Msa0524500:intron 35.0%
AGTGGAAAAAATCACAGCAA+AGG - chr3_4:77959430-77959449 None:intergenic 35.0%
ATCATAGGGGAATAACTAAG+TGG - chr3_4:77959448-77959467 None:intergenic 35.0%
TCTTGTATTGGGTGACTAAT+GGG - chr3_4:77959529-77959548 None:intergenic 35.0%
ATCTTGTATTGGGTGACTAA+TGG - chr3_4:77959530-77959549 None:intergenic 35.0%
AATTAGCAGGAATGAACCAA+AGG - chr3_4:77959573-77959592 None:intergenic 35.0%
!! TAGTTTCGAGTTTGTCTTCT+TGG + chr3_4:77959681-77959700 Msa0524500:three_prime_UTR 35.0%
! AATATGTATCGGTGATGAAC+AGG + chr3_4:77959752-77959771 Msa0524500:three_prime_UTR 35.0%
! ACAGGAAAACCTGATTTGAA+TGG + chr3_4:77959770-77959789 Msa0524500:three_prime_UTR 35.0%
AAAGCAAAGATCTGGTACAA+AGG - chr3_4:77959800-77959819 None:intergenic 35.0%
TCTACTCCCTAATATTAACC+TGG + chr3_4:77959942-77959961 Msa0524500:three_prime_UTR 35.0%
GTGGAACCAGGTTAATATTA+GGG - chr3_4:77959951-77959970 None:intergenic 35.0%
AATCCATGTCATCAATCATG+TGG - chr3_4:77959973-77959992 None:intergenic 35.0%
AGTAAGGGCTACAAAAGAAG+CGG + chr3_4:77958434-77958453 Msa0524500:CDS 40.0%
TATTAAACTCTGGTGGTTGC+TGG + chr3_4:77958520-77958539 Msa0524500:CDS 40.0%
TGTTGATCATCAGGATCAGT+AGG + chr3_4:77958565-77958584 Msa0524500:CDS 40.0%
ATCATCAGGATCAGTAGGAT+GGG + chr3_4:77958570-77958589 Msa0524500:CDS 40.0%
GAGATACTACGTTGGTCATA+AGG + chr3_4:77958623-77958642 Msa0524500:CDS 40.0%
!! TCGTATTATTTCTGACAGCG+AGG + chr3_4:77958785-77958804 Msa0524500:CDS 40.0%
TGAAGGAGGATGATAACAAC+TGG + chr3_4:77958912-77958931 Msa0524500:CDS 40.0%
TGTGAATTTAGGCATGGTGA+TGG - chr3_4:77959202-77959221 None:intergenic 40.0%
TTGATGTCAGCTTATGCCTT+TGG + chr3_4:77959554-77959573 Msa0524500:intron 40.0%
CTTTCACTTGCTTCCATTGT+TGG + chr3_4:77959849-77959868 Msa0524500:three_prime_UTR 40.0%
GGTGGAACCAGGTTAATATT+AGG - chr3_4:77959952-77959971 None:intergenic 40.0%
AGTAAGGGCTACAAAAGAAG+CGG + chr3_4:77958434-77958453 Msa0524500:CDS 40.0%
TATTAAACTCTGGTGGTTGC+TGG + chr3_4:77958520-77958539 Msa0524500:CDS 40.0%
TGTTGATCATCAGGATCAGT+AGG + chr3_4:77958565-77958584 Msa0524500:CDS 40.0%
ATCATCAGGATCAGTAGGAT+GGG + chr3_4:77958570-77958589 Msa0524500:CDS 40.0%
GAGATACTACGTTGGTCATA+AGG + chr3_4:77958623-77958642 Msa0524500:CDS 40.0%
!! TCGTATTATTTCTGACAGCG+AGG + chr3_4:77958785-77958804 Msa0524500:CDS 40.0%
TGAAGGAGGATGATAACAAC+TGG + chr3_4:77958912-77958931 Msa0524500:CDS 40.0%
TGTGAATTTAGGCATGGTGA+TGG - chr3_4:77959202-77959221 None:intergenic 40.0%
TTGATGTCAGCTTATGCCTT+TGG + chr3_4:77959554-77959573 Msa0524500:intron 40.0%
CTTTCACTTGCTTCCATTGT+TGG + chr3_4:77959849-77959868 Msa0524500:three_prime_UTR 40.0%
GGTGGAACCAGGTTAATATT+AGG - chr3_4:77959952-77959971 None:intergenic 40.0%
GTAAGGGCTACAAAAGAAGC+GGG + chr3_4:77958435-77958454 Msa0524500:CDS 45.0%
! GTTGCTGGTTGAGAATCGAT+CGG + chr3_4:77958535-77958554 Msa0524500:CDS 45.0%
GGCGGTTATTGTTGATCATC+AGG + chr3_4:77958556-77958575 Msa0524500:CDS 45.0%
GATCATCAGGATCAGTAGGA+TGG + chr3_4:77958569-77958588 Msa0524500:CDS 45.0%
AACGAAGCTTACCATCTGGA+CGG - chr3_4:77958683-77958702 None:intergenic 45.0%
GCATAACGAAGCTTACCATC+TGG - chr3_4:77958687-77958706 None:intergenic 45.0%
CGATACCATCATTCGTAAGG+AGG + chr3_4:77958728-77958747 Msa0524500:CDS 45.0%
GGAAAAGGGGGGTGAAATTA+GGG - chr3_4:77958849-77958868 None:intergenic 45.0%
AGGAAAAGGGGGGTGAAATT+AGG - chr3_4:77958850-77958869 None:intergenic 45.0%
TAAAAGATGCGAAGGCCTTC+AGG - chr3_4:77959052-77959071 None:intergenic 45.0%
CAAAGGAACCATGATCCCAA+AGG - chr3_4:77959413-77959432 None:intergenic 45.0%
! ATCAATCATGTGGTGGAACC+AGG - chr3_4:77959963-77959982 None:intergenic 45.0%
CCATGTCATCAATCATGTGG+TGG - chr3_4:77959970-77959989 None:intergenic 45.0%
! CCACCACATGATTGATGACA+TGG + chr3_4:77959967-77959986 Msa0524500:three_prime_UTR 45.0%
GTAAGGGCTACAAAAGAAGC+GGG + chr3_4:77958435-77958454 Msa0524500:CDS 45.0%
! GTTGCTGGTTGAGAATCGAT+CGG + chr3_4:77958535-77958554 Msa0524500:CDS 45.0%
GGCGGTTATTGTTGATCATC+AGG + chr3_4:77958556-77958575 Msa0524500:CDS 45.0%
GATCATCAGGATCAGTAGGA+TGG + chr3_4:77958569-77958588 Msa0524500:CDS 45.0%
AACGAAGCTTACCATCTGGA+CGG - chr3_4:77958683-77958702 None:intergenic 45.0%
GCATAACGAAGCTTACCATC+TGG - chr3_4:77958687-77958706 None:intergenic 45.0%
CGATACCATCATTCGTAAGG+AGG + chr3_4:77958728-77958747 Msa0524500:CDS 45.0%
GGAAAAGGGGGGTGAAATTA+GGG - chr3_4:77958849-77958868 None:intergenic 45.0%
AGGAAAAGGGGGGTGAAATT+AGG - chr3_4:77958850-77958869 None:intergenic 45.0%
TAAAAGATGCGAAGGCCTTC+AGG - chr3_4:77959052-77959071 None:intergenic 45.0%
CAAAGGAACCATGATCCCAA+AGG - chr3_4:77959413-77959432 None:intergenic 45.0%
! ATCAATCATGTGGTGGAACC+AGG - chr3_4:77959963-77959982 None:intergenic 45.0%
CCATGTCATCAATCATGTGG+TGG - chr3_4:77959970-77959989 None:intergenic 45.0%
! CCACCACATGATTGATGACA+TGG + chr3_4:77959967-77959986 Msa0524500:three_prime_UTR 45.0%
! GAGTTTGAGTTCCGTCCAGA+TGG + chr3_4:77958669-77958688 Msa0524500:CDS 50.0%
GGGGGGTGAAATTAGGGTTA+GGG - chr3_4:77958843-77958862 None:intergenic 50.0%
AGGGGGGTGAAATTAGGGTT+AGG - chr3_4:77958844-77958863 None:intergenic 50.0%
CAAGTTCCTGACGACCAACA+CGG - chr3_4:77958949-77958968 None:intergenic 50.0%
!! CAAAGCAGTGCTGATCCTGA+AGG + chr3_4:77959034-77959053 Msa0524500:CDS 50.0%
! GTATTGGGTGACTAATGGGC+AGG - chr3_4:77959525-77959544 None:intergenic 50.0%
CAGACAGCATGCTCCAACAA+TGG - chr3_4:77959865-77959884 None:intergenic 50.0%
GTTGGAGCATGCTGTCTGTA+TGG + chr3_4:77959867-77959886 Msa0524500:three_prime_UTR 50.0%
! GAGTTTGAGTTCCGTCCAGA+TGG + chr3_4:77958669-77958688 Msa0524500:CDS 50.0%
GGGGGGTGAAATTAGGGTTA+GGG - chr3_4:77958843-77958862 None:intergenic 50.0%
AGGGGGGTGAAATTAGGGTT+AGG - chr3_4:77958844-77958863 None:intergenic 50.0%
CAAGTTCCTGACGACCAACA+CGG - chr3_4:77958949-77958968 None:intergenic 50.0%
!! CAAAGCAGTGCTGATCCTGA+AGG + chr3_4:77959034-77959053 Msa0524500:CDS 50.0%
! GTATTGGGTGACTAATGGGC+AGG - chr3_4:77959525-77959544 None:intergenic 50.0%
CAGACAGCATGCTCCAACAA+TGG - chr3_4:77959865-77959884 None:intergenic 50.0%
GTTGGAGCATGCTGTCTGTA+TGG + chr3_4:77959867-77959886 Msa0524500:three_prime_UTR 50.0%
TACAAAAGAAGCGGGCCTGG+TGG + chr3_4:77958443-77958462 Msa0524500:CDS 55.0%
GCTGGTTGAGAATCGATCGG+CGG + chr3_4:77958538-77958557 Msa0524500:CDS 55.0%
CGACACTCACGAAGAACAGC+AGG - chr3_4:77958765-77958784 None:intergenic 55.0%
TACAAAAGAAGCGGGCCTGG+TGG + chr3_4:77958443-77958462 Msa0524500:CDS 55.0%
GCTGGTTGAGAATCGATCGG+CGG + chr3_4:77958538-77958557 Msa0524500:CDS 55.0%
CGACACTCACGAAGAACAGC+AGG - chr3_4:77958765-77958784 None:intergenic 55.0%
GGCTACAAAAGAAGCGGGCC+TGG + chr3_4:77958440-77958459 Msa0524500:CDS 60.0%
AAGAAGCGGGCCTGGTGGAA+AGG + chr3_4:77958448-77958467 Msa0524500:CDS 60.0%
!! TCGAGTTGGGCCTTTCCACC+AGG - chr3_4:77958461-77958480 None:intergenic 60.0%
TGGCCTGAACCAGACCGTGT+TGG + chr3_4:77958932-77958951 Msa0524500:CDS 60.0%
! CGACCAACACGGTCTGGTTC+AGG - chr3_4:77958938-77958957 None:intergenic 60.0%
! ACCAGACCGTGTTGGTCGTC+AGG + chr3_4:77958940-77958959 Msa0524500:CDS 60.0%
TCCTGACGACCAACACGGTC+TGG - chr3_4:77958944-77958963 None:intergenic 60.0%
! TGGGTGACTAATGGGCAGGC+AGG - chr3_4:77959521-77959540 None:intergenic 60.0%
GGCTACAAAAGAAGCGGGCC+TGG + chr3_4:77958440-77958459 Msa0524500:CDS 60.0%
AAGAAGCGGGCCTGGTGGAA+AGG + chr3_4:77958448-77958467 Msa0524500:CDS 60.0%
!! TCGAGTTGGGCCTTTCCACC+AGG - chr3_4:77958461-77958480 None:intergenic 60.0%
TGGCCTGAACCAGACCGTGT+TGG + chr3_4:77958932-77958951 Msa0524500:CDS 60.0%
! CGACCAACACGGTCTGGTTC+AGG - chr3_4:77958938-77958957 None:intergenic 60.0%
! ACCAGACCGTGTTGGTCGTC+AGG + chr3_4:77958940-77958959 Msa0524500:CDS 60.0%
TCCTGACGACCAACACGGTC+TGG - chr3_4:77958944-77958963 None:intergenic 60.0%
! TGGGTGACTAATGGGCAGGC+AGG - chr3_4:77959521-77959540 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 77958420 77960014 77958420 ID=Msa0524500;Name=Msa0524500
chr3_4 mRNA 77958420 77960014 77958420 ID=Msa0524500-mRNA-1;Parent=Msa0524500;Name=Msa0524500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.66|1|1|1|3|346|207
chr3_4 exon 77958420 77958806 77958420 ID=Msa0524500-mRNA-1:exon:22942;Parent=Msa0524500-mRNA-1
chr3_4 exon 77958908 77959084 77958908 ID=Msa0524500-mRNA-1:exon:22943;Parent=Msa0524500-mRNA-1
chr3_4 exon 77959609 77960014 77959609 ID=Msa0524500-mRNA-1:exon:22944;Parent=Msa0524500-mRNA-1
chr3_4 CDS 77958420 77958806 77958420 ID=Msa0524500-mRNA-1:cds;Parent=Msa0524500-mRNA-1
chr3_4 CDS 77958908 77959084 77958908 ID=Msa0524500-mRNA-1:cds;Parent=Msa0524500-mRNA-1
chr3_4 CDS 77959609 77959668 77959609 ID=Msa0524500-mRNA-1:cds;Parent=Msa0524500-mRNA-1
chr3_4 three_prime_UTR 77959669 77960014 77959669 ID=Msa0524500-mRNA-1:three_prime_utr;Parent=Msa0524500-mRNA-1
Gene Sequence

>Msa0524500

TTGGTGTGGAAGAGAGTAAGGGCTACAAAAGAAGCGGGCCTGGTGGAAAGGCCCAACTCGAACAAGAAAAAGAGAAGAGAAGAAGAAGAACTCGAACTCATATTAAACTCTGGTGGTTGCTGGTTGAGAATCGATCGGCGGTTATTGTTGATCATCAGGATCAGTAGGATGGGAAGCGAAGAAGAGAATGCAGAGTTTTACTTGAGATACTACGTTGGTCATAAGGGTAAATTCGGACATGAATTTTTGGAGTTTGAGTTCCGTCCAGATGGTAAGCTTCGTTATGCTAACAATTCCAATTACAAAAACGATACCATCATTCGTAAGGAGGTTTATCTTACTCCTGCTGTTCTTCGTGAGTGTCGTCGTATTATTTCTGACAGCGAGATTATGAAGGAGGATGATAACAACTGGCCTGAACCAGACCGTGTTGGTCGTCAGGAACTTGAGATTGTTATGGGGAATGAGCATATCTCCTTTACTACTTCCAAGATTGGTTCTCTTGTTGATGTTCAAAGCAGTGCTGATCCTGAAGGCCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATATAA

Protein sequence

>Msa0524500

LVWKRVRATKEAGLVERPNSNKKKRREEEELELILNSGGCWLRIDRRLLLIIRISRMGSEEENAEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIISDSEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI*