AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354040 MtrunA17_Chr8g0392321 95.316 491 5 4 1 491 1 473 0.0 949
Msa1354040 MtrunA17_Chr2g0329091 35.556 405 232 6 93 473 188 587 5.28e-79 257
Msa1354040 MtrunA17_Chr4g0033061 34.198 424 238 9 80 473 172 584 1.40e-73 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354040 AT1G12330.1 54.451 483 162 12 19 472 19 472 9.46e-173 496
Msa1354040 AT5G12900.1 41.139 316 179 4 161 473 247 558 1.44e-80 261

Find 92 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGAAAGTGTACTCTATT+TGG 0.202185 tig0014196:+18593 Msa1354040:three_prime_UTR
ACCAAACATGGTTAGGATTA+TGG 0.210083 tig0014196:+18417 Msa1354040:CDS
ATATACACATTGATTAAAAT+TGG 0.227786 tig0014196:-18662 None:intergenic
TTGGTTTGGAATTTAGAATT+TGG 0.250423 tig0014196:+18612 Msa1354040:three_prime_UTR
TTCAGTTTACATGGAAGATA+TGG 0.260469 tig0014196:+18369 Msa1354040:CDS
CAACGTTGTACAACATTTCT+TGG 0.272548 tig0014196:+17808 Msa1354040:CDS
AATCAATGTGTATATTATAT+TGG 0.278120 tig0014196:+18670 Msa1354040:three_prime_UTR
TTTGTTGTTGCTGAGGTTAT+TGG 0.282756 tig0014196:-18503 None:intergenic
TATTGTCACACTTTGAAATC+TGG 0.312009 tig0014196:+17686 Msa1354040:CDS
AGGGATTAAAGGAGGAGATT+TGG 0.319288 tig0014196:-17000 None:intergenic
TTCAAAAGAATGCTTGTAAT+AGG 0.330527 tig0014196:+18047 Msa1354040:CDS
TGCTATGTTGGGTTGGAATA+GGG 0.335899 tig0014196:+18219 Msa1354040:CDS
TTGCTATGTTGGGTTGGAAT+AGG 0.340560 tig0014196:+18218 Msa1354040:CDS
GGATATGATATGTCGATATA+TGG 0.351949 tig0014196:+18769 Msa1354040:three_prime_UTR
GCTTCATTCAACATGATTCA+TGG 0.354899 tig0014196:+18106 Msa1354040:CDS
TTAAATGTAAGGTTCTTTGC+AGG 0.355993 tig0014196:+18473 Msa1354040:CDS
GCTGTTACTGCTGTTGTTGT+TGG 0.357262 tig0014196:-17417 None:intergenic
CAATGAAGAACAATGGAAAA+TGG 0.357639 tig0014196:+17538 Msa1354040:CDS
GAATGGCGTGAAGGGATTAA+AGG 0.362757 tig0014196:-17011 None:intergenic
AATACTGCTACTAATGTTGT+TGG 0.374603 tig0014196:+17731 Msa1354040:CDS
ATGGATTTGAAAATCCCATT+TGG 0.381416 tig0014196:-17464 None:intergenic
AAAGTGTACTCTATTTGGTT+TGG 0.388488 tig0014196:+18598 Msa1354040:three_prime_UTR
GGTTCTATTGTTGTTTATGT+TGG 0.389790 tig0014196:+18639 Msa1354040:three_prime_UTR
TTGTTGCTTCAAAGAGTGTT+TGG 0.389896 tig0014196:+18272 Msa1354040:CDS
TTGGTGTTGTTCTTCTACTT+TGG 0.395204 tig0014196:-17205 None:intergenic
AATATTATCCGTGACATGTC+AGG 0.397237 tig0014196:-16895 None:intergenic
TGTTGGGTTGGAATAGGGCT+TGG 0.406333 tig0014196:+18224 Msa1354040:CDS
GTATATTATATTGGTGTTGA+TGG 0.412976 tig0014196:+18679 Msa1354040:three_prime_UTR
AAGCTCTTCAAGAAGCTTCA+AGG 0.420955 tig0014196:+17612 Msa1354040:CDS
CAACTTTGATTCAGTTTACA+TGG 0.421670 tig0014196:+18360 Msa1354040:CDS
GGTTGGTACCAAACATGGTT+AGG 0.425331 tig0014196:+18410 Msa1354040:CDS
ACCATAATCCTAACCATGTT+TGG 0.426702 tig0014196:-18418 None:intergenic
ACTTGATGGGTTTAAGGTGA+TGG 0.428119 tig0014196:-18544 None:intergenic
ACATGATTCATGGGTTGACT+TGG 0.437332 tig0014196:+18116 Msa1354040:CDS
TTTGGAGTTGAAGCACTTGT+TGG 0.439726 tig0014196:-17224 None:intergenic
CTTTGTTGCAAAGTCCAAAT+GGG 0.440057 tig0014196:+17450 Msa1354040:CDS
TGTTTGGATGGTTCATTTGT+TGG 0.441093 tig0014196:+18288 Msa1354040:CDS
ACAAAGAAAGCTTGCAAAAG+TGG 0.443973 tig0014196:-18253 None:intergenic
TAATAGGATATTGAACCCTA+TGG 0.449841 tig0014196:+18063 Msa1354040:CDS
GTTAGGATTATGGTTGCTCC+TGG 0.452810 tig0014196:+18427 Msa1354040:CDS
TCAGTTTACATGGAAGATAT+GGG 0.453427 tig0014196:+18370 Msa1354040:CDS
CTTCATTCAACATGATTCAT+GGG 0.453738 tig0014196:+18107 Msa1354040:CDS
TGGAATTTAGAATTTGGATC+AGG 0.454327 tig0014196:+18618 Msa1354040:three_prime_UTR
CTTGATGGGTTTAAGGTGAT+GGG 0.456935 tig0014196:-18543 None:intergenic
