AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0155320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155320 MtrunA17_Chr1g0166011 97.849 186 4 0 1 186 1 186 3.10e-136 378
Msa0155320 MtrunA17_Chr1g0187961 73.077 182 35 4 1 182 11 178 9.09e-91 263
Msa0155320 MtrunA17_Chr1g0184801 64.583 192 60 3 1 184 12 203 5.87e-87 254
Msa0155320 MtrunA17_Chr7g0260621 62.371 194 62 4 1 184 11 203 1.78e-82 243
Msa0155320 MtrunA17_Chr6g0486121 43.668 229 83 7 1 183 15 243 4.70e-53 169
Msa0155320 MtrunA17_Chr1g0184791 44.828 232 69 9 1 183 13 234 1.46e-50 163
Msa0155320 MtrunA17_Chr2g0331411 48.705 193 66 5 17 182 128 314 2.09e-50 165
Msa0155320 MtrunA17_Chr1g0190711 43.162 234 76 8 1 183 15 242 3.52e-50 162
Msa0155320 MtrunA17_Chr1g0187921 43.694 222 82 7 1 183 8 225 1.31e-49 160
Msa0155320 MtrunA17_Chr5g0428141 54.667 150 44 4 58 183 187 336 1.41e-47 158
Msa0155320 MtrunA17_Chr8g0366881 54.605 152 43 4 58 183 186 337 2.46e-47 157
Msa0155320 MtrunA17_Chr5g0411501 36.861 274 82 8 1 183 51 324 3.06e-47 157
Msa0155320 MtrunA17_Chr7g0260641 55.034 149 41 5 60 183 92 239 7.78e-47 154
Msa0155320 MtrunA17_Chr8g0390281 39.922 258 79 10 1 182 24 281 4.59e-44 147
Msa0155320 MtrunA17_Chr4g0004181 45.304 181 78 5 3 183 8 167 5.14e-40 134
Msa0155320 MtrunA17_Chr2g0332141 55.914 93 32 2 91 174 8 100 7.72e-30 106
Msa0155320 MtrunA17_Chr8g0340731 30.233 258 107 7 1 185 10 267 1.05e-27 105
Msa0155320 MtrunA17_Chr2g0330951 31.200 250 107 6 2 186 13 262 1.28e-27 104
Msa0155320 MtrunA17_Chr1g0183251 33.146 178 58 4 66 183 81 257 4.08e-26 100
Msa0155320 MtrunA17_Chr4g0069561 38.095 126 77 1 55 179 59 184 2.20e-25 96.7
Msa0155320 MtrunA17_Chr7g0270851 41.748 103 56 2 83 184 62 161 1.52e-20 83.6
Msa0155320 MtrunA17_Chr1g0193861 41.667 108 59 3 71 175 64 170 2.41e-20 83.6
Msa0155320 MtrunA17_Chr3g0137601 31.496 127 67 3 68 179 89 210 2.89e-18 79.0
Msa0155320 MtrunA17_Chr1g0209181 37.313 134 69 4 53 175 39 168 5.30e-16 72.0
Msa0155320 MtrunA17_Chr4g0064131 31.148 122 63 3 68 176 93 206 9.59e-16 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0155320 AT1G04240.1 60.622 193 61 3 1 186 5 189 1.98e-79 234
Msa0155320 AT5G43700.1 61.376 189 54 4 1 185 11 184 1.02e-78 233
Msa0155320 AT1G04240.2 60.622 193 61 3 1 186 105 289 1.43e-78 236
Msa0155320 AT3G23030.1 59.563 183 52 3 1 182 9 170 9.81e-68 204
Msa0155320 AT3G23030.2 59.563 183 52 3 1 182 96 257 3.24e-67 206
Msa0155320 AT4G14560.1 60.335 179 50 3 1 179 7 164 1.18e-65 199
Msa0155320 AT3G04730.1 45.022 231 72 8 1 183 2 225 1.33e-54 173
Msa0155320 AT4G14550.2 44.344 221 81 6 1 183 1 217 3.67e-53 169
Msa0155320 AT4G14550.1 43.891 221 82 6 1 183 1 217 2.83e-52 167
Msa0155320 AT1G04250.1 46.226 212 85 6 1 183 7 218 4.96e-52 166
Msa0155320 AT4G29080.1 38.996 259 80 6 1 183 38 294 2.39e-51 167
Msa0155320 AT3G23050.1 43.860 228 81 7 1 183 6 231 2.14e-49 160
Msa0155320 AT2G22670.5 39.313 262 80 7 1 183 47 308 3.72e-48 159
Msa0155320 AT2G22670.2 39.313 262 80 7 1 183 47 308 3.72e-48 159
Msa0155320 AT2G22670.3 38.868 265 83 7 1 186 47 311 1.03e-47 158
Msa0155320 AT2G22670.1 38.868 265 83 7 1 186 47 311 1.03e-47 158
Msa0155320 AT2G22670.4 38.868 265 83 7 1 186 64 328 1.31e-47 158
Msa0155320 AT3G15540.1 46.486 185 92 4 3 183 8 189 1.72e-44 146
Msa0155320 AT5G65670.2 54.110 146 41 4 64 183 180 325 5.14e-44 149
Msa0155320 AT5G65670.1 54.110 146 41 4 64 183 180 325 5.55e-44 149
Msa0155320 AT1G52830.1 44.865 185 95 5 1 183 6 185 3.06e-41 137
Msa0155320 AT1G15580.1 45.304 181 70 6 3 181 10 163 3.61e-41 137
Msa0155320 AT4G14550.3 40.201 199 77 6 1 161 1 195 2.30e-39 133
Msa0155320 AT3G23050.2 40.097 207 77 7 1 162 6 210 4.65e-36 125
Msa0155320 AT2G33310.3 37.705 183 71 5 42 184 53 232 1.19e-30 112
Msa0155320 AT2G33310.1 37.705 183 71 5 42 184 53 232 1.19e-30 112
Msa0155320 AT3G16500.1 31.878 229 105 7 4 184 36 261 6.35e-30 111
Msa0155320 AT2G33310.2 37.572 173 68 4 52 184 61 233 8.66e-30 110
Msa0155320 AT3G16500.2 31.718 227 106 7 4 184 36 259 1.09e-29 110
Msa0155320 AT1G04550.2 39.080 174 62 5 53 183 52 224 3.25e-29 108
Msa0155320 AT4G28640.3 38.182 165 64 5 57 183 78 242 2.70e-27 103
Msa0155320 AT4G28640.1 38.037 163 63 5 57 181 78 240 5.44e-27 102
Msa0155320 AT4G28640.2 38.037 163 63 5 57 181 78 240 3.16e-26 102
Msa0155320 AT3G17600.1 37.838 148 71 5 36 175 20 154 1.56e-25 96.7
Msa0155320 AT5G25890.1 34.197 193 89 7 2 183 3 168 7.16e-25 95.5
Msa0155320 AT4G14550.4 38.065 155 66 5 1 129 1 151 1.71e-24 94.7
Msa0155320 AT1G04100.1 37.952 166 52 4 69 183 95 260 3.32e-24 95.9
Msa0155320 AT1G51950.1 30.493 223 99 6 2 178 38 250 1.19e-23 94.7
Msa0155320 AT3G62100.1 47.191 89 47 0 87 175 80 168 1.42e-22 89.4
Msa0155320 AT2G46990.1 45.055 91 50 0 87 177 82 172 1.43e-22 89.7
Msa0155320 AT3G23050.3 38.415 164 66 6 1 131 6 167 3.16e-22 88.6
Msa0155320 AT2G46990.2 47.368 76 40 0 87 162 82 157 2.19e-17 75.5
Msa0155320 AT3G62100.2 47.368 76 40 0 87 162 80 155 6.02e-17 74.3
Msa0155320 AT4G32280.2 40.698 86 46 2 90 175 118 198 4.81e-15 70.5
Msa0155320 AT4G32280.1 40.698 86 46 2 90 175 160 240 1.58e-14 69.7
Msa0155320 AT1G80390.1 35.115 131 55 4 2 125 15 122 3.84e-14 66.2
Msa0155320 AT1G15050.2 39.326 89 53 1 91 179 62 149 8.07e-12 60.8
Msa0155320 AT1G15050.1 39.326 89 53 1 91 179 94 181 1.37e-11 60.8
Msa0155320 AT2G46530.2 37.363 91 51 2 92 182 406 490 7.65e-11 60.5
Msa0155320 AT2G46530.1 37.363 91 51 2 92 182 493 577 8.04e-11 60.5
Msa0155320 AT2G46530.3 37.363 91 51 2 92 182 514 598 9.00e-11 60.5

Find 63 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCAATTGCTGGTGCTAA+TGG 0.234539 1_4:+20559247 Msa0155320:three_prime_UTR
TTCTGAAAGAGAGGGTTATA+AGG 0.253325 1_4:+20558389 Msa0155320:CDS
AGAATCTGTTTCAATTTCTA+AGG 0.274640 1_4:+20557583 Msa0155320:CDS
TCTAGAGCTTTGAGAAGTTC+TGG 0.300281 1_4:-20558027 None:intergenic
GGCACAGAAGCTAGAGGTTT+GGG 0.319290 1_4:+20559145 Msa0155320:CDS
AAAGTCAATCTTTCAATTGC+TGG 0.327616 1_4:+20559238 Msa0155320:three_prime_UTR
CCACCATGCCAATCTTGATT+TGG 0.337114 1_4:+20559291 Msa0155320:intron
AGTCAATCTTTCTAAGATAA+GGG 0.338441 1_4:-20557984 None:intergenic
AAGATTGACTTGAGGATCTA+TGG 0.344542 1_4:+20557997 Msa0155320:CDS
GGCCACCAATTAGGTCTTAC+AGG 0.362405 1_4:+20557899 Msa0155320:CDS
CAAGGCAACTGAGCTTAGAT+TGG 0.382816 1_4:+20557472 Msa0155320:CDS
TAGTAGGGTGGCCACCAATT+AGG 0.390633 1_4:+20557890 Msa0155320:CDS
CATAAGGAAGATGGAATTCA+AGG 0.418555 1_4:+20557454 Msa0155320:exon
AAGTCAATCTTTCTAAGATA+AGG 0.419964 1_4:-20557985 None:intergenic
AGGCACAGAAGCTAGAGGTT+TGG 0.423043 1_4:+20559144 Msa0155320:CDS
GAAGCTAGAGGTTTGGGTTG+TGG 0.426186 1_4:+20559151 Msa0155320:CDS
TTGATTAAAACTTACTTGGC+AGG 0.428702 1_4:-20557650 None:intergenic
GTCACCATCCTTGTCTTCAT+AGG 0.428945 1_4:-20558430 None:intergenic
TATTGCAGGGCAAAGATAGT+AGG 0.441299 1_4:+20557874 Msa0155320:intron
CCATCCTTGTCTTCATAGGT+TGG 0.460968 1_4:-20558426 None:intergenic
AAGGCAACTGAGCTTAGATT+GGG 0.478858 1_4:+20557473 Msa0155320:CDS
ACAGATTCTTCAGAAGTTTG+AGG 0.488351 1_4:-20557569 None:intergenic
TCTCTTAACATCTCAAAAGA+AGG 0.500019 1_4:+20557352 Msa0155320:five_prime_UTR
TCTCCCTTCCAAATCAAGAT+TGG 0.500719 1_4:-20559299 None:intergenic
GAGCTTAGATTGGGATTACC+AGG 0.513920 1_4:+20557482 Msa0155320:CDS
ATCTTGATTTGGAAGGGAGA+TGG 0.516791 1_4:+20559302 Msa0155320:three_prime_UTR
AATTAGAATTAGAAGAGTCA+TGG 0.518986 1_4:+20559484 Msa0155320:three_prime_UTR
TTCCTGTAAGACCTAATTGG+TGG 0.520095 1_4:-20557901 None:intergenic
TCTGAAAGAGAGGGTTATAA+GGG 0.521294 1_4:+20558390 Msa0155320:CDS
CATGCCAATCTTGATTTGGA+AGG 0.521448 1_4:+20559295 Msa0155320:intron
ATTACCAGGGACAGATGAAA+AGG 0.535679 1_4:+20557496 Msa0155320:CDS
TAAAACTTACTTGGCAGGAG+GGG 0.540132 1_4:-20557645 None:intergenic
GATGGTGACTGGATGCTAGT+TGG 0.551132 1_4:+20558444 Msa0155320:CDS
AGGTGAGTATTCTGAAAGAG+AGG 0.559449 1_4:+20558380 Msa0155320:intron
TGTAACAATTGTGTGAAAGT+AGG 0.559942 1_4:-20557322 None:intergenic
TGCTAGTTGGAGATGTTCCA+TGG 0.562736 1_4:+20558457 Msa0155320:CDS
ATGCCAATCTTGATTTGGAA+GGG 0.567262 1_4:+20559296 Msa0155320:intron
GTCAATCTTTCTAAGATAAG+GGG 0.570265 1_4:-20557983 None:intergenic
ACCTATGGTCAATTTGAACA+TGG 0.570995 1_4:-20558052 None:intergenic
ATTGCAGGGCAAAGATAGTA+GGG 0.580888 1_4:+20557875 Msa0155320:intron
TTGCAAGATGCTGAAGTTGG+TGG 0.588995 1_4:+20557931 Msa0155320:CDS
ATCTTAGAAAGATTGACTTG+AGG 0.591443 1_4:+20557989 Msa0155320:CDS
ACCATGTTCAAATTGACCAT+AGG 0.594986 1_4:+20558051 Msa0155320:CDS
ACTTTGCAAGATGCTGAAGT+TGG 0.595544 1_4:+20557928 Msa0155320:CDS
ATTAAAACTTACTTGGCAGG+AGG 0.597037 1_4:-20557647 None:intergenic
TATGTGAAAGTGAGCATGGA+TGG 0.607005 1_4:+20557958 Msa0155320:CDS
ATGAAGACAAGGATGGTGAC+TGG 0.608145 1_4:+20558433 Msa0155320:CDS
TTAAAACTTACTTGGCAGGA+GGG 0.608705 1_4:-20557646 None:intergenic
TGCAAGATGCTGAAGTTGGT+GGG 0.610809 1_4:+20557932 Msa0155320:CDS
GGATTGAGAACTTACTCCCA+TGG 0.615696 1_4:-20558474 None:intergenic
GGTGAGTATTCTGAAAGAGA+GGG 0.617046 1_4:+20558381 Msa0155320:intron
GCTAGTTGGAGATGTTCCAT+GGG 0.627077 1_4:+20558458 Msa0155320:CDS
GATCTATGTGAAAGTGAGCA+TGG 0.629421 1_4:+20557954 Msa0155320:CDS
AAGGAGATGAAAACAATACA+TGG 0.630474 1_4:+20557515 Msa0155320:CDS
AAAAGACTAAGAATCATGAA+AGG 0.643848 1_4:+20559124 Msa0155320:CDS
TGCACCAACCTATGAAGACA+AGG 0.644295 1_4:+20558422 Msa0155320:CDS
TTCAAATGATGATCAGCATG+TGG 0.651916 1_4:+20557607 Msa0155320:CDS
AGCTTAGATTGGGATTACCA+GGG 0.671776 1_4:+20557483 Msa0155320:CDS
GTGTGAAAGTAGGAAATGCA+AGG 0.671895 1_4:-20557312 None:intergenic
CCAACCTATGAAGACAAGGA+TGG 0.673846 1_4:+20558426 Msa0155320:CDS
ATGAAAGGCACAGAAGCTAG+AGG 0.675055 1_4:+20559139 Msa0155320:CDS
ATTGACTTGAGGATCTATGG+AGG 0.689707 1_4:+20558000 Msa0155320:CDS
GCAGGGCAAAGATAGTAGGG+TGG 0.730499 1_4:+20557878 Msa0155320:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTGTAATTGAATTAG+AGG + chr1_4:20557425-20557444 Msa0155320:five_prime_UTR 15.0%
!!! TATTTTGTAATTGAATTAGA+GGG + chr1_4:20557426-20557445 Msa0155320:five_prime_UTR 15.0%
!!! TTAAATTTTGTTTTTTGCTT+TGG + chr1_4:20558085-20558104 Msa0155320:intron 15.0%
!!! AGTTTGATTTTATTTTACTT+AGG + chr1_4:20558763-20558782 Msa0155320:intron 15.0%
!!! TAATTAGTTTTTAGTCAAAT+AGG + chr1_4:20558949-20558968 Msa0155320:intron 15.0%
!!! ATATTTTGTAATTGAATTAG+AGG + chr1_4:20557425-20557444 Msa0155320:five_prime_UTR 15.0%
!!! TATTTTGTAATTGAATTAGA+GGG + chr1_4:20557426-20557445 Msa0155320:five_prime_UTR 15.0%
!!! TTAAATTTTGTTTTTTGCTT+TGG + chr1_4:20558085-20558104 Msa0155320:intron 15.0%
!!! AGTTTGATTTTATTTTACTT+AGG + chr1_4:20558763-20558782 Msa0155320:intron 15.0%
!!! TAATTAGTTTTTAGTCAAAT+AGG + chr1_4:20558949-20558968 Msa0155320:intron 15.0%
!!! TATAGTCACTATAAAGTTTT+AGG - chr1_4:20557406-20557425 None:intergenic 20.0%
!!! GATTCAAGAATTTTTTTGTT+TGG + chr1_4:20557813-20557832 Msa0155320:intron 20.0%
!! TTAATCTTATGTTAAGATTG+CGG + chr1_4:20558231-20558250 Msa0155320:intron 20.0%
!!! GAAATTTTACTTTGTTTTTC+AGG + chr1_4:20558360-20558379 Msa0155320:intron 20.0%
!! TAAGAGAAAAACAATCAAAA+TGG - chr1_4:20559041-20559060 None:intergenic 20.0%
!! ATGTTATTAAAAATGTTCAG+TGG - chr1_4:20559416-20559435 None:intergenic 20.0%
!!! TATAGTCACTATAAAGTTTT+AGG - chr1_4:20557406-20557425 None:intergenic 20.0%
!!! GATTCAAGAATTTTTTTGTT+TGG + chr1_4:20557813-20557832 Msa0155320:intron 20.0%
!! TTAATCTTATGTTAAGATTG+CGG + chr1_4:20558231-20558250 Msa0155320:intron 20.0%
!!! GAAATTTTACTTTGTTTTTC+AGG + chr1_4:20558360-20558379 Msa0155320:intron 20.0%
!! TAAGAGAAAAACAATCAAAA+TGG - chr1_4:20559041-20559060 None:intergenic 20.0%
!! ATGTTATTAAAAATGTTCAG+TGG - chr1_4:20559416-20559435 None:intergenic 20.0%
! AGAATCTGTTTCAATTTCTA+AGG + chr1_4:20557583-20557602 Msa0155320:CDS 25.0%
! CTTCTTGATTAAAACTTACT+TGG - chr1_4:20557657-20557676 None:intergenic 25.0%
!!! CAAGTAAGTTTTAATCAAGA+AGG + chr1_4:20557655-20557674 Msa0155320:intron 25.0%
! AAACTTTCTCTTGTAAAAAG+TGG + chr1_4:20557682-20557701 Msa0155320:intron 25.0%
! TAATTTGATGTTGATATTGC+AGG + chr1_4:20557860-20557879 Msa0155320:intron 25.0%
! AATTTGATGTTGATATTGCA+GGG + chr1_4:20557861-20557880 Msa0155320:intron 25.0%
!!! AGTCAATCTTTCTAAGATAA+GGG - chr1_4:20557987-20558006 None:intergenic 25.0%
!!! AAGTCAATCTTTCTAAGATA+AGG - chr1_4:20557988-20558007 None:intergenic 25.0%
! TTTAATCTCTATCTTACCTA+TGG - chr1_4:20558070-20558089 None:intergenic 25.0%
!!! GCTTATTTGAGTTTATCTTT+TGG + chr1_4:20558608-20558627 Msa0155320:intron 25.0%
! AAAAGACTAAGAATCATGAA+AGG + chr1_4:20559124-20559143 Msa0155320:CDS 25.0%
!! TTTTTCTTGCATTTAGTCAT+AGG - chr1_4:20559201-20559220 None:intergenic 25.0%
!! AAATGCAAGAAAAAGAGTTT+TGG + chr1_4:20559207-20559226 Msa0155320:three_prime_UTR 25.0%
!! AAACTTTGTCAACATGTTTT+TGG + chr1_4:20559341-20559360 Msa0155320:three_prime_UTR 25.0%
! AATTAGAATTAGAAGAGTCA+TGG + chr1_4:20559484-20559503 Msa0155320:three_prime_UTR 25.0%
!!! ATACGTAGTTATTTTTTGAC+AGG + chr1_4:20559540-20559559 Msa0155320:three_prime_UTR 25.0%
! AGAATCTGTTTCAATTTCTA+AGG + chr1_4:20557583-20557602 Msa0155320:CDS 25.0%
! CTTCTTGATTAAAACTTACT+TGG - chr1_4:20557657-20557676 None:intergenic 25.0%
!!! CAAGTAAGTTTTAATCAAGA+AGG + chr1_4:20557655-20557674 Msa0155320:intron 25.0%
! AAACTTTCTCTTGTAAAAAG+TGG + chr1_4:20557682-20557701 Msa0155320:intron 25.0%
! TAATTTGATGTTGATATTGC+AGG + chr1_4:20557860-20557879 Msa0155320:intron 25.0%
! AATTTGATGTTGATATTGCA+GGG + chr1_4:20557861-20557880 Msa0155320:intron 25.0%
