AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0352200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0352200 MtrunA17_Chr3g0087481 94.196 224 12 1 1 223 1 224 5.82e-152 422
Msa0352200 MtrunA17_Chr1g0177101 44.444 162 90 0 59 220 108 269 1.17e-42 146
Msa0352200 MtrunA17_Chr7g0267571 33.929 280 139 7 2 235 10 289 7.85e-40 139
Msa0352200 MtrunA17_Chr1g0181111 35.391 243 130 5 4 222 21 260 1.53e-30 114
Msa0352200 MtrunA17_Chr3g0116631 39.205 176 103 2 47 221 97 269 4.98e-30 113
Msa0352200 MtrunA17_Chr3g0116631 39.241 79 48 0 58 136 205 283 6.83e-13 66.6
Msa0352200 MtrunA17_Chr1g0168601 34.254 181 105 2 47 221 44 216 1.30e-29 110
Msa0352200 MtrunA17_Chr4g0058151 37.888 161 95 2 60 220 123 278 4.70e-27 105
Msa0352200 MtrunA17_Chr4g0058151 44.872 78 43 0 60 137 217 294 1.36e-16 77.0
Msa0352200 MtrunA17_Chr4g0070231 29.319 191 109 3 61 229 133 319 5.27e-16 76.3
Msa0352200 MtrunA17_Chr4g0070231 31.325 166 100 4 54 219 41 192 2.28e-13 68.6
Msa0352200 MtrunA17_Chr6g0465631 25.581 215 136 4 33 233 79 283 2.50e-14 71.6
Msa0352200 MtrunA17_Chr6g0466451 25.581 215 136 4 33 233 79 283 2.69e-14 71.6
Msa0352200 MtrunA17_Chr4g0044541 31.746 189 122 4 50 233 204 390 5.23e-14 70.9
Msa0352200 MtrunA17_Chr4g0044541 27.607 163 106 2 61 223 36 186 3.09e-13 68.6
Msa0352200 MtrunA17_Chr4g0044541 30.814 172 103 6 56 221 114 275 6.69e-11 61.6
Msa0352200 MtrunA17_Chr1g0153181 29.949 197 129 5 40 229 191 385 7.73e-14 70.5
Msa0352200 MtrunA17_Chr1g0153181 24.540 163 111 2 61 223 34 184 8.04e-11 61.6
Msa0352200 MtrunA17_Chr3g0120721 25.882 170 109 3 54 220 13 168 2.49e-13 68.6
Msa0352200 MtrunA17_Chr8g0344491 28.866 194 111 5 54 225 142 330 5.29e-13 67.8
Msa0352200 MtrunA17_Chr8g0344491 29.518 166 103 4 54 219 57 208 6.95e-12 64.3
Msa0352200 MtrunA17_Chr5g0411091 31.034 174 113 5 59 230 96 264 7.78e-13 66.6
Msa0352200 MtrunA17_Chr1g0179701 30.052 193 121 6 44 229 225 410 9.24e-13 67.0
Msa0352200 MtrunA17_Chr1g0179701 26.404 178 119 2 45 222 48 213 1.52e-12 66.6
Msa0352200 MtrunA17_Chr6g0449481 25.381 197 121 5 47 236 33 210 1.06e-12 66.6
Msa0352200 MtrunA17_Chr1g0201151 29.808 208 120 6 44 236 193 389 1.81e-12 66.2
Msa0352200 MtrunA17_Chr0c09g0493511 29.293 198 117 7 43 228 105 291 2.25e-12 65.9
Msa0352200 MtrunA17_Chr3g0110211 27.500 160 103 2 62 220 28 175 2.51e-12 65.5
Msa0352200 MtrunA17_Chr3g0139111 28.235 170 100 3 54 219 55 206 2.12e-11 63.2
Msa0352200 MtrunA17_Chr3g0139111 26.230 183 108 3 61 220 147 325 3.11e-11 62.4
Msa0352200 MtrunA17_Chr7g0265341 30.168 179 116 4 61 233 251 426 3.19e-11 62.8
Msa0352200 MtrunA17_Chr3g0132451 25.616 203 135 6 27 220 50 245 5.13e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0352200 AT3G52150.2 61.574 216 76 5 15 223 27 242 2.38e-84 251
Msa0352200 AT3G52150.1 61.574 216 76 5 15 223 27 242 2.38e-84 251
Msa0352200 AT3G52380.1 42.135 178 95 2 49 220 106 281 1.67e-41 144
Msa0352200 AT1G60000.1 38.953 172 96 2 51 220 75 239 1.03e-33 122
Msa0352200 AT2G37220.1 32.510 243 115 5 15 222 40 268 5.46e-31 116
Msa0352200 AT5G50250.1 37.126 167 100 2 54 220 108 269 3.78e-30 114
Msa0352200 AT5G50250.1 41.026 78 46 0 60 137 208 285 9.61e-14 69.3
Msa0352200 AT4G24770.1 37.143 175 104 3 48 221 138 307 4.04e-26 103
Msa0352200 AT4G24770.1 46.341 82 43 1 56 137 242 322 4.28e-17 79.3
Msa0352200 AT4G24770.2 37.143 175 104 3 48 221 138 307 4.04e-26 103
Msa0352200 AT4G24770.2 46.341 82 43 1 56 137 242 322 4.28e-17 79.3
Msa0352200 AT1G01080.3 33.690 187 118 3 46 227 95 280 9.66e-22 91.7
Msa0352200 AT2G35410.1 34.463 177 105 4 50 220 86 257 3.37e-21 90.5
Msa0352200 AT1G01080.1 33.889 180 113 3 46 220 95 273 4.59e-20 87.0
Msa0352200 AT1G01080.2 33.702 181 113 4 46 220 95 274 8.37e-19 83.6
Msa0352200 AT1G22760.1 33.333 204 122 6 40 233 207 406 3.18e-18 83.6
Msa0352200 AT1G71770.1 32.843 204 123 6 40 233 217 416 6.24e-17 80.1
Msa0352200 AT1G71770.2 32.843 204 123 6 40 233 217 416 6.24e-17 80.1
Msa0352200 AT3G13224.1 28.061 196 109 7 54 233 14 193 1.61e-16 76.3
Msa0352200 AT3G13224.3 30.409 171 96 6 57 220 8 162 3.82e-16 77.0
Msa0352200 AT3G13224.2 29.885 174 99 6 54 220 14 171 8.58e-15 73.2
Msa0352200 AT3G14100.1 27.979 193 108 4 61 231 146 329 1.25e-14 72.8
Msa0352200 AT3G14100.1 31.737 167 100 4 54 220 54 206 5.05e-13 68.2
Msa0352200 AT3G16380.1 30.964 197 123 5 32 220 174 365 6.41e-14 70.9
Msa0352200 AT1G49760.1 27.568 185 113 4 61 238 47 217 1.43e-13 70.1
Msa0352200 AT1G49760.1 30.899 178 116 3 61 233 226 401 3.30e-13 68.9
Msa0352200 AT1G49760.2 27.568 185 113 4 61 238 47 217 1.43e-13 70.1
Msa0352200 AT1G49760.2 30.899 178 116 3 61 233 226 401 3.30e-13 68.9
Msa0352200 AT1G54080.1 27.979 193 108 4 61 231 150 333 1.56e-13 69.7
Msa0352200 AT1G54080.1 30.539 167 102 4 54 220 58 210 3.38e-12 65.9
Msa0352200 AT2G23350.1 32.402 179 112 4 61 233 227 402 1.69e-13 69.7
Msa0352200 AT2G23350.1 33.133 166 100 5 57 221 132 287 1.01e-11 64.7
Msa0352200 AT2G36660.1 29.885 174 115 3 61 229 203 374 2.00e-13 69.7
Msa0352200 AT2G36660.1 28.571 168 108 3 56 223 21 176 2.98e-11 63.2
Msa0352200 AT1G17370.1 27.933 179 101 4 61 217 141 313 2.36e-13 69.3
Msa0352200 AT1G17370.1 30.675 163 99 4 54 216 49 197 3.33e-11 62.8
Msa0352200 AT1G17370.2 28.977 176 100 4 61 217 141 310 6.15e-13 67.8
Msa0352200 AT1G17370.2 30.675 163 99 4 54 216 49 197 3.16e-11 62.8
Msa0352200 AT4G34110.1 32.967 182 112 6 61 236 217 394 7.96e-13 67.8
Msa0352200 AT4G34110.1 31.395 172 102 6 56 221 116 277 1.85e-12 66.6
Msa0352200 AT4G09040.1 24.554 224 150 5 12 220 33 252 1.07e-12 66.6
Msa0352200 AT4G09040.2 26.087 184 122 5 41 220 19 192 1.93e-12 65.1
Msa0352200 AT1G54080.2 30.120 166 85 4 88 231 181 337 2.05e-12 66.2
Msa0352200 AT1G54080.2 30.409 171 101 5 54 220 58 214 3.82e-11 62.8
Msa0352200 AT1G34140.1 32.544 169 106 5 61 223 121 287 3.66e-12 65.5
Msa0352200 AT3G53460.1 44.304 79 44 0 60 138 100 178 4.87e-12 65.1
Msa0352200 AT3G53460.1 38.961 77 47 0 60 136 258 334 1.21e-11 63.9
Msa0352200 AT3G53460.3 44.304 79 44 0 60 138 100 178 4.87e-12 65.1
Msa0352200 AT3G53460.3 38.961 77 47 0 60 136 258 334 1.21e-11 63.9
Msa0352200 AT3G53460.2 44.304 79 44 0 60 138 100 178 4.87e-12 65.1
Msa0352200 AT3G53460.2 38.961 77 47 0 60 136 258 334 1.21e-11 63.9
Msa0352200 AT2G18510.1 27.500 160 103 2 61 219 27 174 1.37e-11 63.9
Msa0352200 AT3G53460.4 38.961 77 47 0 60 136 279 355 1.39e-11 63.9
Msa0352200 AT4G13860.1 37.333 75 47 0 60 134 4 78 3.40e-11 58.5

Find 51 sgRNAs with CRISPR-Local

Find 568 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAAACCTCCTGTTGTTAA+AGG 0.202407 3_1:+20444843 None:intergenic
ACCTCAAAATCAAGCGGTTT+TGG 0.253756 3_1:-20444672 Msa0352200:CDS
GGAAGAAGGTGTTGTCGTTT+TGG 0.275360 3_1:+20448467 None:intergenic
TGTATGATAAATACTCTAAA+AGG 0.332898 3_1:-20445093 Msa0352200:CDS
GCCAAGGTTTCACGGGTTCC+TGG 0.336172 3_1:-20444696 Msa0352200:CDS
TTTATCTTATGACAGCAAAT+TGG 0.336684 3_1:-20444900 Msa0352200:intron
GATTGAATGAAGTAAGTAAC+TGG 0.344748 3_1:+20448584 None:intergenic
CAAGGTATATGTGGGAAATC+TGG 0.373394 3_1:-20444781 Msa0352200:CDS