TTGATATTGATTGGTGTTGG+TGG 0.458109 tig0014196:-17269 None:intergenic
TCTTTGTTGCAAAGTCCAAA+TGG 0.458726 tig0014196:+17449 Msa1354040:CDS
TGATGATTGATATTGTGCTT+TGG 0.465945 tig0014196:-17242 None:intergenic
TATATTATATTGGTGTTGAT+GGG 0.465982 tig0014196:+18680 Msa1354040:three_prime_UTR
AGTGAAATTGTTGCTATGTT+GGG 0.472103 tig0014196:+18208 Msa1354040:CDS
TTGTTGATATTGATTGGTGT+TGG 0.475429 tig0014196:-17272 None:intergenic
GAGTGAAATTGTTGCTATGT+TGG 0.475944 tig0014196:+18207 Msa1354040:CDS
TTATATTGGTGTTGATGGGT+TGG 0.485131 tig0014196:+18684 Msa1354040:three_prime_UTR
CTTGATTCACACCTTTCCAT+AGG 0.488970 tig0014196:-18079 None:intergenic
TGGTAGTGCTGTTAAATGTA+AGG 0.493435 tig0014196:+18462 Msa1354040:CDS
TTTGTTGTTGATGCTGACAT+TGG 0.496621 tig0014196:-17512 None:intergenic
TTGAATGATATGATAATGGT+AGG 0.496723 tig0014196:-16922 None:intergenic
TCTTGTTAGCTTTGAAACAA+TGG 0.500929 tig0014196:-17483 None:intergenic
TATCCGTGACATGTCAGGGC+AGG 0.511446 tig0014196:-16890 None:intergenic
TTGGGTCAACGTGAACAACT+TGG 0.513386 tig0014196:+18798 Msa1354040:three_prime_UTR
CGTTGTACAACATTTCTTGG+TGG 0.514695 tig0014196:+17811 Msa1354040:CDS
TTGATTCACACCTTTCCATA+GGG 0.520693 tig0014196:-18078 None:intergenic
TTCAAGGTTGGTACCAAACA+TGG 0.524833 tig0014196:+18405 Msa1354040:CDS
TGTCTTGTTTGTTGTTGCTG+AGG 0.529272 tig0014196:-18510 None:intergenic
TGGGTGGGGACAAGTCTTCA+AGG 0.532792 tig0014196:+18389 Msa1354040:CDS
GGAGATTTGGAAGAAGAAGA+AGG 0.534128 tig0014196:-16987 None:intergenic
AAATTGTTGCTATGTTGGGT+TGG 0.545805 tig0014196:+18212 Msa1354040:CDS
TGCTTCAAAGAGTGTTTGGA+TGG 0.549445 tig0014196:+18276 Msa1354040:CDS
ATTAAATATGCAGATTCAAG+AGG 0.551509 tig0014196:+17142 Msa1354040:intron
TCTGAAACTGAACTAGAAGA+TGG 0.555922 tig0014196:+17326 Msa1354040:CDS
TGGCGTGAAGGGATTAAAGG+AGG 0.561993 tig0014196:-17008 None:intergenic
GTTGTTGTTGGAATGATCAA+AGG 0.567800 tig0014196:-17405 None:intergenic
TACTAAACTGGTGTGAATTG+TGG 0.581713 tig0014196:-17035 None:intergenic
ACAGTACAGTACCGAGGAGG+TGG 0.584764 tig0014196:-16865 None:intergenic
TGCCCTGCCCTGACATGTCA+CGG 0.588131 tig0014196:+16887 Msa1354040:five_prime_UTR
ATCCGTGACATGTCAGGGCA+GGG 0.592324 tig0014196:-16889 None:intergenic
CATGATTCATGGGTTGACTT+GGG 0.593679 tig0014196:+18117 Msa1354040:CDS
ATTGTGGAGAATGGCGTGAA+GGG 0.597358 tig0014196:-17019 None:intergenic
GGATATTGAACCCTATGGAA+AGG 0.598272 tig0014196:+18068 Msa1354040:CDS
ATATTATCCGTGACATGTCA+GGG 0.601359 tig0014196:-16894 None:intergenic
CTGGTGTGAATTGTGGAGAA+TGG 0.603934 tig0014196:-17028 None:intergenic
TTTACATGGAAGATATGGGT+GGG 0.604216 tig0014196:+18374 Msa1354040:CDS
TTGTTGTTGGAATGATCAAA+GGG 0.606933 tig0014196:-17404 None:intergenic
CAAACAACAATGAAGAACAA+TGG 0.609170 tig0014196:+17531 Msa1354040:CDS
AATTGTGGAGAATGGCGTGA+AGG 0.614898 tig0014196:-17020 None:intergenic
TTACATGGAAGATATGGGTG+GGG 0.625227 tig0014196:+18375 Msa1354040:CDS
TGGGGACAAGTCTTCAAGGT+TGG 0.629308 tig0014196:+18393 Msa1354040:CDS
GTTTACATGGAAGATATGGG+TGG 0.633305 tig0014196:+18373 Msa1354040:CDS
ACAATGCAACTTAGACACAC+AGG 0.633999 tig0014196:+17881 Msa1354040:CDS
TGTTGGAATGATCAAAGGGA+AGG 0.654140 tig0014196:-17400 None:intergenic
CAGGGCACAGTACAGTACCG+AGG 0.662777 tig0014196:-16871 None:intergenic
AGCAACAACAAACAAGACAA+AGG 0.670945 tig0014196:+18514 Msa1354040:CDS
GGCACAGTACAGTACCGAGG+AGG 0.741209 tig0014196:-16868 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTGATTTTTAATG+TGG + tig0014196:18569-18588 Msa1354040:three_prime_UTR 10.0%
!!! TTTATTTTTGATTTTTAATG+TGG + tig0014196:18569-18588 Msa1354040:three_prime_UTR 10.0%
!!! ATTTTTGAATGATATGATAA+TGG - tig0014196:16929-16948 None:intergenic 15.0%
!!! AAAGAGATTTTTATATCATA+AGG - tig0014196:17944-17963 None:intergenic 15.0%
!! TCAAAAATAAAAAACTTGAT+GGG - tig0014196:18560-18579 None:intergenic 15.0%
!! ATCAAAAATAAAAAACTTGA+TGG - tig0014196:18561-18580 None:intergenic 15.0%
!!! ATATACACATTGATTAAAAT+TGG - tig0014196:18665-18684 None:intergenic 15.0%
!! AATCAATGTGTATATTATAT+TGG + tig0014196:18670-18689 Msa1354040:three_prime_UTR 15.0%
!!! ATTTTTGAATGATATGATAA+TGG - tig0014196:16929-16948 None:intergenic 15.0%
!!! AAAGAGATTTTTATATCATA+AGG - tig0014196:17944-17963 None:intergenic 15.0%
!! TCAAAAATAAAAAACTTGAT+GGG - tig0014196:18560-18579 None:intergenic 15.0%
!! ATCAAAAATAAAAAACTTGA+TGG - tig0014196:18561-18580 None:intergenic 15.0%
!!! ATATACACATTGATTAAAAT+TGG - tig0014196:18665-18684 None:intergenic 15.0%
!! AATCAATGTGTATATTATAT+TGG + tig0014196:18670-18689 Msa1354040:three_prime_UTR 15.0%
!!! TTTGATTTTTAATGTGGAAT+TGG + tig0014196:18575-18594 Msa1354040:three_prime_UTR 20.0%
!!! TATATTATATTGGTGTTGAT+GGG + tig0014196:18680-18699 Msa1354040:three_prime_UTR 20.0%
!!! TTTGATTTTTAATGTGGAAT+TGG + tig0014196:18575-18594 Msa1354040:three_prime_UTR 20.0%
!!! TATATTATATTGGTGTTGAT+GGG + tig0014196:18680-18699 Msa1354040:three_prime_UTR 20.0%
!!! TTGAATGATATGATAATGGT+AGG - tig0014196:16925-16944 None:intergenic 25.0%
!!! AGTCATTTTTGAGAGATAAT+TGG - tig0014196:16961-16980 None:intergenic 25.0%
! GTATGAAAATGTTACTAAAC+TGG - tig0014196:17050-17069 None:intergenic 25.0%
! ATTAAATATGCAGATTCAAG+AGG + tig0014196:17142-17161 Msa1354040:intron 25.0%
!!! GTGTTTTTGTTGATATTGAT+TGG - tig0014196:17281-17300 None:intergenic 25.0%
! AAGTAAAAAAGCAAACTTCT+TGG - tig0014196:17977-17996 None:intergenic 25.0%
!!! AAGAAGTTTGCTTTTTTACT+TGG + tig0014196:17976-17995 Msa1354040:CDS 25.0%
!!! TTTGAACAAGACATTTTTTG+AGG + tig0014196:18006-18025 Msa1354040:CDS 25.0%
! TTCAAAAGAATGCTTGTAAT+AGG + tig0014196:18047-18066 Msa1354040:CDS 25.0%
!! CCTTTATCAACTCTAAAAAT+TGG - tig0014196:18337-18356 None:intergenic 25.0%
!!! CCAATTTTTAGAGTTGATAA+AGG + tig0014196:18334-18353 Msa1354040:CDS 25.0%
!!! TAAAAAACTTGATGGGTTTA+AGG - tig0014196:18553-18572 None:intergenic 25.0%
!!! TTGGTTTGGAATTTAGAATT+TGG + tig0014196:18612-18631 Msa1354040:three_prime_UTR 25.0%
!!! GTATATTATATTGGTGTTGA+TGG + tig0014196:18679-18698 Msa1354040:three_prime_UTR 25.0%
!!! TTGAATGATATGATAATGGT+AGG - tig0014196:16925-16944 None:intergenic 25.0%
!!! AGTCATTTTTGAGAGATAAT+TGG - tig0014196:16961-16980 None:intergenic 25.0%
! GTATGAAAATGTTACTAAAC+TGG - tig0014196:17050-17069 None:intergenic 25.0%
! ATTAAATATGCAGATTCAAG+AGG + tig0014196:17142-17161 Msa1354040:intron 25.0%
!!! GTGTTTTTGTTGATATTGAT+TGG - tig0014196:17281-17300 None:intergenic 25.0%
! AAGTAAAAAAGCAAACTTCT+TGG - tig0014196:17977-17996 None:intergenic 25.0%
!!! AAGAAGTTTGCTTTTTTACT+TGG + tig0014196:17976-17995 Msa1354040:CDS 25.0%
!!! TTTGAACAAGACATTTTTTG+AGG + tig0014196:18006-18025 Msa1354040:CDS 25.0%
! TTCAAAAGAATGCTTGTAAT+AGG + tig0014196:18047-18066 Msa1354040:CDS 25.0%
!! CCTTTATCAACTCTAAAAAT+TGG - tig0014196:18337-18356 None:intergenic 25.0%
!!! CCAATTTTTAGAGTTGATAA+AGG + tig0014196:18334-18353 Msa1354040:CDS 25.0%
!!! TAAAAAACTTGATGGGTTTA+AGG - tig0014196:18553-18572 None:intergenic 25.0%
!!! TTGGTTTGGAATTTAGAATT+TGG + tig0014196:18612-18631 Msa1354040:three_prime_UTR 25.0%
!!! GTATATTATATTGGTGTTGA+TGG + tig0014196:18679-18698 Msa1354040:three_prime_UTR 25.0%
!! CATTTTTGAGAGATAATTGG+TGG - tig0014196:16958-16977 None:intergenic 30.0%
TGATGATTGATATTGTGCTT+TGG - tig0014196:17245-17264 None:intergenic 30.0%
! TTGTTGATATTGATTGGTGT+TGG - tig0014196:17275-17294 None:intergenic 30.0%
!!! GAACGTTTTTTCTTGTGATT+TGG - tig0014196:17308-17327 None:intergenic 30.0%
! TTGTTGTTGGAATGATCAAA+GGG - tig0014196:17407-17426 None:intergenic 30.0%
ATGGATTTGAAAATCCCATT+TGG - tig0014196:17467-17486 None:intergenic 30.0%
!! TCTTGTTAGCTTTGAAACAA+TGG - tig0014196:17486-17505 None:intergenic 30.0%
CAAACAACAATGAAGAACAA+TGG + tig0014196:17531-17550 Msa1354040:CDS 30.0%
CAATGAAGAACAATGGAAAA+TGG + tig0014196:17538-17557 Msa1354040:CDS 30.0%
!! TATTGTCACACTTTGAAATC+TGG + tig0014196:17686-17705 Msa1354040:CDS 30.0%
AATACTGCTACTAATGTTGT+TGG + tig0014196:17731-17750 Msa1354040:CDS 30.0%
!! TTTGAGGATTTTGAGTCAAT+TGG + tig0014196:18022-18041 Msa1354040:CDS 30.0%
!! TTGAGGATTTTGAGTCAATT+GGG + tig0014196:18023-18042 Msa1354040:CDS 30.0%
TAATAGGATATTGAACCCTA+TGG + tig0014196:18063-18082 Msa1354040:CDS 30.0%
CTTCATTCAACATGATTCAT+GGG + tig0014196:18107-18126 Msa1354040:CDS 30.0%
AGTGAAATTGTTGCTATGTT+GGG + tig0014196:18208-18227 Msa1354040:CDS 30.0%
! ACTCTAAAAATTGGCAAACT+TGG - tig0014196:18328-18347 None:intergenic 30.0%
CAACTTTGATTCAGTTTACA+TGG + tig0014196:18360-18379 Msa1354040:CDS 30.0%
TTCAGTTTACATGGAAGATA+TGG + tig0014196:18369-18388 Msa1354040:CDS 30.0%
TCAGTTTACATGGAAGATAT+GGG + tig0014196:18370-18389 Msa1354040:CDS 30.0%
TTAAATGTAAGGTTCTTTGC+AGG + tig0014196:18473-18492 Msa1354040:CDS 30.0%
! ATTGGAAAGTGTACTCTATT+TGG + tig0014196:18593-18612 Msa1354040:three_prime_UTR 30.0%
AAAGTGTACTCTATTTGGTT+TGG + tig0014196:18598-18617 Msa1354040:three_prime_UTR 30.0%
! TGGAATTTAGAATTTGGATC+AGG + tig0014196:18618-18637 Msa1354040:three_prime_UTR 30.0%
!! GGTTCTATTGTTGTTTATGT+TGG + tig0014196:18639-18658 Msa1354040:three_prime_UTR 30.0%
! TGTATTTTTCATGCTTGAGT+TGG + tig0014196:18747-18766 Msa1354040:three_prime_UTR 30.0%
! GTATTTTTCATGCTTGAGTT+GGG + tig0014196:18748-18767 Msa1354040:three_prime_UTR 30.0%
GGATATGATATGTCGATATA+TGG + tig0014196:18769-18788 Msa1354040:three_prime_UTR 30.0%
!!! TGTCGATATATGGAGTTTTT+TGG + tig0014196:18779-18798 Msa1354040:three_prime_UTR 30.0%
!!! GTCGATATATGGAGTTTTTT+GGG + tig0014196:18780-18799 Msa1354040:three_prime_UTR 30.0%
!! CATTTTTGAGAGATAATTGG+TGG - tig0014196:16958-16977 None:intergenic 30.0%
TGATGATTGATATTGTGCTT+TGG - tig0014196:17245-17264 None:intergenic 30.0%
! TTGTTGATATTGATTGGTGT+TGG - tig0014196:17275-17294 None:intergenic 30.0%
!!! GAACGTTTTTTCTTGTGATT+TGG - tig0014196:17308-17327 None:intergenic 30.0%
! TTGTTGTTGGAATGATCAAA+GGG - tig0014196:17407-17426 None:intergenic 30.0%
ATGGATTTGAAAATCCCATT+TGG - tig0014196:17467-17486 None:intergenic 30.0%
!! TCTTGTTAGCTTTGAAACAA+TGG - tig0014196:17486-17505 None:intergenic 30.0%
CAAACAACAATGAAGAACAA+TGG + tig0014196:17531-17550 Msa1354040:CDS 30.0%
CAATGAAGAACAATGGAAAA+TGG + tig0014196:17538-17557 Msa1354040:CDS 30.0%
!! TATTGTCACACTTTGAAATC+TGG + tig0014196:17686-17705 Msa1354040:CDS 30.0%
AATACTGCTACTAATGTTGT+TGG + tig0014196:17731-17750 Msa1354040:CDS 30.0%
!! TTTGAGGATTTTGAGTCAAT+TGG + tig0014196:18022-18041 Msa1354040:CDS 30.0%
!! TTGAGGATTTTGAGTCAATT+GGG + tig0014196:18023-18042 Msa1354040:CDS 30.0%
TAATAGGATATTGAACCCTA+TGG + tig0014196:18063-18082 Msa1354040:CDS 30.0%
CTTCATTCAACATGATTCAT+GGG + tig0014196:18107-18126 Msa1354040:CDS 30.0%
AGTGAAATTGTTGCTATGTT+GGG + tig0014196:18208-18227 Msa1354040:CDS 30.0%
! ACTCTAAAAATTGGCAAACT+TGG - tig0014196:18328-18347 None:intergenic 30.0%
CAACTTTGATTCAGTTTACA+TGG + tig0014196:18360-18379 Msa1354040:CDS 30.0%
TTCAGTTTACATGGAAGATA+TGG + tig0014196:18369-18388 Msa1354040:CDS 30.0%
TCAGTTTACATGGAAGATAT+GGG + tig0014196:18370-18389 Msa1354040:CDS 30.0%
TTAAATGTAAGGTTCTTTGC+AGG + tig0014196:18473-18492 Msa1354040:CDS 30.0%
! ATTGGAAAGTGTACTCTATT+TGG + tig0014196:18593-18612 Msa1354040:three_prime_UTR 30.0%
AAAGTGTACTCTATTTGGTT+TGG + tig0014196:18598-18617 Msa1354040:three_prime_UTR 30.0%
! TGGAATTTAGAATTTGGATC+AGG + tig0014196:18618-18637 Msa1354040:three_prime_UTR 30.0%
!! GGTTCTATTGTTGTTTATGT+TGG + tig0014196:18639-18658 Msa1354040:three_prime_UTR 30.0%
! TGTATTTTTCATGCTTGAGT+TGG + tig0014196:18747-18766 Msa1354040:three_prime_UTR 30.0%
! GTATTTTTCATGCTTGAGTT+GGG + tig0014196:18748-18767 Msa1354040:three_prime_UTR 30.0%
GGATATGATATGTCGATATA+TGG + tig0014196:18769-18788 Msa1354040:three_prime_UTR 30.0%
!!! TGTCGATATATGGAGTTTTT+TGG + tig0014196:18779-18798 Msa1354040:three_prime_UTR 30.0%
!!! GTCGATATATGGAGTTTTTT+GGG + tig0014196:18780-18799 Msa1354040:three_prime_UTR 30.0%
ATATTATCCGTGACATGTCA+GGG - tig0014196:16897-16916 None:intergenic 35.0%
AATATTATCCGTGACATGTC+AGG - tig0014196:16898-16917 None:intergenic 35.0%
TACTAAACTGGTGTGAATTG+TGG - tig0014196:17038-17057 None:intergenic 35.0%
!! TTGGTGTTGTTCTTCTACTT+TGG - tig0014196:17208-17227 None:intergenic 35.0%
!! TTGATATTGATTGGTGTTGG+TGG - tig0014196:17272-17291 None:intergenic 35.0%
! TCTGAAACTGAACTAGAAGA+TGG + tig0014196:17326-17345 Msa1354040:CDS 35.0%
! AAGATTTTGTCACGAGAATG+TGG - tig0014196:17377-17396 None:intergenic 35.0%
! GTTGTTGTTGGAATGATCAA+AGG - tig0014196:17408-17427 None:intergenic 35.0%
TCTTTGTTGCAAAGTCCAAA+TGG + tig0014196:17449-17468 Msa1354040:CDS 35.0%
CTTTGTTGCAAAGTCCAAAT+GGG + tig0014196:17450-17469 Msa1354040:CDS 35.0%
!! TTTGTTGTTGATGCTGACAT+TGG - tig0014196:17515-17534 None:intergenic 35.0%
! AGCTTCATCTCTTTTTCTTG+TGG - tig0014196:17597-17616 None:intergenic 35.0%
CAACGTTGTACAACATTTCT+TGG + tig0014196:17808-17827 Msa1354040:CDS 35.0%
TTGATTCACACCTTTCCATA+GGG - tig0014196:18081-18100 None:intergenic 35.0%
GCTTCATTCAACATGATTCA+TGG + tig0014196:18106-18125 Msa1354040:CDS 35.0%
GAGTGAAATTGTTGCTATGT+TGG + tig0014196:18207-18226 Msa1354040:CDS 35.0%
AAATTGTTGCTATGTTGGGT+TGG + tig0014196:18212-18231 Msa1354040:CDS 35.0%
ACAAAGAAAGCTTGCAAAAG+TGG - tig0014196:18256-18275 None:intergenic 35.0%
!! TTGTTGCTTCAAAGAGTGTT+TGG + tig0014196:18272-18291 Msa1354040:CDS 35.0%
TGTTTGGATGGTTCATTTGT+TGG + tig0014196:18288-18307 Msa1354040:CDS 35.0%
TTTACATGGAAGATATGGGT+GGG + tig0014196:18374-18393 Msa1354040:CDS 35.0%
ACCAAACATGGTTAGGATTA+TGG + tig0014196:18417-18436 Msa1354040:CDS 35.0%
ACCATAATCCTAACCATGTT+TGG - tig0014196:18421-18440 None:intergenic 35.0%
CTACCATAGACATAAAAACC+AGG - tig0014196:18448-18467 None:intergenic 35.0%
! TGGTAGTGCTGTTAAATGTA+AGG + tig0014196:18462-18481 Msa1354040:CDS 35.0%
!! TTTGTTGTTGCTGAGGTTAT+TGG - tig0014196:18506-18525 None:intergenic 35.0%
AGCAACAACAAACAAGACAA+AGG + tig0014196:18514-18533 Msa1354040:CDS 35.0%
!! TTATATTGGTGTTGATGGGT+TGG + tig0014196:18684-18703 Msa1354040:three_prime_UTR 35.0%
ATATTATCCGTGACATGTCA+GGG - tig0014196:16897-16916 None:intergenic 35.0%
AATATTATCCGTGACATGTC+AGG - tig0014196:16898-16917 None:intergenic 35.0%
TACTAAACTGGTGTGAATTG+TGG - tig0014196:17038-17057 None:intergenic 35.0%
!! TTGGTGTTGTTCTTCTACTT+TGG - tig0014196:17208-17227 None:intergenic 35.0%
!! TTGATATTGATTGGTGTTGG+TGG - tig0014196:17272-17291 None:intergenic 35.0%
! TCTGAAACTGAACTAGAAGA+TGG + tig0014196:17326-17345 Msa1354040:CDS 35.0%
! AAGATTTTGTCACGAGAATG+TGG - tig0014196:17377-17396 None:intergenic 35.0%
! GTTGTTGTTGGAATGATCAA+AGG - tig0014196:17408-17427 None:intergenic 35.0%
TCTTTGTTGCAAAGTCCAAA+TGG + tig0014196:17449-17468 Msa1354040:CDS 35.0%
CTTTGTTGCAAAGTCCAAAT+GGG + tig0014196:17450-17469 Msa1354040:CDS 35.0%
!! TTTGTTGTTGATGCTGACAT+TGG - tig0014196:17515-17534 None:intergenic 35.0%
! AGCTTCATCTCTTTTTCTTG+TGG - tig0014196:17597-17616 None:intergenic 35.0%
CAACGTTGTACAACATTTCT+TGG + tig0014196:17808-17827 Msa1354040:CDS 35.0%
TTGATTCACACCTTTCCATA+GGG - tig0014196:18081-18100 None:intergenic 35.0%
GCTTCATTCAACATGATTCA+TGG + tig0014196:18106-18125 Msa1354040:CDS 35.0%
GAGTGAAATTGTTGCTATGT+TGG + tig0014196:18207-18226 Msa1354040:CDS 35.0%
AAATTGTTGCTATGTTGGGT+TGG + tig0014196:18212-18231 Msa1354040:CDS 35.0%
ACAAAGAAAGCTTGCAAAAG+TGG - tig0014196:18256-18275 None:intergenic 35.0%
!! TTGTTGCTTCAAAGAGTGTT+TGG + tig0014196:18272-18291 Msa1354040:CDS 35.0%
TGTTTGGATGGTTCATTTGT+TGG + tig0014196:18288-18307 Msa1354040:CDS 35.0%
TTTACATGGAAGATATGGGT+GGG + tig0014196:18374-18393 Msa1354040:CDS 35.0%
ACCAAACATGGTTAGGATTA+TGG + tig0014196:18417-18436 Msa1354040:CDS 35.0%
ACCATAATCCTAACCATGTT+TGG - tig0014196:18421-18440 None:intergenic 35.0%
CTACCATAGACATAAAAACC+AGG - tig0014196:18448-18467 None:intergenic 35.0%
! TGGTAGTGCTGTTAAATGTA+AGG + tig0014196:18462-18481 Msa1354040:CDS 35.0%
!! TTTGTTGTTGCTGAGGTTAT+TGG - tig0014196:18506-18525 None:intergenic 35.0%
AGCAACAACAAACAAGACAA+AGG + tig0014196:18514-18533 Msa1354040:CDS 35.0%
!! TTATATTGGTGTTGATGGGT+TGG + tig0014196:18684-18703 Msa1354040:three_prime_UTR 35.0%
!!! TTTTTTTTGGACCACCTCCT+CGG + tig0014196:16854-16873 Msa1354040:five_prime_UTR 40.0%
GGAGATTTGGAAGAAGAAGA+AGG - tig0014196:16990-17009 None:intergenic 40.0%
AGGGATTAAAGGAGGAGATT+TGG - tig0014196:17003-17022 None:intergenic 40.0%
! TTGGCTTCTGTTTTCACTGT+TGG - tig0014196:17189-17208 None:intergenic 40.0%
! TTTGGAGTTGAAGCACTTGT+TGG - tig0014196:17227-17246 None:intergenic 40.0%
TGTTGGAATGATCAAAGGGA+AGG - tig0014196:17403-17422 None:intergenic 40.0%
AAGCTCTTCAAGAAGCTTCA+AGG + tig0014196:17612-17631 Msa1354040:CDS 40.0%
CGTTGTACAACATTTCTTGG+TGG + tig0014196:17811-17830 Msa1354040:CDS 40.0%
ACAATGCAACTTAGACACAC+AGG + tig0014196:17881-17900 Msa1354040:CDS 40.0%
GGATATTGAACCCTATGGAA+AGG + tig0014196:18068-18087 Msa1354040:CDS 40.0%
CTTGATTCACACCTTTCCAT+AGG - tig0014196:18082-18101 None:intergenic 40.0%
! ACATGATTCATGGGTTGACT+TGG + tig0014196:18116-18135 Msa1354040:CDS 40.0%
! CATGATTCATGGGTTGACTT+GGG + tig0014196:18117-18136 Msa1354040:CDS 40.0%
!!! TGGGATGAAGTTTTGAGCAA+AGG + tig0014196:18136-18155 Msa1354040:CDS 40.0%
!!! GGGATGAAGTTTTGAGCAAA+GGG + tig0014196:18137-18156 Msa1354040:CDS 40.0%
!! TTGCTATGTTGGGTTGGAAT+AGG + tig0014196:18218-18237 Msa1354040:CDS 40.0%
!! TGCTATGTTGGGTTGGAATA+GGG + tig0014196:18219-18238 Msa1354040:CDS 40.0%
!! TGCTTCAAAGAGTGTTTGGA+TGG + tig0014196:18276-18295 Msa1354040:CDS 40.0%
GTTTACATGGAAGATATGGG+TGG + tig0014196:18373-18392 Msa1354040:CDS 40.0%
TTACATGGAAGATATGGGTG+GGG + tig0014196:18375-18394 Msa1354040:CDS 40.0%
!! TTCAAGGTTGGTACCAAACA+TGG + tig0014196:18405-18424 Msa1354040:CDS 40.0%
!! GCTCCTGGTTTTTATGTCTA+TGG + tig0014196:18442-18461 Msa1354040:CDS 40.0%
!! TGTCTTGTTTGTTGTTGCTG+AGG - tig0014196:18513-18532 None:intergenic 40.0%
!! CTTGATGGGTTTAAGGTGAT+GGG - tig0014196:18546-18565 None:intergenic 40.0%
!! ACTTGATGGGTTTAAGGTGA+TGG - tig0014196:18547-18566 None:intergenic 40.0%
! GTGAACAACTTGGCATTTTC+TGG + tig0014196:18808-18827 Msa1354040:three_prime_UTR 40.0%
GGAGGTGGTCCAAAAAAAAT+TGG - tig0014196:16853-16872 None:intergenic 40.0%
!!! TTTTTTTTGGACCACCTCCT+CGG + tig0014196:16854-16873 Msa1354040:five_prime_UTR 40.0%
GGAGATTTGGAAGAAGAAGA+AGG - tig0014196:16990-17009 None:intergenic 40.0%
AGGGATTAAAGGAGGAGATT+TGG - tig0014196:17003-17022 None:intergenic 40.0%
! TTGGCTTCTGTTTTCACTGT+TGG - tig0014196:17189-17208 None:intergenic 40.0%
! TTTGGAGTTGAAGCACTTGT+TGG - tig0014196:17227-17246 None:intergenic 40.0%
TGTTGGAATGATCAAAGGGA+AGG - tig0014196:17403-17422 None:intergenic 40.0%
AAGCTCTTCAAGAAGCTTCA+AGG + tig0014196:17612-17631 Msa1354040:CDS 40.0%
CGTTGTACAACATTTCTTGG+TGG + tig0014196:17811-17830 Msa1354040:CDS 40.0%
ACAATGCAACTTAGACACAC+AGG + tig0014196:17881-17900 Msa1354040:CDS 40.0%
GGATATTGAACCCTATGGAA+AGG + tig0014196:18068-18087 Msa1354040:CDS 40.0%
CTTGATTCACACCTTTCCAT+AGG - tig0014196:18082-18101 None:intergenic 40.0%
! ACATGATTCATGGGTTGACT+TGG + tig0014196:18116-18135 Msa1354040:CDS 40.0%
! CATGATTCATGGGTTGACTT+GGG + tig0014196:18117-18136 Msa1354040:CDS 40.0%
!!! TGGGATGAAGTTTTGAGCAA+AGG + tig0014196:18136-18155 Msa1354040:CDS 40.0%
!!! GGGATGAAGTTTTGAGCAAA+GGG + tig0014196:18137-18156 Msa1354040:CDS 40.0%
!! TTGCTATGTTGGGTTGGAAT+AGG + tig0014196:18218-18237 Msa1354040:CDS 40.0%
!! TGCTATGTTGGGTTGGAATA+GGG + tig0014196:18219-18238 Msa1354040:CDS 40.0%
!! TGCTTCAAAGAGTGTTTGGA+TGG + tig0014196:18276-18295 Msa1354040:CDS 40.0%
GTTTACATGGAAGATATGGG+TGG + tig0014196:18373-18392 Msa1354040:CDS 40.0%
TTACATGGAAGATATGGGTG+GGG + tig0014196:18375-18394 Msa1354040:CDS 40.0%
!! TTCAAGGTTGGTACCAAACA+TGG + tig0014196:18405-18424 Msa1354040:CDS 40.0%
!! GCTCCTGGTTTTTATGTCTA+TGG + tig0014196:18442-18461 Msa1354040:CDS 40.0%
!! TGTCTTGTTTGTTGTTGCTG+AGG - tig0014196:18513-18532 None:intergenic 40.0%
!! CTTGATGGGTTTAAGGTGAT+GGG - tig0014196:18546-18565 None:intergenic 40.0%
!! ACTTGATGGGTTTAAGGTGA+TGG - tig0014196:18547-18566 None:intergenic 40.0%
! GTGAACAACTTGGCATTTTC+TGG + tig0014196:18808-18827 Msa1354040:three_prime_UTR 40.0%
GAATGGCGTGAAGGGATTAA+AGG - tig0014196:17014-17033 None:intergenic 45.0%
ATTGTGGAGAATGGCGTGAA+GGG - tig0014196:17022-17041 None:intergenic 45.0%
AATTGTGGAGAATGGCGTGA+AGG - tig0014196:17023-17042 None:intergenic 45.0%
CTGGTGTGAATTGTGGAGAA+TGG - tig0014196:17031-17050 None:intergenic 45.0%
GCTGTTACTGCTGTTGTTGT+TGG - tig0014196:17420-17439 None:intergenic 45.0%
! GGTTGGTACCAAACATGGTT+AGG + tig0014196:18410-18429 Msa1354040:CDS 45.0%
GTTAGGATTATGGTTGCTCC+TGG + tig0014196:18427-18446 Msa1354040:CDS 45.0%
TTGGGTCAACGTGAACAACT+TGG + tig0014196:18798-18817 Msa1354040:three_prime_UTR 45.0%
GAATGGCGTGAAGGGATTAA+AGG - tig0014196:17014-17033 None:intergenic 45.0%
ATTGTGGAGAATGGCGTGAA+GGG - tig0014196:17022-17041 None:intergenic 45.0%
AATTGTGGAGAATGGCGTGA+AGG - tig0014196:17023-17042 None:intergenic 45.0%
CTGGTGTGAATTGTGGAGAA+TGG - tig0014196:17031-17050 None:intergenic 45.0%
GCTGTTACTGCTGTTGTTGT+TGG - tig0014196:17420-17439 None:intergenic 45.0%
! GGTTGGTACCAAACATGGTT+AGG + tig0014196:18410-18429 Msa1354040:CDS 45.0%
GTTAGGATTATGGTTGCTCC+TGG + tig0014196:18427-18446 Msa1354040:CDS 45.0%
TTGGGTCAACGTGAACAACT+TGG + tig0014196:18798-18817 Msa1354040:three_prime_UTR 45.0%
!!! TTTTATTTTTTTTTATCATA+TGG + tig0014196:17098-17117 Msa1354040:intron 5.0%
!!! TTTTATTTTTTTTTATCATA+TGG + tig0014196:17098-17117 Msa1354040:intron 5.0%
TGGCGTGAAGGGATTAAAGG+AGG - tig0014196:17011-17030 None:intergenic 50.0%
!! TGTTGGGTTGGAATAGGGCT+TGG + tig0014196:18224-18243 Msa1354040:CDS 50.0%
TGGGGACAAGTCTTCAAGGT+TGG + tig0014196:18393-18412 Msa1354040:CDS 50.0%
TGGCGTGAAGGGATTAAAGG+AGG - tig0014196:17011-17030 None:intergenic 50.0%
!! TGTTGGGTTGGAATAGGGCT+TGG + tig0014196:18224-18243 Msa1354040:CDS 50.0%
TGGGGACAAGTCTTCAAGGT+TGG + tig0014196:18393-18412 Msa1354040:CDS 50.0%
! ACAGTACAGTACCGAGGAGG+TGG - tig0014196:16868-16887 None:intergenic 55.0%
ATCCGTGACATGTCAGGGCA+GGG - tig0014196:16892-16911 None:intergenic 55.0%
TATCCGTGACATGTCAGGGC+AGG - tig0014196:16893-16912 None:intergenic 55.0%
TGGGTGGGGACAAGTCTTCA+AGG + tig0014196:18389-18408 Msa1354040:CDS 55.0%
! ACAGTACAGTACCGAGGAGG+TGG - tig0014196:16868-16887 None:intergenic 55.0%
ATCCGTGACATGTCAGGGCA+GGG - tig0014196:16892-16911 None:intergenic 55.0%
TATCCGTGACATGTCAGGGC+AGG - tig0014196:16893-16912 None:intergenic 55.0%
TGGGTGGGGACAAGTCTTCA+AGG + tig0014196:18389-18408 Msa1354040:CDS 55.0%
! GGCACAGTACAGTACCGAGG+AGG - tig0014196:16871-16890 None:intergenic 60.0%
CAGGGCACAGTACAGTACCG+AGG - tig0014196:16874-16893 None:intergenic 60.0%
TGCCCTGCCCTGACATGTCA+CGG + tig0014196:16887-16906 Msa1354040:five_prime_UTR 60.0%
! GGCACAGTACAGTACCGAGG+AGG - tig0014196:16871-16890 None:intergenic 60.0%
CAGGGCACAGTACAGTACCG+AGG - tig0014196:16874-16893 None:intergenic 60.0%
TGCCCTGCCCTGACATGTCA+CGG + tig0014196:16887-16906 Msa1354040:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0014196 gene 16852 18835 16852 ID=Msa1354040;Name=Msa1354040
tig0014196 mRNA 16852 18835 16852 ID=Msa1354040-mRNA-1;Parent=Msa1354040;Name=Msa1354040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=123|1|1|1|1|1|2|280|491
tig0014196 exon 16852 17049 16852 ID=Msa1354040-mRNA-1:exon:8917;Parent=Msa1354040-mRNA-1
tig0014196 exon 17155 18835 17155 ID=Msa1354040-mRNA-1:exon:8918;Parent=Msa1354040-mRNA-1
tig0014196 five_prime_UTR 16852 16974 16852 ID=Msa1354040-mRNA-1:five_prime_utr;Parent=Msa1354040-mRNA-1
tig0014196 CDS 16975 17049 16975 ID=Msa1354040-mRNA-1:cds;Parent=Msa1354040-mRNA-1
tig0014196 CDS 17155 18555 17155 ID=Msa1354040-mRNA-1:cds;Parent=Msa1354040-mRNA-1
tig0014196 three_prime_UTR 18556 18835 18556 ID=Msa1354040-mRNA-1:three_prime_utr;Parent=Msa1354040-mRNA-1
Gene Sequence

>Msa1354040

ATGACTTCTTCTCCTTCTTCTTCTTCCAAATCTCCTCCTTTAATCCCTTCACGCCATTCTCCACAATTCACACCAATTCAAGAGGAACATGAATTTGATGAATACACCAACAGTGAAAACAGAAGCCAAAGTAGAAGAACAACACCAACAAGTGCTTCAACTCCAAAGCACAATATCAATCATCATCATCCACCAACACCAATCAATATCAACAAAAACACAAAACCAAATCACAAGAAAAAACGTTCTGAAACTGAACTAGAAGATGGTTCTGTTTCATGCAACAAATGCAGACCACATTCTCGTGACAAAATCTTCATCCTTCCCTTTGATCATTCCAACAACAACAGCAGTAACAGCAAGTATTCATCTTTGTTGCAAAGTCCAAATGGGATTTTCAAATCCATTGTTTCAAAGCTAACAAGAAAAAGTCCAATGTCAGCATCAACAACAAACAACAATGAAGAACAATGGAAAATGGCAGTAGCAGAACTTTCTCACAAACTTGTTCATGCCACAAGAAAAAGAGATGAAGCTCTTCAAGAAGCTTCAAGGCTCATGAACTCAATGTCAGAGTTAGAGAAAAAGTTGAACAAGCTTGAAATTTATTGTCACACTTTGAAATCTGGTCTTGAAGAATGTAACAATATTAATACTGCTACTAATGTTGTTGGTTCTTCTAATGTTGTTGCTCAGAAGAATTTTCATCATCATGTTCAAGACAATGACAACGTTGTACAACATTTCTTGGTGGCTGTTTCTGAAGCAAGATCTTCAGTGAGACTTCTAAGTCGTTCTTTAACAATGCAACTTAGACACACAGGAAGCAAAGTGTATGAAAAAGTTTCTTTACTTTTACAACCTTATGATATAAAAATCTCTTTTTCAAAGAATCCAAGAAGTTTGCTTTTTTACTTGGAAGCACTTTTGAACAAGACATTTTTTGAGGATTTTGAGTCAATTGGGTTTCAAAAGAATGCTTGTAATAGGATATTGAACCCTATGGAAAGGTGTGAATCAAGTTTTGCTTCATTCAACATGATTCATGGGTTGACTTGGGATGAAGTTTTGAGCAAAGGGACAAGACATTTTAGTGAAGATTTTAGTAGATTTTGTGATAGAAAAATGAGTGAAATTGTTGCTATGTTGGGTTGGAATAGGGCTTGGTCTGAACCACTTTTGCAAGCTTTCTTTGTTGCTTCAAAGAGTGTTTGGATGGTTCATTTGTTGGCTAATTCAGTTCATCCAAGTTTGCCAATTTTTAGAGTTGATAAAGGAGTCAACTTTGATTCAGTTTACATGGAAGATATGGGTGGGGACAAGTCTTCAAGGTTGGTACCAAACATGGTTAGGATTATGGTTGCTCCTGGTTTTTATGTCTATGGTAGTGCTGTTAAATGTAAGGTTCTTTGCAGGTACTTGACCAATAACCTCAGCAACAACAAACAAGACAAAGGTTTAAACCCATCACCTTAA

Protein sequence

>Msa1354040

MTSSPSSSSKSPPLIPSRHSPQFTPIQEEHEFDEYTNSENRSQSRRTTPTSASTPKHNINHHHPPTPININKNTKPNHKKKRSETELEDGSVSCNKCRPHSRDKIFILPFDHSNNNSSNSKYSSLLQSPNGIFKSIVSKLTRKSPMSASTTNNNEEQWKMAVAELSHKLVHATRKRDEALQEASRLMNSMSELEKKLNKLEIYCHTLKSGLEECNNINTATNVVGSSNVVAQKNFHHHVQDNDNVVQHFLVAVSEARSSVRLLSRSLTMQLRHTGSKVYEKVSLLLQPYDIKISFSKNPRSLLFYLEALLNKTFFEDFESIGFQKNACNRILNPMERCESSFASFNMIHGLTWDEVLSKGTRHFSEDFSRFCDRKMSEIVAMLGWNRAWSEPLLQAFFVASKSVWMVHLLANSVHPSLPIFRVDKGVNFDSVYMEDMGGDKSSRLVPNMVRIMVAPGFYVYGSAVKCKVLCRYLTNNLSNNKQDKGLNPSP*