AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170680 MtrunA17_Chr1g0188261 83.073 384 10 3 6 342 4 379 0.0 631
Msa0170680 MtrunA17_Chr1g0210231 63.218 261 95 1 67 326 141 401 3.59e-108 330
Msa0170680 MtrunA17_Chr8g0360481 59.542 262 105 1 63 323 119 380 6.54e-107 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170680 AT1G33290.3 79.496 278 57 0 62 339 24 301 9.39e-167 467
Msa0170680 AT1G33290.1 79.496 278 57 0 62 339 98 375 1.69e-165 467
Msa0170680 AT3G10420.1 61.450 262 100 1 63 323 148 409 2.61e-107 324
Msa0170680 AT3G10420.2 61.450 262 100 1 63 323 148 409 2.17e-106 326
Msa0170680 AT1G73170.1 55.124 283 125 2 63 343 132 414 5.04e-103 317
Msa0170680 AT1G73170.3 55.124 283 125 2 63 343 132 414 7.87e-103 317
Msa0170680 AT1G73170.2 55.720 271 118 2 75 343 16 286 7.66e-101 308
Msa0170680 AT1G33290.2 80.992 121 23 0 62 182 98 218 3.21e-64 206
Msa0170680 AT1G33290.2 76.190 84 20 0 256 339 216 299 1.79e-38 139
Msa0170680 AT1G73170.4 47.143 140 72 2 206 343 1 140 8.51e-33 126

Find 95 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGGAGCAGTTGGAGATTT+TGG 0.126961 1_4:+54987444 Msa0170680:CDS
GAGCGAGGCATCATGCTTAT+AGG 0.265973 1_4:+54988684 Msa0170680:CDS
CGACCTCCATGCTCTCTTAC+AGG 0.299334 1_4:+54986735 Msa0170680:CDS
ATCACCTCCAATTTCATTAC+TGG 0.299857 1_4:-54988493 None:intergenic
GTTGATACCAGTAATGAAAT+TGG 0.304856 1_4:+54988486 Msa0170680:CDS
TGGGTTTATAAATTATATTA+TGG 0.317072 1_4:-54991090 None:intergenic
GTTTATGATCTGCTTCAATA+TGG 0.323340 1_4:+54987591 Msa0170680:CDS
CCTCAATCAAGAAAAGTTAA+TGG 0.335708 1_4:-54991351 None:intergenic
ATCACGCTATGTTGCATTGA+TGG 0.341246 1_4:-54988570 None:intergenic
AGTAGGAATGGTGGCATTGT+TGG 0.363900 1_4:+54987522 Msa0170680:CDS
AACACAATTTACAAAATGAA+TGG 0.363945 1_4:-54991110 None:intergenic
GATCATAAACCATGTCAATA+TGG 0.372234 1_4:-54987578 None:intergenic
AGCGAGGCATCATGCTTATA+GGG 0.403823 1_4:+54988685 Msa0170680:CDS
TGCACAGAATATCAGCAATA+AGG 0.410002 1_4:+54987499 Msa0170680:CDS
GACAAACCTAGGTGTTAGTA+TGG 0.422069 1_4:-54991232 None:intergenic
CGGCATAGCATTTGAATTTG+AGG 0.430174 1_4:-54986660 None:intergenic
GGCATGTTGGTCATGTTTGA+TGG 0.431863 1_4:+54986591 Msa0170680:CDS
ACACAATTTACAAAATGAAT+GGG 0.435255 1_4:-54991109 None:intergenic
TTGGTTTGACGTGTCGGATT+GGG 0.436479 1_4:+54987541 Msa0170680:CDS
CATTTGCTTTATTAGATTGG+TGG 0.439996 1_4:+54989267 Msa0170680:intron
AAAAGCGGAACTGGGGATAA+GGG 0.443144 1_4:+54986534 Msa0170680:five_prime_UTR
AATATTCCTCATGCAGCAAT+AGG 0.447097 1_4:+54988519 Msa0170680:CDS
ATACTAACACCTAGGTTTGT+CGG 0.449041 1_4:+54991234 Msa0170680:three_prime_UTR
TATAAATTATATTATGGAAA+GGG 0.452150 1_4:-54991084 None:intergenic
GATAATAGAGCTGGTATTGA+AGG 0.452494 1_4:+54987471 Msa0170680:CDS
GGCATAGCATTTGAATTTGA+GGG 0.454237 1_4:-54986659 None:intergenic
TGTGACTGTGACTGTGGCTG+TGG 0.468210 1_4:-54986691 None:intergenic
AGGCAAGACCCCACAGGTTG+AGG 0.471366 1_4:+54990141 Msa0170680:CDS
CGGATTGGGAGGGCTGTCAC+TGG 0.472439 1_4:+54987555 Msa0170680:CDS
ACACTACTGGGTTACACATC+AGG 0.473781 1_4:+54989404 Msa0170680:CDS
GATTCTTCCAGGCCTGGGGT+TGG 0.476303 1_4:+54988300 Msa0170680:intron
TACTAACACCTAGGTTTGTC+GGG 0.487669 1_4:+54991235 Msa0170680:three_prime_UTR
GTTGGTTTGACGTGTCGGAT+TGG 0.489931 1_4:+54987540 Msa0170680:CDS
AGCGGAACTGGGGATAAGGG+TGG 0.495086 1_4:+54986537 Msa0170680:five_prime_UTR
AGATGAGAGATAGACACTAC+TGG 0.502286 1_4:+54989391 Msa0170680:CDS
CAACAGCAACAACAGCAGCA+TGG 0.506660 1_4:+54986617 Msa0170680:CDS
AGTAATGAAATTGGAGGTGA+TGG 0.508241 1_4:+54988495 Msa0170680:CDS
GCATTGTTGGTTTGACGTGT+CGG 0.509058 1_4:+54987535 Msa0170680:CDS
GTTTGACGTGTCGGATTGGG+AGG 0.510749 1_4:+54987544 Msa0170680:CDS
CCTAGGTGTTAGTATGGTAA+TGG 0.511636 1_4:-54991226 None:intergenic
GGAACTGGGGATAAGGGTGG+GGG 0.515977 1_4:+54986540 Msa0170680:five_prime_UTR
TGGAATTGAAAGTGTTACTC+TGG 0.516865 1_4:+54989287 Msa0170680:CDS
CGGAACTGGGGATAAGGGTG+GGG 0.517086 1_4:+54986539 Msa0170680:five_prime_UTR
GTGATTATAGTAGATGAGAT+TGG 0.517092 1_4:+54988624 Msa0170680:CDS
GTAGTACCTGTAAGAGAGCA+TGG 0.518332 1_4:-54986741 None:intergenic
TCATCTACTATAATCACCTC+AGG 0.528346 1_4:-54988618 None:intergenic
GAATATGCTGAAGGAGCAGT+TGG 0.530400 1_4:+54987435 Msa0170680:CDS
TTATAAATTATATTATGGAA+AGG 0.537273 1_4:-54991085 None:intergenic