!!! AGTCAATCTTTCTAAGATAA+GGG - chr1_4:20557987-20558006 None:intergenic 25.0%
!!! AAGTCAATCTTTCTAAGATA+AGG - chr1_4:20557988-20558007 None:intergenic 25.0%
! TTTAATCTCTATCTTACCTA+TGG - chr1_4:20558070-20558089 None:intergenic 25.0%
!!! GCTTATTTGAGTTTATCTTT+TGG + chr1_4:20558608-20558627 Msa0155320:intron 25.0%
! AAAAGACTAAGAATCATGAA+AGG + chr1_4:20559124-20559143 Msa0155320:CDS 25.0%
!! TTTTTCTTGCATTTAGTCAT+AGG - chr1_4:20559201-20559220 None:intergenic 25.0%
!! AAATGCAAGAAAAAGAGTTT+TGG + chr1_4:20559207-20559226 Msa0155320:three_prime_UTR 25.0%
!! AAACTTTGTCAACATGTTTT+TGG + chr1_4:20559341-20559360 Msa0155320:three_prime_UTR 25.0%
! AATTAGAATTAGAAGAGTCA+TGG + chr1_4:20559484-20559503 Msa0155320:three_prime_UTR 25.0%
!!! ATACGTAGTTATTTTTTGAC+AGG + chr1_4:20559540-20559559 Msa0155320:three_prime_UTR 25.0%
! AATGCAAGGTTGTGTTTTAT+AGG - chr1_4:20557301-20557320 None:intergenic 30.0%
TGTAACAATTGTGTGAAAGT+AGG - chr1_4:20557325-20557344 None:intergenic 30.0%
!!! TTCTTTTGAGATGTTAAGAG+AGG - chr1_4:20557353-20557372 None:intergenic 30.0%
TCTCTTAACATCTCAAAAGA+AGG + chr1_4:20557352-20557371 Msa0155320:five_prime_UTR 30.0%
AAGGAGATGAAAACAATACA+TGG + chr1_4:20557515-20557534 Msa0155320:CDS 30.0%
TTGATTAAAACTTACTTGGC+AGG - chr1_4:20557653-20557672 None:intergenic 30.0%
TACTATCATGCAACTGTATA+AGG - chr1_4:20557709-20557728 None:intergenic 30.0%
TATACAGTTGCATGATAGTA+CGG + chr1_4:20557709-20557728 Msa0155320:intron 30.0%
GTGCTGCAGAATTTATTTAA+CGG + chr1_4:20557731-20557750 Msa0155320:intron 30.0%
! GAATCTTTTATCTCATCAAG+AGG - chr1_4:20557798-20557817 None:intergenic 30.0%
! TTTTTCCTGTAAGACCTAAT+TGG - chr1_4:20557907-20557926 None:intergenic 30.0%
!! GTCAATCTTTCTAAGATAAG+GGG - chr1_4:20557986-20558005 None:intergenic 30.0%
!! ATCTTAGAAAGATTGACTTG+AGG + chr1_4:20557989-20558008 Msa0155320:CDS 30.0%
GAATGATGTAGTCTCAATTA+TGG + chr1_4:20558173-20558192 Msa0155320:intron 30.0%
AGAATAAAGCAAACACACAA+GGG - chr1_4:20558498-20558517 None:intergenic 30.0%
AAGAATAAAGCAAACACACA+AGG - chr1_4:20558499-20558518 None:intergenic 30.0%
TCAAATAAGCTAATCCAAAC+AGG - chr1_4:20558598-20558617 None:intergenic 30.0%
GATAAGCTGAAAACAACTTA+TGG - chr1_4:20558689-20558708 None:intergenic 30.0%
GTAATTTAATAGTCTGCGAT+CGG + chr1_4:20558987-20559006 Msa0155320:intron 30.0%
!! ATCCTCTAGAACTAATGTTA+TGG - chr1_4:20559018-20559037 None:intergenic 30.0%
!!! GAAAAAGAGTTTTGGTGTTT+AGG + chr1_4:20559215-20559234 Msa0155320:three_prime_UTR 30.0%
AAAGTCAATCTTTCAATTGC+TGG + chr1_4:20559238-20559257 Msa0155320:three_prime_UTR 30.0%
!!! TGCTAATGGATTTTGAATCA+AGG + chr1_4:20559261-20559280 Msa0155320:intron 30.0%
!!! TGGTTATTTTAGCATCTTGA+TGG + chr1_4:20559361-20559380 Msa0155320:three_prime_UTR 30.0%
!!! GGTTATTTTAGCATCTTGAT+GGG + chr1_4:20559362-20559381 Msa0155320:three_prime_UTR 30.0%
! AATGCAAGGTTGTGTTTTAT+AGG - chr1_4:20557301-20557320 None:intergenic 30.0%
TGTAACAATTGTGTGAAAGT+AGG - chr1_4:20557325-20557344 None:intergenic 30.0%
!!! TTCTTTTGAGATGTTAAGAG+AGG - chr1_4:20557353-20557372 None:intergenic 30.0%
TCTCTTAACATCTCAAAAGA+AGG + chr1_4:20557352-20557371 Msa0155320:five_prime_UTR 30.0%
AAGGAGATGAAAACAATACA+TGG + chr1_4:20557515-20557534 Msa0155320:CDS 30.0%
TTGATTAAAACTTACTTGGC+AGG - chr1_4:20557653-20557672 None:intergenic 30.0%
TACTATCATGCAACTGTATA+AGG - chr1_4:20557709-20557728 None:intergenic 30.0%
TATACAGTTGCATGATAGTA+CGG + chr1_4:20557709-20557728 Msa0155320:intron 30.0%
GTGCTGCAGAATTTATTTAA+CGG + chr1_4:20557731-20557750 Msa0155320:intron 30.0%
! GAATCTTTTATCTCATCAAG+AGG - chr1_4:20557798-20557817 None:intergenic 30.0%
! TTTTTCCTGTAAGACCTAAT+TGG - chr1_4:20557907-20557926 None:intergenic 30.0%
!! GTCAATCTTTCTAAGATAAG+GGG - chr1_4:20557986-20558005 None:intergenic 30.0%
!! ATCTTAGAAAGATTGACTTG+AGG + chr1_4:20557989-20558008 Msa0155320:CDS 30.0%
GAATGATGTAGTCTCAATTA+TGG + chr1_4:20558173-20558192 Msa0155320:intron 30.0%
AGAATAAAGCAAACACACAA+GGG - chr1_4:20558498-20558517 None:intergenic 30.0%
AAGAATAAAGCAAACACACA+AGG - chr1_4:20558499-20558518 None:intergenic 30.0%
TCAAATAAGCTAATCCAAAC+AGG - chr1_4:20558598-20558617 None:intergenic 30.0%
GATAAGCTGAAAACAACTTA+TGG - chr1_4:20558689-20558708 None:intergenic 30.0%
GTAATTTAATAGTCTGCGAT+CGG + chr1_4:20558987-20559006 Msa0155320:intron 30.0%
!! ATCCTCTAGAACTAATGTTA+TGG - chr1_4:20559018-20559037 None:intergenic 30.0%
!!! GAAAAAGAGTTTTGGTGTTT+AGG + chr1_4:20559215-20559234 Msa0155320:three_prime_UTR 30.0%
AAAGTCAATCTTTCAATTGC+TGG + chr1_4:20559238-20559257 Msa0155320:three_prime_UTR 30.0%
!!! TGCTAATGGATTTTGAATCA+AGG + chr1_4:20559261-20559280 Msa0155320:intron 30.0%
!!! TGGTTATTTTAGCATCTTGA+TGG + chr1_4:20559361-20559380 Msa0155320:three_prime_UTR 30.0%
!!! GGTTATTTTAGCATCTTGAT+GGG + chr1_4:20559362-20559381 Msa0155320:three_prime_UTR 30.0%
! GAATTAGAGGGTTTTGCATA+AGG + chr1_4:20557438-20557457 Msa0155320:five_prime_UTR 35.0%
CATAAGGAAGATGGAATTCA+AGG + chr1_4:20557454-20557473 Msa0155320:exon 35.0%
ACAGATTCTTCAGAAGTTTG+AGG - chr1_4:20557572-20557591 None:intergenic 35.0%
TTCAAATGATGATCAGCATG+TGG + chr1_4:20557607-20557626 Msa0155320:CDS 35.0%
TTAAAACTTACTTGGCAGGA+GGG - chr1_4:20557649-20557668 None:intergenic 35.0%
ATTAAAACTTACTTGGCAGG+AGG - chr1_4:20557650-20557669 None:intergenic 35.0%
!! AAGATTGACTTGAGGATCTA+TGG + chr1_4:20557997-20558016 Msa0155320:CDS 35.0%
ACCATGTTCAAATTGACCAT+AGG + chr1_4:20558051-20558070 Msa0155320:CDS 35.0%
ACCTATGGTCAATTTGAACA+TGG - chr1_4:20558055-20558074 None:intergenic 35.0%
TTTAAATTGCAATCGCGTCT+AGG + chr1_4:20558115-20558134 Msa0155320:intron 35.0%
TTAAATTGCAATCGCGTCTA+GGG + chr1_4:20558116-20558135 Msa0155320:intron 35.0%
! TTCTGAAAGAGAGGGTTATA+AGG + chr1_4:20558389-20558408 Msa0155320:CDS 35.0%
TCTGAAAGAGAGGGTTATAA+GGG + chr1_4:20558390-20558409 Msa0155320:CDS 35.0%
GTAGCAGATAGTTAGATTGT+TGG + chr1_4:20558572-20558591 Msa0155320:intron 35.0%
! AGCCTCTTTGAGAAAGTTTA+GGG + chr1_4:20558645-20558664 Msa0155320:intron 35.0%
TTCCCTAAACTTTCTCAAAG+AGG - chr1_4:20558650-20558669 None:intergenic 35.0%
! TGTTTTCAGCTTATCCTCAT+CGG + chr1_4:20558694-20558713 Msa0155320:intron 35.0%
!! TCCATGATGGTTGATGAAAA+TGG + chr1_4:20558720-20558739 Msa0155320:intron 35.0%
!! CACCATAACATTAGTTCTAG+AGG + chr1_4:20559013-20559032 Msa0155320:intron 35.0%
!! CATGATTCTTAGTCTTTTGC+AGG - chr1_4:20559122-20559141 None:intergenic 35.0%
!! ATGCCAATCTTGATTTGGAA+GGG + chr1_4:20559296-20559315 Msa0155320:intron 35.0%
! GAATTAGAGGGTTTTGCATA+AGG + chr1_4:20557438-20557457 Msa0155320:five_prime_UTR 35.0%
CATAAGGAAGATGGAATTCA+AGG + chr1_4:20557454-20557473 Msa0155320:exon 35.0%
ACAGATTCTTCAGAAGTTTG+AGG - chr1_4:20557572-20557591 None:intergenic 35.0%
TTCAAATGATGATCAGCATG+TGG + chr1_4:20557607-20557626 Msa0155320:CDS 35.0%
TTAAAACTTACTTGGCAGGA+GGG - chr1_4:20557649-20557668 None:intergenic 35.0%
ATTAAAACTTACTTGGCAGG+AGG - chr1_4:20557650-20557669 None:intergenic 35.0%
!! AAGATTGACTTGAGGATCTA+TGG + chr1_4:20557997-20558016 Msa0155320:CDS 35.0%
ACCATGTTCAAATTGACCAT+AGG + chr1_4:20558051-20558070 Msa0155320:CDS 35.0%
ACCTATGGTCAATTTGAACA+TGG - chr1_4:20558055-20558074 None:intergenic 35.0%
TTTAAATTGCAATCGCGTCT+AGG + chr1_4:20558115-20558134 Msa0155320:intron 35.0%
TTAAATTGCAATCGCGTCTA+GGG + chr1_4:20558116-20558135 Msa0155320:intron 35.0%
! TTCTGAAAGAGAGGGTTATA+AGG + chr1_4:20558389-20558408 Msa0155320:CDS 35.0%
TCTGAAAGAGAGGGTTATAA+GGG + chr1_4:20558390-20558409 Msa0155320:CDS 35.0%
GTAGCAGATAGTTAGATTGT+TGG + chr1_4:20558572-20558591 Msa0155320:intron 35.0%
! AGCCTCTTTGAGAAAGTTTA+GGG + chr1_4:20558645-20558664 Msa0155320:intron 35.0%
TTCCCTAAACTTTCTCAAAG+AGG - chr1_4:20558650-20558669 None:intergenic 35.0%
! TGTTTTCAGCTTATCCTCAT+CGG + chr1_4:20558694-20558713 Msa0155320:intron 35.0%
!! TCCATGATGGTTGATGAAAA+TGG + chr1_4:20558720-20558739 Msa0155320:intron 35.0%
!! CACCATAACATTAGTTCTAG+AGG + chr1_4:20559013-20559032 Msa0155320:intron 35.0%
!! CATGATTCTTAGTCTTTTGC+AGG - chr1_4:20559122-20559141 None:intergenic 35.0%
!! ATGCCAATCTTGATTTGGAA+GGG + chr1_4:20559296-20559315 Msa0155320:intron 35.0%
GTGTGAAAGTAGGAAATGCA+AGG - chr1_4:20557315-20557334 None:intergenic 40.0%
! AGGGTTTTGCATAAGGAAGA+TGG + chr1_4:20557445-20557464 Msa0155320:exon 40.0%
AAGGCAACTGAGCTTAGATT+GGG + chr1_4:20557473-20557492 Msa0155320:CDS 40.0%
AGCTTAGATTGGGATTACCA+GGG + chr1_4:20557483-20557502 Msa0155320:CDS 40.0%
ATTACCAGGGACAGATGAAA+AGG + chr1_4:20557496-20557515 Msa0155320:CDS 40.0%
TAAAACTTACTTGGCAGGAG+GGG - chr1_4:20557648-20557667 None:intergenic 40.0%
ATACGTACTGCAACTGTTCA+GGG + chr1_4:20557771-20557790 Msa0155320:intron 40.0%
TATTGCAGGGCAAAGATAGT+AGG + chr1_4:20557874-20557893 Msa0155320:intron 40.0%
ATTGCAGGGCAAAGATAGTA+GGG + chr1_4:20557875-20557894 Msa0155320:intron 40.0%
TTCCTGTAAGACCTAATTGG+TGG - chr1_4:20557904-20557923 None:intergenic 40.0%
ACTTTGCAAGATGCTGAAGT+TGG + chr1_4:20557928-20557947 Msa0155320:CDS 40.0%
GATCTATGTGAAAGTGAGCA+TGG + chr1_4:20557954-20557973 Msa0155320:CDS 40.0%
TATGTGAAAGTGAGCATGGA+TGG + chr1_4:20557958-20557977 Msa0155320:CDS 40.0%
!! ATTGACTTGAGGATCTATGG+AGG + chr1_4:20558000-20558019 Msa0155320:CDS 40.0%
!! TCTAGAGCTTTGAGAAGTTC+TGG - chr1_4:20558030-20558049 None:intergenic 40.0%
! AGGTGAGTATTCTGAAAGAG+AGG + chr1_4:20558380-20558399 Msa0155320:intron 40.0%
! GGTGAGTATTCTGAAAGAGA+GGG + chr1_4:20558381-20558400 Msa0155320:intron 40.0%
!! GAACTTAGATCCTCTGAAGT+TGG + chr1_4:20558542-20558561 Msa0155320:intron 40.0%
!! ATCCTCTGAAGTTGGCTTTA+TGG + chr1_4:20558550-20558569 Msa0155320:intron 40.0%
TACCATAAAGCCAACTTCAG+AGG - chr1_4:20558555-20558574 None:intergenic 40.0%
! AGTTAGATTGTTGGCCTGTT+TGG + chr1_4:20558581-20558600 Msa0155320:intron 40.0%
! GAGCCTCTTTGAGAAAGTTT+AGG + chr1_4:20558644-20558663 Msa0155320:intron 40.0%
!! GCCATTTTCATCAACCATCA+TGG - chr1_4:20558724-20558743 None:intergenic 40.0%
!! TTGGTCTGGTAGTATTGACT+TGG + chr1_4:20558817-20558836 Msa0155320:intron 40.0%
!! TGGTCTGGTAGTATTGACTT+GGG + chr1_4:20558818-20558837 Msa0155320:intron 40.0%
TAATTGAACCTGAGACCTTG+AGG - chr1_4:20558862-20558881 None:intergenic 40.0%
! GTGGGCTAATTTAGCTTCTT+CGG + chr1_4:20558900-20558919 Msa0155320:intron 40.0%
! CTTTCAATTGCTGGTGCTAA+TGG + chr1_4:20559247-20559266 Msa0155320:three_prime_UTR 40.0%
CTTCCAAATCAAGATTGGCA+TGG - chr1_4:20559297-20559316 None:intergenic 40.0%
!! CATGCCAATCTTGATTTGGA+AGG + chr1_4:20559295-20559314 Msa0155320:intron 40.0%
TCTCCCTTCCAAATCAAGAT+TGG - chr1_4:20559302-20559321 None:intergenic 40.0%
!! ATCTTGATTTGGAAGGGAGA+TGG + chr1_4:20559302-20559321 Msa0155320:three_prime_UTR 40.0%
GTGTGAAAGTAGGAAATGCA+AGG - chr1_4:20557315-20557334 None:intergenic 40.0%
! AGGGTTTTGCATAAGGAAGA+TGG + chr1_4:20557445-20557464 Msa0155320:exon 40.0%
AAGGCAACTGAGCTTAGATT+GGG + chr1_4:20557473-20557492 Msa0155320:CDS 40.0%
AGCTTAGATTGGGATTACCA+GGG + chr1_4:20557483-20557502 Msa0155320:CDS 40.0%
ATTACCAGGGACAGATGAAA+AGG + chr1_4:20557496-20557515 Msa0155320:CDS 40.0%
TAAAACTTACTTGGCAGGAG+GGG - chr1_4:20557648-20557667 None:intergenic 40.0%
ATACGTACTGCAACTGTTCA+GGG + chr1_4:20557771-20557790 Msa0155320:intron 40.0%
TATTGCAGGGCAAAGATAGT+AGG + chr1_4:20557874-20557893 Msa0155320:intron 40.0%
ATTGCAGGGCAAAGATAGTA+GGG + chr1_4:20557875-20557894 Msa0155320:intron 40.0%
TTCCTGTAAGACCTAATTGG+TGG - chr1_4:20557904-20557923 None:intergenic 40.0%
ACTTTGCAAGATGCTGAAGT+TGG + chr1_4:20557928-20557947 Msa0155320:CDS 40.0%
GATCTATGTGAAAGTGAGCA+TGG + chr1_4:20557954-20557973 Msa0155320:CDS 40.0%
TATGTGAAAGTGAGCATGGA+TGG + chr1_4:20557958-20557977 Msa0155320:CDS 40.0%
!! ATTGACTTGAGGATCTATGG+AGG + chr1_4:20558000-20558019 Msa0155320:CDS 40.0%
!! TCTAGAGCTTTGAGAAGTTC+TGG - chr1_4:20558030-20558049 None:intergenic 40.0%
! AGGTGAGTATTCTGAAAGAG+AGG + chr1_4:20558380-20558399 Msa0155320:intron 40.0%
! GGTGAGTATTCTGAAAGAGA+GGG + chr1_4:20558381-20558400 Msa0155320:intron 40.0%
!! GAACTTAGATCCTCTGAAGT+TGG + chr1_4:20558542-20558561 Msa0155320:intron 40.0%
!! ATCCTCTGAAGTTGGCTTTA+TGG + chr1_4:20558550-20558569 Msa0155320:intron 40.0%
TACCATAAAGCCAACTTCAG+AGG - chr1_4:20558555-20558574 None:intergenic 40.0%
! AGTTAGATTGTTGGCCTGTT+TGG + chr1_4:20558581-20558600 Msa0155320:intron 40.0%
! GAGCCTCTTTGAGAAAGTTT+AGG + chr1_4:20558644-20558663 Msa0155320:intron 40.0%
!! GCCATTTTCATCAACCATCA+TGG - chr1_4:20558724-20558743 None:intergenic 40.0%
!! TTGGTCTGGTAGTATTGACT+TGG + chr1_4:20558817-20558836 Msa0155320:intron 40.0%
!! TGGTCTGGTAGTATTGACTT+GGG + chr1_4:20558818-20558837 Msa0155320:intron 40.0%
TAATTGAACCTGAGACCTTG+AGG - chr1_4:20558862-20558881 None:intergenic 40.0%
! GTGGGCTAATTTAGCTTCTT+CGG + chr1_4:20558900-20558919 Msa0155320:intron 40.0%
! CTTTCAATTGCTGGTGCTAA+TGG + chr1_4:20559247-20559266 Msa0155320:three_prime_UTR 40.0%
CTTCCAAATCAAGATTGGCA+TGG - chr1_4:20559297-20559316 None:intergenic 40.0%
!! CATGCCAATCTTGATTTGGA+AGG + chr1_4:20559295-20559314 Msa0155320:intron 40.0%
TCTCCCTTCCAAATCAAGAT+TGG - chr1_4:20559302-20559321 None:intergenic 40.0%
!! ATCTTGATTTGGAAGGGAGA+TGG + chr1_4:20559302-20559321 Msa0155320:three_prime_UTR 40.0%
CAAGGCAACTGAGCTTAGAT+TGG + chr1_4:20557472-20557491 Msa0155320:CDS 45.0%
GAGCTTAGATTGGGATTACC+AGG + chr1_4:20557482-20557501 Msa0155320:CDS 45.0%
! ATCTCCTTTTCATCTGTCCC+TGG - chr1_4:20557503-20557522 None:intergenic 45.0%
CTGAACAGTTGCAGTACGTA+TGG - chr1_4:20557772-20557791 None:intergenic 45.0%
CATACGTACTGCAACTGTTC+AGG + chr1_4:20557770-20557789 Msa0155320:intron 45.0%
TTGCAAGATGCTGAAGTTGG+TGG + chr1_4:20557931-20557950 Msa0155320:CDS 45.0%
! TGCAAGATGCTGAAGTTGGT+GGG + chr1_4:20557932-20557951 Msa0155320:CDS 45.0%
TGCACCAACCTATGAAGACA+AGG + chr1_4:20558422-20558441 Msa0155320:CDS 45.0%
CCATCCTTGTCTTCATAGGT+TGG - chr1_4:20558429-20558448 None:intergenic 45.0%
CCAACCTATGAAGACAAGGA+TGG + chr1_4:20558426-20558445 Msa0155320:CDS 45.0%
GTCACCATCCTTGTCTTCAT+AGG - chr1_4:20558433-20558452 None:intergenic 45.0%
ATGAAGACAAGGATGGTGAC+TGG + chr1_4:20558433-20558452 Msa0155320:CDS 45.0%
TGCTAGTTGGAGATGTTCCA+TGG + chr1_4:20558457-20558476 Msa0155320:CDS 45.0%
GCTAGTTGGAGATGTTCCAT+GGG + chr1_4:20558458-20558477 Msa0155320:CDS 45.0%
GGATTGAGAACTTACTCCCA+TGG - chr1_4:20558477-20558496 None:intergenic 45.0%
!!! TCCTCATCGGTTTTCCATGA+TGG + chr1_4:20558707-20558726 Msa0155320:intron 45.0%
ACCATCATGGAAAACCGATG+AGG - chr1_4:20558711-20558730 None:intergenic 45.0%
!! GGTCTGGTAGTATTGACTTG+GGG + chr1_4:20558819-20558838 Msa0155320:intron 45.0%
GTCTCAGGTTCAATTATCCC+TGG + chr1_4:20558866-20558885 Msa0155320:intron 45.0%
! ATCCCTGGTGTCAATTTGTG+TGG + chr1_4:20558881-20558900 Msa0155320:intron 45.0%
! TCCCTGGTGTCAATTTGTGT+GGG + chr1_4:20558882-20558901 Msa0155320:intron 45.0%
! ATGAAAGGCACAGAAGCTAG+AGG + chr1_4:20559139-20559158 Msa0155320:CDS 45.0%
CCAAATCAAGATTGGCATGG+TGG - chr1_4:20559294-20559313 None:intergenic 45.0%
CCACCATGCCAATCTTGATT+TGG + chr1_4:20559291-20559310 Msa0155320:intron 45.0%
CAAGGCAACTGAGCTTAGAT+TGG + chr1_4:20557472-20557491 Msa0155320:CDS 45.0%
GAGCTTAGATTGGGATTACC+AGG + chr1_4:20557482-20557501 Msa0155320:CDS 45.0%
! ATCTCCTTTTCATCTGTCCC+TGG - chr1_4:20557503-20557522 None:intergenic 45.0%
CTGAACAGTTGCAGTACGTA+TGG - chr1_4:20557772-20557791 None:intergenic 45.0%
CATACGTACTGCAACTGTTC+AGG + chr1_4:20557770-20557789 Msa0155320:intron 45.0%
TTGCAAGATGCTGAAGTTGG+TGG + chr1_4:20557931-20557950 Msa0155320:CDS 45.0%
! TGCAAGATGCTGAAGTTGGT+GGG + chr1_4:20557932-20557951 Msa0155320:CDS 45.0%
TGCACCAACCTATGAAGACA+AGG + chr1_4:20558422-20558441 Msa0155320:CDS 45.0%
CCATCCTTGTCTTCATAGGT+TGG - chr1_4:20558429-20558448 None:intergenic 45.0%
CCAACCTATGAAGACAAGGA+TGG + chr1_4:20558426-20558445 Msa0155320:CDS 45.0%
GTCACCATCCTTGTCTTCAT+AGG - chr1_4:20558433-20558452 None:intergenic 45.0%
ATGAAGACAAGGATGGTGAC+TGG + chr1_4:20558433-20558452 Msa0155320:CDS 45.0%
TGCTAGTTGGAGATGTTCCA+TGG + chr1_4:20558457-20558476 Msa0155320:CDS 45.0%
GCTAGTTGGAGATGTTCCAT+GGG + chr1_4:20558458-20558477 Msa0155320:CDS 45.0%
GGATTGAGAACTTACTCCCA+TGG - chr1_4:20558477-20558496 None:intergenic 45.0%
!!! TCCTCATCGGTTTTCCATGA+TGG + chr1_4:20558707-20558726 Msa0155320:intron 45.0%
ACCATCATGGAAAACCGATG+AGG - chr1_4:20558711-20558730 None:intergenic 45.0%
!! GGTCTGGTAGTATTGACTTG+GGG + chr1_4:20558819-20558838 Msa0155320:intron 45.0%
GTCTCAGGTTCAATTATCCC+TGG + chr1_4:20558866-20558885 Msa0155320:intron 45.0%
! ATCCCTGGTGTCAATTTGTG+TGG + chr1_4:20558881-20558900 Msa0155320:intron 45.0%
! TCCCTGGTGTCAATTTGTGT+GGG + chr1_4:20558882-20558901 Msa0155320:intron 45.0%
! ATGAAAGGCACAGAAGCTAG+AGG + chr1_4:20559139-20559158 Msa0155320:CDS 45.0%
CCAAATCAAGATTGGCATGG+TGG - chr1_4:20559294-20559313 None:intergenic 45.0%
CCACCATGCCAATCTTGATT+TGG + chr1_4:20559291-20559310 Msa0155320:intron 45.0%
TAGTAGGGTGGCCACCAATT+AGG + chr1_4:20557890-20557909 Msa0155320:CDS 50.0%
GGCCACCAATTAGGTCTTAC+AGG + chr1_4:20557899-20557918 Msa0155320:CDS 50.0%
GATGGTGACTGGATGCTAGT+TGG + chr1_4:20558444-20558463 Msa0155320:CDS 50.0%
AGCACTTACGCTAACCCACT+TGG + chr1_4:20558793-20558812 Msa0155320:intron 50.0%
GCACTTACGCTAACCCACTT+GGG + chr1_4:20558794-20558813 Msa0155320:intron 50.0%
TTACGCTAACCCACTTGGGT+TGG + chr1_4:20558798-20558817 Msa0155320:intron 50.0%
ACTACCAGACCAACCCAAGT+GGG - chr1_4:20558810-20558829 None:intergenic 50.0%
TACTACCAGACCAACCCAAG+TGG - chr1_4:20558811-20558830 None:intergenic 50.0%
!! GTAGTATTGACTTGGGGCCT+GGG + chr1_4:20558825-20558844 Msa0155320:intron 50.0%
TTGAACCTGAGACCTTGAGG+AGG - chr1_4:20558859-20558878 None:intergenic 50.0%
GCCCACACAAATTGACACCA+GGG - chr1_4:20558886-20558905 None:intergenic 50.0%
AGCCCACACAAATTGACACC+AGG - chr1_4:20558887-20558906 None:intergenic 50.0%
AGGCACAGAAGCTAGAGGTT+TGG + chr1_4:20559144-20559163 Msa0155320:CDS 50.0%
GGCACAGAAGCTAGAGGTTT+GGG + chr1_4:20559145-20559164 Msa0155320:CDS 50.0%
!! GAAGCTAGAGGTTTGGGTTG+TGG + chr1_4:20559151-20559170 Msa0155320:CDS 50.0%
TAGTAGGGTGGCCACCAATT+AGG + chr1_4:20557890-20557909 Msa0155320:CDS 50.0%
GGCCACCAATTAGGTCTTAC+AGG + chr1_4:20557899-20557918 Msa0155320:CDS 50.0%
GATGGTGACTGGATGCTAGT+TGG + chr1_4:20558444-20558463 Msa0155320:CDS 50.0%
AGCACTTACGCTAACCCACT+TGG + chr1_4:20558793-20558812 Msa0155320:intron 50.0%
GCACTTACGCTAACCCACTT+GGG + chr1_4:20558794-20558813 Msa0155320:intron 50.0%
TTACGCTAACCCACTTGGGT+TGG + chr1_4:20558798-20558817 Msa0155320:intron 50.0%
ACTACCAGACCAACCCAAGT+GGG - chr1_4:20558810-20558829 None:intergenic 50.0%
TACTACCAGACCAACCCAAG+TGG - chr1_4:20558811-20558830 None:intergenic 50.0%
!! GTAGTATTGACTTGGGGCCT+GGG + chr1_4:20558825-20558844 Msa0155320:intron 50.0%
TTGAACCTGAGACCTTGAGG+AGG - chr1_4:20558859-20558878 None:intergenic 50.0%
GCCCACACAAATTGACACCA+GGG - chr1_4:20558886-20558905 None:intergenic 50.0%
AGCCCACACAAATTGACACC+AGG - chr1_4:20558887-20558906 None:intergenic 50.0%
AGGCACAGAAGCTAGAGGTT+TGG + chr1_4:20559144-20559163 Msa0155320:CDS 50.0%
GGCACAGAAGCTAGAGGTTT+GGG + chr1_4:20559145-20559164 Msa0155320:CDS 50.0%
!! GAAGCTAGAGGTTTGGGTTG+TGG + chr1_4:20559151-20559170 Msa0155320:CDS 50.0%
GCAGGGCAAAGATAGTAGGG+TGG + chr1_4:20557878-20557897 Msa0155320:intron 55.0%
!! CTAACCCACTTGGGTTGGTC+TGG + chr1_4:20558803-20558822 Msa0155320:intron 55.0%
!! GGTAGTATTGACTTGGGGCC+TGG + chr1_4:20558824-20558843 Msa0155320:intron 55.0%
! TTGAGGAGGAGCATACTCCC+AGG - chr1_4:20558845-20558864 None:intergenic 55.0%
! TGGGAGTATGCTCCTCCTCA+AGG + chr1_4:20558844-20558863 Msa0155320:intron 55.0%
ATGCTCCTCCTCAAGGTCTC+AGG + chr1_4:20558851-20558870 Msa0155320:intron 55.0%
GCAGGGCAAAGATAGTAGGG+TGG + chr1_4:20557878-20557897 Msa0155320:intron 55.0%
!! CTAACCCACTTGGGTTGGTC+TGG + chr1_4:20558803-20558822 Msa0155320:intron 55.0%
!! GGTAGTATTGACTTGGGGCC+TGG + chr1_4:20558824-20558843 Msa0155320:intron 55.0%
! TTGAGGAGGAGCATACTCCC+AGG - chr1_4:20558845-20558864 None:intergenic 55.0%
! TGGGAGTATGCTCCTCCTCA+AGG + chr1_4:20558844-20558863 Msa0155320:intron 55.0%
ATGCTCCTCCTCAAGGTCTC+AGG + chr1_4:20558851-20558870 Msa0155320:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 20557274 20559595 20557274 ID=Msa0155320;Name=Msa0155320
chr1_4 mRNA 20557274 20559595 20557274 ID=Msa0155320-mRNA-1;Parent=Msa0155320;Name=Msa0155320-mRNA-1;_AED=0.06;_eAED=0.06;_QI=190|1|1|1|0.5|0.6|5|395|186
chr1_4 exon 20557274 20557657 20557274 ID=Msa0155320-mRNA-1:exon:7456;Parent=Msa0155320-mRNA-1
chr1_4 exon 20557882 20558072 20557882 ID=Msa0155320-mRNA-1:exon:7457;Parent=Msa0155320-mRNA-1
chr1_4 exon 20558382 20558481 20558382 ID=Msa0155320-mRNA-1:exon:7458;Parent=Msa0155320-mRNA-1
chr1_4 exon 20559105 20559277 20559105 ID=Msa0155320-mRNA-1:exon:7459;Parent=Msa0155320-mRNA-1
chr1_4 exon 20559298 20559595 20559298 ID=Msa0155320-mRNA-1:exon:7460;Parent=Msa0155320-mRNA-1
chr1_4 five_prime_UTR 20557274 20557463 20557274 ID=Msa0155320-mRNA-1:five_prime_utr;Parent=Msa0155320-mRNA-1
chr1_4 CDS 20557464 20557657 20557464 ID=Msa0155320-mRNA-1:cds;Parent=Msa0155320-mRNA-1
chr1_4 CDS 20557882 20558072 20557882 ID=Msa0155320-mRNA-1:cds;Parent=Msa0155320-mRNA-1
chr1_4 CDS 20558382 20558481 20558382 ID=Msa0155320-mRNA-1:cds;Parent=Msa0155320-mRNA-1
chr1_4 CDS 20559105 20559180 20559105 ID=Msa0155320-mRNA-1:cds;Parent=Msa0155320-mRNA-1
chr1_4 three_prime_UTR 20559181 20559277 20559181 ID=Msa0155320-mRNA-1:three_prime_utr;Parent=Msa0155320-mRNA-1
chr1_4 three_prime_UTR 20559298 20559595 20559298 ID=Msa0155320-mRNA-1:three_prime_utr;Parent=Msa0155320-mRNA-1
Gene Sequence

>Msa0155320

ATGGAATTCAAGGCAACTGAGCTTAGATTGGGATTACCAGGGACAGATGAAAAGGAGATGAAAACAATACATGGTAGAATTGTTAAGAATAACAAAAGACAATTACCTCAAACTTCTGAAGAATCTGTTTCAATTTCTAAGGTTTCAAATGATGATCAGCATGTGGAGAGTTCTTCTGCTGCCCCTCCTGCCAAGGCAAAGATAGTAGGGTGGCCACCAATTAGGTCTTACAGGAAAAACACTTTGCAAGATGCTGAAGTTGGTGGGATCTATGTGAAAGTGAGCATGGATGGTGCCCCTTATCTTAGAAAGATTGACTTGAGGATCTATGGAGGCTATCCAGAACTTCTCAAAGCTCTAGAAACCATGTTCAAATTGACCATAGGTGAGTATTCTGAAAGAGAGGGTTATAAGGGATCTGAATATGCACCAACCTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCCTGCAAAAGACTAAGAATCATGAAAGGCACAGAAGCTAGAGGTTTGGGTTGTGGTGTATGA
Protein sequence

>Msa0155320

MEFKATELRLGLPGTDEKEMKTIHGRIVKNNKRQLPQTSEESVSISKVSNDDQHVESSSAAPPAKAKIVGWPPIRSYRKNTLQDAEVGGIYVKVSMDGAPYLRKIDLRIYGGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEARGLGCGV*