Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149060 | XP_003588683.2 | 96.217 | 423 | 15 | 1 | 1 | 423 | 1 | 422 | 0.0 | 836 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149060 | sp|Q147G5|CCA22_ARATH | 51.756 | 427 | 171 | 6 | 14 | 423 | 26 | 434 | 3.47e-136 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149060 | G7I6A9 | 96.217 | 423 | 15 | 1 | 1 | 423 | 1 | 422 | 0.0 | 836 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043240 | Msa0149060 | -0.802185 | 6.323601e-49 | -8.615850e-47 |
| Msa0149060 | Msa0170680 | 0.801266 | 9.763439e-49 | -8.615850e-47 |
| Msa0149060 | Msa0227490 | 0.823771 | 1.157406e-53 | -8.615850e-47 |
| Msa0149060 | Msa0227500 | 0.813232 | 2.840868e-51 | -8.615850e-47 |
| Msa0149060 | Msa0298970 | 0.813583 | 2.378964e-51 | -8.615850e-47 |
| Msa0149060 | Msa0301180 | 0.820888 | 5.406627e-53 | -8.615850e-47 |
| Msa0149060 | Msa0320540 | 0.834700 | 2.576094e-56 | -8.615850e-47 |
| Msa0149060 | Msa0331780 | 0.801444 | 8.979660e-49 | -8.615850e-47 |
| Msa0149060 | Msa0344070 | 0.836340 | 9.910617e-57 | -8.615850e-47 |
| Msa0149060 | Msa0352200 | 0.802580 | 5.244349e-49 | -8.615850e-47 |
| Msa0149060 | Msa0413740 | 0.807467 | 4.982529e-50 | -8.615850e-47 |
| Msa0149060 | Msa0505390 | 0.803077 | 4.139776e-49 | -8.615850e-47 |
| Msa0149060 | Msa0820670 | 0.818451 | 1.946984e-52 | -8.615850e-47 |
| Msa0149060 | Msa1149760 | 0.802043 | 6.766390e-49 | -8.615850e-47 |
| Msa0149060 | Msa1254770 | 0.822226 | 2.653639e-53 | -8.615850e-47 |
| Msa0149060 | Msa1254800 | 0.822166 | 2.739241e-53 | -8.615850e-47 |
| Msa0149060 | Msa1354040 | 0.809135 | 2.197244e-50 | -8.615850e-47 |
| Msa0149060 | Msa1418200 | 0.802632 | 5.117013e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149060 | MtrunA17_Chr1g0148681 | 96.172 | 418 | 15 | 1 | 6 | 423 | 1 | 417 | 0.0 | 825 |
| Msa0149060 | MtrunA17_Chr3g0138431 | 58.478 | 460 | 139 | 6 | 14 | 423 | 17 | 474 | 0.0 | 523 |
| Msa0149060 | MtrunA17_Chr2g0332181 | 46.528 | 432 | 203 | 6 | 8 | 423 | 10 | 429 | 4.62e-118 | 351 |
| Msa0149060 | MtrunA17_Chr2g0332171 | 59.727 | 293 | 115 | 3 | 134 | 423 | 193 | 485 | 2.55e-115 | 346 |
| Msa0149060 | MtrunA17_Chr3g0125051 | 51.661 | 271 | 131 | 0 | 143 | 413 | 221 | 491 | 9.09e-98 | 301 |
| Msa0149060 | MtrunA17_Chr3g0125041 | 49.818 | 275 | 136 | 1 | 146 | 418 | 227 | 501 | 2.77e-94 | 292 |
| Msa0149060 | MtrunA17_Chr1g0152871 | 49.474 | 285 | 140 | 3 | 139 | 420 | 68 | 351 | 4.75e-91 | 279 |
| Msa0149060 | MtrunA17_Chr3g0134401 | 46.026 | 302 | 150 | 5 | 124 | 418 | 35 | 330 | 1.55e-84 | 262 |
| Msa0149060 | MtrunA17_Chr3g0134421 | 47.426 | 272 | 141 | 1 | 149 | 418 | 71 | 342 | 2.63e-82 | 256 |
| Msa0149060 | MtrunA17_Chr3g0134411 | 45.588 | 272 | 146 | 1 | 149 | 418 | 78 | 349 | 1.01e-79 | 250 |
| Msa0149060 | MtrunA17_Chr3g0134441 | 48.485 | 264 | 134 | 2 | 155 | 418 | 61 | 322 | 2.10e-75 | 238 |
| Msa0149060 | MtrunA17_Chr7g0255771 | 42.125 | 273 | 153 | 5 | 146 | 416 | 182 | 451 | 2.77e-63 | 211 |
| Msa0149060 | MtrunA17_Chr5g0406741 | 40.441 | 272 | 154 | 4 | 146 | 416 | 155 | 419 | 1.96e-60 | 202 |
| Msa0149060 | MtrunA17_Chr8g0370671 | 39.350 | 277 | 156 | 6 | 143 | 416 | 156 | 423 | 4.06e-58 | 196 |
| Msa0149060 | MtrunA17_Chr3g0134431 | 44.309 | 246 | 114 | 4 | 166 | 409 | 13 | 237 | 4.65e-58 | 191 |
| Msa0149060 | MtrunA17_Chr5g0441371 | 41.328 | 271 | 150 | 6 | 148 | 416 | 150 | 413 | 5.26e-58 | 196 |
| Msa0149060 | MtrunA17_Chr8g0357001 | 42.857 | 217 | 117 | 3 | 162 | 378 | 486 | 695 | 1.37e-48 | 176 |
| Msa0149060 | MtrunA17_Chr3g0102851 | 32.184 | 261 | 162 | 9 | 131 | 386 | 2 | 252 | 1.44e-28 | 113 |
| Msa0149060 | MtrunA17_Chr3g0103471 | 33.054 | 239 | 146 | 6 | 144 | 377 | 4 | 233 | 1.08e-27 | 111 |
| Msa0149060 | MtrunA17_Chr3g0102861 | 32.636 | 239 | 147 | 6 | 144 | 377 | 4 | 233 | 1.82e-26 | 107 |
| Msa0149060 | MtrunA17_Chr3g0102621 | 32.143 | 224 | 138 | 6 | 159 | 377 | 25 | 239 | 5.06e-25 | 103 |
| Msa0149060 | MtrunA17_Chr3g0102631 | 36.471 | 170 | 99 | 5 | 213 | 377 | 1 | 166 | 9.03e-22 | 92.8 |
| Msa0149060 | MtrunA17_Chr3g0102651 | 36.471 | 170 | 99 | 5 | 213 | 377 | 1 | 166 | 9.03e-22 | 92.8 |
| Msa0149060 | MtrunA17_Chr3g0102661 | 36.471 | 170 | 99 | 5 | 213 | 377 | 1 | 166 | 9.03e-22 | 92.8 |
| Msa0149060 | MtrunA17_Chr3g0102671 | 36.471 | 170 | 99 | 5 | 213 | 377 | 1 | 166 | 9.03e-22 | 92.8 |
| Msa0149060 | MtrunA17_Chr5g0418901 | 48.101 | 79 | 41 | 0 | 217 | 295 | 7 | 85 | 2.78e-21 | 87.8 |
| Msa0149060 | MtrunA17_Chr1g0161581 | 36.158 | 177 | 92 | 4 | 182 | 357 | 364 | 520 | 1.14e-19 | 91.3 |
| Msa0149060 | MtrunA17_Chr6g0462911 | 29.707 | 239 | 144 | 9 | 154 | 387 | 38 | 257 | 5.86e-17 | 81.3 |
| Msa0149060 | MtrunA17_Chr5g0398791 | 29.932 | 147 | 102 | 1 | 188 | 334 | 27 | 172 | 4.54e-16 | 75.9 |
| Msa0149060 | MtrunA17_Chr6g0462981 | 27.839 | 273 | 171 | 8 | 154 | 419 | 38 | 291 | 4.52e-15 | 75.9 |
| Msa0149060 | MtrunA17_Chr3g0133211 | 27.933 | 179 | 124 | 3 | 173 | 346 | 73 | 251 | 1.35e-14 | 74.7 |
| Msa0149060 | MtrunA17_Chr4g0041721 | 26.257 | 179 | 127 | 3 | 173 | 346 | 68 | 246 | 3.00e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149060 | AT5G11300.1 | 51.756 | 427 | 171 | 6 | 14 | 423 | 26 | 434 | 3.52e-137 | 400 |
| Msa0149060 | AT5G25380.4 | 49.764 | 424 | 193 | 8 | 13 | 423 | 25 | 441 | 6.24e-126 | 372 |
| Msa0149060 | AT5G25380.3 | 49.762 | 420 | 193 | 6 | 13 | 423 | 25 | 435 | 3.30e-125 | 370 |
| Msa0149060 | AT5G25380.1 | 49.762 | 420 | 193 | 6 | 13 | 423 | 25 | 435 | 3.30e-125 | 370 |
| Msa0149060 | AT1G80370.1 | 47.891 | 403 | 208 | 1 | 15 | 415 | 48 | 450 | 5.07e-123 | 365 |
| Msa0149060 | AT5G25380.2 | 49.628 | 403 | 186 | 5 | 13 | 407 | 25 | 418 | 1.23e-120 | 357 |
| Msa0149060 | AT1G15570.1 | 44.469 | 461 | 202 | 9 | 6 | 423 | 1 | 450 | 4.28e-117 | 349 |
| Msa0149060 | AT5G11300.2 | 49.315 | 365 | 151 | 5 | 14 | 362 | 26 | 372 | 6.25e-107 | 322 |
| Msa0149060 | AT1G44110.1 | 51.685 | 267 | 129 | 0 | 146 | 412 | 178 | 444 | 1.84e-97 | 299 |
| Msa0149060 | AT5G43080.1 | 51.292 | 271 | 132 | 0 | 148 | 418 | 73 | 343 | 7.33e-97 | 294 |
| Msa0149060 | AT5G43080.2 | 51.292 | 271 | 127 | 1 | 148 | 418 | 73 | 338 | 7.40e-95 | 289 |
| Msa0149060 | AT1G47210.2 | 51.648 | 273 | 130 | 1 | 148 | 418 | 88 | 360 | 9.80e-95 | 290 |
| Msa0149060 | AT1G77390.1 | 45.820 | 323 | 173 | 1 | 92 | 412 | 106 | 428 | 3.14e-93 | 288 |
| Msa0149060 | AT1G47230.1 | 49.638 | 276 | 133 | 2 | 147 | 418 | 80 | 353 | 1.63e-90 | 278 |
| Msa0149060 | AT1G47230.2 | 49.458 | 277 | 133 | 3 | 147 | 418 | 80 | 354 | 1.04e-88 | 274 |
| Msa0149060 | AT1G47220.1 | 50.554 | 271 | 128 | 2 | 148 | 414 | 42 | 310 | 3.79e-85 | 263 |
| Msa0149060 | AT1G76310.1 | 40.925 | 281 | 157 | 5 | 138 | 416 | 152 | 425 | 2.57e-62 | 207 |
| Msa0149060 | AT1G20610.1 | 39.706 | 272 | 156 | 4 | 146 | 416 | 160 | 424 | 7.24e-60 | 201 |
| Msa0149060 | AT1G76310.2 | 43.802 | 242 | 127 | 5 | 138 | 377 | 152 | 386 | 2.22e-57 | 193 |
| Msa0149060 | AT1G76310.3 | 37.217 | 309 | 157 | 6 | 138 | 416 | 152 | 453 | 3.18e-56 | 192 |
| Msa0149060 | AT5G06150.1 | 42.279 | 272 | 148 | 5 | 146 | 416 | 165 | 428 | 3.65e-56 | 192 |
| Msa0149060 | AT2G26760.1 | 37.764 | 331 | 186 | 11 | 81 | 403 | 47 | 365 | 1.10e-53 | 184 |
| Msa0149060 | AT3G11520.1 | 42.353 | 255 | 139 | 4 | 162 | 416 | 159 | 405 | 1.16e-52 | 182 |
| Msa0149060 | AT2G17620.1 | 36.056 | 355 | 193 | 9 | 60 | 412 | 92 | 414 | 1.57e-51 | 179 |
| Msa0149060 | AT4G37490.1 | 39.209 | 278 | 154 | 7 | 146 | 416 | 148 | 417 | 2.04e-51 | 179 |
| Msa0149060 | AT3G11520.2 | 45.291 | 223 | 114 | 4 | 162 | 384 | 159 | 373 | 1.37e-50 | 175 |
| Msa0149060 | AT4G35620.1 | 40.221 | 271 | 148 | 7 | 146 | 412 | 155 | 415 | 1.70e-49 | 174 |
| Msa0149060 | AT1G16330.1 | 37.647 | 255 | 152 | 3 | 162 | 416 | 395 | 642 | 6.88e-48 | 173 |
| Msa0149060 | AT4G35620.2 | 42.797 | 236 | 121 | 7 | 146 | 377 | 155 | 380 | 9.02e-46 | 162 |
| Msa0149060 | AT1G76310.4 | 45.251 | 179 | 95 | 3 | 138 | 314 | 152 | 329 | 1.16e-43 | 156 |
| Msa0149060 | AT5G06150.2 | 45.294 | 170 | 90 | 3 | 146 | 314 | 165 | 332 | 8.18e-38 | 140 |
| Msa0149060 | AT1G20590.1 | 43.312 | 157 | 83 | 2 | 221 | 377 | 63 | 213 | 4.18e-36 | 134 |
| Msa0149060 | AT1G47210.1 | 51.402 | 107 | 46 | 2 | 148 | 250 | 88 | 192 | 1.12e-29 | 114 |
| Msa0149060 | AT1G34460.9 | 36.095 | 169 | 85 | 4 | 146 | 313 | 241 | 387 | 1.62e-20 | 94.0 |
| Msa0149060 | AT1G34460.6 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 2.06e-20 | 93.6 |
| Msa0149060 | AT1G34460.3 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 2.06e-20 | 93.6 |
| Msa0149060 | AT1G34460.8 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 2.06e-20 | 93.6 |
| Msa0149060 | AT1G34460.1 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 2.06e-20 | 93.6 |
| Msa0149060 | AT1G34460.7 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 2.29e-20 | 93.6 |
| Msa0149060 | AT1G34460.5 | 36.095 | 169 | 85 | 4 | 146 | 313 | 255 | 401 | 2.55e-20 | 93.6 |
| Msa0149060 | AT1G34460.2 | 36.095 | 169 | 85 | 4 | 146 | 313 | 252 | 398 | 2.62e-20 | 93.2 |
| Msa0149060 | AT1G34460.4 | 36.095 | 169 | 85 | 4 | 146 | 313 | 252 | 398 | 2.62e-20 | 93.2 |
| Msa0149060 | AT1G14750.1 | 32.432 | 185 | 112 | 5 | 171 | 351 | 365 | 540 | 7.45e-17 | 83.2 |
| Msa0149060 | AT1G14750.3 | 32.432 | 185 | 112 | 5 | 171 | 351 | 365 | 540 | 9.32e-17 | 82.8 |
| Msa0149060 | AT1G14750.2 | 32.432 | 185 | 112 | 5 | 171 | 351 | 197 | 372 | 9.62e-17 | 82.0 |
| Msa0149060 | AT1G14750.4 | 32.432 | 185 | 111 | 6 | 171 | 351 | 197 | 371 | 1.57e-15 | 78.6 |
| Msa0149060 | AT1G70210.1 | 31.169 | 231 | 137 | 8 | 130 | 349 | 19 | 238 | 4.22e-15 | 76.6 |
Find 99 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACATTGATTCAAAGTTAA+AGG | 0.138619 | 1_4:-9578869 | Msa0149060:CDS |
| CAAACAATACTCCTTATTTA+TGG | 0.152896 | 1_4:-9576114 | Msa0149060:three_prime_UTR |
| AGTTAAAGGATTCTCCTATT+TGG | 0.198243 | 1_4:-9578855 | Msa0149060:CDS |
| CTGCAATGTTTCCATGTAAT+TGG | 0.201122 | 1_4:+9578570 | None:intergenic |
| CTCTTTCTTTGCATCCTCTT+TGG | 0.213831 | 1_4:+9579323 | None:intergenic |
| TGAATACTAGTGTATATATC+AGG | 0.293341 | 1_4:+9578820 | None:intergenic |
| TGTTCATTATACCATAAATA+AGG | 0.300867 | 1_4:+9576103 | None:intergenic |
| TCAAGCTGACCTGGAATTCC+TGG | 0.325987 | 1_4:-9576934 | Msa0149060:CDS |
| AAAAGAGATTCCACCGGTTT+CGG | 0.329052 | 1_4:+9576399 | None:intergenic |
| TTGATGTCTCCTTGCAAGTT+TGG | 0.336175 | 1_4:-9579350 | Msa0149060:CDS |
| CACAGCAGATGCAGCTATCT+TGG | 0.343056 | 1_4:+9576854 | None:intergenic |
| AGCAAAATGGACAAAGAAAA+TGG | 0.345326 | 1_4:-9580799 | Msa0149060:CDS |
| ATTCCGTAGTTGTGACTTGT+AGG | 0.347282 | 1_4:-9576238 | Msa0149060:three_prime_UTR |
| AAATGAAAAGTACCTGTATC+TGG | 0.351506 | 1_4:+9579195 | None:intergenic |
| ATATTGATAGGTATTGAAAA+TGG | 0.354850 | 1_4:-9577386 | Msa0149060:intron |
| GTTTCCATGTAATTGGCTAA+TGG | 0.376830 | 1_4:+9578577 | None:intergenic |
| ACTACGGAATAGTCCGTAAC+TGG | 0.377146 | 1_4:+9576251 | None:intergenic |
| AGAGACTAGAAAATGACTTT+AGG | 0.378294 | 1_4:-9576355 | Msa0149060:three_prime_UTR |
| TACAGTGAGGGAGAGCAAAA+TGG | 0.378343 | 1_4:-9580812 | Msa0149060:intron |
| CTGAGAAATGTCTTGATTGT+TGG | 0.391036 | 1_4:+9577322 | None:intergenic |
| AGTTATTTATACCTCTTGTC+TGG | 0.400903 | 1_4:+9577492 | None:intergenic |
| TGACTGGTTGAGGGTCCATC+TGG | 0.412265 | 1_4:+9576824 | None:intergenic |
| AATAGTTTGCCAGGAATTCC+AGG | 0.413734 | 1_4:+9576925 | None:intergenic |
| TATCTGAATCAAGATATATA+TGG | 0.415300 | 1_4:-9576330 | Msa0149060:three_prime_UTR |
| AATGAACAAGCTGTTGTTGT+TGG | 0.425751 | 1_4:-9580721 | Msa0149060:CDS |
| GGGGCATAAGAAGTCCAAAT+AGG | 0.432031 | 1_4:+9578841 | None:intergenic |
| AGCATTGAGACGACAGCCTT+TGG | 0.432531 | 1_4:+9576607 | None:intergenic |
| ACGGATGCTCTGACTGGTTG+AGG | 0.439625 | 1_4:+9576814 | None:intergenic |
| GATTCTGGTTGACTGGCTTG+TGG | 0.442775 | 1_4:-9578521 | Msa0149060:CDS |
| AAGCAACTGCAGCCTTCGTT+TGG | 0.443429 | 1_4:+9578087 | None:intergenic |
| GTTGCAAATCTATCAGTTCA+AGG | 0.445104 | 1_4:+9576636 | None:intergenic |
| ACAGCAAGGTAAAGTGTGTC+TGG | 0.458805 | 1_4:+9578148 | None:intergenic |
| TCGTTTGGTAATCAAACGTT+GGG | 0.460508 | 1_4:+9578102 | None:intergenic |
| ACTAAGTGCATCAGTTGGCT+TGG | 0.468164 | 1_4:-9578899 | Msa0149060:CDS |
| CACAGAAGGTTGCACTTGCA+AGG | 0.472581 | 1_4:+9579257 | None:intergenic |
| GGCGAATTTGTCTCCGAAAC+CGG | 0.473905 | 1_4:-9576412 | Msa0149060:CDS |
| AATGAATAACAACAATTTGA+AGG | 0.474980 | 1_4:+9576274 | None:intergenic |
| TTTGTATAGTGCTCCAGAGT+TGG | 0.476724 | 1_4:+9576689 | None:intergenic |
| CGGATGCTCTGACTGGTTGA+GGG | 0.478583 | 1_4:+9576815 | None:intergenic |
| GTTGTTATTCATTCCAGTTA+CGG | 0.480686 | 1_4:-9576264 | Msa0149060:three_prime_UTR |
| TCCATTACACAGAAGAAAGA+AGG | 0.481135 | 1_4:-9579408 | Msa0149060:intron |
| CTAAGTGCATCAGTTGGCTT+GGG | 0.482229 | 1_4:-9578898 | Msa0149060:CDS |
| ACTCTCAACTCTCCAGATAC+AGG | 0.485551 | 1_4:-9579207 | Msa0149060:intron |
| TATGAAGAGATTTGTGCTCC+TGG | 0.491959 | 1_4:-9577553 | Msa0149060:CDS |
| TTAAATGTTTCCAGTGTGAA+AGG | 0.492235 | 1_4:-9578603 | Msa0149060:intron |
| GGTATTGAAAATGGAGAAAG+AGG | 0.497773 | 1_4:-9577377 | Msa0149060:CDS |
| TCAGAGCTTATAATATATCA+TGG | 0.499026 | 1_4:+9581127 | None:intergenic |
| TGTAGGATGGTACCAACCTC+TGG | 0.500087 | 1_4:-9576221 | Msa0149060:three_prime_UTR |
| TCAGGTTGCTCAAGCTGACC+TGG | 0.500817 | 1_4:-9576943 | Msa0149060:intron |
| GAGTGTCCTGCATTGAGAGC+AGG | 0.501654 | 1_4:+9579226 | None:intergenic |
| AAACGAAGGCTGCAGTTGCT+TGG | 0.504335 | 1_4:-9578085 | Msa0149060:CDS |
| CTTGCAAGTGCAACCTTCTG+TGG | 0.514382 | 1_4:-9579256 | Msa0149060:CDS |
| CAACAATCAAGACATTTCTC+AGG | 0.517270 | 1_4:-9577321 | Msa0149060:intron |
| AGACCCACGGATGCTCTGAC+TGG | 0.522371 | 1_4:+9576808 | None:intergenic |
| TGGTAATCAAACGTTGGGAA+AGG | 0.528424 | 1_4:+9578107 | None:intergenic |
| TTATTTGCAGAATCCAACTC+TGG | 0.529754 | 1_4:-9576702 | Msa0149060:intron |
| TTTGGTTGTCCAAACTTGCA+AGG | 0.533560 | 1_4:+9579341 | None:intergenic |
| GCTCTGCTAAATAGTTTGCC+AGG | 0.535403 | 1_4:+9576916 | None:intergenic |
| TTGCAGCAAGACATCACTCC+TGG | 0.536738 | 1_4:-9578553 | Msa0149060:CDS |
| AGTGTCCTGCATTGAGAGCA+GGG | 0.537519 | 1_4:+9579227 | None:intergenic |
| CTGCTGTGTTACTTGCCAGA+TGG | 0.539850 | 1_4:-9576839 | Msa0149060:CDS |
| ATCAACTTCTGAAGCTACAT+TGG | 0.548064 | 1_4:+9579368 | None:intergenic |
| TTCGTTTGGTAATCAAACGT+TGG | 0.551985 | 1_4:+9578101 | None:intergenic |
| GAATACTAGTGTATATATCA+GGG | 0.553135 | 1_4:+9578821 | None:intergenic |
| AGTAGCACAAACTTCTTCCA+AGG | 0.554621 | 1_4:-9577200 | Msa0149060:intron |
| CGTAGTTGTGACTTGTAGGA+TGG | 0.555393 | 1_4:-9576234 | Msa0149060:three_prime_UTR |
| AAGAAAATGGTGTGAATGTG+AGG | 0.565412 | 1_4:-9580786 | Msa0149060:CDS |
| TCTGGTTGACTGGCTTGTGG+AGG | 0.565987 | 1_4:-9578518 | Msa0149060:intron |
| GCAGATGCAGCTATCTTGGA+AGG | 0.568316 | 1_4:+9576858 | None:intergenic |
| TCAACCAGTCAGAGCATCCG+TGG | 0.573235 | 1_4:-9576812 | Msa0149060:CDS |
| GATCAAGAAGCACCAGAGGT+TGG | 0.576746 | 1_4:+9576209 | None:intergenic |
| AGACATCACTCCTGGCATGA+GGG | 0.583335 | 1_4:-9578545 | Msa0149060:CDS |
| GAGGCCATTAGCCAATTACA+TGG | 0.590812 | 1_4:-9578581 | Msa0149060:CDS |
| ATGTGAGGGTGACTCGAGCA+AGG | 0.595779 | 1_4:-9580771 | Msa0149060:CDS |
| AAGACATCACTCCTGGCATG+AGG | 0.598389 | 1_4:-9578546 | Msa0149060:CDS |
| CAAGATATATATGGAAGGTG+AGG | 0.602632 | 1_4:-9576321 | Msa0149060:three_prime_UTR |
| TCCTAGAAAAGAGATTCCAC+CGG | 0.607987 | 1_4:+9576393 | None:intergenic |
| GACATCACTCCTGGCATGAG+GGG | 0.614850 | 1_4:-9578544 | Msa0149060:CDS |
| AGTAGATCAAGAAGCACCAG+AGG | 0.621197 | 1_4:+9576205 | None:intergenic |
| GATCAATGAGATTCACAGCA+AGG | 0.622155 | 1_4:+9578134 | None:intergenic |
| GCAAGTTTGGACAACCAAAG+AGG | 0.622371 | 1_4:-9579337 | Msa0149060:CDS |
| GATTTGCAACTTAACACCAA+AGG | 0.622706 | 1_4:-9576623 | Msa0149060:CDS |
| TAATACATACTCCAGACAAG+AGG | 0.630206 | 1_4:-9577503 | Msa0149060:intron |
| TGTCCTGCATTGAGAGCAGG+GGG | 0.630645 | 1_4:+9579229 | None:intergenic |
| AATGTTTCCAGTGTGAAAGG+AGG | 0.632990 | 1_4:-9578600 | Msa0149060:intron |
| TGTGAGGGTGACTCGAGCAA+GGG | 0.633321 | 1_4:-9580770 | Msa0149060:CDS |
| TGAATCAAGATATATATGGA+AGG | 0.633673 | 1_4:-9576326 | Msa0149060:three_prime_UTR |
| AACGTTTGATTACCAAACGA+AGG | 0.634318 | 1_4:-9578099 | Msa0149060:CDS |
| CCTATGACAGTTCAATAGTG+TGG | 0.639183 | 1_4:-9576433 | Msa0149060:intron |
| CACTAGTATTCATGTCAGAG+AGG | 0.642881 | 1_4:-9578809 | Msa0149060:intron |
| AAGTACAGAAATGAAGTGTG+TGG | 0.643059 | 1_4:+9581197 | None:intergenic |
| CATCCTACAAGTCACAACTA+CGG | 0.643741 | 1_4:+9576235 | None:intergenic |
| GAGAAACTAAGTGCATCAGT+TGG | 0.645306 | 1_4:-9578904 | Msa0149060:CDS |
| ACATCACTCCTGGCATGAGG+GGG | 0.650245 | 1_4:-9578543 | Msa0149060:CDS |
| GTGTCCTGCATTGAGAGCAG+GGG | 0.656805 | 1_4:+9579228 | None:intergenic |
| CAACCAGTCAGAGCATCCGT+GGG | 0.669646 | 1_4:-9576811 | Msa0149060:intron |
| GAATTTGTCTCCGAAACCGG+TGG | 0.670360 | 1_4:-9576409 | Msa0149060:CDS |
| AATACTAGTGTATATATCAG+GGG | 0.674606 | 1_4:+9578822 | None:intergenic |
| AGAAAATGGTGTGAATGTGA+GGG | 0.707664 | 1_4:-9580785 | Msa0149060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTATTATTATTATTA+TGG | - | chr1_4:9576748-9576767 | Msa0149060:intron | 0.0% |
| !! | GATAAATATTATATAATTCA+AGG | + | chr1_4:9576452-9576471 | None:intergenic | 10.0% |
| !! | ATTATTATTATTATTGAGAT+TGG | - | chr1_4:9576785-9576804 | Msa0149060:intron | 10.0% |
| !! | TTTCATTTATTAGATATAAT+TGG | - | chr1_4:9578168-9578187 | Msa0149060:CDS | 10.0% |
| !!! | TATGAATTGAAATAATTTGT+AGG | - | chr1_4:9576845-9576864 | Msa0149060:CDS | 15.0% |
| !! | AAATTCCTTAGTAATTTAAA+TGG | - | chr1_4:9577014-9577033 | Msa0149060:intron | 15.0% |
| !! | AAAATATATACATGATTTCT+TGG | - | chr1_4:9577149-9577168 | Msa0149060:intron | 15.0% |
| !! | AGTTACAAATTAATTTAAAC+AGG | + | chr1_4:9577902-9577921 | None:intergenic | 15.0% |
| !!! | TTAATTTGTAACTATTGATT+TGG | - | chr1_4:9577909-9577928 | Msa0149060:intron | 15.0% |
| !!! | TTGTTATTTTTTATCTTGAT+TGG | - | chr1_4:9578395-9578414 | Msa0149060:intron | 15.0% |
| !!! | GTGTTTTTTTTTTTTTCATT+TGG | - | chr1_4:9578579-9578598 | Msa0149060:CDS | 15.0% |
| !! | TTAATACTATAAATCTGTAA+TGG | + | chr1_4:9578862-9578881 | None:intergenic | 15.0% |
| !! | TTATAGTATTAAACATTGTT+TGG | - | chr1_4:9578870-9578889 | Msa0149060:CDS | 15.0% |
| !!! | ACATTTCATATTTTTAAACT+TGG | + | chr1_4:9579477-9579496 | None:intergenic | 15.0% |
| !!! | GTTGAATTTTTATAACAATG+TGG | + | chr1_4:9576361-9576380 | None:intergenic | 20.0% |
| !!! | ATAAAAACAAGCATTTTGTA+TGG | - | chr1_4:9576893-9576912 | Msa0149060:CDS | 20.0% |
| !!! | TTTTATATAAACTTTCAACG+AGG | + | chr1_4:9576939-9576958 | None:intergenic | 20.0% |
| !! | GTTAACCATTTAAATTACTA+AGG | + | chr1_4:9577022-9577041 | None:intergenic | 20.0% |
| !! | AGTAATTTAAATGGTTAACA+TGG | - | chr1_4:9577023-9577042 | Msa0149060:intron | 20.0% |
| !!! | TTTTTATTACGTACAATAGA+TGG | - | chr1_4:9577057-9577076 | Msa0149060:intron | 20.0% |
| !!! | ATATTTTAACACAATTTGAG+TGG | + | chr1_4:9577136-9577155 | None:intergenic | 20.0% |
| !! | AACCAACAAATGAATATAAA+AGG | + | chr1_4:9577293-9577312 | None:intergenic | 20.0% |
| !! | TTTAGTAAAACTTCAAATGA+TGG | + | chr1_4:9577513-9577532 | None:intergenic | 20.0% |
| !!! | AATGATTGTATACTTTGAAA+GGG | - | chr1_4:9577557-9577576 | Msa0149060:CDS | 20.0% |
| !!! | AATGAGATTTTGTAAATCAT+TGG | - | chr1_4:9577850-9577869 | Msa0149060:intron | 20.0% |
| !!! | AATTGAATTGCATCAATTTT+TGG | - | chr1_4:9579110-9579129 | Msa0149060:intron | 20.0% |
| !!! | ATATTGATAGGTATTGAAAA+TGG | - | chr1_4:9579962-9579981 | Msa0149060:intron | 20.0% |
| !!! | GTAATTTTTTTTCTGTTATC+AGG | - | chr1_4:9580387-9580406 | Msa0149060:intron | 20.0% |
| !! | ATGTGAATCTAATTAGATTT+AGG | + | chr1_4:9580620-9580639 | None:intergenic | 20.0% |
| !! | TATCTGAATCAAGATATATA+TGG | - | chr1_4:9581018-9581037 | Msa0149060:intron | 20.0% |
| !! | AATGAATAACAACAATTTGA+AGG | + | chr1_4:9581077-9581096 | None:intergenic | 20.0% |
| !! | TGTTCATTATACCATAAATA+AGG | + | chr1_4:9581248-9581267 | None:intergenic | 20.0% |
| ! | TCAGAGCTTATAATATATCA+TGG | + | chr1_4:9576224-9576243 | None:intergenic | 25.0% |
| ! | AATCATAACATAGAAGAAAG+TGG | + | chr1_4:9576286-9576305 | None:intergenic | 25.0% |
| !! | TACTCATACATCAAATTTTG+AGG | - | chr1_4:9576695-9576714 | Msa0149060:CDS | 25.0% |
| !!! | GAATTTTGATGTCAAACTTA+TGG | + | chr1_4:9577000-9577019 | None:intergenic | 25.0% |
| ! | CAACAAATGAATATAAAAGG+TGG | + | chr1_4:9577290-9577309 | None:intergenic | 25.0% |
| !! | CACCTTTTATATTCATTTGT+TGG | - | chr1_4:9577288-9577307 | Msa0149060:intron | 25.0% |
| ! | TGTTGCATATATAAAAGAGT+TGG | - | chr1_4:9577357-9577376 | Msa0149060:CDS | 25.0% |
| ! | AGTATACAATCATTGAGTTT+AGG | + | chr1_4:9577551-9577570 | None:intergenic | 25.0% |
| ! | CAATGATTGTATACTTTGAA+AGG | - | chr1_4:9577556-9577575 | Msa0149060:CDS | 25.0% |
| !! | TATACTTTGAAAGGGAAAAA+AGG | - | chr1_4:9577565-9577584 | Msa0149060:intron | 25.0% |
| !! | AAAAGGCAATTATGTTTTCA+TGG | - | chr1_4:9577582-9577601 | Msa0149060:intron | 25.0% |
| !! | ATTTAAGATTAGTCCATGTT+TGG | + | chr1_4:9577618-9577637 | None:intergenic | 25.0% |
| !!! | TCGCAATATAATGGTTTTAA+AGG | + | chr1_4:9577757-9577776 | None:intergenic | 25.0% |
| ! | AGTCAAATAGTTCTTAATCA+TGG | + | chr1_4:9577801-9577820 | None:intergenic | 25.0% |
| !! | CTCTATATTTTGTCCATAAA+AGG | - | chr1_4:9577819-9577838 | Msa0149060:intron | 25.0% |
| !! | TCATTCAATTAGTCCTTTTA+TGG | + | chr1_4:9577835-9577854 | None:intergenic | 25.0% |
| ! | ATATAATTGGTATGCACAAT+CGG | - | chr1_4:9578181-9578200 | Msa0149060:intron | 25.0% |
| ! | AATACTAGTGTATATATCAG+GGG | + | chr1_4:9578529-9578548 | None:intergenic | 25.0% |
| ! | GAATACTAGTGTATATATCA+GGG | + | chr1_4:9578530-9578549 | None:intergenic | 25.0% |
| ! | TGAATACTAGTGTATATATC+AGG | + | chr1_4:9578531-9578550 | None:intergenic | 25.0% |
| ! | TATACAAAAGTAGAAGCAAT+TGG | + | chr1_4:9578668-9578687 | None:intergenic | 25.0% |
| !!! | ATCAATTTTTGGCTGTTTAA+TGG | - | chr1_4:9579121-9579140 | Msa0149060:intron | 25.0% |
| !! | GCTATGTTATATTCTTTTTC+AGG | - | chr1_4:9579154-9579173 | Msa0149060:intron | 25.0% |
| !! | TACTTTGTAATTTTCCTAGT+TGG | - | chr1_4:9579320-9579339 | Msa0149060:CDS | 25.0% |
| ! | TCCTTAAAGTCAAATTTACA+CGG | - | chr1_4:9579380-9579399 | Msa0149060:CDS | 25.0% |
| !!! | GTGAATTCCTGATATTTTTT+CGG | - | chr1_4:9579534-9579553 | Msa0149060:intron | 25.0% |
| ! | AATAATAGCAAAGCAAAACT+TGG | + | chr1_4:9579576-9579595 | None:intergenic | 25.0% |
| !! | CATTCATGATCAAAATTTTG+TGG | + | chr1_4:9579651-9579670 | None:intergenic | 25.0% |
| !!! | TCTTCTTGATAAGTTGATAA+CGG | + | chr1_4:9579729-9579748 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTTCTTTCTTTCG+TGG | - | chr1_4:9579761-9579780 | Msa0149060:intron | 25.0% |
| !!! | CAAGAGGTATAAATAACTTT+TGG | - | chr1_4:9579861-9579880 | Msa0149060:intron | 25.0% |
| !! | GCAATTTAGTTTAAGCTTAA+TGG | - | chr1_4:9580085-9580104 | Msa0149060:intron | 25.0% |
| !!! | TTCGGATATTTTAAATACCT+TGG | + | chr1_4:9580168-9580187 | None:intergenic | 25.0% |
| ! | TAATGAAAGAGCAATAGAAA+AGG | + | chr1_4:9580805-9580824 | None:intergenic | 25.0% |
| ! | AAAGGGAAACACATTTAATT+TGG | + | chr1_4:9580859-9580878 | None:intergenic | 25.0% |
| ! | AGCTTCTTCATTATGTTAAA+GGG | + | chr1_4:9580876-9580895 | None:intergenic | 25.0% |
| ! | TAGCTTCTTCATTATGTTAA+AGG | + | chr1_4:9580877-9580896 | None:intergenic | 25.0% |
| ! | TGAATCAAGATATATATGGA+AGG | - | chr1_4:9581022-9581041 | Msa0149060:intron | 25.0% |
| !! | CAAACAATACTCCTTATTTA+TGG | - | chr1_4:9581234-9581253 | Msa0149060:five_prime_UTR | 25.0% |
| AGCAAAATGGACAAAGAAAA+TGG | - | chr1_4:9576549-9576568 | Msa0149060:intron | 30.0% | |
| ! | ATGTGATTTTGCAGAAATGT+TGG | + | chr1_4:9576667-9576686 | None:intergenic | 30.0% |
| AATGGTTAACATGGTTCAAA+TGG | - | chr1_4:9577032-9577051 | Msa0149060:intron | 30.0% | |
| ATGGTTAACATGGTTCAAAT+GGG | - | chr1_4:9577033-9577052 | Msa0149060:intron | 30.0% | |
| ACGTACAATAGATGGTTAAA+CGG | - | chr1_4:9577065-9577084 | Msa0149060:intron | 30.0% | |
| AACACAATTTGAGTGGTTAA+TGG | + | chr1_4:9577129-9577148 | None:intergenic | 30.0% | |
| TTGTAGTTAATTGTGTTGAG+TGG | - | chr1_4:9577247-9577266 | Msa0149060:intron | 30.0% | |
| ! | TCCTAAGGCATTAGTTATAT+GGG | + | chr1_4:9577383-9577402 | None:intergenic | 30.0% |
| ! | ATCCTAAGGCATTAGTTATA+TGG | + | chr1_4:9577384-9577403 | None:intergenic | 30.0% |
| ! | TAACTAATGCCTTAGGATTT+TGG | - | chr1_4:9577386-9577405 | Msa0149060:intron | 30.0% |
| ! | AACTAATGCCTTAGGATTTT+GGG | - | chr1_4:9577387-9577406 | Msa0149060:intron | 30.0% |
| !! | AGTTGATGGTTAATGATGTT+GGG | + | chr1_4:9577478-9577497 | None:intergenic | 30.0% |
| !! | AAGTTGATGGTTAATGATGT+TGG | + | chr1_4:9577479-9577498 | None:intergenic | 30.0% |
| !! | GGTTAATTACGTTAAGTTGA+TGG | + | chr1_4:9577492-9577511 | None:intergenic | 30.0% |
| TGGATAATCTTAACCAAACA+TGG | - | chr1_4:9577602-9577621 | Msa0149060:intron | 30.0% | |
| TCTTAAATCTGTGTATGAGT+TGG | - | chr1_4:9577630-9577649 | Msa0149060:intron | 30.0% | |
| TTTGATATTGCATCAAAACG+CGG | - | chr1_4:9577699-9577718 | Msa0149060:intron | 30.0% | |
| !! | AAATGAAAAGTACCTGTATC+TGG | + | chr1_4:9578156-9578175 | None:intergenic | 30.0% |
| TTAATCACATTCACATCTCA+TGG | - | chr1_4:9578228-9578247 | Msa0149060:intron | 30.0% | |
| !! | CGACATTGATTCAAAGTTAA+AGG | - | chr1_4:9578479-9578498 | Msa0149060:intron | 30.0% |
| AGTTAAAGGATTCTCCTATT+TGG | - | chr1_4:9578493-9578512 | Msa0149060:intron | 30.0% | |
| TTAAATGTTTCCAGTGTGAA+AGG | - | chr1_4:9578745-9578764 | Msa0149060:intron | 30.0% | |
| !! | AAATAAGCTGAAAGTGCTTA+TGG | - | chr1_4:9578987-9579006 | Msa0149060:intron | 30.0% |
| ! | ACCGTGTAAATTTGACTTTA+AGG | + | chr1_4:9579384-9579403 | None:intergenic | 30.0% |
| CAAAGCAAAACTTGGTAAAT+CGG | + | chr1_4:9579568-9579587 | None:intergenic | 30.0% | |
| ! | TACTCTTTTCTAACTCTTCA+TGG | + | chr1_4:9579605-9579624 | None:intergenic | 30.0% |
| AGTTATTTATACCTCTTGTC+TGG | + | chr1_4:9579859-9579878 | None:intergenic | 30.0% | |
| !! | GAGTTTGTTTGTTTTCCTAA+TGG | + | chr1_4:9580358-9580377 | None:intergenic | 30.0% |
| TGAAAAATATCAACACCAGA+AGG | - | chr1_4:9580769-9580788 | Msa0149060:CDS | 30.0% | |
| AAAGGAAAATTCTAACCTTC+TGG | + | chr1_4:9580787-9580806 | None:intergenic | 30.0% | |
| AGAGACTAGAAAATGACTTT+AGG | - | chr1_4:9580993-9581012 | Msa0149060:intron | 30.0% | |
| ! | GTTGTTATTCATTCCAGTTA+CGG | - | chr1_4:9581084-9581103 | Msa0149060:intron | 30.0% |
| AAGTACAGAAATGAAGTGTG+TGG | + | chr1_4:9576154-9576173 | None:intergenic | 35.0% | |
| ATATTGTGACTGATACAGTG+AGG | - | chr1_4:9576523-9576542 | Msa0149060:intron | 35.0% | |
| TATTGTGACTGATACAGTGA+GGG | - | chr1_4:9576524-9576543 | Msa0149060:intron | 35.0% | |
| AAGAAAATGGTGTGAATGTG+AGG | - | chr1_4:9576562-9576581 | Msa0149060:intron | 35.0% | |
| AGAAAATGGTGTGAATGTGA+GGG | - | chr1_4:9576563-9576582 | Msa0149060:intron | 35.0% | |
| AATGAACAAGCTGTTGTTGT+TGG | - | chr1_4:9576627-9576646 | Msa0149060:CDS | 35.0% | |
| GCACATTTGAACTCAAATCA+TGG | + | chr1_4:9577202-9577221 | None:intergenic | 35.0% | |
| AGTTAATTGTGTTGAGTGGA+TGG | - | chr1_4:9577251-9577270 | Msa0149060:intron | 35.0% | |
| ! | TTTGTTGGTTGAAGTTTGTG+CGG | - | chr1_4:9577303-9577322 | Msa0149060:intron | 35.0% |
| ATGCTACAAGACCACAATTA+AGG | + | chr1_4:9577430-9577449 | None:intergenic | 35.0% | |
| !! | TAATTGTGGTCTTGTAGCAT+TGG | - | chr1_4:9577430-9577449 | Msa0149060:intron | 35.0% |
| !! | GTTGATGGTTAATGATGTTG+GGG | + | chr1_4:9577477-9577496 | None:intergenic | 35.0% |
| TGGTATCACAATGATGATTG+TGG | + | chr1_4:9577725-9577744 | None:intergenic | 35.0% | |
| TCCATTACACAGAAGAAAGA+AGG | - | chr1_4:9577940-9577959 | Msa0149060:intron | 35.0% | |
| ACCTTCTTTCTTCTGTGTAA+TGG | + | chr1_4:9577944-9577963 | None:intergenic | 35.0% | |
| !! | ATCAACTTCTGAAGCTACAT+TGG | + | chr1_4:9577983-9578002 | None:intergenic | 35.0% |
| GTTTCCATGTAATTGGCTAA+TGG | + | chr1_4:9578774-9578793 | None:intergenic | 35.0% | |
| CTGCAATGTTTCCATGTAAT+TGG | + | chr1_4:9578781-9578800 | None:intergenic | 35.0% | |
| ! | GATGTTTTCATAAGCTATCC+CGG | - | chr1_4:9578953-9578972 | Msa0149060:intron | 35.0% |
| AACTTACTAAGAGACTGTGT+AGG | + | chr1_4:9579042-9579061 | None:intergenic | 35.0% | |
| ! | GTTGCTTTGTCTAAGAAACA+AGG | + | chr1_4:9579069-9579088 | None:intergenic | 35.0% |
| ! | TCGTTTGGTAATCAAACGTT+GGG | + | chr1_4:9579249-9579268 | None:intergenic | 35.0% |
| ! | TTCGTTTGGTAATCAAACGT+TGG | + | chr1_4:9579250-9579269 | None:intergenic | 35.0% |
| AACGTTTGATTACCAAACGA+AGG | - | chr1_4:9579249-9579268 | Msa0149060:CDS | 35.0% | |
| AACTTGCATCTGACATAATC+AGG | + | chr1_4:9579347-9579366 | None:intergenic | 35.0% | |
| TTATGTCAGATGCAAGTTCT+TGG | - | chr1_4:9579349-9579368 | Msa0149060:CDS | 35.0% | |
| AGTTAGTTAATCAGAACCGT+TGG | - | chr1_4:9579409-9579428 | Msa0149060:intron | 35.0% | |
| AATGTCTGATCTTCATCGAA+CGG | - | chr1_4:9579492-9579511 | Msa0149060:intron | 35.0% | |
| TTGCTGACCGAAAAAATATC+AGG | + | chr1_4:9579544-9579563 | None:intergenic | 35.0% | |
| !! | GATAACGGAGAAAAAGAAGA+CGG | + | chr1_4:9579714-9579733 | None:intergenic | 35.0% |
| ACACAAAAATCTTCAACTCC+AGG | + | chr1_4:9579816-9579835 | None:intergenic | 35.0% | |
| TAATACATACTCCAGACAAG+AGG | - | chr1_4:9579845-9579864 | Msa0149060:intron | 35.0% | |
| !! | CGTTGACTCTTGATATTGAT+AGG | - | chr1_4:9579950-9579969 | Msa0149060:intron | 35.0% |
| ! | GGTATTGAAAATGGAGAAAG+AGG | - | chr1_4:9579971-9579990 | Msa0149060:intron | 35.0% |
| CTGAGAAATGTCTTGATTGT+TGG | + | chr1_4:9580029-9580048 | None:intergenic | 35.0% | |
| CAACAATCAAGACATTTCTC+AGG | - | chr1_4:9580027-9580046 | Msa0149060:intron | 35.0% | |
| GGAACTATAACCATCTTCTT+TGG | - | chr1_4:9580106-9580125 | Msa0149060:intron | 35.0% | |
| !!! | TCATGCTTATTTTGACCACA+GGG | + | chr1_4:9580198-9580217 | None:intergenic | 35.0% |
| !!! | TTCATGCTTATTTTGACCAC+AGG | + | chr1_4:9580199-9580218 | None:intergenic | 35.0% |
| AGCACTTCTATCATTCCATT+AGG | - | chr1_4:9580340-9580359 | Msa0149060:intron | 35.0% | |
| TTATTTGCAGAATCCAACTC+TGG | - | chr1_4:9580646-9580665 | Msa0149060:intron | 35.0% | |
| GTTGCAAATCTATCAGTTCA+AGG | + | chr1_4:9580715-9580734 | None:intergenic | 35.0% | |
| GATTTGCAACTTAACACCAA+AGG | - | chr1_4:9580725-9580744 | Msa0149060:CDS | 35.0% | |
| TCATTAACCTATTCTCTCTG+TGG | - | chr1_4:9580819-9580838 | Msa0149060:intron | 35.0% | |
| AGTTTAACCACAGAGAGAAT+AGG | + | chr1_4:9580829-9580848 | None:intergenic | 35.0% | |
| AATGAAGAAGCTAATGACAG+TGG | - | chr1_4:9580884-9580903 | Msa0149060:intron | 35.0% | |
| CAAGATATATATGGAAGGTG+AGG | - | chr1_4:9581027-9581046 | Msa0149060:intron | 35.0% | |
| GCCCATATAACTAATGCCTT+AGG | - | chr1_4:9577379-9577398 | Msa0149060:CDS | 40.0% | |
| ! | TAATGCCTTAGGATTTTGGG+TGG | - | chr1_4:9577390-9577409 | Msa0149060:intron | 40.0% |
| !! | GTGTATGAGTTGGTCAGAAT+AGG | - | chr1_4:9577640-9577659 | Msa0149060:intron | 40.0% |
| GTCAGAATAGGCCTAAATTG+CGG | - | chr1_4:9577652-9577671 | Msa0149060:intron | 40.0% | |
| CGATTGTGGTCGCAATATAA+TGG | + | chr1_4:9577766-9577785 | None:intergenic | 40.0% | |
| TTGATGTCTCCTTGCAAGTT+TGG | - | chr1_4:9577998-9578017 | Msa0149060:intron | 40.0% | |
| TTTGGTTGTCCAAACTTGCA+AGG | + | chr1_4:9578010-9578029 | None:intergenic | 40.0% | |
| CTCTTTCTTTGCATCCTCTT+TGG | + | chr1_4:9578028-9578047 | None:intergenic | 40.0% | |
| GAGAAACTAAGTGCATCAGT+TGG | - | chr1_4:9578444-9578463 | Msa0149060:intron | 40.0% | |
| CACTAGTATTCATGTCAGAG+AGG | - | chr1_4:9578539-9578558 | Msa0149060:CDS | 40.0% | |
| AATGTTTCCAGTGTGAAAGG+AGG | - | chr1_4:9578748-9578767 | Msa0149060:intron | 40.0% | |
| CTTATTTCCATAAGCTCACC+GGG | + | chr1_4:9578974-9578993 | None:intergenic | 40.0% | |
| GCTTATTTCCATAAGCTCAC+CGG | + | chr1_4:9578975-9578994 | None:intergenic | 40.0% | |
| GATCAATGAGATTCACAGCA+AGG | + | chr1_4:9579217-9579236 | None:intergenic | 40.0% | |
| TGGTAATCAAACGTTGGGAA+AGG | + | chr1_4:9579244-9579263 | None:intergenic | 40.0% | |
| TGACATAATCAGGACCAACT+AGG | + | chr1_4:9579337-9579356 | None:intergenic | 40.0% | |
| TATGAAGAGATTTGTGCTCC+TGG | - | chr1_4:9579795-9579814 | Msa0149060:intron | 40.0% | |
| !! | AACCATCTTCTTTGGCTTTC+AGG | - | chr1_4:9580114-9580133 | Msa0149060:intron | 40.0% |
| AGTAGCACAAACTTCTTCCA+AGG | - | chr1_4:9580148-9580167 | Msa0149060:intron | 40.0% | |
| !!! | TATTTTGACCACAGGGAATC+TGG | + | chr1_4:9580191-9580210 | None:intergenic | 40.0% |
| TCTAATGAGATCAGAACCGA+TGG | - | chr1_4:9580220-9580239 | Msa0149060:intron | 40.0% | |
| ! | GAAGTGCTCTATGAAGAAAC+TGG | + | chr1_4:9580328-9580347 | None:intergenic | 40.0% |
| ! | AATAGTTTGCCAGGAATTCC+AGG | + | chr1_4:9580426-9580445 | None:intergenic | 40.0% |
| AGTTAATGTTCACAGACCCA+CGG | + | chr1_4:9580556-9580575 | None:intergenic | 40.0% | |
| TTTGTATAGTGCTCCAGAGT+TGG | + | chr1_4:9580662-9580681 | None:intergenic | 40.0% | |
| CCACACTATTGAACTGTCAT+AGG | + | chr1_4:9580918-9580937 | None:intergenic | 40.0% | |
| CCTATGACAGTTCAATAGTG+TGG | - | chr1_4:9580915-9580934 | Msa0149060:intron | 40.0% | |
| !! | AAAAGAGATTCCACCGGTTT+CGG | + | chr1_4:9580952-9580971 | None:intergenic | 40.0% |
| TCCTAGAAAAGAGATTCCAC+CGG | + | chr1_4:9580958-9580977 | None:intergenic | 40.0% | |
| ! | ATTCCGTAGTTGTGACTTGT+AGG | - | chr1_4:9581110-9581129 | Msa0149060:intron | 40.0% |
| CATCCTACAAGTCACAACTA+CGG | + | chr1_4:9581116-9581135 | None:intergenic | 40.0% | |
| TACAGTGAGGGAGAGCAAAA+TGG | - | chr1_4:9576536-9576555 | Msa0149060:intron | 45.0% | |
| !! | AGCAAGGGCTAGAGTTTTGA+AGG | - | chr1_4:9576593-9576612 | Msa0149060:CDS | 45.0% |
| CATCTCCACCCAAAATCCTA+AGG | + | chr1_4:9577398-9577417 | None:intergenic | 45.0% | |
| !! | TAGGATTTTGGGTGGAGATG+CGG | - | chr1_4:9577398-9577417 | Msa0149060:intron | 45.0% |
| TGCGGTGTCTACCTTAATTG+TGG | - | chr1_4:9577416-9577435 | Msa0149060:intron | 45.0% | |
| TTAATGATGTTGGGGAGTCG+GGG | + | chr1_4:9577469-9577488 | None:intergenic | 45.0% | |
| GTTAATGATGTTGGGGAGTC+GGG | + | chr1_4:9577470-9577489 | None:intergenic | 45.0% | |
| GGTTAATGATGTTGGGGAGT+CGG | + | chr1_4:9577471-9577490 | None:intergenic | 45.0% | |
| !!! | GGTTTTAAAGGTCTCGACAG+TGG | + | chr1_4:9577745-9577764 | None:intergenic | 45.0% |
| GCAAGTTTGGACAACCAAAG+AGG | - | chr1_4:9578011-9578030 | Msa0149060:intron | 45.0% | |
| ACTCTCAACTCTCCAGATAC+AGG | - | chr1_4:9578141-9578160 | Msa0149060:CDS | 45.0% | |
| ACTAAGTGCATCAGTTGGCT+TGG | - | chr1_4:9578449-9578468 | Msa0149060:intron | 45.0% | |
| ! | CTAAGTGCATCAGTTGGCTT+GGG | - | chr1_4:9578450-9578469 | Msa0149060:intron | 45.0% |
| GGGGCATAAGAAGTCCAAAT+AGG | + | chr1_4:9578510-9578529 | None:intergenic | 45.0% | |
| GAGGCCATTAGCCAATTACA+TGG | - | chr1_4:9578767-9578786 | Msa0149060:intron | 45.0% | |
| ACAGCAAGGTAAAGTGTGTC+TGG | + | chr1_4:9579203-9579222 | None:intergenic | 45.0% | |
| ATTCACCGCAGTCAGTAAGT+TGG | + | chr1_4:9579520-9579539 | None:intergenic | 45.0% | |
| CTCCTGAAAGCCAAAGAAGA+TGG | + | chr1_4:9580119-9580138 | None:intergenic | 45.0% | |
| !! | CATCTTCTTTGGCTTTCAGG+AGG | - | chr1_4:9580117-9580136 | Msa0149060:intron | 45.0% |
| GTGAACCAGTCTTGATCCAT+CGG | + | chr1_4:9580239-9580258 | None:intergenic | 45.0% | |
| GCTCTATGAAGAAACTGGCA+CGG | + | chr1_4:9580323-9580342 | None:intergenic | 45.0% | |
| ! | GCTCTGCTAAATAGTTTGCC+AGG | + | chr1_4:9580435-9580454 | None:intergenic | 45.0% |
| ! | ACCGGTGGAATCTCTTTTCT+AGG | - | chr1_4:9580954-9580973 | Msa0149060:intron | 45.0% |
| ACTACGGAATAGTCCGTAAC+TGG | + | chr1_4:9581100-9581119 | None:intergenic | 45.0% | |
| ! | CGTAGTTGTGACTTGTAGGA+TGG | - | chr1_4:9581114-9581133 | Msa0149060:five_prime_UTR | 45.0% |
| !! | AGTAGATCAAGAAGCACCAG+AGG | + | chr1_4:9581146-9581165 | None:intergenic | 45.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr1_4:9576190-9576209 | None:intergenic | 50.0% | |
| TAATGATGTTGGGGAGTCGG+GGG | + | chr1_4:9577468-9577487 | None:intergenic | 50.0% | |
| CTGCAACTGTGCCGCAATTT+AGG | + | chr1_4:9577666-9577685 | None:intergenic | 50.0% | |
| GGTCTGCAAAGTTGCGATTG+TGG | + | chr1_4:9577780-9577799 | None:intergenic | 50.0% | |
| CACAGAAGGTTGCACTTGCA+AGG | + | chr1_4:9578094-9578113 | None:intergenic | 50.0% | |
| CTTGCAAGTGCAACCTTCTG+TGG | - | chr1_4:9578092-9578111 | Msa0149060:CDS | 50.0% | |
| AGTGTCCTGCATTGAGAGCA+GGG | + | chr1_4:9578124-9578143 | None:intergenic | 50.0% | |
| CTAATGGCCTCCTTTCACAC+TGG | + | chr1_4:9578758-9578777 | None:intergenic | 50.0% | |
| TTGCAGCAAGACATCACTCC+TGG | - | chr1_4:9578795-9578814 | Msa0149060:intron | 50.0% | |
| AAGACATCACTCCTGGCATG+AGG | - | chr1_4:9578802-9578821 | Msa0149060:intron | 50.0% | |
| AGACATCACTCCTGGCATGA+GGG | - | chr1_4:9578803-9578822 | Msa0149060:intron | 50.0% | |
| !! | GATTCTGGTTGACTGGCTTG+TGG | - | chr1_4:9578827-9578846 | Msa0149060:CDS | 50.0% |
| AAGCTATCCCGGTGAGCTTA+TGG | - | chr1_4:9578964-9578983 | Msa0149060:intron | 50.0% | |
| AAGCAACTGCAGCCTTCGTT+TGG | + | chr1_4:9579264-9579283 | None:intergenic | 50.0% | |
| AAACGAAGGCTGCAGTTGCT+TGG | - | chr1_4:9579263-9579282 | Msa0149060:CDS | 50.0% | |
| GAGCTGTCTGACTCATCCAA+CGG | + | chr1_4:9579428-9579447 | None:intergenic | 50.0% | |
| ! | CGGTTCCAACTTACTGACTG+CGG | - | chr1_4:9579512-9579531 | Msa0149060:intron | 50.0% |
| TATCCGAACCAGATTCCCTG+TGG | - | chr1_4:9580180-9580199 | Msa0149060:intron | 50.0% | |
| TGACCACAGGGAATCTGGTT+CGG | + | chr1_4:9580186-9580205 | None:intergenic | 50.0% | |
| CAGAACCGATGGATCAAGAC+TGG | - | chr1_4:9580231-9580250 | Msa0149060:intron | 50.0% | |
| TCAAGCTGACCTGGAATTCC+TGG | - | chr1_4:9580414-9580433 | Msa0149060:intron | 50.0% | |
| GCAGATGCAGCTATCTTGGA+AGG | + | chr1_4:9580493-9580512 | None:intergenic | 50.0% | |
| CACAGCAGATGCAGCTATCT+TGG | + | chr1_4:9580497-9580516 | None:intergenic | 50.0% | |
| !! | CTGCTGTGTTACTTGCCAGA+TGG | - | chr1_4:9580509-9580528 | Msa0149060:intron | 50.0% |
| ! | AGCATTGAGACGACAGCCTT+TGG | + | chr1_4:9580744-9580763 | None:intergenic | 50.0% |
| GGCGAATTTGTCTCCGAAAC+CGG | - | chr1_4:9580936-9580955 | Msa0149060:intron | 50.0% | |
| GAATTTGTCTCCGAAACCGG+TGG | - | chr1_4:9580939-9580958 | Msa0149060:intron | 50.0% | |
| TGTAGGATGGTACCAACCTC+TGG | - | chr1_4:9581127-9581146 | Msa0149060:five_prime_UTR | 50.0% | |
| !! | GATCAAGAAGCACCAGAGGT+TGG | + | chr1_4:9581142-9581161 | None:intergenic | 50.0% |
| ATGTGAGGGTGACTCGAGCA+AGG | - | chr1_4:9576577-9576596 | Msa0149060:intron | 55.0% | |
| TGTGAGGGTGACTCGAGCAA+GGG | - | chr1_4:9576578-9576597 | Msa0149060:intron | 55.0% | |
| ! | AGCAGGGGGTTTTCCACAGA+AGG | + | chr1_4:9578108-9578127 | None:intergenic | 55.0% |
| AAACCCCCTGCTCTCAATGC+AGG | - | chr1_4:9578116-9578135 | Msa0149060:CDS | 55.0% | |
| TGTCCTGCATTGAGAGCAGG+GGG | + | chr1_4:9578122-9578141 | None:intergenic | 55.0% | |
| GTGTCCTGCATTGAGAGCAG+GGG | + | chr1_4:9578123-9578142 | None:intergenic | 55.0% | |
| GAGTGTCCTGCATTGAGAGC+AGG | + | chr1_4:9578125-9578144 | None:intergenic | 55.0% | |
| GACATCACTCCTGGCATGAG+GGG | - | chr1_4:9578804-9578823 | Msa0149060:intron | 55.0% | |
| ACATCACTCCTGGCATGAGG+GGG | - | chr1_4:9578805-9578824 | Msa0149060:intron | 55.0% | |
| ! | TGAGGGGGATTCTGGTTGAC+TGG | - | chr1_4:9578820-9578839 | Msa0149060:CDS | 55.0% |
| !! | TCTGGTTGACTGGCTTGTGG+AGG | - | chr1_4:9578830-9578849 | Msa0149060:CDS | 55.0% |
| ! | TCAGGTTGCTCAAGCTGACC+TGG | - | chr1_4:9580405-9580424 | Msa0149060:intron | 55.0% |
| ! | TGACTGGTTGAGGGTCCATC+TGG | + | chr1_4:9580527-9580546 | None:intergenic | 55.0% |
| ! | CGGATGCTCTGACTGGTTGA+GGG | + | chr1_4:9580536-9580555 | None:intergenic | 55.0% |
| ! | ACGGATGCTCTGACTGGTTG+AGG | + | chr1_4:9580537-9580556 | None:intergenic | 55.0% |
| ! | TCAACCAGTCAGAGCATCCG+TGG | - | chr1_4:9580536-9580555 | Msa0149060:intron | 55.0% |
| ! | CAACCAGTCAGAGCATCCGT+GGG | - | chr1_4:9580537-9580556 | Msa0149060:intron | 55.0% |
| TCCTGGCATGAGGGGGATTC+TGG | - | chr1_4:9578812-9578831 | Msa0149060:CDS | 60.0% | |
| ACCAGAATCCCCCTCATGCC+AGG | + | chr1_4:9578816-9578835 | None:intergenic | 60.0% | |
| AGACCCACGGATGCTCTGAC+TGG | + | chr1_4:9580543-9580562 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 9576089 | 9581281 | 9576089 | ID=Msa0149060;Name=Msa0149060 |
| chr1_4 | mRNA | 9576089 | 9581281 | 9576089 | ID=Msa0149060-mRNA-1;Parent=Msa0149060;Name=Msa0149060-mRNA-1;_AED=0.12;_eAED=0.12;_QI=169|1|1|1|0.90|0.83|12|306|423 |
| chr1_4 | exon | 9576089 | 9576445 | 9576089 | ID=Msa0149060-mRNA-1:exon:4034;Parent=Msa0149060-mRNA-1 |
| chr1_4 | exon | 9576580 | 9576714 | 9576580 | ID=Msa0149060-mRNA-1:exon:4033;Parent=Msa0149060-mRNA-1 |
| chr1_4 | exon | 9576812 | 9576961 | 9576812 | ID=Msa0149060-mRNA-1:exon:4032;Parent=Msa0149060-mRNA-1 |
| chr1_4 | exon | 9577201 | 9577234 | 9577201 | ID=Msa0149060-mRNA-1:exon:4031;Parent=Msa0149060-mRNA-1 |
| chr1_4 | exon | 9577322 | 9577398 | 9577322 | ID=Msa0149060-mRNA-1:exon:4030;Parent=Msa0149060-mRNA-1 |
| chr1_4 | exon | 9577504 | 9577579 | 9577504 | ID=Msa0149060-mRNA-1:exon:4029;Parent=Msa0149060-mRNA-1 |
| chr1_4 | exon | 9578061 | 9578194 | 9578061 | ID=Msa0149060-mRNA-1:exon:4028;Parent=Msa0149060-mRNA-1 |
| chr1_4 | exon | 9578519 | 9578611 | 9578519 | ID=Msa0149060-mRNA-1:exon:4027;Parent=Msa0149060-mRNA-1 |
| chr1_4 | exon | 9578810 | 9578943 | 9578810 | ID=Msa0149060-mRNA-1:exon:4026;Parent=Msa0149060-mRNA-1 |
| chr1_4 | exon | 9579208 | 9579418 | 9579208 | ID=Msa0149060-mRNA-1:exon:4025;Parent=Msa0149060-mRNA-1 |
| chr1_4 | exon | 9580654 | 9580829 | 9580654 | ID=Msa0149060-mRNA-1:exon:4024;Parent=Msa0149060-mRNA-1 |
| chr1_4 | exon | 9581112 | 9581281 | 9581112 | ID=Msa0149060-mRNA-1:exon:4023;Parent=Msa0149060-mRNA-1 |
| chr1_4 | five_prime_UTR | 9581113 | 9581281 | 9581113 | ID=Msa0149060-mRNA-1:five_prime_utr;Parent=Msa0149060-mRNA-1 |
| chr1_4 | CDS | 9581112 | 9581112 | 9581112 | ID=Msa0149060-mRNA-1:cds;Parent=Msa0149060-mRNA-1 |
| chr1_4 | CDS | 9580654 | 9580829 | 9580654 | ID=Msa0149060-mRNA-1:cds;Parent=Msa0149060-mRNA-1 |
| chr1_4 | CDS | 9579208 | 9579418 | 9579208 | ID=Msa0149060-mRNA-1:cds;Parent=Msa0149060-mRNA-1 |
| chr1_4 | CDS | 9578810 | 9578943 | 9578810 | ID=Msa0149060-mRNA-1:cds;Parent=Msa0149060-mRNA-1 |
| chr1_4 | CDS | 9578519 | 9578611 | 9578519 | ID=Msa0149060-mRNA-1:cds;Parent=Msa0149060-mRNA-1 |
| chr1_4 | CDS | 9578061 | 9578194 | 9578061 | ID=Msa0149060-mRNA-1:cds;Parent=Msa0149060-mRNA-1 |
| chr1_4 | CDS | 9577504 | 9577579 | 9577504 | ID=Msa0149060-mRNA-1:cds;Parent=Msa0149060-mRNA-1 |
| chr1_4 | CDS | 9577322 | 9577398 | 9577322 | ID=Msa0149060-mRNA-1:cds;Parent=Msa0149060-mRNA-1 |
| chr1_4 | CDS | 9577201 | 9577234 | 9577201 | ID=Msa0149060-mRNA-1:cds;Parent=Msa0149060-mRNA-1 |
| chr1_4 | CDS | 9576812 | 9576961 | 9576812 | ID=Msa0149060-mRNA-1:cds;Parent=Msa0149060-mRNA-1 |
| chr1_4 | CDS | 9576580 | 9576714 | 9576580 | ID=Msa0149060-mRNA-1:cds;Parent=Msa0149060-mRNA-1 |
| chr1_4 | CDS | 9576395 | 9576445 | 9576395 | ID=Msa0149060-mRNA-1:cds;Parent=Msa0149060-mRNA-1 |
| chr1_4 | three_prime_UTR | 9576089 | 9576394 | 9576089 | ID=Msa0149060-mRNA-1:three_prime_utr;Parent=Msa0149060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