ACAGTAGTCTTGCCAACCCC+AGG 0.537874 1_4:-54988312 None:intergenic
GCTATGTTGCATTGATGGCT+CGG 0.540454 1_4:-54988565 None:intergenic
TCAATCAAGAAATCAAATGT+TGG 0.540516 1_4:-54989369 None:intergenic
CTAGGTAACAGTGAGAGAGT+TGG 0.544848 1_4:+54987413 Msa0170680:intron
TTTGGGAAGGATAATAGAGC+TGG 0.546805 1_4:+54987462 Msa0170680:CDS
AAATTATATTATGGAAAGGG+AGG 0.547372 1_4:-54991081 None:intergenic
ATGCTTATAGGGACTGCTCA+TGG 0.547544 1_4:+54988696 Msa0170680:CDS
TTGTTTGTCCCGACAAACCT+AGG 0.552415 1_4:-54991243 None:intergenic
AGGTGGTGCACGTAGAATGC+AGG 0.554707 1_4:+54988539 Msa0170680:CDS
TTTGGATTCTTCCAGGCCTG+GGG 0.555222 1_4:+54988296 Msa0170680:intron
GCAACATAGCGTGATGATTG+AGG 0.555819 1_4:+54988578 Msa0170680:CDS
TGCCTCGCTCAGCAATCGAC+CGG 0.568637 1_4:-54988671 None:intergenic
AGCGTAGATATATTGCTTCG+AGG 0.569413 1_4:+54990121 Msa0170680:CDS
TAATCCTACGCTCTCTGACC+TGG 0.571096 1_4:+54988743 Msa0170680:CDS
GCGGAACTGGGGATAAGGGT+GGG 0.574118 1_4:+54986538 Msa0170680:five_prime_UTR
GAATATCAGCAATAAGGAGT+AGG 0.577619 1_4:+54987505 Msa0170680:CDS
TGCCGGTCGATTGCTGAGCG+AGG 0.579543 1_4:+54988669 Msa0170680:CDS
GCTTCGAGGCAAGACCCCAC+AGG 0.579998 1_4:+54990135 Msa0170680:CDS
CATTTGAATTTGAGGGTCGG+TGG 0.585953 1_4:-54986652 None:intergenic
AAGCTGAAGCTCATGCATGC+CGG 0.588992 1_4:+54988652 Msa0170680:CDS
TGTCACTGGCCATATTGACA+TGG 0.589779 1_4:+54987569 Msa0170680:CDS
TTTGACGTGTCGGATTGGGA+GGG 0.591021 1_4:+54987545 Msa0170680:CDS
ATCAAGAAATCAAATGTTGG+AGG 0.591943 1_4:-54989366 None:intergenic
TCAGCAATAAGGAGTAGGAA+TGG 0.597931 1_4:+54987510 Msa0170680:CDS
GAAGAATTACCTCAACCTGT+GGG 0.599084 1_4:-54990150 None:intergenic
TAGCATTTGAATTTGAGGGT+CGG 0.608467 1_4:-54986655 None:intergenic
AGAGAGTTGGAATATGCTGA+AGG 0.615898 1_4:+54987426 Msa0170680:CDS
CCATTACCATACTAACACCT+AGG 0.616662 1_4:+54991226 Msa0170680:three_prime_UTR
GTCAGAAGACTATTCTTGAG+AGG 0.618967 1_4:+54989337 Msa0170680:CDS
CTGCAAATGCAATGGCATGT+TGG 0.621228 1_4:+54986578 Msa0170680:CDS
GAACACTGTGACTGTGACTG+TGG 0.625091 1_4:-54986697 None:intergenic
GATGAGAGATAGACACTACT+GGG 0.625526 1_4:+54989392 Msa0170680:CDS
ATTCCTCATGCAGCAATAGG+TGG 0.626244 1_4:+54988522 Msa0170680:CDS
AATGATAGCTGCAAATGCAA+TGG 0.628631 1_4:+54986570 Msa0170680:exon
CTGTGGCTGTGGCTGAGTCG+CGG 0.631504 1_4:-54986680 None:intergenic
AGATGAATTTCACAAAAGAG+TGG 0.647161 1_4:+54988362 Msa0170680:CDS
TGAAGAATTACCTCAACCTG+TGG 0.649387 1_4:-54990151 None:intergenic
GAGAGATAATGCACACAGAG+AGG 0.653987 1_4:-54991310 None:intergenic
GCACCACCTATTGCTGCATG+AGG 0.660141 1_4:-54988525 None:intergenic
GGAATTGAAAGTGTTACTCT+GGG 0.661020 1_4:+54989288 Msa0170680:CDS
GCAATAAGGAGTAGGAATGG+TGG 0.666850 1_4:+54987513 Msa0170680:CDS
GATACCAGTAATGAAATTGG+AGG 0.667560 1_4:+54988489 Msa0170680:CDS
CAAACCAGGTCAGAGAGCGT+AGG 0.670521 1_4:-54988747 None:intergenic
AAGAATTACCTCAACCTGTG+GGG 0.683693 1_4:-54990149 None:intergenic
TTAATGGTCTCAGAATCAGA+AGG 0.692795 1_4:-54991335 None:intergenic
AGTAGAAAATCATATGCCTG+AGG 0.712015 1_4:+54988602 Msa0170680:CDS
GTACCTGTAAGAGAGCATGG+AGG 0.821434 1_4:-54986738 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAATCATAAATTATTAAA+AGG + chr1_4:54988212-54988231 Msa0170680:intron 10.0%
!! TATAAATTATATTATGGAAA+GGG - chr1_4:54991087-54991106 None:intergenic 10.0%
!! TTATAAATTATATTATGGAA+AGG - chr1_4:54991088-54991107 None:intergenic 10.0%
!!! TGTTTTAAATTGTTTATATA+TGG - chr1_4:54991183-54991202 None:intergenic 10.0%
!! TAAAACTAAATAAGAAAAGT+GGG - chr1_4:54987311-54987330 None:intergenic 15.0%
!!! CAATTTTATCATCTTATATT+TGG + chr1_4:54987767-54987786 Msa0170680:intron 15.0%
!!! TTATGATTCTATTTTGTTAT+TGG - chr1_4:54988203-54988222 None:intergenic 15.0%
!!! ATATCAATTTTTTAAAAAGG+GGG - chr1_4:54988817-54988836 None:intergenic 15.0%
!!! GATATCAATTTTTTAAAAAG+GGG - chr1_4:54988818-54988837 None:intergenic 15.0%
!!! GGATATCAATTTTTTAAAAA+GGG - chr1_4:54988819-54988838 None:intergenic 15.0%
!!! TTGAATTTTATTATTGTAAC+AGG + chr1_4:54989643-54989662 Msa0170680:intron 15.0%
!!! GTAATACTTTTCATTTATTT+TGG + chr1_4:54990268-54990287 Msa0170680:intron 15.0%
!!! GTTATAATTTTAACTTTCTA+GGG - chr1_4:54990887-54990906 None:intergenic 15.0%
!!! TGTTATAATTTTAACTTTCT+AGG - chr1_4:54990888-54990907 None:intergenic 15.0%
!! TGGGTTTATAAATTATATTA+TGG - chr1_4:54991093-54991112 None:intergenic 15.0%
!! AAAAAAGAAAGTTGTAAGAA+AGG - chr1_4:54986791-54986810 None:intergenic 20.0%
!! ACAAAGAGAGATAAATAATA+GGG - chr1_4:54986896-54986915 None:intergenic 20.0%
!! AACAAAGAGAGATAAATAAT+AGG - chr1_4:54986897-54986916 None:intergenic 20.0%
!! ATTAGTATAGTATACTATGT+CGG - chr1_4:54987037-54987056 None:intergenic 20.0%
!! TCTAACTCATTATTACAAAA+CGG - chr1_4:54987224-54987243 None:intergenic 20.0%
!! CTAAAACTAAATAAGAAAAG+TGG - chr1_4:54987312-54987331 None:intergenic 20.0%
!!! TAAACTAAGCTTTAGAAATT+AGG - chr1_4:54987668-54987687 None:intergenic 20.0%
!! GCTGTTAATTGTAATATATT+TGG + chr1_4:54987848-54987867 Msa0170680:intron 20.0%
!!! ATTAAATCTGTTTTATCTTG+TGG - chr1_4:54987956-54987975 None:intergenic 20.0%
!! TACCATTTATAATAGATCAT+GGG - chr1_4:54988147-54988166 None:intergenic 20.0%
!! TTACCATTTATAATAGATCA+TGG - chr1_4:54988148-54988167 None:intergenic 20.0%
!! TTCTTGCATATCTTATAATT+TGG + chr1_4:54988278-54988297 Msa0170680:intron 20.0%
!! TAGAATGAATTCTTTCAAAT+TGG + chr1_4:54988453-54988472 Msa0170680:intron 20.0%
!! AGAATGAATTCTTTCAAATT+GGG + chr1_4:54988454-54988473 Msa0170680:intron 20.0%
!! GGAAAAATCTTATAGATTAT+TGG - chr1_4:54988795-54988814 None:intergenic 20.0%
!!! TATCAATTTTTTAAAAAGGG+GGG - chr1_4:54988816-54988835 None:intergenic 20.0%
!!! GGGATATCAATTTTTTAAAA+AGG - chr1_4:54988820-54988839 None:intergenic 20.0%
!! AAACCATAATAAATTCGTAA+AGG - chr1_4:54989007-54989026 None:intergenic 20.0%
!!! GGTAACTATATCTTATTTTA+TGG + chr1_4:54989076-54989095 Msa0170680:intron 20.0%
!! ATGTATGTCAAATATGAAAA+TGG - chr1_4:54989572-54989591 None:intergenic 20.0%
!! TTTCATATTTGACATACATT+TGG + chr1_4:54989573-54989592 Msa0170680:intron 20.0%
!! ACAATGTTATTAACAGAAAA+CGG - chr1_4:54989779-54989798 None:intergenic 20.0%
!! AAACATTAGTACAATTATCA+GGG - chr1_4:54989807-54989826 None:intergenic 20.0%
!! TAAACATTAGTACAATTATC+AGG - chr1_4:54989808-54989827 None:intergenic 20.0%
!! AATCAAATAGTCATTTCATT+TGG - chr1_4:54990334-54990353 None:intergenic 20.0%
!!! TGAAATGACTATTTGATTTT+TGG + chr1_4:54990336-54990355 Msa0170680:intron 20.0%
!! AGCATAAATCTTCATATAAT+AGG - chr1_4:54990731-54990750 None:intergenic 20.0%
!!! TATTATTTCTCTTTTACGTT+TGG + chr1_4:54990792-54990811 Msa0170680:intron 20.0%
!! GAATTGATCATTAATACATT+GGG - chr1_4:54990917-54990936 None:intergenic 20.0%
!! TGAATTGATCATTAATACAT+TGG - chr1_4:54990918-54990937 None:intergenic 20.0%
!! ATGTATTAATGATCAATTCA+AGG + chr1_4:54990918-54990937 Msa0170680:intron 20.0%
!! ACACAATTTACAAAATGAAT+GGG - chr1_4:54991112-54991131 None:intergenic 20.0%
!! AACACAATTTACAAAATGAA+TGG - chr1_4:54991113-54991132 None:intergenic 20.0%
!!! GTGTTTTTTAAGACATTAAG+AGG + chr1_4:54986484-54986503 Msa0170680:five_prime_UTR 25.0%
! ATAATAAAGAAGTGATGCAT+TGG - chr1_4:54987267-54987286 None:intergenic 25.0%
! AAAAAGAATGTTCTGTTCAA+AGG + chr1_4:54987351-54987370 Msa0170680:intron 25.0%
!! ATAATACTTCAAGTTCTAAC+CGG + chr1_4:54987687-54987706 Msa0170680:intron 25.0%
! TTATATTTGGTCTAAACATC+AGG + chr1_4:54987780-54987799 Msa0170680:intron 25.0%
! TGTAATATATTTGGTCTGTT+TGG + chr1_4:54987857-54987876 Msa0170680:intron 25.0%
!!! AAGCTGTTTTAACAAATTCT+CGG + chr1_4:54988064-54988083 Msa0170680:intron 25.0%
!!! TGATCTATAACACTACTTTT+AGG - chr1_4:54988425-54988444 None:intergenic 25.0%
! TATGATAATCAAAACAAACC+AGG - chr1_4:54988764-54988783 None:intergenic 25.0%
! TCAACTGTGTTTAAAAGAAA+AGG + chr1_4:54988898-54988917 Msa0170680:intron 25.0%
!!! AATAAGCAACATATTGACTT+TGG - chr1_4:54988946-54988965 None:intergenic 25.0%
!! TCAATATGTTGCTTATTTCA+GGG + chr1_4:54988949-54988968 Msa0170680:intron 25.0%
! AATTTAATAACTCTAGTCAG+AGG + chr1_4:54989048-54989067 Msa0170680:intron 25.0%
!! AATGAGTGAAACAAATTTTC+AGG - chr1_4:54989136-54989155 None:intergenic 25.0%
! AATCTAATAAAGCAAATGGA+GGG - chr1_4:54989265-54989284 None:intergenic 25.0%
! TCAATCAAGAAATCAAATGT+TGG - chr1_4:54989372-54989391 None:intergenic 25.0%
!! ACATATTTACATCCTTTTAC+TGG - chr1_4:54989871-54989890 None:intergenic 25.0%
! AAAGGATGTAAATATGTCAT+TGG + chr1_4:54989874-54989893 Msa0170680:intron 25.0%
!!! GATTAGTTTTGTTGATTGTT+TGG + chr1_4:54989943-54989962 Msa0170680:intron 25.0%
! TTATAAGCCAAAATATGAGT+TGG + chr1_4:54990048-54990067 Msa0170680:intron 25.0%
!! CATAAAACCAACTCATATTT+TGG - chr1_4:54990058-54990077 None:intergenic 25.0%
! GCATATCATTCTTGAAAATA+AGG - chr1_4:54990213-54990232 None:intergenic 25.0%
!!! CTTTTCATTTATTTTGGTTG+TGG + chr1_4:54990274-54990293 Msa0170680:intron 25.0%
!! GGTATAAACTTATACTTTTG+TGG - chr1_4:54990426-54990445 None:intergenic 25.0%
! TTTACAGTCATTGCAAATTT+GGG - chr1_4:54990561-54990580 None:intergenic 25.0%
!! TTTTACAGTCATTGCAAATT+TGG - chr1_4:54990562-54990581 None:intergenic 25.0%
!! AAACTTATTCCCTGATTTTA+CGG + chr1_4:54990610-54990629 Msa0170680:intron 25.0%
!! TTTTCTGGGTATATTATGAT+AGG - chr1_4:54990860-54990879 None:intergenic 25.0%
! AAATTATATTATGGAAAGGG+AGG - chr1_4:54991084-54991103 None:intergenic 25.0%
GAAAGTTGTAAGAAAGGAAA+TGG - chr1_4:54986785-54986804 None:intergenic 30.0%
TATAACCTGATGAAGAATGA+AGG - chr1_4:54987073-54987092 None:intergenic 30.0%
CATTCTTCATCAGGTTATAT+TGG + chr1_4:54987074-54987093 Msa0170680:intron 30.0%
TCATCAGGTTATATTGGATT+TGG + chr1_4:54987080-54987099 Msa0170680:intron 30.0%
CATCAGGTTATATTGGATTT+GGG + chr1_4:54987081-54987100 Msa0170680:intron 30.0%
CCTCAGAATTTCTTAGATAA+TGG - chr1_4:54987146-54987165 None:intergenic 30.0%
CCATTATCTAAGAAATTCTG+AGG + chr1_4:54987143-54987162 Msa0170680:intron 30.0%
!! AGAAATTCTGAGGTAAAAGT+AGG + chr1_4:54987153-54987172 Msa0170680:intron 30.0%
!!! AAACGGACTTTTTTAAGATG+TGG - chr1_4:54987207-54987226 None:intergenic 30.0%
GATCATAAACCATGTCAATA+TGG - chr1_4:54987581-54987600 None:intergenic 30.0%
GTTTATGATCTGCTTCAATA+TGG + chr1_4:54987591-54987610 Msa0170680:CDS 30.0%
!! AGAGCATTTTATTTCTTGGA+AGG + chr1_4:54987616-54987635 Msa0170680:CDS 30.0%
ATATAGATGTGCATCATTCA+TGG + chr1_4:54987642-54987661 Msa0170680:intron 30.0%
TTTAGTGTGTGTTAAAGACT+TGG + chr1_4:54987808-54987827 Msa0170680:intron 30.0%
AGCCCATGATCTATTATAAA+TGG + chr1_4:54988142-54988161 Msa0170680:intron 30.0%
CTTATAATTTGGATTCTTCC+AGG + chr1_4:54988289-54988308 Msa0170680:intron 30.0%
AGATGAATTTCACAAAAGAG+TGG + chr1_4:54988362-54988381 Msa0170680:CDS 30.0%
TGAATTCTTTCAAATTGGGT+AGG + chr1_4:54988458-54988477 Msa0170680:intron 30.0%
GTTGATACCAGTAATGAAAT+TGG + chr1_4:54988486-54988505 Msa0170680:CDS 30.0%
GTGATTATAGTAGATGAGAT+TGG + chr1_4:54988624-54988643 Msa0170680:CDS 30.0%
TAAATGACTCAATGAAGCTA+GGG - chr1_4:54988840-54988859 None:intergenic 30.0%
ATAAATGACTCAATGAAGCT+AGG - chr1_4:54988841-54988860 None:intergenic 30.0%
!!! GTAGTTGTATCGATTTTATG+TGG + chr1_4:54988920-54988939 Msa0170680:intron 30.0%
! GTCAATATGTTGCTTATTTC+AGG + chr1_4:54988948-54988967 Msa0170680:intron 30.0%
AGGCCTTTACGAATTTATTA+TGG + chr1_4:54989001-54989020 Msa0170680:intron 30.0%
ATCTAATAAAGCAAATGGAG+GGG - chr1_4:54989264-54989283 None:intergenic 30.0%
CAATCTAATAAAGCAAATGG+AGG - chr1_4:54989266-54989285 None:intergenic 30.0%
! CTCCATTTGCTTTATTAGAT+TGG + chr1_4:54989264-54989283 Msa0170680:intron 30.0%
CACCAATCTAATAAAGCAAA+TGG - chr1_4:54989269-54989288 None:intergenic 30.0%
! CATTTGCTTTATTAGATTGG+TGG + chr1_4:54989267-54989286 Msa0170680:intron 30.0%
ATCAAGAAATCAAATGTTGG+AGG - chr1_4:54989369-54989388 None:intergenic 30.0%
! ATTTGACATACATTTGGTGA+AGG + chr1_4:54989579-54989598 Msa0170680:intron 30.0%
! TTTGACATACATTTGGTGAA+GGG + chr1_4:54989580-54989599 Msa0170680:intron 30.0%
! CCATATAACAATATGATGGA+TGG - chr1_4:54989732-54989751 None:intergenic 30.0%
CCATCCATCATATTGTTATA+TGG + chr1_4:54989729-54989748 Msa0170680:intron 30.0%
TCAGCCATATAACAATATGA+TGG - chr1_4:54989736-54989755 None:intergenic 30.0%
TGTTATTAACAGAAAACGGT+GGG - chr1_4:54989775-54989794 None:intergenic 30.0%
ATGTTATTAACAGAAAACGG+TGG - chr1_4:54989776-54989795 None:intergenic 30.0%
ATATAGATGACAAACCATTG+TGG - chr1_4:54989844-54989863 None:intergenic 30.0%
! CAATGGTTTGTCATCTATAT+CGG + chr1_4:54989844-54989863 Msa0170680:intron 30.0%
! AATGGTTTGTCATCTATATC+GGG + chr1_4:54989845-54989864 Msa0170680:intron 30.0%
! AATCGTCTAAAATATGATGC+AGG - chr1_4:54989927-54989946 None:intergenic 30.0%
CGCTTAAAAATTTAGTCTAG+TGG + chr1_4:54989972-54989991 Msa0170680:intron 30.0%
! TTAGTCTAGTGGAATTGTTT+TGG + chr1_4:54989983-54990002 Msa0170680:intron 30.0%
! CAATATATCTACGCTTTTGT+CGG - chr1_4:54990116-54990135 None:intergenic 30.0%
!!! GACTATTTGATTTTTGGTTG+AGG + chr1_4:54990342-54990361 Msa0170680:intron 30.0%
GTATAAGTTTATACCTAGCA+TGG + chr1_4:54990431-54990450 Msa0170680:intron 30.0%
TAATGTAATCCTAGTTTGGA+CGG - chr1_4:54990499-54990518 None:intergenic 30.0%
ACACTAATGTAATCCTAGTT+TGG - chr1_4:54990503-54990522 None:intergenic 30.0%
! AAATCAGGGAATAAGTTTTG+TGG - chr1_4:54990608-54990627 None:intergenic 30.0%
ATGTAACTTCCGTAAAATCA+GGG - chr1_4:54990622-54990641 None:intergenic 30.0%
TATGTAACTTCCGTAAAATC+AGG - chr1_4:54990623-54990642 None:intergenic 30.0%
TGCTTTCATTAACTTCACAT+TGG + chr1_4:54990682-54990701 Msa0170680:intron 30.0%
GCTTTCATTAACTTCACATT+GGG + chr1_4:54990683-54990702 Msa0170680:intron 30.0%
TATGAAGATTTATGCTCCAA+AGG + chr1_4:54990735-54990754 Msa0170680:intron 30.0%
! TTTGGTTCATAAATATGCTC+TGG + chr1_4:54990810-54990829 Msa0170680:intron 30.0%
ATAAATATGCTCTGGTCATA+TGG + chr1_4:54990818-54990837 Msa0170680:intron 30.0%
TCATAATATACCCAGAAAAG+AGG + chr1_4:54990861-54990880 Msa0170680:intron 30.0%
!!! ATGTCTCATAACTTTTTTGC+AGG + chr1_4:54990983-54991002 Msa0170680:intron 30.0%
AAAAAGAGATGAGAAATGCA+AGG + chr1_4:54991010-54991029 Msa0170680:CDS 30.0%
CCTCAATCAAGAAAAGTTAA+TGG - chr1_4:54991354-54991373 None:intergenic 30.0%
! CCATTAACTTTTCTTGATTG+AGG + chr1_4:54991351-54991370 Msa0170680:three_prime_UTR 30.0%
ACTATTACCCGTGAAAAAAG+CGG + chr1_4:54986519-54986538 Msa0170680:five_prime_UTR 35.0%
AATGATAGCTGCAAATGCAA+TGG + chr1_4:54986570-54986589 Msa0170680:exon 35.0%
TAGCATTTGAATTTGAGGGT+CGG - chr1_4:54986658-54986677 None:intergenic 35.0%
GGCATAGCATTTGAATTTGA+GGG - chr1_4:54986662-54986681 None:intergenic 35.0%
AGAAAGGAAATGGTTGAGAA+TGG - chr1_4:54986775-54986794 None:intergenic 35.0%
AGATTGTGATGCAAATCTGA+AGG - chr1_4:54986833-54986852 None:intergenic 35.0%
! CATTCAATGATGTGTTGTTG+CGG - chr1_4:54986995-54987014 None:intergenic 35.0%
TTGAACCTTCATTCTTCATC+AGG + chr1_4:54987065-54987084 Msa0170680:intron 35.0%
TTGTGATATGATCTCATGTG+TGG + chr1_4:54987378-54987397 Msa0170680:intron 35.0%
! GATAATAGAGCTGGTATTGA+AGG + chr1_4:54987471-54987490 Msa0170680:CDS 35.0%
TGCACAGAATATCAGCAATA+AGG + chr1_4:54987499-54987518 Msa0170680:CDS 35.0%
GAATATCAGCAATAAGGAGT+AGG + chr1_4:54987505-54987524 Msa0170680:CDS 35.0%
!!! GGCAAGAGCATTTTATTTCT+TGG + chr1_4:54987612-54987631 Msa0170680:CDS 35.0%
! CCGATTTCATTTCAAGTATC+CGG - chr1_4:54987709-54987728 None:intergenic 35.0%
CCGGATACTTGAAATGAAAT+CGG + chr1_4:54987706-54987725 Msa0170680:intron 35.0%
GATACCAGTAATGAAATTGG+AGG + chr1_4:54988489-54988508 Msa0170680:CDS 35.0%
ATCACCTCCAATTTCATTAC+TGG - chr1_4:54988496-54988515 None:intergenic 35.0%
AGTAATGAAATTGGAGGTGA+TGG + chr1_4:54988495-54988514 Msa0170680:CDS 35.0%
AATATTCCTCATGCAGCAAT+AGG + chr1_4:54988519-54988538 Msa0170680:CDS 35.0%
AGTAGAAAATCATATGCCTG+AGG + chr1_4:54988602-54988621 Msa0170680:CDS 35.0%
TCATCTACTATAATCACCTC+AGG - chr1_4:54988621-54988640 None:intergenic 35.0%
TTGCTTATTTCAGGGTCTAA+AGG + chr1_4:54988957-54988976 Msa0170680:intron 35.0%
TTGTTTCACTCATTCAGTTG+AGG + chr1_4:54989142-54989161 Msa0170680:intron 35.0%
TTAAAGACATGCTTGATGTG+TGG + chr1_4:54989193-54989212 Msa0170680:intron 35.0%
!! TGGAATTGAAAGTGTTACTC+TGG + chr1_4:54989287-54989306 Msa0170680:CDS 35.0%
!! GGAATTGAAAGTGTTACTCT+GGG + chr1_4:54989288-54989307 Msa0170680:CDS 35.0%
AATTAGTAACAAAGAGACCG+TGG + chr1_4:54989530-54989549 Msa0170680:intron 35.0%
GACTATCCAATTATTCACCA+CGG - chr1_4:54989550-54989569 None:intergenic 35.0%
!! AAAAAAAAGTGCTGCCACAA+TGG + chr1_4:54989827-54989846 Msa0170680:intron 35.0%
TGGTTGAGGTTTAGATGAAA+AGG + chr1_4:54990356-54990375 Msa0170680:intron 35.0%
AAGTTTATACCTAGCATGGT+TGG + chr1_4:54990435-54990454 Msa0170680:intron 35.0%
AATGTAATCCTAGTTTGGAC+GGG - chr1_4:54990498-54990517 None:intergenic 35.0%
ACTAGGATTACATTAGTGTG+TGG + chr1_4:54990504-54990523 Msa0170680:intron 35.0%
!! TGGGTTCTAGGAAATATAGA+TGG - chr1_4:54990542-54990561 None:intergenic 35.0%
! TCATTGCAAATTTGGGTTCT+AGG - chr1_4:54990554-54990573 None:intergenic 35.0%
! AGCATACATGTTGCATGTTT+TGG - chr1_4:54990666-54990685 None:intergenic 35.0%
!! AGAGTTGGTGTGTGATAAAT+CGG + chr1_4:54990761-54990780 Msa0170680:intron 35.0%
ATACTAACACCTAGGTTTGT+CGG + chr1_4:54991234-54991253 Msa0170680:three_prime_UTR 35.0%
TTAATGGTCTCAGAATCAGA+AGG - chr1_4:54991338-54991357 None:intergenic 35.0%
CGGCATAGCATTTGAATTTG+AGG - chr1_4:54986663-54986682 None:intergenic 40.0%
!! ATTCTGAGGTAAAAGTAGGC+CGG + chr1_4:54987157-54987176 Msa0170680:intron 40.0%
CGCTCTTCATAACTCTAATC+CGG - chr1_4:54987179-54987198 None:intergenic 40.0%
TGATATGATCTCATGTGTGG+AGG + chr1_4:54987381-54987400 Msa0170680:intron 40.0%
AGAGAGTTGGAATATGCTGA+AGG + chr1_4:54987426-54987445 Msa0170680:CDS 40.0%
! AAGGAGCAGTTGGAGATTTT+GGG + chr1_4:54987445-54987464 Msa0170680:CDS 40.0%
TTTGGGAAGGATAATAGAGC+TGG + chr1_4:54987462-54987481 Msa0170680:CDS 40.0%
TCAGCAATAAGGAGTAGGAA+TGG + chr1_4:54987510-54987529 Msa0170680:CDS 40.0%
! GTGTGTGTTAAAGACTTGGT+CGG + chr1_4:54987812-54987831 Msa0170680:intron 40.0%
ACAATTAACAGCGCCAAACA+TGG - chr1_4:54987840-54987859 None:intergenic 40.0%
ATCACGCTATGTTGCATTGA+TGG - chr1_4:54988573-54988592 None:intergenic 40.0%
! CTTCTGACATTTTCTTGCTC+TGG - chr1_4:54989325-54989344 None:intergenic 40.0%
GTCAGAAGACTATTCTTGAG+AGG + chr1_4:54989337-54989356 Msa0170680:CDS 40.0%
AGATGAGAGATAGACACTAC+TGG + chr1_4:54989391-54989410 Msa0170680:CDS 40.0%
GATGAGAGATAGACACTACT+GGG + chr1_4:54989392-54989411 Msa0170680:CDS 40.0%
AAGAGACCGTGGTGAATAAT+TGG + chr1_4:54989541-54989560 Msa0170680:intron 40.0%
CTTCTGGTAATAGCTAGTGA+AGG + chr1_4:54989603-54989622 Msa0170680:intron 40.0%
ATCTATATCGGGCCAGTAAA+AGG + chr1_4:54989856-54989875 Msa0170680:intron 40.0%
TGGTCCTGAACTAAAAAGTG+AGG + chr1_4:54990003-54990022 Msa0170680:intron 40.0%
GGTCCTGAACTAAAAAGTGA+GGG + chr1_4:54990004-54990023 Msa0170680:intron 40.0%
!!! GTACCCTCACTTTTTAGTTC+AGG - chr1_4:54990010-54990029 None:intergenic 40.0%
AGCGTAGATATATTGCTTCG+AGG + chr1_4:54990121-54990140 Msa0170680:CDS 40.0%
AAGAATTACCTCAACCTGTG+GGG - chr1_4:54990152-54990171 None:intergenic 40.0%
GAAGAATTACCTCAACCTGT+GGG - chr1_4:54990153-54990172 None:intergenic 40.0%
TGAAGAATTACCTCAACCTG+TGG - chr1_4:54990154-54990173 None:intergenic 40.0%
! ATGCTCCAAAGGTTTAGAGT+TGG + chr1_4:54990746-54990765 Msa0170680:intron 40.0%
ACACACCAACTCTAAACCTT+TGG - chr1_4:54990754-54990773 None:intergenic 40.0%
CCTAGGTGTTAGTATGGTAA+TGG - chr1_4:54991229-54991248 None:intergenic 40.0%
CCATTACCATACTAACACCT+AGG + chr1_4:54991226-54991245 Msa0170680:three_prime_UTR 40.0%
GACAAACCTAGGTGTTAGTA+TGG - chr1_4:54991235-54991254 None:intergenic 40.0%
TACTAACACCTAGGTTTGTC+GGG + chr1_4:54991235-54991254 Msa0170680:three_prime_UTR 40.0%
AAAAAGCGGAACTGGGGATA+AGG + chr1_4:54986533-54986552 Msa0170680:five_prime_UTR 45.0%
AAAAGCGGAACTGGGGATAA+GGG + chr1_4:54986534-54986553 Msa0170680:five_prime_UTR 45.0%
CTGCAAATGCAATGGCATGT+TGG + chr1_4:54986578-54986597 Msa0170680:CDS 45.0%
GGCATGTTGGTCATGTTTGA+TGG + chr1_4:54986591-54986610 Msa0170680:CDS 45.0%
CATTTGAATTTGAGGGTCGG+TGG - chr1_4:54986655-54986674 None:intergenic 45.0%
GTAGTACCTGTAAGAGAGCA+TGG - chr1_4:54986744-54986763 None:intergenic 45.0%
GACCTACCTCCAAAAGTTGA+GGG - chr1_4:54986874-54986893 None:intergenic 45.0%
CTAGGTAACAGTGAGAGAGT+TGG + chr1_4:54987413-54987432 Msa0170680:intron 45.0%
GAATATGCTGAAGGAGCAGT+TGG + chr1_4:54987435-54987454 Msa0170680:CDS 45.0%
! GAAGGAGCAGTTGGAGATTT+TGG + chr1_4:54987444-54987463 Msa0170680:CDS 45.0%
!! AGCAGTTGGAGATTTTGGGA+AGG + chr1_4:54987449-54987468 Msa0170680:CDS 45.0%
GCAATAAGGAGTAGGAATGG+TGG + chr1_4:54987513-54987532 Msa0170680:CDS 45.0%
AGTAGGAATGGTGGCATTGT+TGG + chr1_4:54987522-54987541 Msa0170680:CDS 45.0%
!! GCATTGTTGGTTTGACGTGT+CGG + chr1_4:54987535-54987554 Msa0170680:CDS 45.0%
! TTGGTTTGACGTGTCGGATT+GGG + chr1_4:54987541-54987560 Msa0170680:CDS 45.0%
TGTCACTGGCCATATTGACA+TGG + chr1_4:54987569-54987588 Msa0170680:CDS 45.0%
AATTTGGATTCTTCCAGGCC+TGG + chr1_4:54988294-54988313 Msa0170680:intron 45.0%
ATTTGGATTCTTCCAGGCCT+GGG + chr1_4:54988295-54988314 Msa0170680:intron 45.0%
ATTCCTCATGCAGCAATAGG+TGG + chr1_4:54988522-54988541 Msa0170680:CDS 45.0%
! GCTATGTTGCATTGATGGCT+CGG - chr1_4:54988568-54988587 None:intergenic 45.0%
GCAACATAGCGTGATGATTG+AGG + chr1_4:54988578-54988597 Msa0170680:CDS 45.0%
! AGCGAGGCATCATGCTTATA+GGG + chr1_4:54988685-54988704 Msa0170680:CDS 45.0%
ATGCTTATAGGGACTGCTCA+TGG + chr1_4:54988696-54988715 Msa0170680:CDS 45.0%
TCTAAAGGCCTGCTTATACC+AGG + chr1_4:54988972-54988991 Msa0170680:intron 45.0%
CTAAAGGCCTGCTTATACCA+GGG + chr1_4:54988973-54988992 Msa0170680:intron 45.0%
CTTTAGACCCTGGTATAAGC+AGG - chr1_4:54988983-54989002 None:intergenic 45.0%
CTGCTTATACCAGGGTCTAA+AGG + chr1_4:54988981-54989000 Msa0170680:intron 45.0%
TAACTCTAGTCAGAGGATGC+TGG + chr1_4:54989055-54989074 Msa0170680:intron 45.0%
ACACTACTGGGTTACACATC+AGG + chr1_4:54989404-54989423 Msa0170680:CDS 45.0%
! TACATTTGGTGAAGGGCTTC+TGG + chr1_4:54989587-54989606 Msa0170680:intron 45.0%
CAGAAAACGGTGGGATGATA+TGG - chr1_4:54989766-54989785 None:intergenic 45.0%
!! CATTGGCTCAAAGCTCAATG+TGG + chr1_4:54989891-54989910 Msa0170680:intron 45.0%
AGGAAAAGACCAACCATGCT+AGG - chr1_4:54990447-54990466 None:intergenic 45.0%
!!! CATGGTTGGTCTTTTCCTCA+TGG + chr1_4:54990449-54990468 Msa0170680:intron 45.0%
GACGGGAAGAATGAGAATTC+GGG - chr1_4:54990481-54990500 None:intergenic 45.0%
GGACGGGAAGAATGAGAATT+CGG - chr1_4:54990482-54990501 None:intergenic 45.0%
TCATTCTTCCCGTCCAAACT+AGG + chr1_4:54990487-54990506 Msa0170680:intron 45.0%
GTGTGTGATAAATCGGCGTA+TGG + chr1_4:54990768-54990787 Msa0170680:intron 45.0%
!!! CTTTCTAGGGCCTCTTTTCT+GGG - chr1_4:54990874-54990893 None:intergenic 45.0%
!!! ACTTTCTAGGGCCTCTTTTC+TGG - chr1_4:54990875-54990894 None:intergenic 45.0%
TTGTTTGTCCCGACAAACCT+AGG - chr1_4:54991246-54991265 None:intergenic 45.0%
GAGAGATAATGCACACAGAG+AGG - chr1_4:54991313-54991332 None:intergenic 45.0%
ACCCGTGAAAAAAGCGGAAC+TGG + chr1_4:54986525-54986544 Msa0170680:five_prime_UTR 50.0%
!!! CCCAGTTCCGCTTTTTTCAC+GGG - chr1_4:54986529-54986548 None:intergenic 50.0%
CCCGTGAAAAAAGCGGAACT+GGG + chr1_4:54986526-54986545 Msa0170680:five_prime_UTR 50.0%
!!! CCCCAGTTCCGCTTTTTTCA+CGG - chr1_4:54986530-54986549 None:intergenic 50.0%
CCGTGAAAAAAGCGGAACTG+GGG + chr1_4:54986527-54986546 Msa0170680:five_prime_UTR 50.0%
CAACAGCAACAACAGCAGCA+TGG + chr1_4:54986617-54986636 Msa0170680:CDS 50.0%
GAACACTGTGACTGTGACTG+TGG - chr1_4:54986700-54986719 None:intergenic 50.0%
! GTACCTGTAAGAGAGCATGG+AGG - chr1_4:54986741-54986760 None:intergenic 50.0%
AAAGTTGAGGGCGGTTAGGT+TGG - chr1_4:54986862-54986881 None:intergenic 50.0%
! ACCTAACCGCCCTCAACTTT+TGG + chr1_4:54986862-54986881 Msa0170680:intron 50.0%
TCCAAAAGTTGAGGGCGGTT+AGG - chr1_4:54986866-54986885 None:intergenic 50.0%
! TAACCGCCCTCAACTTTTGG+AGG + chr1_4:54986865-54986884 Msa0170680:intron 50.0%
CTACCTCCAAAAGTTGAGGG+CGG - chr1_4:54986871-54986890 None:intergenic 50.0%
GGACCTACCTCCAAAAGTTG+AGG - chr1_4:54986875-54986894 None:intergenic 50.0%
GATACCGCGCTTCAGGAAAA+CGG - chr1_4:54987107-54987126 None:intergenic 50.0%
TTTCCTGAAGCGCGGTATCT+AGG + chr1_4:54987108-54987127 Msa0170680:intron 50.0%
GTGTGGAGGAATGTGTAGCT+AGG + chr1_4:54987395-54987414 Msa0170680:intron 50.0%
!! GTTGGTTTGACGTGTCGGAT+TGG + chr1_4:54987540-54987559 Msa0170680:CDS 50.0%
! TTTGACGTGTCGGATTGGGA+GGG + chr1_4:54987545-54987564 Msa0170680:CDS 50.0%
! GACTTGGTCGGTTCCATGTT+TGG + chr1_4:54987824-54987843 Msa0170680:intron 50.0%
TTTGGATTCTTCCAGGCCTG+GGG + chr1_4:54988296-54988315 Msa0170680:intron 50.0%
AAGCTGAAGCTCATGCATGC+CGG + chr1_4:54988652-54988671 Msa0170680:CDS 50.0%
! GAGCGAGGCATCATGCTTAT+AGG + chr1_4:54988684-54988703 Msa0170680:CDS 50.0%
TAATCCTACGCTCTCTGACC+TGG + chr1_4:54988743-54988762 Msa0170680:CDS 50.0%
TCGTAAAGGCCTTTAGACCC+TGG - chr1_4:54988993-54989012 None:intergenic 50.0%
GAATTCGGGCAAAAGCCATG+AGG - chr1_4:54990467-54990486 None:intergenic 50.0%
TGTGACTGTGACTGTGGCTG+TGG - chr1_4:54986694-54986713 None:intergenic 55.0%
CGACCTCCATGCTCTCTTAC+AGG + chr1_4:54986735-54986754 Msa0170680:CDS 55.0%
!! CGCCCTCAACTTTTGGAGGT+AGG + chr1_4:54986869-54986888 Msa0170680:intron 55.0%
TTGCCTAGATACCGCGCTTC+AGG - chr1_4:54987114-54987133 None:intergenic 55.0%
GCGCGGTATCTAGGCAAACA+CGG + chr1_4:54987117-54987136 Msa0170680:intron 55.0%
! GTTTGACGTGTCGGATTGGG+AGG + chr1_4:54987544-54987563 Msa0170680:CDS 55.0%
! ACAGTAGTCTTGCCAACCCC+AGG - chr1_4:54988315-54988334 None:intergenic 55.0%
GCACCACCTATTGCTGCATG+AGG - chr1_4:54988528-54988547 None:intergenic 55.0%
AGGTGGTGCACGTAGAATGC+AGG + chr1_4:54988539-54988558 Msa0170680:CDS 55.0%
! CAAACCAGGTCAGAGAGCGT+AGG - chr1_4:54988750-54988769 None:intergenic 55.0%
AGCGGAACTGGGGATAAGGG+TGG + chr1_4:54986537-54986556 Msa0170680:five_prime_UTR 60.0%
GCGGAACTGGGGATAAGGGT+GGG + chr1_4:54986538-54986557 Msa0170680:five_prime_UTR 60.0%
CGGAACTGGGGATAAGGGTG+GGG + chr1_4:54986539-54986558 Msa0170680:five_prime_UTR 60.0%
GGAACTGGGGATAAGGGTGG+GGG + chr1_4:54986540-54986559 Msa0170680:five_prime_UTR 60.0%
!! TGGGCCGTTTTCCTGAAGCG+CGG + chr1_4:54987100-54987119 Msa0170680:intron 60.0%
GATTCTTCCAGGCCTGGGGT+TGG + chr1_4:54988300-54988319 Msa0170680:intron 60.0%
TGCCTCGCTCAGCAATCGAC+CGG - chr1_4:54988674-54988693 None:intergenic 60.0%
AGGCAAGACCCCACAGGTTG+AGG + chr1_4:54990141-54990160 Msa0170680:CDS 60.0%
CTGTGGCTGTGGCTGAGTCG+CGG - chr1_4:54986683-54986702 None:intergenic 65.0%
! CGGATTGGGAGGGCTGTCAC+TGG + chr1_4:54987555-54987574 Msa0170680:CDS 65.0%
AGTCTTGCCAACCCCAGGCC+TGG - chr1_4:54988310-54988329 None:intergenic 65.0%
TGCCGGTCGATTGCTGAGCG+AGG + chr1_4:54988669-54988688 Msa0170680:CDS 65.0%
GCTTCGAGGCAAGACCCCAC+AGG + chr1_4:54990135-54990154 Msa0170680:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 54986484 54991392 54986484 ID=Msa0170680;Name=Msa0170680
chr1_4 mRNA 54986484 54991392 54986484 ID=Msa0170680-mRNA-1;Parent=Msa0170680;Name=Msa0170680-mRNA-1;_AED=0.13;_eAED=0.13;_QI=87|0.85|1|1|0.85|0.75|8|289|343
chr1_4 exon 54986484 54986756 54986484 ID=Msa0170680-mRNA-1:exon:16433;Parent=Msa0170680-mRNA-1
chr1_4 exon 54987417 54987637 54987417 ID=Msa0170680-mRNA-1:exon:16434;Parent=Msa0170680-mRNA-1
chr1_4 exon 54988311 54988383 54988311 ID=Msa0170680-mRNA-1:exon:16435;Parent=Msa0170680-mRNA-1
chr1_4 exon 54988480 54988764 54988480 ID=Msa0170680-mRNA-1:exon:16436;Parent=Msa0170680-mRNA-1
chr1_4 exon 54989282 54989425 54989282 ID=Msa0170680-mRNA-1:exon:16437;Parent=Msa0170680-mRNA-1
chr1_4 exon 54990112 54990162 54990112 ID=Msa0170680-mRNA-1:exon:16438;Parent=Msa0170680-mRNA-1
chr1_4 exon 54991005 54991261 54991005 ID=Msa0170680-mRNA-1:exon:16439;Parent=Msa0170680-mRNA-1
chr1_4 exon 54991289 54991392 54991289 ID=Msa0170680-mRNA-1:exon:16440;Parent=Msa0170680-mRNA-1
chr1_4 five_prime_UTR 54986484 54986570 54986484 ID=Msa0170680-mRNA-1:five_prime_utr;Parent=Msa0170680-mRNA-1
chr1_4 CDS 54986571 54986756 54986571 ID=Msa0170680-mRNA-1:cds;Parent=Msa0170680-mRNA-1
chr1_4 CDS 54987417 54987637 54987417 ID=Msa0170680-mRNA-1:cds;Parent=Msa0170680-mRNA-1
chr1_4 CDS 54988311 54988383 54988311 ID=Msa0170680-mRNA-1:cds;Parent=Msa0170680-mRNA-1
chr1_4 CDS 54988480 54988764 54988480 ID=Msa0170680-mRNA-1:cds;Parent=Msa0170680-mRNA-1
chr1_4 CDS 54989282 54989425 54989282 ID=Msa0170680-mRNA-1:cds;Parent=Msa0170680-mRNA-1
chr1_4 CDS 54990112 54990162 54990112 ID=Msa0170680-mRNA-1:cds;Parent=Msa0170680-mRNA-1
chr1_4 CDS 54991005 54991076 54991005 ID=Msa0170680-mRNA-1:cds;Parent=Msa0170680-mRNA-1
chr1_4 three_prime_UTR 54991077 54991261 54991077 ID=Msa0170680-mRNA-1:three_prime_utr;Parent=Msa0170680-mRNA-1
chr1_4 three_prime_UTR 54991289 54991392 54991289 ID=Msa0170680-mRNA-1:three_prime_utr;Parent=Msa0170680-mRNA-1
Gene Sequence

>Msa0170680

ATGATAGCTGCAAATGCAATGGCATGTTGGTCATGTTTGATGGCAGCAACAGCAACAACAGCAGCATGGAAATTGAAGTCACCACCGACCCTCAAATTCAAATGCTATGCCGCGACTCAGCCACAGCCACAGTCACAGTCACAGTGTTCTCTTGTGCACAACGACGACCTCCATGCTCTCTTACAGGTAACAGTGAGAGAGTTGGAATATGCTGAAGGAGCAGTTGGAGATTTTGGGAAGGATAATAGAGCTGGTATTGAAGGTACTTTGCACAGAATATCAGCAATAAGGAGTAGGAATGGTGGCATTGTTGGTTTGACGTGTCGGATTGGGAGGGCTGTCACTGGCCATATTGACATGGTTTATGATCTGCTTCAATATGGCAAGAGCATTTTATTTCTTGGAAGGCCTGGGGTTGGCAAGACTACTGTTATGAGAGAGATTGCTCGTGTTCTGTCAGATGAATTTCACAAAAGAGTGGTGATTGTTGATACCAGTAATGAAATTGGAGGTGATGGCAATATTCCTCATGCAGCAATAGGTGGTGCACGTAGAATGCAGGTATCCGAGCCATCAATGCAACATAGCGTGATGATTGAGGCAGTAGAAAATCATATGCCTGAGGTGATTATAGTAGATGAGATTGGCACAGAAGCTGAAGCTCATGCATGCCGGTCGATTGCTGAGCGAGGCATCATGCTTATAGGGACTGCTCATGGACAGCAAATTGAGAATGTCATGAATAATCCTACGCTCTCTGACCTGATTGGTGGAATTGAAAGTGTTACTCTGGGAGACTACGAAGCCAGAGCAAGAAAATGTCAGAAGACTATTCTTGAGAGGAAAGCTCCTCCAACATTTGATTTCTTGATTGAGATGAGAGATAGACACTACTGGGTTACACATCAGACCGACAAAAGCGTAGATATATTGCTTCGAGGCAAGACCCCACAGGTTGAGGTAAGAAAAAGAGATGAGAAATGCAAGGTTGTGATCGAAAAATCTAAAGCATATGATAAGTGTCAAATTTGA

Protein sequence

>Msa0170680

MIAANAMACWSCLMAATATTAAWKLKSPPTLKFKCYAATQPQPQSQSQCSLVHNDDLHALLQVTVRELEYAEGAVGDFGKDNRAGIEGTLHRISAIRSRNGGIVGLTCRIGRAVTGHIDMVYDLLQYGKSILFLGRPGVGKTTVMREIARVLSDEFHKRVVIVDTSNEIGGDGNIPHAAIGGARRMQVSEPSMQHSVMIEAVENHMPEVIIVDEIGTEAEAHACRSIAERGIMLIGTAHGQQIENVMNNPTLSDLIGGIESVTLGDYEARARKCQKTILERKAPPTFDFLIEMRDRHYWVTHQTDKSVDILLRGKTPQVEVRKRDEKCKVVIEKSKAYDKCQI*