TTTCCCACATATACCTTGTA+AGG 0.379798 3_1:+20444786 None:intergenic
ACCATGTTCTTGAACAATCT+TGG 0.384608 3_1:+20448314 None:intergenic
CGTTATCTTGTTGGTGGTGT+TGG 0.404588 3_1:+20448639 None:intergenic
TTTCAGCATGCAAAATAAAC+AGG 0.414943 3_1:+20444568 None:intergenic
GCGGATTCCTCGGCCTGGAC+TGG 0.418312 3_1:+20444822 None:intergenic
AGTTTATCTCGTTATCTTGT+TGG 0.430084 3_1:+20448630 None:intergenic
CTCTTAGTGCCAAGGTTTCA+CGG 0.433896 3_1:-20444704 Msa0352200:CDS
CCAAGGTTTCACGGGTTCCT+GGG 0.476496 3_1:-20444695 Msa0352200:CDS
CAGTCCTTACAAGGTATATG+TGG 0.476562 3_1:-20444790 Msa0352200:CDS
GTCTACAAATGCGGATTCCT+CGG 0.478263 3_1:+20444812 None:intergenic
AACAGGAGGTTTGCCAGTCC+AGG 0.484987 3_1:-20444835 Msa0352200:CDS
TTATCTCGTTATCTTGTTGG+TGG 0.485113 3_1:+20448633 None:intergenic
ATTTGTAGACAGTCCTTACA+AGG 0.497965 3_1:-20444799 Msa0352200:CDS
AGAAGCCATTGTTTGTAATG+AGG 0.507143 3_1:+20448554 None:intergenic
TTGTTTGTAATGAGGAATTG+AGG 0.507578 3_1:+20448562 None:intergenic
CCCAGGAACCCGTGAAACCT+TGG 0.513301 3_1:+20444695 None:intergenic
ATCTTATGACAGCAAATTGG+AGG 0.518029 3_1:-20444897 Msa0352200:intron
AAGTGTTGTGAGTTAGAGAA+AGG 0.537007 3_1:+20448511 None:intergenic
TCTTAGTGCCAAGGTTTCAC+GGG 0.544466 3_1:-20444703 Msa0352200:CDS
AGCAAATGCTCTTAGTGCCA+AGG 0.546104 3_1:-20444712 Msa0352200:CDS
TGCTGCGTTTGCATCCTCAA+CGG 0.548877 3_1:+20445039 None:intergenic
GCCAAGATTGTTCAAGAACA+TGG 0.550336 3_1:-20448315 Msa0352200:CDS
CAATTCCTCATTACAAACAA+TGG 0.551662 3_1:-20448559 Msa0352200:exon
CAAATGCGGATTCCTCGGCC+TGG 0.555822 3_1:+20444817 None:intergenic
GCTGTCAGAAAACTCTATGT+TGG 0.563596 3_1:-20448372 Msa0352200:CDS
AAGTAAGTAACTGGGAGTAG+TGG 0.573519 3_1:+20448593 None:intergenic
AGCATGCAAAATAAACAGGA+AGG 0.577434 3_1:+20444572 None:intergenic
TGTTTCTTCTGAACAAGCCA+CGG 0.601130 3_1:-20448406 Msa0352200:CDS
ACGACGTGTCGTAACGACAA+AGG 0.604422 3_1:+20448446 None:intergenic
TCTTATGACAGCAAATTGGA+GGG 0.605874 3_1:-20444896 Msa0352200:intron
GCAGCAGCTGAGAAACTCAA+TGG 0.608545 3_1:-20445022 Msa0352200:CDS
TGTTACAATGAAAACCGTTG+AGG 0.611936 3_1:-20445053 Msa0352200:CDS
AGGTTTGCCAGTCCAGGCCG+AGG 0.614335 3_1:-20444829 Msa0352200:CDS
ATTGAATGAAGTAAGTAACT+GGG 0.617990 3_1:+20448585 None:intergenic
GTCGTAACGACAAAGGAAGA+AGG 0.621414 3_1:+20448453 None:intergenic
GCATGCAAAATAAACAGGAA+GGG 0.631774 3_1:+20444573 None:intergenic
TTGTAACAAATGCAAAGCGA+CGG 0.632843 3_1:+20445068 None:intergenic
CCTGGGACCTCAAAATCAAG+CGG 0.637264 3_1:-20444678 Msa0352200:CDS
AGTCCTTACAAGGTATATGT+GGG 0.639932 3_1:-20444789 Msa0352200:CDS
GTAAGGACTGTCTACAAATG+CGG 0.643041 3_1:+20444803 None:intergenic
TTCTTCTGAACAAGCCACGG+TGG 0.672547 3_1:-20448403 Msa0352200:CDS
TCATCATTACTAACAGTACG+AGG 0.729772 3_1:+20448342 None:intergenic
GACAGCAGGAGAATCCACCG+TGG 0.827743 3_1:+20448389 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAATTCTTTAAAAGTA+AGG - chr3_1:20445598-20445617 Msa0352200:intron 10.0%
!!! TAAAAAAGTATATTTGAAAA+TGG - chr3_1:20446814-20446833 Msa0352200:intron 10.0%
!!! ATTTAGATTTCAATTTTTTT+TGG - chr3_1:20447502-20447521 Msa0352200:intron 10.0%
!!! TTTAGATTTCAATTTTTTTT+GGG - chr3_1:20447503-20447522 Msa0352200:intron 10.0%
!!! TTAAAAATTCTTTAAAAGTA+AGG - chr3_1:20445598-20445617 Msa0352200:intron 10.0%
!!! TAAAAAAGTATATTTGAAAA+TGG - chr3_1:20446814-20446833 Msa0352200:intron 10.0%
!!! ATTTAGATTTCAATTTTTTT+TGG - chr3_1:20447502-20447521 Msa0352200:intron 10.0%
!!! TTTAGATTTCAATTTTTTTT+GGG - chr3_1:20447503-20447522 Msa0352200:intron 10.0%
!!! TGATTTTGTGAAATTAATTT+TGG - chr3_1:20445017-20445036 Msa0352200:intron 15.0%
!!! AAATTAATTTTGGTTGAAAT+GGG - chr3_1:20445027-20445046 Msa0352200:CDS 15.0%
!! TTCAATATAATTATATGTGT+TGG - chr3_1:20445305-20445324 Msa0352200:intron 15.0%
!! TTTAAAAGTAAGGTTAAAAT+GGG - chr3_1:20445608-20445627 Msa0352200:intron 15.0%
!! AAAATAAGTTGTAAAAAACA+AGG - chr3_1:20445795-20445814 Msa0352200:intron 15.0%
!!! ATTATGTTTAATTTTATCAC+AGG - chr3_1:20446381-20446400 Msa0352200:intron 15.0%
!!! TTTTGATATTAATAGAAGTT+GGG + chr3_1:20446561-20446580 None:intergenic 15.0%
!!! TTAGATTTCAATTTTTTTTG+GGG - chr3_1:20447504-20447523 Msa0352200:intron 15.0%
!!! TTTTTTTATGATTGATTCAT+AGG - chr3_1:20448094-20448113 Msa0352200:intron 15.0%
!!! TGATTTTGTGAAATTAATTT+TGG - chr3_1:20445017-20445036 Msa0352200:intron 15.0%
!!! AAATTAATTTTGGTTGAAAT+GGG - chr3_1:20445027-20445046 Msa0352200:CDS 15.0%
!! TTCAATATAATTATATGTGT+TGG - chr3_1:20445305-20445324 Msa0352200:intron 15.0%
!! TTTAAAAGTAAGGTTAAAAT+GGG - chr3_1:20445608-20445627 Msa0352200:intron 15.0%
!! AAAATAAGTTGTAAAAAACA+AGG - chr3_1:20445795-20445814 Msa0352200:intron 15.0%
!!! ATTATGTTTAATTTTATCAC+AGG - chr3_1:20446381-20446400 Msa0352200:intron 15.0%
!!! TTTTGATATTAATAGAAGTT+GGG + chr3_1:20446561-20446580 None:intergenic 15.0%
!!! TTAGATTTCAATTTTTTTTG+GGG - chr3_1:20447504-20447523 Msa0352200:intron 15.0%
!!! TTTTTTTATGATTGATTCAT+AGG - chr3_1:20448094-20448113 Msa0352200:intron 15.0%
!!! GAAATTAATTTTGGTTGAAA+TGG - chr3_1:20445026-20445045 Msa0352200:CDS 20.0%
!! GAATTGAAGTTTGTAAAATT+AGG - chr3_1:20445412-20445431 Msa0352200:intron 20.0%
!!! CTTCATTTTGAAAAATTAAC+TGG - chr3_1:20445445-20445464 Msa0352200:intron 20.0%
!!! CTTTAAAAGTAAGGTTAAAA+TGG - chr3_1:20445607-20445626 Msa0352200:intron 20.0%
!! AATGTAGTATAATAGATTCA+AGG - chr3_1:20445825-20445844 Msa0352200:intron 20.0%
!! ATAATAGATTCAAGGTAAAA+TGG - chr3_1:20445833-20445852 Msa0352200:intron 20.0%
!! TAATTTCATTTAAGAAGAGA+AGG - chr3_1:20446050-20446069 Msa0352200:intron 20.0%
!! GTATTTCATTTAATAAGAGA+AGG - chr3_1:20446076-20446095 Msa0352200:intron 20.0%
!!! GTTTTGATATTAATAGAAGT+TGG + chr3_1:20446562-20446581 None:intergenic 20.0%
!! AAAACAAAACAAATCAAAGA+AGG - chr3_1:20446587-20446606 Msa0352200:intron 20.0%
!! TCAATACAAGAAAATCATAT+GGG + chr3_1:20446790-20446809 None:intergenic 20.0%
!! ATCAATACAAGAAAATCATA+TGG + chr3_1:20446791-20446810 None:intergenic 20.0%
!!! AAAAGTATATTTGAAAATGG+TGG - chr3_1:20446817-20446836 Msa0352200:intron 20.0%
!!! CTTTTATCATTTTTAATCTG+AGG - chr3_1:20446968-20446987 Msa0352200:intron 20.0%
!!! TAGATTTCAATTTTTTTTGG+GGG - chr3_1:20447505-20447524 Msa0352200:intron 20.0%
!! ATAAAGAGTAAAATTCATTG+AGG + chr3_1:20447863-20447882 None:intergenic 20.0%
!! TGTATGATAAATACTCTAAA+AGG - chr3_1:20448120-20448139 Msa0352200:intron 20.0%
!!! GAAATTAATTTTGGTTGAAA+TGG - chr3_1:20445026-20445045 Msa0352200:CDS 20.0%
!! GAATTGAAGTTTGTAAAATT+AGG - chr3_1:20445412-20445431 Msa0352200:intron 20.0%
!!! CTTCATTTTGAAAAATTAAC+TGG - chr3_1:20445445-20445464 Msa0352200:intron 20.0%
!!! CTTTAAAAGTAAGGTTAAAA+TGG - chr3_1:20445607-20445626 Msa0352200:intron 20.0%
!! AATGTAGTATAATAGATTCA+AGG - chr3_1:20445825-20445844 Msa0352200:intron 20.0%
!! ATAATAGATTCAAGGTAAAA+TGG - chr3_1:20445833-20445852 Msa0352200:intron 20.0%
!! TAATTTCATTTAAGAAGAGA+AGG - chr3_1:20446050-20446069 Msa0352200:intron 20.0%
!! GTATTTCATTTAATAAGAGA+AGG - chr3_1:20446076-20446095 Msa0352200:intron 20.0%
!!! GTTTTGATATTAATAGAAGT+TGG + chr3_1:20446562-20446581 None:intergenic 20.0%
!! AAAACAAAACAAATCAAAGA+AGG - chr3_1:20446587-20446606 Msa0352200:intron 20.0%
!! TCAATACAAGAAAATCATAT+GGG + chr3_1:20446790-20446809 None:intergenic 20.0%
!! ATCAATACAAGAAAATCATA+TGG + chr3_1:20446791-20446810 None:intergenic 20.0%
!!! AAAAGTATATTTGAAAATGG+TGG - chr3_1:20446817-20446836 Msa0352200:intron 20.0%
!!! CTTTTATCATTTTTAATCTG+AGG - chr3_1:20446968-20446987 Msa0352200:intron 20.0%
!!! TAGATTTCAATTTTTTTTGG+GGG - chr3_1:20447505-20447524 Msa0352200:intron 20.0%
!! ATAAAGAGTAAAATTCATTG+AGG + chr3_1:20447863-20447882 None:intergenic 20.0%
!! TGTATGATAAATACTCTAAA+AGG - chr3_1:20448120-20448139 Msa0352200:intron 20.0%
! ATTGAATGAAGTAAGTAACT+GGG + chr3_1:20444631-20444650 None:intergenic 25.0%
! TATAACATTCAGTCTCTTAT+TGG + chr3_1:20445695-20445714 None:intergenic 25.0%
! CAATAAAAGAGTGAATGTTA+CGG - chr3_1:20445719-20445738 Msa0352200:intron 25.0%
! ATTCAAGGTAAAATGGTAAA+TGG - chr3_1:20445840-20445859 Msa0352200:intron 25.0%
! TAAAATGGTAAATGGAACAA+TGG - chr3_1:20445848-20445867 Msa0352200:intron 25.0%
! CACTAAACATAATTTAGCTA+TGG - chr3_1:20445923-20445942 Msa0352200:intron 25.0%
! ACTTCAATACAAACATTATC+AGG - chr3_1:20445983-20446002 Msa0352200:intron 25.0%
! TTTCAACTCCTTTATCTATT+TGG - chr3_1:20446161-20446180 Msa0352200:intron 25.0%
! AAACGAAACCAAATAGATAA+AGG + chr3_1:20446172-20446191 None:intergenic 25.0%
!! TCTGATTTTCCCATATAATT+GGG + chr3_1:20446537-20446556 None:intergenic 25.0%
!! ATCTGATTTTCCCATATAAT+TGG + chr3_1:20446538-20446557 None:intergenic 25.0%
! AAGAAAATCATATGGGTTTA+GGG + chr3_1:20446783-20446802 None:intergenic 25.0%
! AAAGATTCTAGCATCAAAAT+CGG + chr3_1:20446952-20446971 None:intergenic 25.0%
! TTTGAATAAACTTAGACTGT+TGG - chr3_1:20447010-20447029 Msa0352200:intron 25.0%
!! CAAATTAATCTCCTTTTAGT+TGG - chr3_1:20447053-20447072 Msa0352200:intron 25.0%
!!! GATTTTCTGTTTTAAGTTTG+TGG - chr3_1:20447203-20447222 Msa0352200:intron 25.0%
! GGTTACATTAGCATTAAAAT+AGG - chr3_1:20447476-20447495 Msa0352200:intron 25.0%
!!! AGATTTCAATTTTTTTTGGG+GGG - chr3_1:20447506-20447525 Msa0352200:intron 25.0%
! GAAATCAAAATTCTGTTCAA+GGG + chr3_1:20447708-20447727 None:intergenic 25.0%
! TGAAATCAAAATTCTGTTCA+AGG + chr3_1:20447709-20447728 None:intergenic 25.0%
! TTTATAAAGTGAAACTGTTC+AGG - chr3_1:20447878-20447897 Msa0352200:intron 25.0%
! TTATAAAGTGAAACTGTTCA+GGG - chr3_1:20447879-20447898 Msa0352200:intron 25.0%
! TAAGATTTATCCTATAACCT+AGG - chr3_1:20447948-20447967 Msa0352200:intron 25.0%
! AAGATTTATCCTATAACCTA+GGG - chr3_1:20447949-20447968 Msa0352200:intron 25.0%
! AAAACATACAAAGAAAGTTG+AGG + chr3_1:20448025-20448044 None:intergenic 25.0%
! GAATGTTCATTCAACAATTT+AGG - chr3_1:20448261-20448280 Msa0352200:intron 25.0%
!! CAACAATTTAGGTTTCTTAA+AGG - chr3_1:20448272-20448291 Msa0352200:intron 25.0%
! TTTATCTTATGACAGCAAAT+TGG - chr3_1:20448313-20448332 Msa0352200:CDS 25.0%
!! TAGCCTTAAAAATTTCTTCT+CGG - chr3_1:20448474-20448493 Msa0352200:CDS 25.0%
!! TTTCCGAGAAGAAATTTTTA+AGG + chr3_1:20448480-20448499 None:intergenic 25.0%
! ATTGAATGAAGTAAGTAACT+GGG + chr3_1:20444631-20444650 None:intergenic 25.0%
! TATAACATTCAGTCTCTTAT+TGG + chr3_1:20445695-20445714 None:intergenic 25.0%
! CAATAAAAGAGTGAATGTTA+CGG - chr3_1:20445719-20445738 Msa0352200:intron 25.0%
! ATTCAAGGTAAAATGGTAAA+TGG - chr3_1:20445840-20445859 Msa0352200:intron 25.0%
! TAAAATGGTAAATGGAACAA+TGG - chr3_1:20445848-20445867 Msa0352200:intron 25.0%
! CACTAAACATAATTTAGCTA+TGG - chr3_1:20445923-20445942 Msa0352200:intron 25.0%
! ACTTCAATACAAACATTATC+AGG - chr3_1:20445983-20446002 Msa0352200:intron 25.0%
! TTTCAACTCCTTTATCTATT+TGG - chr3_1:20446161-20446180 Msa0352200:intron 25.0%
! AAACGAAACCAAATAGATAA+AGG + chr3_1:20446172-20446191 None:intergenic 25.0%
!! TCTGATTTTCCCATATAATT+GGG + chr3_1:20446537-20446556 None:intergenic 25.0%
!! ATCTGATTTTCCCATATAAT+TGG + chr3_1:20446538-20446557 None:intergenic 25.0%
! AAGAAAATCATATGGGTTTA+GGG + chr3_1:20446783-20446802 None:intergenic 25.0%
! AAAGATTCTAGCATCAAAAT+CGG + chr3_1:20446952-20446971 None:intergenic 25.0%
! TTTGAATAAACTTAGACTGT+TGG - chr3_1:20447010-20447029 Msa0352200:intron 25.0%
!! CAAATTAATCTCCTTTTAGT+TGG - chr3_1:20447053-20447072 Msa0352200:intron 25.0%
!!! GATTTTCTGTTTTAAGTTTG+TGG - chr3_1:20447203-20447222 Msa0352200:intron 25.0%
! GGTTACATTAGCATTAAAAT+AGG - chr3_1:20447476-20447495 Msa0352200:intron 25.0%
!!! AGATTTCAATTTTTTTTGGG+GGG - chr3_1:20447506-20447525 Msa0352200:intron 25.0%
! GAAATCAAAATTCTGTTCAA+GGG + chr3_1:20447708-20447727 None:intergenic 25.0%
! TGAAATCAAAATTCTGTTCA+AGG + chr3_1:20447709-20447728 None:intergenic 25.0%
! TTTATAAAGTGAAACTGTTC+AGG - chr3_1:20447878-20447897 Msa0352200:intron 25.0%
! TTATAAAGTGAAACTGTTCA+GGG - chr3_1:20447879-20447898 Msa0352200:intron 25.0%
! TAAGATTTATCCTATAACCT+AGG - chr3_1:20447948-20447967 Msa0352200:intron 25.0%
! AAGATTTATCCTATAACCTA+GGG - chr3_1:20447949-20447968 Msa0352200:intron 25.0%
! AAAACATACAAAGAAAGTTG+AGG + chr3_1:20448025-20448044 None:intergenic 25.0%
! GAATGTTCATTCAACAATTT+AGG - chr3_1:20448261-20448280 Msa0352200:intron 25.0%
!! CAACAATTTAGGTTTCTTAA+AGG - chr3_1:20448272-20448291 Msa0352200:intron 25.0%
! TTTATCTTATGACAGCAAAT+TGG - chr3_1:20448313-20448332 Msa0352200:CDS 25.0%
!! TAGCCTTAAAAATTTCTTCT+CGG - chr3_1:20448474-20448493 Msa0352200:CDS 25.0%
!! TTTCCGAGAAGAAATTTTTA+AGG + chr3_1:20448480-20448499 None:intergenic 25.0%
AGTTTATCTCGTTATCTTGT+TGG + chr3_1:20444586-20444605 None:intergenic 30.0%
GATTGAATGAAGTAAGTAAC+TGG + chr3_1:20444632-20444651 None:intergenic 30.0%
TTGTTTGTAATGAGGAATTG+AGG + chr3_1:20444654-20444673 None:intergenic 30.0%
CAATTCCTCATTACAAACAA+TGG - chr3_1:20444654-20444673 Msa0352200:CDS 30.0%
!! GTAATTTGTTTGACCAATAG+CGG - chr3_1:20445109-20445128 Msa0352200:intron 30.0%
!!! AGTTTTGTTAGATCTCTTGT+AGG - chr3_1:20445187-20445206 Msa0352200:intron 30.0%
!! GTTTTGTTAGATCTCTTGTA+GGG - chr3_1:20445188-20445207 Msa0352200:intron 30.0%
! TTTTGTTAGATCTCTTGTAG+GGG - chr3_1:20445189-20445208 Msa0352200:intron 30.0%
! TAAAATGGGTTTGTTCAATG+TGG - chr3_1:20445622-20445641 Msa0352200:intron 30.0%
! AAAATGGGTTTGTTCAATGT+GGG - chr3_1:20445623-20445642 Msa0352200:intron 30.0%
! TTATTGGCTGAAACTCATAT+GGG + chr3_1:20445679-20445698 None:intergenic 30.0%
! CGTAACATTCACTCTTTTAT+TGG + chr3_1:20445721-20445740 None:intergenic 30.0%
ATAATGAGAGAAGTCTTTAG+TGG - chr3_1:20446505-20446524 Msa0352200:intron 30.0%
TAATGAGAGAAGTCTTTAGT+GGG - chr3_1:20446506-20446525 Msa0352200:intron 30.0%
CAAAACAAATCAAAGAAGGT+CGG - chr3_1:20446591-20446610 Msa0352200:intron 30.0%
CAAGAAAATCATATGGGTTT+AGG + chr3_1:20446784-20446803 None:intergenic 30.0%
TGTTTCAGTTGTTTGTTTAG+AGG - chr3_1:20446840-20446859 Msa0352200:intron 30.0%
GTTTCAGTTGTTTGTTTAGA+GGG - chr3_1:20446841-20446860 Msa0352200:intron 30.0%
TTGTTTGTTTAGAGGGATTT+GGG - chr3_1:20446848-20446867 Msa0352200:intron 30.0%
!! TGGATTTGCTTATTTCTGTT+AGG - chr3_1:20446895-20446914 Msa0352200:intron 30.0%
!! GGATTTGCTTATTTCTGTTA+GGG - chr3_1:20446896-20446915 Msa0352200:intron 30.0%
!! GATTTGCTTATTTCTGTTAG+GGG - chr3_1:20446897-20446916 Msa0352200:intron 30.0%
!! ATTTGCTTATTTCTGTTAGG+GGG - chr3_1:20446898-20446917 Msa0352200:intron 30.0%
! CATTTTTAATCTGAGGAAGT+TGG - chr3_1:20446975-20446994 Msa0352200:intron 30.0%
ATCATTGAGAACCAACTAAA+AGG + chr3_1:20447067-20447086 None:intergenic 30.0%
TGGATATGATGTGTGTATTA+TGG - chr3_1:20447136-20447155 Msa0352200:intron 30.0%
!!! GATTTCAATTTTTTTTGGGG+GGG - chr3_1:20447507-20447526 Msa0352200:intron 30.0%
!!! ATTTCAATTTTTTTTGGGGG+GGG - chr3_1:20447508-20447527 Msa0352200:intron 30.0%
CATAAGCATTAATGTAGTAG+TGG - chr3_1:20447727-20447746 Msa0352200:intron 30.0%
TATACTTGATAGACTAAGGT+AGG + chr3_1:20447773-20447792 None:intergenic 30.0%
AAGCTATACTTGATAGACTA+AGG + chr3_1:20447777-20447796 None:intergenic 30.0%
GTCTATCAAGTATAGCTTAA+AGG - chr3_1:20447779-20447798 Msa0352200:intron 30.0%
TATAAAGTGAAACTGTTCAG+GGG - chr3_1:20447880-20447899 Msa0352200:intron 30.0%
TGTTCAGTTCACATTATCAA+CGG + chr3_1:20447920-20447939 None:intergenic 30.0%
! TCCTGTTGTTAAAGGTTTTT+CGG + chr3_1:20448365-20448384 None:intergenic 30.0%
!!! GAAATTTTTAAGGCTATCAG+AGG + chr3_1:20448470-20448489 None:intergenic 30.0%
!!! TGTTACTTTTTCATCAGATG+AGG - chr3_1:20448567-20448586 Msa0352200:five_prime_UTR 30.0%
TTTCAGCATGCAAAATAAAC+AGG + chr3_1:20448648-20448667 None:intergenic 30.0%
AGTTTATCTCGTTATCTTGT+TGG + chr3_1:20444586-20444605 None:intergenic 30.0%
GATTGAATGAAGTAAGTAAC+TGG + chr3_1:20444632-20444651 None:intergenic 30.0%
TTGTTTGTAATGAGGAATTG+AGG + chr3_1:20444654-20444673 None:intergenic 30.0%
CAATTCCTCATTACAAACAA+TGG - chr3_1:20444654-20444673 Msa0352200:CDS 30.0%
!! GTAATTTGTTTGACCAATAG+CGG - chr3_1:20445109-20445128 Msa0352200:intron 30.0%
!!! AGTTTTGTTAGATCTCTTGT+AGG - chr3_1:20445187-20445206 Msa0352200:intron 30.0%
!! GTTTTGTTAGATCTCTTGTA+GGG - chr3_1:20445188-20445207 Msa0352200:intron 30.0%
! TTTTGTTAGATCTCTTGTAG+GGG - chr3_1:20445189-20445208 Msa0352200:intron 30.0%
! TAAAATGGGTTTGTTCAATG+TGG - chr3_1:20445622-20445641 Msa0352200:intron 30.0%
! AAAATGGGTTTGTTCAATGT+GGG - chr3_1:20445623-20445642 Msa0352200:intron 30.0%
! TTATTGGCTGAAACTCATAT+GGG + chr3_1:20445679-20445698 None:intergenic 30.0%
! CGTAACATTCACTCTTTTAT+TGG + chr3_1:20445721-20445740 None:intergenic 30.0%
ATAATGAGAGAAGTCTTTAG+TGG - chr3_1:20446505-20446524 Msa0352200:intron 30.0%
TAATGAGAGAAGTCTTTAGT+GGG - chr3_1:20446506-20446525 Msa0352200:intron 30.0%
CAAAACAAATCAAAGAAGGT+CGG - chr3_1:20446591-20446610 Msa0352200:intron 30.0%
CAAGAAAATCATATGGGTTT+AGG + chr3_1:20446784-20446803 None:intergenic 30.0%
TGTTTCAGTTGTTTGTTTAG+AGG - chr3_1:20446840-20446859 Msa0352200:intron 30.0%
GTTTCAGTTGTTTGTTTAGA+GGG - chr3_1:20446841-20446860 Msa0352200:intron 30.0%
TTGTTTGTTTAGAGGGATTT+GGG - chr3_1:20446848-20446867 Msa0352200:intron 30.0%
!! TGGATTTGCTTATTTCTGTT+AGG - chr3_1:20446895-20446914 Msa0352200:intron 30.0%
!! GGATTTGCTTATTTCTGTTA+GGG - chr3_1:20446896-20446915 Msa0352200:intron 30.0%
!! GATTTGCTTATTTCTGTTAG+GGG - chr3_1:20446897-20446916 Msa0352200:intron 30.0%
!! ATTTGCTTATTTCTGTTAGG+GGG - chr3_1:20446898-20446917 Msa0352200:intron 30.0%
! CATTTTTAATCTGAGGAAGT+TGG - chr3_1:20446975-20446994 Msa0352200:intron 30.0%
ATCATTGAGAACCAACTAAA+AGG + chr3_1:20447067-20447086 None:intergenic 30.0%
TGGATATGATGTGTGTATTA+TGG - chr3_1:20447136-20447155 Msa0352200:intron 30.0%
!!! GATTTCAATTTTTTTTGGGG+GGG - chr3_1:20447507-20447526 Msa0352200:intron 30.0%
!!! ATTTCAATTTTTTTTGGGGG+GGG - chr3_1:20447508-20447527 Msa0352200:intron 30.0%
CATAAGCATTAATGTAGTAG+TGG - chr3_1:20447727-20447746 Msa0352200:intron 30.0%
TATACTTGATAGACTAAGGT+AGG + chr3_1:20447773-20447792 None:intergenic 30.0%
AAGCTATACTTGATAGACTA+AGG + chr3_1:20447777-20447796 None:intergenic 30.0%
GTCTATCAAGTATAGCTTAA+AGG - chr3_1:20447779-20447798 Msa0352200:intron 30.0%
TATAAAGTGAAACTGTTCAG+GGG - chr3_1:20447880-20447899 Msa0352200:intron 30.0%
TGTTCAGTTCACATTATCAA+CGG + chr3_1:20447920-20447939 None:intergenic 30.0%
! TCCTGTTGTTAAAGGTTTTT+CGG + chr3_1:20448365-20448384 None:intergenic 30.0%
!!! GAAATTTTTAAGGCTATCAG+AGG + chr3_1:20448470-20448489 None:intergenic 30.0%
!!! TGTTACTTTTTCATCAGATG+AGG - chr3_1:20448567-20448586 Msa0352200:five_prime_UTR 30.0%
TTTCAGCATGCAAAATAAAC+AGG + chr3_1:20448648-20448667 None:intergenic 30.0%
TTATCTCGTTATCTTGTTGG+TGG + chr3_1:20444583-20444602 None:intergenic 35.0%
AGAAGCCATTGTTTGTAATG+AGG + chr3_1:20444662-20444681 None:intergenic 35.0%
! AAGTGTTGTGAGTTAGAGAA+AGG + chr3_1:20444705-20444724 None:intergenic 35.0%
!!! TGTTGTCGTTTTGGGTTTTA+GGG + chr3_1:20444740-20444759 None:intergenic 35.0%
TCATCATTACTAACAGTACG+AGG + chr3_1:20444874-20444893 None:intergenic 35.0%
ACCATGTTCTTGAACAATCT+TGG + chr3_1:20444902-20444921 None:intergenic 35.0%
!! AAAGCTGAGGTACTTTTTGT+TGG - chr3_1:20444931-20444950 Msa0352200:intron 35.0%
!! TATATGTGTTGGTGTTGTGT+CGG - chr3_1:20445316-20445335 Msa0352200:intron 35.0%
! CTTATTGGCTGAAACTCATA+TGG + chr3_1:20445680-20445699 None:intergenic 35.0%
GGTGAGTGTTAGAAAGAAAA+TGG - chr3_1:20445740-20445759 Msa0352200:intron 35.0%
! AGTACGAAGAAAACTTGCTT+TGG - chr3_1:20445881-20445900 Msa0352200:intron 35.0%
! AGAAAACTTGCTTTGGCTAA+TGG - chr3_1:20445888-20445907 Msa0352200:intron 35.0%
CTCTTTGTAAATGATCACAC+AGG + chr3_1:20446232-20446251 None:intergenic 35.0%
CTGTGTGATCATTTACAAAG+AGG - chr3_1:20446230-20446249 Msa0352200:intron 35.0%
GTCTTGAATTAGAACCTTAC+AGG - chr3_1:20446268-20446287 Msa0352200:intron 35.0%
CCTTCAGCAAAAAAAGTTGA+GGG + chr3_1:20446463-20446482 None:intergenic 35.0%
!! TGGGAAGTACCCAATTATAT+GGG - chr3_1:20446525-20446544 Msa0352200:intron 35.0%
! ACCGTCTCTTAACTTGAATT+CGG - chr3_1:20446711-20446730 Msa0352200:intron 35.0%
GTTGTTTGTTTAGAGGGATT+TGG - chr3_1:20446847-20446866 Msa0352200:intron 35.0%
! TTAGCACTGAAGTGTTTGAA+TGG - chr3_1:20446875-20446894 Msa0352200:intron 35.0%
!!! CTGTTGGAGTTTTGTTTTCA+AGG - chr3_1:20447026-20447045 Msa0352200:intron 35.0%
CACACATCATATCCAATCTA+CGG + chr3_1:20447131-20447150 None:intergenic 35.0%
TTGTACTTCTTACCAAAGCA+AGG + chr3_1:20447180-20447199 None:intergenic 35.0%
!!! TTTCAATTTTTTTTGGGGGG+GGG - chr3_1:20447509-20447528 Msa0352200:intron 35.0%
!! AACAGTAAACTTGTTGTCGT+TGG - chr3_1:20447549-20447568 Msa0352200:intron 35.0%
TGCCTCTTGTGTAAAAAACA+GGG - chr3_1:20447604-20447623 Msa0352200:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + chr3_1:20447609-20447628 None:intergenic 35.0%
AAGCATTAATGTAGTAGTGG+TGG - chr3_1:20447730-20447749 Msa0352200:intron 35.0%
AACTCAAATCCCTAGGTTAT+AGG + chr3_1:20447961-20447980 None:intergenic 35.0%
! ACCTAGGGATTTGAGTTAAT+AGG - chr3_1:20447964-20447983 Msa0352200:intron 35.0%
! CCTAGGGATTTGAGTTAATA+GGG - chr3_1:20447965-20447984 Msa0352200:intron 35.0%
! CTAGGGATTTGAGTTAATAG+GGG - chr3_1:20447966-20447985 Msa0352200:intron 35.0%
CTTGATGCTCTCAATATTTG+CGG + chr3_1:20448061-20448080 None:intergenic 35.0%
TTGTAACAAATGCAAAGCGA+CGG + chr3_1:20448148-20448167 None:intergenic 35.0%
TGTTACAATGAAAACCGTTG+AGG - chr3_1:20448160-20448179 Msa0352200:intron 35.0%
ATCTTATGACAGCAAATTGG+AGG - chr3_1:20448316-20448335 Msa0352200:CDS 35.0%
TCTTATGACAGCAAATTGGA+GGG - chr3_1:20448317-20448336 Msa0352200:CDS 35.0%
ACCGAAAAACCTTTAACAAC+AGG - chr3_1:20448361-20448380 Msa0352200:CDS 35.0%
GAAAAACCTTTAACAACAGG+AGG - chr3_1:20448364-20448383 Msa0352200:CDS 35.0%
ATTTGTAGACAGTCCTTACA+AGG - chr3_1:20448414-20448433 Msa0352200:CDS 35.0%
AGTCCTTACAAGGTATATGT+GGG - chr3_1:20448424-20448443 Msa0352200:CDS 35.0%
TTTCCCACATATACCTTGTA+AGG + chr3_1:20448430-20448449 None:intergenic 35.0%
GCATGCAAAATAAACAGGAA+GGG + chr3_1:20448643-20448662 None:intergenic 35.0%
AGCATGCAAAATAAACAGGA+AGG + chr3_1:20448644-20448663 None:intergenic 35.0%
TTATCTCGTTATCTTGTTGG+TGG + chr3_1:20444583-20444602 None:intergenic 35.0%
AGAAGCCATTGTTTGTAATG+AGG + chr3_1:20444662-20444681 None:intergenic 35.0%
! AAGTGTTGTGAGTTAGAGAA+AGG + chr3_1:20444705-20444724 None:intergenic 35.0%
!!! TGTTGTCGTTTTGGGTTTTA+GGG + chr3_1:20444740-20444759 None:intergenic 35.0%
TCATCATTACTAACAGTACG+AGG + chr3_1:20444874-20444893 None:intergenic 35.0%
ACCATGTTCTTGAACAATCT+TGG + chr3_1:20444902-20444921 None:intergenic 35.0%
!! AAAGCTGAGGTACTTTTTGT+TGG - chr3_1:20444931-20444950 Msa0352200:intron 35.0%
!! TATATGTGTTGGTGTTGTGT+CGG - chr3_1:20445316-20445335 Msa0352200:intron 35.0%
! CTTATTGGCTGAAACTCATA+TGG + chr3_1:20445680-20445699 None:intergenic 35.0%
GGTGAGTGTTAGAAAGAAAA+TGG - chr3_1:20445740-20445759 Msa0352200:intron 35.0%
! AGTACGAAGAAAACTTGCTT+TGG - chr3_1:20445881-20445900 Msa0352200:intron 35.0%
! AGAAAACTTGCTTTGGCTAA+TGG - chr3_1:20445888-20445907 Msa0352200:intron 35.0%
CTCTTTGTAAATGATCACAC+AGG + chr3_1:20446232-20446251 None:intergenic 35.0%
CTGTGTGATCATTTACAAAG+AGG - chr3_1:20446230-20446249 Msa0352200:intron 35.0%
GTCTTGAATTAGAACCTTAC+AGG - chr3_1:20446268-20446287 Msa0352200:intron 35.0%
CCTTCAGCAAAAAAAGTTGA+GGG + chr3_1:20446463-20446482 None:intergenic 35.0%
!! TGGGAAGTACCCAATTATAT+GGG - chr3_1:20446525-20446544 Msa0352200:intron 35.0%
! ACCGTCTCTTAACTTGAATT+CGG - chr3_1:20446711-20446730 Msa0352200:intron 35.0%
GTTGTTTGTTTAGAGGGATT+TGG - chr3_1:20446847-20446866 Msa0352200:intron 35.0%
! TTAGCACTGAAGTGTTTGAA+TGG - chr3_1:20446875-20446894 Msa0352200:intron 35.0%
!!! CTGTTGGAGTTTTGTTTTCA+AGG - chr3_1:20447026-20447045 Msa0352200:intron 35.0%
CACACATCATATCCAATCTA+CGG + chr3_1:20447131-20447150 None:intergenic 35.0%
TTGTACTTCTTACCAAAGCA+AGG + chr3_1:20447180-20447199 None:intergenic 35.0%
!!! TTTCAATTTTTTTTGGGGGG+GGG - chr3_1:20447509-20447528 Msa0352200:intron 35.0%
!! AACAGTAAACTTGTTGTCGT+TGG - chr3_1:20447549-20447568 Msa0352200:intron 35.0%
TGCCTCTTGTGTAAAAAACA+GGG - chr3_1:20447604-20447623 Msa0352200:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + chr3_1:20447609-20447628 None:intergenic 35.0%
AAGCATTAATGTAGTAGTGG+TGG - chr3_1:20447730-20447749 Msa0352200:intron 35.0%
AACTCAAATCCCTAGGTTAT+AGG + chr3_1:20447961-20447980 None:intergenic 35.0%
! ACCTAGGGATTTGAGTTAAT+AGG - chr3_1:20447964-20447983 Msa0352200:intron 35.0%
! CCTAGGGATTTGAGTTAATA+GGG - chr3_1:20447965-20447984 Msa0352200:intron 35.0%
! CTAGGGATTTGAGTTAATAG+GGG - chr3_1:20447966-20447985 Msa0352200:intron 35.0%
CTTGATGCTCTCAATATTTG+CGG + chr3_1:20448061-20448080 None:intergenic 35.0%
TTGTAACAAATGCAAAGCGA+CGG + chr3_1:20448148-20448167 None:intergenic 35.0%
TGTTACAATGAAAACCGTTG+AGG - chr3_1:20448160-20448179 Msa0352200:intron 35.0%
ATCTTATGACAGCAAATTGG+AGG - chr3_1:20448316-20448335 Msa0352200:CDS 35.0%
TCTTATGACAGCAAATTGGA+GGG - chr3_1:20448317-20448336 Msa0352200:CDS 35.0%
ACCGAAAAACCTTTAACAAC+AGG - chr3_1:20448361-20448380 Msa0352200:CDS 35.0%
GAAAAACCTTTAACAACAGG+AGG - chr3_1:20448364-20448383 Msa0352200:CDS 35.0%
ATTTGTAGACAGTCCTTACA+AGG - chr3_1:20448414-20448433 Msa0352200:CDS 35.0%
AGTCCTTACAAGGTATATGT+GGG - chr3_1:20448424-20448443 Msa0352200:CDS 35.0%
TTTCCCACATATACCTTGTA+AGG + chr3_1:20448430-20448449 None:intergenic 35.0%
GCATGCAAAATAAACAGGAA+GGG + chr3_1:20448643-20448662 None:intergenic 35.0%
AGCATGCAAAATAAACAGGA+AGG + chr3_1:20448644-20448663 None:intergenic 35.0%
AAGTAAGTAACTGGGAGTAG+TGG + chr3_1:20444623-20444642 None:intergenic 40.0%
!!! GGGTTTTAGGGTAAAGTTTG+TGG + chr3_1:20444728-20444747 None:intergenic 40.0%
!!! GTGTTGTCGTTTTGGGTTTT+AGG + chr3_1:20444741-20444760 None:intergenic 40.0%
!!! GAAGAAGGTGTTGTCGTTTT+GGG + chr3_1:20444748-20444767 None:intergenic 40.0%
TGTTTCTTCTGAACAAGCCA+CGG - chr3_1:20444807-20444826 Msa0352200:CDS 40.0%
! ACATAGAGTTTTCTGACAGC+AGG + chr3_1:20444841-20444860 None:intergenic 40.0%
GCTGTCAGAAAACTCTATGT+TGG - chr3_1:20444841-20444860 Msa0352200:CDS 40.0%
GCCAAGATTGTTCAAGAACA+TGG - chr3_1:20444898-20444917 Msa0352200:intron 40.0%
ATTTGTTTGACCAATAGCGG+TGG - chr3_1:20445112-20445131 Msa0352200:intron 40.0%
CATAGACTAATCTCTCATGC+CGG + chr3_1:20445371-20445390 None:intergenic 40.0%
GCACACTTAAGAACGTAAAG+TGG - chr3_1:20445648-20445667 Msa0352200:intron 40.0%
!! TGCTTTGGCTAATGGACTTA+AGG - chr3_1:20445896-20445915 Msa0352200:intron 40.0%
TCTGCTGAGGATTTCTAATG+CGG + chr3_1:20446294-20446313 None:intergenic 40.0%
CTTGCTTATTTAGTCTGCTG+AGG + chr3_1:20446307-20446326 None:intergenic 40.0%
! TTATCACAGGAGTGCATTGT+AGG - chr3_1:20446394-20446413 Msa0352200:intron 40.0%
GCAAAAAAAGTTGAGGGAGA+GGG + chr3_1:20446457-20446476 None:intergenic 40.0%
AGCAAAAAAAGTTGAGGGAG+AGG + chr3_1:20446458-20446477 None:intergenic 40.0%
!!! CCCTCAACTTTTTTTGCTGA+AGG - chr3_1:20446460-20446479 Msa0352200:intron 40.0%
GCCTTCAGCAAAAAAAGTTG+AGG + chr3_1:20446464-20446483 None:intergenic 40.0%
TTGCTGAAGGCAGAAAGAAA+TGG - chr3_1:20446473-20446492 Msa0352200:intron 40.0%
TGCTGAAGGCAGAAAGAAAT+GGG - chr3_1:20446474-20446493 Msa0352200:intron 40.0%
!! GTGGGAAGTACCCAATTATA+TGG - chr3_1:20446524-20446543 Msa0352200:intron 40.0%
AGAGGAAGAGGATAAAGAAG+AGG + chr3_1:20446684-20446703 None:intergenic 40.0%
TAAGAGACGGTAAGAGAAAG+AGG + chr3_1:20446702-20446721 None:intergenic 40.0%
! CCCGAATTCAAGTTAAGAGA+CGG + chr3_1:20446715-20446734 None:intergenic 40.0%
! CCGTCTCTTAACTTGAATTC+GGG - chr3_1:20446712-20446731 Msa0352200:intron 40.0%
! TTGAATTCGGGTATTTTCCG+CGG - chr3_1:20446724-20446743 Msa0352200:intron 40.0%
ATTTGAAAGATCTCTCACCG+CGG + chr3_1:20446744-20446763 None:intergenic 40.0%
TCCTACTCATATCCGTAGAT+TGG - chr3_1:20447116-20447135 Msa0352200:intron 40.0%
TCCAATCTACGGATATGAGT+AGG + chr3_1:20447120-20447139 None:intergenic 40.0%
! TTGTGGCTGTTTATCCCTTT+TGG - chr3_1:20447220-20447239 Msa0352200:intron 40.0%
TCTTGTCTTGCAGACCAAAA+GGG + chr3_1:20447237-20447256 None:intergenic 40.0%
ATCTTGTCTTGCAGACCAAA+AGG + chr3_1:20447238-20447257 None:intergenic 40.0%
TGGTCTGCAAGACAAGATTA+AGG - chr3_1:20447240-20447259 Msa0352200:intron 40.0%
CCATTAATGTGCGATGCAAA+TGG + chr3_1:20447338-20447357 None:intergenic 40.0%
CCATTTGCATCGCACATTAA+TGG - chr3_1:20447335-20447354 Msa0352200:intron 40.0%
TGCTAATGTAACCTTTGCCA+GGG + chr3_1:20447469-20447488 None:intergenic 40.0%
ATGCTAATGTAACCTTTGCC+AGG + chr3_1:20447470-20447489 None:intergenic 40.0%
!!! TTCAATTTTTTTTGGGGGGG+GGG - chr3_1:20447510-20447529 Msa0352200:intron 40.0%
GCAGTTTCAAGAACTTGAAC+CGG + chr3_1:20447587-20447606 None:intergenic 40.0%
CTGCCTCTTGTGTAAAAAAC+AGG - chr3_1:20447603-20447622 Msa0352200:intron 40.0%
ACTGCTCACAATACACCAAA+TGG - chr3_1:20447631-20447650 Msa0352200:intron 40.0%
CTCACAATACACCAAATGGT+GGG - chr3_1:20447635-20447654 Msa0352200:intron 40.0%
CCCTATTAACTCAAATCCCT+AGG + chr3_1:20447968-20447987 None:intergenic 40.0%
GTAAGGACTGTCTACAAATG+CGG + chr3_1:20448413-20448432 None:intergenic 40.0%
CAGTCCTTACAAGGTATATG+TGG - chr3_1:20448423-20448442 Msa0352200:CDS 40.0%
CAAGGTATATGTGGGAAATC+TGG - chr3_1:20448432-20448451 Msa0352200:CDS 40.0%
! ACCTCAAAATCAAGCGGTTT+TGG - chr3_1:20448541-20448560 Msa0352200:CDS 40.0%
AAGTAAGTAACTGGGAGTAG+TGG + chr3_1:20444623-20444642 None:intergenic 40.0%
!!! GGGTTTTAGGGTAAAGTTTG+TGG + chr3_1:20444728-20444747 None:intergenic 40.0%
!!! GTGTTGTCGTTTTGGGTTTT+AGG + chr3_1:20444741-20444760 None:intergenic 40.0%
!!! GAAGAAGGTGTTGTCGTTTT+GGG + chr3_1:20444748-20444767 None:intergenic 40.0%
TGTTTCTTCTGAACAAGCCA+CGG - chr3_1:20444807-20444826 Msa0352200:CDS 40.0%
! ACATAGAGTTTTCTGACAGC+AGG + chr3_1:20444841-20444860 None:intergenic 40.0%
GCTGTCAGAAAACTCTATGT+TGG - chr3_1:20444841-20444860 Msa0352200:CDS 40.0%
GCCAAGATTGTTCAAGAACA+TGG - chr3_1:20444898-20444917 Msa0352200:intron 40.0%
ATTTGTTTGACCAATAGCGG+TGG - chr3_1:20445112-20445131 Msa0352200:intron 40.0%
CATAGACTAATCTCTCATGC+CGG + chr3_1:20445371-20445390 None:intergenic 40.0%
GCACACTTAAGAACGTAAAG+TGG - chr3_1:20445648-20445667 Msa0352200:intron 40.0%
!! TGCTTTGGCTAATGGACTTA+AGG - chr3_1:20445896-20445915 Msa0352200:intron 40.0%
TCTGCTGAGGATTTCTAATG+CGG + chr3_1:20446294-20446313 None:intergenic 40.0%
CTTGCTTATTTAGTCTGCTG+AGG + chr3_1:20446307-20446326 None:intergenic 40.0%
! TTATCACAGGAGTGCATTGT+AGG - chr3_1:20446394-20446413 Msa0352200:intron 40.0%
GCAAAAAAAGTTGAGGGAGA+GGG + chr3_1:20446457-20446476 None:intergenic 40.0%
AGCAAAAAAAGTTGAGGGAG+AGG + chr3_1:20446458-20446477 None:intergenic 40.0%
!!! CCCTCAACTTTTTTTGCTGA+AGG - chr3_1:20446460-20446479 Msa0352200:intron 40.0%
GCCTTCAGCAAAAAAAGTTG+AGG + chr3_1:20446464-20446483 None:intergenic 40.0%
TTGCTGAAGGCAGAAAGAAA+TGG - chr3_1:20446473-20446492 Msa0352200:intron 40.0%
TGCTGAAGGCAGAAAGAAAT+GGG - chr3_1:20446474-20446493 Msa0352200:intron 40.0%
!! GTGGGAAGTACCCAATTATA+TGG - chr3_1:20446524-20446543 Msa0352200:intron 40.0%
AGAGGAAGAGGATAAAGAAG+AGG + chr3_1:20446684-20446703 None:intergenic 40.0%
TAAGAGACGGTAAGAGAAAG+AGG + chr3_1:20446702-20446721 None:intergenic 40.0%
! CCCGAATTCAAGTTAAGAGA+CGG + chr3_1:20446715-20446734 None:intergenic 40.0%
! CCGTCTCTTAACTTGAATTC+GGG - chr3_1:20446712-20446731 Msa0352200:intron 40.0%
! TTGAATTCGGGTATTTTCCG+CGG - chr3_1:20446724-20446743 Msa0352200:intron 40.0%
ATTTGAAAGATCTCTCACCG+CGG + chr3_1:20446744-20446763 None:intergenic 40.0%
TCCTACTCATATCCGTAGAT+TGG - chr3_1:20447116-20447135 Msa0352200:intron 40.0%
TCCAATCTACGGATATGAGT+AGG + chr3_1:20447120-20447139 None:intergenic 40.0%
! TTGTGGCTGTTTATCCCTTT+TGG - chr3_1:20447220-20447239 Msa0352200:intron 40.0%
TCTTGTCTTGCAGACCAAAA+GGG + chr3_1:20447237-20447256 None:intergenic 40.0%
ATCTTGTCTTGCAGACCAAA+AGG + chr3_1:20447238-20447257 None:intergenic 40.0%
TGGTCTGCAAGACAAGATTA+AGG - chr3_1:20447240-20447259 Msa0352200:intron 40.0%
CCATTAATGTGCGATGCAAA+TGG + chr3_1:20447338-20447357 None:intergenic 40.0%
CCATTTGCATCGCACATTAA+TGG - chr3_1:20447335-20447354 Msa0352200:intron 40.0%
TGCTAATGTAACCTTTGCCA+GGG + chr3_1:20447469-20447488 None:intergenic 40.0%
ATGCTAATGTAACCTTTGCC+AGG + chr3_1:20447470-20447489 None:intergenic 40.0%
!!! TTCAATTTTTTTTGGGGGGG+GGG - chr3_1:20447510-20447529 Msa0352200:intron 40.0%
GCAGTTTCAAGAACTTGAAC+CGG + chr3_1:20447587-20447606 None:intergenic 40.0%
CTGCCTCTTGTGTAAAAAAC+AGG - chr3_1:20447603-20447622 Msa0352200:intron 40.0%
ACTGCTCACAATACACCAAA+TGG - chr3_1:20447631-20447650 Msa0352200:intron 40.0%
CTCACAATACACCAAATGGT+GGG - chr3_1:20447635-20447654 Msa0352200:intron 40.0%
CCCTATTAACTCAAATCCCT+AGG + chr3_1:20447968-20447987 None:intergenic 40.0%
GTAAGGACTGTCTACAAATG+CGG + chr3_1:20448413-20448432 None:intergenic 40.0%
CAGTCCTTACAAGGTATATG+TGG - chr3_1:20448423-20448442 Msa0352200:CDS 40.0%
CAAGGTATATGTGGGAAATC+TGG - chr3_1:20448432-20448451 Msa0352200:CDS 40.0%
! ACCTCAAAATCAAGCGGTTT+TGG - chr3_1:20448541-20448560 Msa0352200:CDS 40.0%
!! CGTTATCTTGTTGGTGGTGT+TGG + chr3_1:20444577-20444596 None:intergenic 45.0%
!!! GGAAGAAGGTGTTGTCGTTT+TGG + chr3_1:20444749-20444768 None:intergenic 45.0%
GTCGTAACGACAAAGGAAGA+AGG + chr3_1:20444763-20444782 None:intergenic 45.0%
!! TGGTGCTGTTGAAAAAGCTG+AGG - chr3_1:20444918-20444937 Msa0352200:intron 45.0%
GAATTCGAATCCAGAACCTC+CGG + chr3_1:20445154-20445173 None:intergenic 45.0%
CGTATCCATGCTTCATTGAG+CGG + chr3_1:20445221-20445240 None:intergenic 45.0%
CGCTCAATGAAGCATGGATA+CGG - chr3_1:20445219-20445238 Msa0352200:intron 45.0%
! CCTCTCATTGTTGTTCTAGC+CGG - chr3_1:20445349-20445368 Msa0352200:intron 45.0%
TGCTGTTCTCATTCTCAGAG+TGG - chr3_1:20446015-20446034 Msa0352200:intron 45.0%
GATTTCTAATGCGGCCTGTA+AGG + chr3_1:20446285-20446304 None:intergenic 45.0%
! CTTTGGAGAAAAGAGTGTGG+CGG + chr3_1:20446629-20446648 None:intergenic 45.0%
! GCCACACTCTTTTCTCCAAA+GGG - chr3_1:20446628-20446647 Msa0352200:intron 45.0%
! CCACACTCTTTTCTCCAAAG+GGG - chr3_1:20446629-20446648 Msa0352200:intron 45.0%
! CTCTTTTCTCCAAAGGGGTT+TGG - chr3_1:20446634-20446653 Msa0352200:intron 45.0%
ATACCAAAGCCAAACCCCTT+TGG + chr3_1:20446646-20446665 None:intergenic 45.0%
ACGGTAAGAGAAAGAGGAAG+AGG + chr3_1:20446696-20446715 None:intergenic 45.0%
!! TGCTTATTTCTGTTAGGGGG+AGG - chr3_1:20446901-20446920 Msa0352200:intron 45.0%
!! GCTTATTTCTGTTAGGGGGA+GGG - chr3_1:20446902-20446921 Msa0352200:intron 45.0%
GTATTATGGTGCTCCTTTCG+AGG - chr3_1:20447150-20447169 Msa0352200:intron 45.0%
AAAGCAAGGTTCTCCTCGAA+AGG + chr3_1:20447166-20447185 None:intergenic 45.0%
TTTCGAGGAGAACCTTGCTT+TGG - chr3_1:20447165-20447184 Msa0352200:intron 45.0%
ATCTCTGTGCAGTGAAACAG+TGG - chr3_1:20447294-20447313 Msa0352200:intron 45.0%
! ACACTTCTGTTTTCTCTCCC+TGG - chr3_1:20447449-20447468 Msa0352200:intron 45.0%
!!! TCAATTTTTTTTGGGGGGGG+GGG - chr3_1:20447511-20447530 Msa0352200:intron 45.0%
! CTTGTTGTCGTTGGACTGAA+AGG - chr3_1:20447558-20447577 Msa0352200:intron 45.0%
GCTCACAATACACCAAATGG+TGG - chr3_1:20447634-20447653 Msa0352200:intron 45.0%
! AATGTAGTAGTGGTGGTGAC+TGG - chr3_1:20447737-20447756 Msa0352200:intron 45.0%
GGCAAACCTCCTGTTGTTAA+AGG + chr3_1:20448373-20448392 None:intergenic 45.0%
GTCTACAAATGCGGATTCCT+CGG + chr3_1:20448404-20448423 None:intergenic 45.0%
AGCAAATGCTCTTAGTGCCA+AGG - chr3_1:20448501-20448520 Msa0352200:CDS 45.0%
CTCTTAGTGCCAAGGTTTCA+CGG - chr3_1:20448509-20448528 Msa0352200:CDS 45.0%
TCTTAGTGCCAAGGTTTCAC+GGG - chr3_1:20448510-20448529 Msa0352200:CDS 45.0%
! GCCAAAACCGCTTGATTTTG+AGG + chr3_1:20448545-20448564 None:intergenic 45.0%
!! CGTTATCTTGTTGGTGGTGT+TGG + chr3_1:20444577-20444596 None:intergenic 45.0%
!!! GGAAGAAGGTGTTGTCGTTT+TGG + chr3_1:20444749-20444768 None:intergenic 45.0%
GTCGTAACGACAAAGGAAGA+AGG + chr3_1:20444763-20444782 None:intergenic 45.0%
!! TGGTGCTGTTGAAAAAGCTG+AGG - chr3_1:20444918-20444937 Msa0352200:intron 45.0%
GAATTCGAATCCAGAACCTC+CGG + chr3_1:20445154-20445173 None:intergenic 45.0%
CGTATCCATGCTTCATTGAG+CGG + chr3_1:20445221-20445240 None:intergenic 45.0%
CGCTCAATGAAGCATGGATA+CGG - chr3_1:20445219-20445238 Msa0352200:intron 45.0%
! CCTCTCATTGTTGTTCTAGC+CGG - chr3_1:20445349-20445368 Msa0352200:intron 45.0%
TGCTGTTCTCATTCTCAGAG+TGG - chr3_1:20446015-20446034 Msa0352200:intron 45.0%
GATTTCTAATGCGGCCTGTA+AGG + chr3_1:20446285-20446304 None:intergenic 45.0%
! CTTTGGAGAAAAGAGTGTGG+CGG + chr3_1:20446629-20446648 None:intergenic 45.0%
! GCCACACTCTTTTCTCCAAA+GGG - chr3_1:20446628-20446647 Msa0352200:intron 45.0%
! CCACACTCTTTTCTCCAAAG+GGG - chr3_1:20446629-20446648 Msa0352200:intron 45.0%
! CTCTTTTCTCCAAAGGGGTT+TGG - chr3_1:20446634-20446653 Msa0352200:intron 45.0%
ATACCAAAGCCAAACCCCTT+TGG + chr3_1:20446646-20446665 None:intergenic 45.0%
ACGGTAAGAGAAAGAGGAAG+AGG + chr3_1:20446696-20446715 None:intergenic 45.0%
!! TGCTTATTTCTGTTAGGGGG+AGG - chr3_1:20446901-20446920 Msa0352200:intron 45.0%
!! GCTTATTTCTGTTAGGGGGA+GGG - chr3_1:20446902-20446921 Msa0352200:intron 45.0%
GTATTATGGTGCTCCTTTCG+AGG - chr3_1:20447150-20447169 Msa0352200:intron 45.0%
AAAGCAAGGTTCTCCTCGAA+AGG + chr3_1:20447166-20447185 None:intergenic 45.0%
TTTCGAGGAGAACCTTGCTT+TGG - chr3_1:20447165-20447184 Msa0352200:intron 45.0%
ATCTCTGTGCAGTGAAACAG+TGG - chr3_1:20447294-20447313 Msa0352200:intron 45.0%
! ACACTTCTGTTTTCTCTCCC+TGG - chr3_1:20447449-20447468 Msa0352200:intron 45.0%
!!! TCAATTTTTTTTGGGGGGGG+GGG - chr3_1:20447511-20447530 Msa0352200:intron 45.0%
! CTTGTTGTCGTTGGACTGAA+AGG - chr3_1:20447558-20447577 Msa0352200:intron 45.0%
GCTCACAATACACCAAATGG+TGG - chr3_1:20447634-20447653 Msa0352200:intron 45.0%
! AATGTAGTAGTGGTGGTGAC+TGG - chr3_1:20447737-20447756 Msa0352200:intron 45.0%
GGCAAACCTCCTGTTGTTAA+AGG + chr3_1:20448373-20448392 None:intergenic 45.0%
GTCTACAAATGCGGATTCCT+CGG + chr3_1:20448404-20448423 None:intergenic 45.0%
AGCAAATGCTCTTAGTGCCA+AGG - chr3_1:20448501-20448520 Msa0352200:CDS 45.0%
CTCTTAGTGCCAAGGTTTCA+CGG - chr3_1:20448509-20448528 Msa0352200:CDS 45.0%
TCTTAGTGCCAAGGTTTCAC+GGG - chr3_1:20448510-20448529 Msa0352200:CDS 45.0%
! GCCAAAACCGCTTGATTTTG+AGG + chr3_1:20448545-20448564 None:intergenic 45.0%
ACGACGTGTCGTAACGACAA+AGG + chr3_1:20444770-20444789 None:intergenic 50.0%
TTCTTCTGAACAAGCCACGG+TGG - chr3_1:20444810-20444829 Msa0352200:CDS 50.0%
TGGTTCCGTTCCAGCTTAAC+CGG - chr3_1:20445132-20445151 Msa0352200:intron 50.0%
AACCTCCGGTTAAGCTGGAA+CGG + chr3_1:20445140-20445159 None:intergenic 50.0%
GTTTGCCGCTCAATGAAGCA+TGG - chr3_1:20445213-20445232 Msa0352200:intron 50.0%
TGAAGCATGGATACGGACAC+CGG - chr3_1:20445226-20445245 Msa0352200:intron 50.0%
GTCAGTATCCATGTCGTGTC+CGG + chr3_1:20445248-20445267 None:intergenic 50.0%
CCGGCTAGAACAACAATGAG+AGG + chr3_1:20445352-20445371 None:intergenic 50.0%
! ACAGGAGTGCATTGTAGGTG+TGG - chr3_1:20446399-20446418 Msa0352200:intron 50.0%
! CGCCACACTCTTTTCTCCAA+AGG - chr3_1:20446627-20446646 Msa0352200:intron 50.0%
! CCCCTTTGGAGAAAAGAGTG+TGG + chr3_1:20446632-20446651 None:intergenic 50.0%
! TCTCCAAAGGGGTTTGGCTT+TGG - chr3_1:20446640-20446659 Msa0352200:intron 50.0%
AGATACGAACGTGGTGCGAA+TGG + chr3_1:20447278-20447297 None:intergenic 50.0%
ACTGCACAGAGATACGAACG+TGG + chr3_1:20447287-20447306 None:intergenic 50.0%
! CTGTTTTCTCTCCCTGGCAA+AGG - chr3_1:20447455-20447474 Msa0352200:intron 50.0%
!!! CAATTTTTTTTGGGGGGGGG+GGG - chr3_1:20447512-20447531 Msa0352200:intron 50.0%
!!! AATTTTTTTTGGGGGGGGGG+GGG - chr3_1:20447513-20447532 Msa0352200:intron 50.0%
TCGTTGGACTGAAAGGTCAC+CGG - chr3_1:20447565-20447584 Msa0352200:intron 50.0%
AATTCTGTTCAAGGGCAGCC+CGG + chr3_1:20447700-20447719 None:intergenic 50.0%
TGCTGCGTTTGCATCCTCAA+CGG + chr3_1:20448177-20448196 None:intergenic 50.0%
GCAGCAGCTGAGAAACTCAA+TGG - chr3_1:20448191-20448210 Msa0352200:intron 50.0%
CCTGGGACCTCAAAATCAAG+CGG - chr3_1:20448535-20448554 Msa0352200:CDS 50.0%
ACGACGTGTCGTAACGACAA+AGG + chr3_1:20444770-20444789 None:intergenic 50.0%
TTCTTCTGAACAAGCCACGG+TGG - chr3_1:20444810-20444829 Msa0352200:CDS 50.0%
TGGTTCCGTTCCAGCTTAAC+CGG - chr3_1:20445132-20445151 Msa0352200:intron 50.0%
AACCTCCGGTTAAGCTGGAA+CGG + chr3_1:20445140-20445159 None:intergenic 50.0%
GTTTGCCGCTCAATGAAGCA+TGG - chr3_1:20445213-20445232 Msa0352200:intron 50.0%
TGAAGCATGGATACGGACAC+CGG - chr3_1:20445226-20445245 Msa0352200:intron 50.0%
GTCAGTATCCATGTCGTGTC+CGG + chr3_1:20445248-20445267 None:intergenic 50.0%
CCGGCTAGAACAACAATGAG+AGG + chr3_1:20445352-20445371 None:intergenic 50.0%
! ACAGGAGTGCATTGTAGGTG+TGG - chr3_1:20446399-20446418 Msa0352200:intron 50.0%
! CGCCACACTCTTTTCTCCAA+AGG - chr3_1:20446627-20446646 Msa0352200:intron 50.0%
! CCCCTTTGGAGAAAAGAGTG+TGG + chr3_1:20446632-20446651 None:intergenic 50.0%
! TCTCCAAAGGGGTTTGGCTT+TGG - chr3_1:20446640-20446659 Msa0352200:intron 50.0%
AGATACGAACGTGGTGCGAA+TGG + chr3_1:20447278-20447297 None:intergenic 50.0%
ACTGCACAGAGATACGAACG+TGG + chr3_1:20447287-20447306 None:intergenic 50.0%
! CTGTTTTCTCTCCCTGGCAA+AGG - chr3_1:20447455-20447474 Msa0352200:intron 50.0%
!!! CAATTTTTTTTGGGGGGGGG+GGG - chr3_1:20447512-20447531 Msa0352200:intron 50.0%
!!! AATTTTTTTTGGGGGGGGGG+GGG - chr3_1:20447513-20447532 Msa0352200:intron 50.0%
TCGTTGGACTGAAAGGTCAC+CGG - chr3_1:20447565-20447584 Msa0352200:intron 50.0%
AATTCTGTTCAAGGGCAGCC+CGG + chr3_1:20447700-20447719 None:intergenic 50.0%
TGCTGCGTTTGCATCCTCAA+CGG + chr3_1:20448177-20448196 None:intergenic 50.0%
GCAGCAGCTGAGAAACTCAA+TGG - chr3_1:20448191-20448210 Msa0352200:intron 50.0%
CCTGGGACCTCAAAATCAAG+CGG - chr3_1:20448535-20448554 Msa0352200:CDS 50.0%
TGGAACGGAACCACCGCTAT+TGG + chr3_1:20445125-20445144 None:intergenic 55.0%
TTCCGTTCCAGCTTAACCGG+AGG - chr3_1:20445135-20445154 Msa0352200:intron 55.0%
TCCAGCTTAACCGGAGGTTC+TGG - chr3_1:20445141-20445160 Msa0352200:intron 55.0%
TCCAGAACCTCCGGTTAAGC+TGG + chr3_1:20445145-20445164 None:intergenic 55.0%
GGAGTGCATTGTAGGTGTGG+TGG - chr3_1:20446402-20446421 Msa0352200:intron 55.0%
CTGTGCAGTGAAACAGTGGC+TGG - chr3_1:20447298-20447317 Msa0352200:intron 55.0%
TAATGGTGCTCGTGCAGCAC+TGG - chr3_1:20447352-20447371 Msa0352200:intron 55.0%
AATGGTGCTCGTGCAGCACT+GGG - chr3_1:20447353-20447372 Msa0352200:intron 55.0%
!! TCGTGCAGCACTGGGTTTTG+CGG - chr3_1:20447361-20447380 Msa0352200:intron 55.0%
! GTTTTGCGGCAGGAACAGAG+TGG - chr3_1:20447375-20447394 Msa0352200:intron 55.0%
CCTATGCAGGGTATGGGAAG+GGG + chr3_1:20447662-20447681 None:intergenic 55.0%
GCCTATGCAGGGTATGGGAA+GGG + chr3_1:20447663-20447682 None:intergenic 55.0%
CTTCCCATACCCTGCATAGG+CGG - chr3_1:20447662-20447681 Msa0352200:intron 55.0%
TTCCCATACCCTGCATAGGC+GGG - chr3_1:20447663-20447682 Msa0352200:intron 55.0%
ACAAAGCTCCCGCCTATGCA+GGG + chr3_1:20447674-20447693 None:intergenic 55.0%
TACAAAGCTCCCGCCTATGC+AGG + chr3_1:20447675-20447694 None:intergenic 55.0%
! TAGGCGGGAGCTTTGTACAC+CGG - chr3_1:20447678-20447697 Msa0352200:intron 55.0%
AACAGGAGGTTTGCCAGTCC+AGG - chr3_1:20448378-20448397 Msa0352200:CDS 55.0%
CCAAGGTTTCACGGGTTCCT+GGG - chr3_1:20448518-20448537 Msa0352200:CDS 55.0%
!!! CCGCTTGATTTTGAGGTCCC+AGG + chr3_1:20448538-20448557 None:intergenic 55.0%
TGGAACGGAACCACCGCTAT+TGG + chr3_1:20445125-20445144 None:intergenic 55.0%
TTCCGTTCCAGCTTAACCGG+AGG - chr3_1:20445135-20445154 Msa0352200:intron 55.0%
TCCAGCTTAACCGGAGGTTC+TGG - chr3_1:20445141-20445160 Msa0352200:intron 55.0%
TCCAGAACCTCCGGTTAAGC+TGG + chr3_1:20445145-20445164 None:intergenic 55.0%
GGAGTGCATTGTAGGTGTGG+TGG - chr3_1:20446402-20446421 Msa0352200:intron 55.0%
CTGTGCAGTGAAACAGTGGC+TGG - chr3_1:20447298-20447317 Msa0352200:intron 55.0%
TAATGGTGCTCGTGCAGCAC+TGG - chr3_1:20447352-20447371 Msa0352200:intron 55.0%
AATGGTGCTCGTGCAGCACT+GGG - chr3_1:20447353-20447372 Msa0352200:intron 55.0%
!! TCGTGCAGCACTGGGTTTTG+CGG - chr3_1:20447361-20447380 Msa0352200:intron 55.0%
! GTTTTGCGGCAGGAACAGAG+TGG - chr3_1:20447375-20447394 Msa0352200:intron 55.0%
CCTATGCAGGGTATGGGAAG+GGG + chr3_1:20447662-20447681 None:intergenic 55.0%
GCCTATGCAGGGTATGGGAA+GGG + chr3_1:20447663-20447682 None:intergenic 55.0%
CTTCCCATACCCTGCATAGG+CGG - chr3_1:20447662-20447681 Msa0352200:intron 55.0%
TTCCCATACCCTGCATAGGC+GGG - chr3_1:20447663-20447682 Msa0352200:intron 55.0%
ACAAAGCTCCCGCCTATGCA+GGG + chr3_1:20447674-20447693 None:intergenic 55.0%
TACAAAGCTCCCGCCTATGC+AGG + chr3_1:20447675-20447694 None:intergenic 55.0%
! TAGGCGGGAGCTTTGTACAC+CGG - chr3_1:20447678-20447697 Msa0352200:intron 55.0%
AACAGGAGGTTTGCCAGTCC+AGG - chr3_1:20448378-20448397 Msa0352200:CDS 55.0%
CCAAGGTTTCACGGGTTCCT+GGG - chr3_1:20448518-20448537 Msa0352200:CDS 55.0%
!!! CCGCTTGATTTTGAGGTCCC+AGG + chr3_1:20448538-20448557 None:intergenic 55.0%
GACAGCAGGAGAATCCACCG+TGG + chr3_1:20444827-20444846 None:intergenic 60.0%
TACGGACACCGGACACGACA+TGG - chr3_1:20445237-20445256 Msa0352200:intron 60.0%
TGGGAAGGGGTCCCACCATT+TGG + chr3_1:20447649-20447668 None:intergenic 60.0%
CCCCTTCCCATACCCTGCAT+AGG - chr3_1:20447659-20447678 Msa0352200:intron 60.0%
CGCCTATGCAGGGTATGGGA+AGG + chr3_1:20447664-20447683 None:intergenic 60.0%
CTCCCGCCTATGCAGGGTAT+GGG + chr3_1:20447668-20447687 None:intergenic 60.0%
! AGGCGGGAGCTTTGTACACC+GGG - chr3_1:20447679-20447698 Msa0352200:intron 60.0%
! GTGGTGGTGACTGGTGAGTC+AGG - chr3_1:20447746-20447765 Msa0352200:intron 60.0%
CAAATGCGGATTCCTCGGCC+TGG + chr3_1:20448399-20448418 None:intergenic 60.0%
GCCAAGGTTTCACGGGTTCC+TGG - chr3_1:20448517-20448536 Msa0352200:CDS 60.0%
CCCAGGAACCCGTGAAACCT+TGG + chr3_1:20448521-20448540 None:intergenic 60.0%
GACAGCAGGAGAATCCACCG+TGG + chr3_1:20444827-20444846 None:intergenic 60.0%
TACGGACACCGGACACGACA+TGG - chr3_1:20445237-20445256 Msa0352200:intron 60.0%
TGGGAAGGGGTCCCACCATT+TGG + chr3_1:20447649-20447668 None:intergenic 60.0%
CCCCTTCCCATACCCTGCAT+AGG - chr3_1:20447659-20447678 Msa0352200:intron 60.0%
CGCCTATGCAGGGTATGGGA+AGG + chr3_1:20447664-20447683 None:intergenic 60.0%
CTCCCGCCTATGCAGGGTAT+GGG + chr3_1:20447668-20447687 None:intergenic 60.0%
! AGGCGGGAGCTTTGTACACC+GGG - chr3_1:20447679-20447698 Msa0352200:intron 60.0%
! GTGGTGGTGACTGGTGAGTC+AGG - chr3_1:20447746-20447765 Msa0352200:intron 60.0%
CAAATGCGGATTCCTCGGCC+TGG + chr3_1:20448399-20448418 None:intergenic 60.0%
GCCAAGGTTTCACGGGTTCC+TGG - chr3_1:20448517-20448536 Msa0352200:CDS 60.0%
CCCAGGAACCCGTGAAACCT+TGG + chr3_1:20448521-20448540 None:intergenic 60.0%
!! GCAGCACTGGGTTTTGCGGC+AGG - chr3_1:20447365-20447384 Msa0352200:intron 65.0%
!!! TTTTTTTGGGGGGGGGGGGG+TGG - chr3_1:20447516-20447535 Msa0352200:intron 65.0%
!!! TTTTTTGGGGGGGGGGGGGT+GGG - chr3_1:20447517-20447536 Msa0352200:intron 65.0%
GCTCCCGCCTATGCAGGGTA+TGG + chr3_1:20447669-20447688 None:intergenic 65.0%
AGGTTTGCCAGTCCAGGCCG+AGG - chr3_1:20448384-20448403 Msa0352200:CDS 65.0%
!! GCAGCACTGGGTTTTGCGGC+AGG - chr3_1:20447365-20447384 Msa0352200:intron 65.0%
!!! TTTTTTTGGGGGGGGGGGGG+TGG - chr3_1:20447516-20447535 Msa0352200:intron 65.0%
!!! TTTTTTGGGGGGGGGGGGGT+GGG - chr3_1:20447517-20447536 Msa0352200:intron 65.0%
GCTCCCGCCTATGCAGGGTA+TGG + chr3_1:20447669-20447688 None:intergenic 65.0%
AGGTTTGCCAGTCCAGGCCG+AGG - chr3_1:20448384-20448403 Msa0352200:CDS 65.0%
!! TTTTTGGGGGGGGGGGGGTG+GGG - chr3_1:20447518-20447537 Msa0352200:intron 70.0%
GCGGATTCCTCGGCCTGGAC+TGG + chr3_1:20448394-20448413 None:intergenic 70.0%
!! TTTTTGGGGGGGGGGGGGTG+GGG - chr3_1:20447518-20447537 Msa0352200:intron 70.0%
GCGGATTCCTCGGCCTGGAC+TGG + chr3_1:20448394-20448413 None:intergenic 70.0%
! GGGGGGGGGGGGGTGGGGAA+TGG - chr3_1:20447523-20447542 Msa0352200:intron 85.0%
! GGGGGGGGGGGGGTGGGGAA+TGG - chr3_1:20447523-20447542 Msa0352200:intron 85.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 20444560 20448675 20444560 ID=Msa0352200;Name=Msa0352200
chr3_1 mRNA 20444560 20448675 20444560 ID=Msa0352200-mRNA-1;Parent=Msa0352200;Name=Msa0352200-mRNA-1;_AED=0.20;_eAED=0.20;_QI=113|1|0.66|1|0.5|1|3|0|238
chr3_1 exon 20444560 20444907 20444560 ID=Msa0352200-mRNA-1:exon:4720;Parent=Msa0352200-mRNA-1
chr3_1 exon 20445018 20445119 20445018 ID=Msa0352200-mRNA-1:exon:4719;Parent=Msa0352200-mRNA-1
chr3_1 exon 20448296 20448675 20448296 ID=Msa0352200-mRNA-1:exon:4718;Parent=Msa0352200-mRNA-1
chr3_1 five_prime_UTR 20448563 20448675 20448563 ID=Msa0352200-mRNA-1:five_prime_utr;Parent=Msa0352200-mRNA-1
chr3_1 CDS 20448296 20448562 20448296 ID=Msa0352200-mRNA-1:cds;Parent=Msa0352200-mRNA-1
chr3_1 CDS 20445018 20445119 20445018 ID=Msa0352200-mRNA-1:cds;Parent=Msa0352200-mRNA-1
chr3_1 CDS 20444560 20444907 20444560 ID=Msa0352200-mRNA-1:cds;Parent=Msa0352200-mRNA-1
Gene Sequence

>Msa0352200

ATGGCTTCTTTACTCTCACAACTCAATTTCCTTTCTCTAACTCACAACACTTCCACAAACTTTACCCTAAAACCCAAAACGACAACACCTTCTTCCTTTGTCGTTACGACACGTCGTTTTAGAAAACACTTTGTTGTTTCTTCTGAACAAGCCACGGTGGATTCTCCTGCTGTCAGAAAACTCTATGTTGGTAACATTCCTCGTACTGTTAGTAATGATGAACTTGCCAAGATTGTTCAAGAACATGGTGCTGTTGAAAAAGCTGAGGTTATGTATGATAAATACTCTAAAAGGAGCCGTCGCTTTGCATTTGTTACAATGAAAACCGTTGAGGATGCAAACGCAGCAGCTGAGAAACTCAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTGAATATAACCGAAAAACCTTTAACAACAGGAGGTTTGCCAGTCCAGGCCGAGGAATCCGCATTTGTAGACAGTCCTTACAAGGTATATGTGGGAAATCTGGCTAAGAATGTAACCTCTGATAGCCTTAAAAATTTCTTCTCGGAAAAAGCAAATGCTCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACCTCAAAATCAAGCGGTTTTGGCTTTGTTACTTTTTCATCAGATGAGGATGTAGAAGCTGCTATCTCATCTTTCAACAATGCTGTAAGTTTTTCACTGCCCTTCCTGTTTATTTTGCATGCTGAAACTTCCTGA

Protein sequence

>Msa0352200

MASLLSQLNFLSLTHNTSTNFTLKPKTTTPSSFVVTTRRFRKHFVVSSEQATVDSPAVRKLYVGNIPRTVSNDELAKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKLNGTQIGGREIKVNITEKPLTTGGLPVQAEESAFVDSPYKVYVGNLAKNVTSDSLKNFFSEKANALSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNAVSFSLPFLFILHAETS*