AlfalfaGEDB | Msa0352200

M. sativa cultivar zhongmu-4 / Msa0352200

KEGG: K13126
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009651 GO:0009941 GO:0010029 GO:0010035 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0047484 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055035 GO:0065007 GO:0080134 GO:0080148 GO:0097159 GO:1900140 GO:1901000 GO:1901001 GO:1901363 GO:1901700 GO:2000026 GO:2000070
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0352200	XP_003599052.1	94.196	224	12	1	1	223	1	224	6.33e-148	422

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0352200	sp\|Q8VYM4\|PSRP2_ARATH	61.574	216	76	5	15	223	27	242	2.34e-83	251

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0352200	G7J1T1	94.196	224	12	1	1	223	1	224	3.02e-148	422

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0352200	0.838749	2.390797e-57	-8.615850e-47
Msa0000780	Msa0352200	0.830704	2.527700e-55	-8.615850e-47
Msa0001460	Msa0352200	0.880769	4.178741e-70	-8.615850e-47
Msa0001510	Msa0352200	0.810362	1.197148e-50	-8.615850e-47
Msa0001540	Msa0352200	0.830705	2.525905e-55	-8.615850e-47
Msa0003470	Msa0352200	0.812290	4.567258e-51	-8.615850e-47
Msa0004350	Msa0352200	0.820252	7.566516e-53	-8.615850e-47
Msa0005690	Msa0352200	0.832366	9.851601e-56	-8.615850e-47
Msa0006050	Msa0352200	0.820687	6.014381e-53	-8.615850e-47
Msa0006700	Msa0352200	0.815757	7.849622e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0352200	MtrunA17_Chr3g0087481	94.196	224	12	1	1	223	1	224	5.82e-152	422
Msa0352200	MtrunA17_Chr1g0177101	44.444	162	90	0	59	220	108	269	1.17e-42	146
Msa0352200	MtrunA17_Chr7g0267571	33.929	280	139	7	2	235	10	289	7.85e-40	139
Msa0352200	MtrunA17_Chr1g0181111	35.391	243	130	5	4	222	21	260	1.53e-30	114
Msa0352200	MtrunA17_Chr3g0116631	39.205	176	103	2	47	221	97	269	4.98e-30	113
Msa0352200	MtrunA17_Chr3g0116631	39.241	79	48	0	58	136	205	283	6.83e-13	66.6
Msa0352200	MtrunA17_Chr1g0168601	34.254	181	105	2	47	221	44	216	1.30e-29	110
Msa0352200	MtrunA17_Chr4g0058151	37.888	161	95	2	60	220	123	278	4.70e-27	105
Msa0352200	MtrunA17_Chr4g0058151	44.872	78	43	0	60	137	217	294	1.36e-16	77.0
Msa0352200	MtrunA17_Chr4g0070231	29.319	191	109	3	61	229	133	319	5.27e-16	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0352200	AT3G52150.2	61.574	216	76	5	15	223	27	242	2.38e-84	251
Msa0352200	AT3G52150.1	61.574	216	76	5	15	223	27	242	2.38e-84	251
Msa0352200	AT3G52380.1	42.135	178	95	2	49	220	106	281	1.67e-41	144
Msa0352200	AT1G60000.1	38.953	172	96	2	51	220	75	239	1.03e-33	122
Msa0352200	AT2G37220.1	32.510	243	115	5	15	222	40	268	5.46e-31	116
Msa0352200	AT5G50250.1	37.126	167	100	2	54	220	108	269	3.78e-30	114
Msa0352200	AT5G50250.1	41.026	78	46	0	60	137	208	285	9.61e-14	69.3
Msa0352200	AT4G24770.1	37.143	175	104	3	48	221	138	307	4.04e-26	103
Msa0352200	AT4G24770.1	46.341	82	43	1	56	137	242	322	4.28e-17	79.3
Msa0352200	AT4G24770.2	37.143	175	104	3	48	221	138	307	4.04e-26	103

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Find 51 sgRNAs with CRISPR-Local

Find 568 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGGAGGTTTGCCAGTCC+AGG	0.484987	3_1:-20444835	Msa0352200:CDS
AAGTAAGTAACTGGGAGTAG+TGG	0.573519	3_1:+20448593	None:intergenic
AAGTGTTGTGAGTTAGAGAA+AGG	0.537007	3_1:+20448511	None:intergenic
ACCATGTTCTTGAACAATCT+TGG	0.384608	3_1:+20448314	None:intergenic
ACCTCAAAATCAAGCGGTTT+TGG	0.253756	3_1:-20444672	Msa0352200:CDS
ACGACGTGTCGTAACGACAA+AGG	0.604422	3_1:+20448446	None:intergenic
AGAAGCCATTGTTTGTAATG+AGG	0.507143	3_1:+20448554	None:intergenic
AGCAAATGCTCTTAGTGCCA+AGG	0.546104	3_1:-20444712	Msa0352200:CDS
AGCATGCAAAATAAACAGGA+AGG	0.577434	3_1:+20444572	None:intergenic
AGGTTTGCCAGTCCAGGCCG+AGG	0.614335	3_1:-20444829	Msa0352200:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTTATCTCGTTATCTTGT+TGG	+	chr3_1:20444586-20444605	None:intergenic	30.0%
GATTGAATGAAGTAAGTAAC+TGG	+	chr3_1:20444632-20444651	None:intergenic	30.0%
TTGTTTGTAATGAGGAATTG+AGG	+	chr3_1:20444654-20444673	None:intergenic	30.0%
CAATTCCTCATTACAAACAA+TGG	-	chr3_1:20444654-20444673	Msa0352200:CDS	30.0%
ATAATGAGAGAAGTCTTTAG+TGG	-	chr3_1:20446505-20446524	Msa0352200:intron	30.0%
TAATGAGAGAAGTCTTTAGT+GGG	-	chr3_1:20446506-20446525	Msa0352200:intron	30.0%
CAAAACAAATCAAAGAAGGT+CGG	-	chr3_1:20446591-20446610	Msa0352200:intron	30.0%
CAAGAAAATCATATGGGTTT+AGG	+	chr3_1:20446784-20446803	None:intergenic	30.0%
TGTTTCAGTTGTTTGTTTAG+AGG	-	chr3_1:20446840-20446859	Msa0352200:intron	30.0%
GTTTCAGTTGTTTGTTTAGA+GGG	-	chr3_1:20446841-20446860	Msa0352200:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	20444560	20448675	20444560	ID=Msa0352200;Name=Msa0352200
chr3_1	mRNA	20444560	20448675	20444560	ID=Msa0352200-mRNA-1;Parent=Msa0352200;Name=Msa0352200-mRNA-1;_AED=0.20;_eAED=0.20;_QI=113\|1\|0.66\|1\|0.5\|1\|3\|0\|238
chr3_1	exon	20444560	20444907	20444560	ID=Msa0352200-mRNA-1:exon:4720;Parent=Msa0352200-mRNA-1
chr3_1	exon	20445018	20445119	20445018	ID=Msa0352200-mRNA-1:exon:4719;Parent=Msa0352200-mRNA-1
chr3_1	exon	20448296	20448675	20448296	ID=Msa0352200-mRNA-1:exon:4718;Parent=Msa0352200-mRNA-1
chr3_1	five_prime_UTR	20448563	20448675	20448563	ID=Msa0352200-mRNA-1:five_prime_utr;Parent=Msa0352200-mRNA-1
chr3_1	CDS	20448296	20448562	20448296	ID=Msa0352200-mRNA-1:cds;Parent=Msa0352200-mRNA-1
chr3_1	CDS	20445018	20445119	20445018	ID=Msa0352200-mRNA-1:cds;Parent=Msa0352200-mRNA-1
chr3_1	CDS	20444560	20444907	20444560	ID=Msa0352200-mRNA-1:cds;Parent=Msa0352200-mRNA-1

Gene Sequence

>Msa0352200

ATGGCTTCTTTACTCTCACAACTCAATTTCCTTTCTCTAACTCACAACACTTCCACAAACTTTACCCTAAAACCCAAAACGACAACACCTTCTTCCTTTGTCGTTACGACACGTCGTTTTAGAAAACACTTTGTTGTTTCTTCTGAACAAGCCACGGTGGATTCTCCTGCTGTCAGAAAACTCTATGTTGGTAACATTCCTCGTACTGTTAGTAATGATGAACTTGCCAAGATTGTTCAAGAACATGGTGCTGTTGAAAAAGCTGAGGTTATGTATGATAAATACTCTAAAAGGAGCCGTCGCTTTGCATTTGTTACAATGAAAACCGTTGAGGATGCAAACGCAGCAGCTGAGAAACTCAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTGAATATAACCGAAAAACCTTTAACAACAGGAGGTTTGCCAGTCCAGGCCGAGGAATCCGCATTTGTAGACAGTCCTTACAAGGTATATGTGGGAAATCTGGCTAAGAATGTAACCTCTGATAGCCTTAAAAATTTCTTCTCGGAAAAAGCAAATGCTCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACCTCAAAATCAAGCGGTTTTGGCTTTGTTACTTTTTCATCAGATGAGGATGTAGAAGCTGCTATCTCATCTTTCAACAATGCTGTAAGTTTTTCACTGCCCTTCCTGTTTATTTTGCATGCTGAAACTTCCTGA

Protein sequence

>Msa0352200

MASLLSQLNFLSLTHNTSTNFTLKPKTTTPSSFVVTTRRFRKHFVVSSEQATVDSPAVRKLYVGNIPRTVSNDELAKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKLNGTQIGGREIKVNITEKPLTTGGLPVQAEESAFVDSPYKVYVGNLAKNVTSDSLKNFFSEKANALSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAVSFSLPFLFILHAETS*