AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0020390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0020390 MtrunA17_Chr5g0405891 98.052 154 3 0 3 156 2 155 2.15e-110 310
Msa0020390 MtrunA17_Chr5g0405871 96.104 154 6 0 3 156 2 155 1.52e-108 305
Msa0020390 MtrunA17_Chr7g0221641 87.179 156 20 0 1 156 1 156 4.45e-93 266
Msa0020390 MtrunA17_Chr7g0259261 86.538 156 21 0 1 156 1 156 3.66e-92 264
Msa0020390 MtrunA17_Chr7g0259271 86.538 156 21 0 1 156 1 156 4.03e-92 264
Msa0020390 MtrunA17_Chr7g0221621 83.333 156 26 0 1 156 1 156 3.39e-86 249
Msa0020390 MtrunA17_Chr3g0139751 76.582 158 35 1 1 156 1 158 9.52e-86 248
Msa0020390 MtrunA17_Chr4g0014211 78.846 156 32 1 2 156 8 163 1.10e-85 248
Msa0020390 MtrunA17_Chr7g0259231 75.159 157 37 1 2 156 3 159 4.14e-84 244
Msa0020390 MtrunA17_Chr4g0014231 73.885 157 40 1 1 156 19 175 5.05e-84 244
Msa0020390 MtrunA17_Chr8g0361911 73.885 157 40 1 1 156 1 157 1.44e-79 232
Msa0020390 MtrunA17_Chr7g0259371 72.152 158 42 2 1 156 1 158 5.36e-79 231
Msa0020390 MtrunA17_Chr5g0438791 72.078 154 42 1 3 155 2 155 1.97e-77 227
Msa0020390 MtrunA17_Chr8g0362291 69.677 155 46 1 3 156 2 156 4.48e-76 223
Msa0020390 MtrunA17_Chr4g0014271 68.790 157 41 3 2 156 3 153 2.48e-71 211
Msa0020390 MtrunA17_Chr4g0014241 72.258 155 36 2 3 156 2 150 1.50e-70 209
Msa0020390 MtrunA17_Chr4g0014261 66.667 156 45 2 2 156 3 152 8.45e-70 207
Msa0020390 MtrunA17_Chr4g0015171 60.390 154 61 0 3 156 7 160 3.82e-68 203
Msa0020390 MtrunA17_Chr7g0259381 66.456 158 37 3 1 156 1 144 8.33e-68 202
Msa0020390 MtrunA17_Chr4g0015151 60.390 154 61 0 3 156 7 160 4.60e-65 196
Msa0020390 MtrunA17_Chr4g0007651 56.410 195 42 4 5 156 26 220 1.35e-63 194
Msa0020390 MtrunA17_Chr4g0009571 58.710 155 61 1 2 156 4 155 8.74e-59 179
Msa0020390 MtrunA17_Chr1g0202631 83.333 96 14 1 63 156 201 296 8.00e-52 166
Msa0020390 MtrunA17_Chr8g0381421 69.919 123 20 1 34 156 1 106 2.15e-50 157
Msa0020390 MtrunA17_Chr7g0214701 54.610 141 55 2 2 142 4 135 6.63e-44 141
Msa0020390 MtrunA17_Chr7g0259441 53.846 156 30 4 1 114 1 156 9.24e-42 137
Msa0020390 MtrunA17_Chr7g0259421 47.093 172 38 4 1 119 1 172 6.20e-40 133
Msa0020390 MtrunA17_Chr4g0014221 63.000 100 23 2 57 156 2 87 3.41e-36 120
Msa0020390 MtrunA17_Chr5g0436881 69.512 82 24 1 3 83 32 113 1.16e-35 119
Msa0020390 MtrunA17_Chr4g0067031 48.980 147 68 2 2 146 235 376 2.52e-35 125
Msa0020390 MtrunA17_Chr4g0007851 61.856 97 35 1 62 156 54 150 3.54e-35 119
Msa0020390 MtrunA17_Chr4g0015161 58.416 101 34 1 33 133 8 100 1.52e-33 114
Msa0020390 MtrunA17_Chr1g0211011 39.355 155 78 2 8 146 1 155 1.26e-32 113
Msa0020390 MtrunA17_Chr4g0074721 57.983 119 33 4 3 119 2 105 4.04e-32 110
Msa0020390 MtrunA17_Chr7g0259391 85.000 60 8 1 1 59 1 60 2.46e-28 99.8
Msa0020390 MtrunA17_Chr2g0310471 39.873 158 83 5 1 155 30 178 2.21e-26 99.0
Msa0020390 MtrunA17_Chr7g0259411 50.459 109 32 2 1 109 1 87 2.30e-25 95.9
Msa0020390 MtrunA17_Chr7g0259411 51.685 89 39 3 48 135 102 187 5.75e-20 82.0
Msa0020390 MtrunA17_Chr5g0447291 37.736 159 78 4 1 155 1 142 1.34e-23 90.1
Msa0020390 MtrunA17_Chr2g0285701 34.667 150 85 3 8 156 3 140 2.09e-22 87.0
Msa0020390 MtrunA17_Chr1g0167301 35.256 156 63 4 8 146 1 135 3.08e-22 89.7
Msa0020390 MtrunA17_Chr1g0210991 34.810 158 65 4 8 148 1 137 5.61e-21 85.9
Msa0020390 MtrunA17_Chr4g0071681 79.167 48 9 1 94 140 2 49 8.44e-20 77.4
Msa0020390 MtrunA17_Chr6g0470511 36.806 144 81 5 8 146 17 155 3.01e-19 82.8
Msa0020390 MtrunA17_Chr2g0310571 37.333 150 67 5 8 155 20 144 8.41e-19 78.6
Msa0020390 MtrunA17_Chr4g0014291 61.818 55 20 1 98 151 1 55 1.42e-18 74.7
Msa0020390 MtrunA17_Chr8g0335711 34.286 140 80 4 10 143 13 146 1.75e-18 80.1
Msa0020390 MtrunA17_Chr7g0247861 34.722 144 84 4 8 146 18 156 7.16e-18 79.0
Msa0020390 MtrunA17_Chr8g0392111 70.690 58 13 2 1 57 1 55 8.59e-18 72.8
Msa0020390 MtrunA17_Chr8g0335731 32.414 145 85 4 10 147 13 151 8.75e-18 76.3
Msa0020390 MtrunA17_Chr2g0330971 32.667 150 92 4 1 146 4 148 3.94e-17 76.3
Msa0020390 MtrunA17_Chr2g0330981 33.793 145 80 5 10 146 13 149 5.81e-17 75.9
Msa0020390 MtrunA17_Chr8g0335691 32.877 146 87 4 8 147 11 151 6.35e-17 75.5
Msa0020390 MtrunA17_Chr8g0361921 58.333 60 24 1 96 154 19 78 3.28e-16 69.3
Msa0020390 MtrunA17_Chr4g0074671 39.286 112 58 2 5 112 9 114 8.16e-16 69.3
Msa0020390 MtrunA17_Chr7g0228441 34.043 141 82 6 1 135 1 136 1.54e-15 71.2
Msa0020390 MtrunA17_Chr1g0211001 30.723 166 63 5 8 128 1 159 2.73e-15 71.2
Msa0020390 MtrunA17_Chr8g0348821 29.932 147 93 3 8 149 18 159 1.56e-14 69.7
Msa0020390 MtrunA17_Chr4g0014281 61.111 54 21 0 94 147 1 54 1.61e-13 62.8
Msa0020390 MtrunA17_Chr3g0103481 33.684 95 56 2 53 146 1 89 3.28e-13 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0020390 AT5G42190.1 77.059 170 23 1 3 156 2 171 2.54e-85 248
Msa0020390 AT1G20140.1 72.393 163 38 2 1 156 1 163 3.78e-83 242
Msa0020390 AT1G75950.1 77.987 159 29 1 4 156 2 160 3.89e-83 242
Msa0020390 AT2G25700.1 68.712 163 44 2 1 156 1 163 1.92e-78 230
Msa0020390 AT4G34210.1 70.130 154 42 2 4 156 2 152 1.85e-76 224
Msa0020390 AT4G34470.1 69.481 154 43 2 4 156 2 152 1.15e-75 223
Msa0020390 AT3G21860.1 67.097 155 45 3 4 156 2 152 5.05e-68 203
Msa0020390 AT3G21850.1 64.516 155 50 3 4 156 2 153 7.31e-67 200
Msa0020390 AT3G60010.1 64.331 157 47 3 5 156 2 154 2.18e-66 199
Msa0020390 AT2G03170.1 62.338 154 51 2 4 156 2 149 2.36e-63 191
Msa0020390 AT2G03190.1 55.422 166 61 3 4 156 2 167 7.51e-59 181
Msa0020390 AT3G60020.1 57.692 156 54 3 7 156 4 153 5.81e-57 175
Msa0020390 AT3G21830.1 56.494 154 63 2 4 156 2 152 1.08e-55 172
Msa0020390 AT2G03160.1 48.677 189 61 3 4 156 2 190 1.09e-55 174
Msa0020390 AT2G20160.1 54.902 153 63 2 4 155 2 149 2.15e-53 166
Msa0020390 AT3G25650.1 57.229 166 58 5 4 156 2 167 3.19e-53 167
Msa0020390 AT1G10230.1 56.774 155 64 2 4 155 2 156 4.94e-52 163
Msa0020390 AT3G21840.1 58.333 120 44 3 4 121 2 117 1.78e-37 125
Msa0020390 AT3G53060.1 66.279 86 22 3 29 113 1 80 8.54e-32 109
Msa0020390 AT3G61415.2 33.333 144 86 4 8 146 18 156 2.54e-16 74.7
Msa0020390 AT3G61415.1 33.333 144 86 4 8 146 18 156 2.65e-16 74.7
Msa0020390 AT2G45950.5 31.944 144 88 4 8 146 18 156 3.80e-16 74.3
Msa0020390 AT2G45950.2 31.944 144 88 4 8 146 18 156 3.80e-16 74.3
Msa0020390 AT2G45950.3 31.944 144 88 4 8 146 18 156 3.89e-16 74.3
Msa0020390 AT2G45950.1 31.944 144 88 4 8 146 18 156 3.89e-16 74.3
Msa0020390 AT2G45950.4 31.944 144 88 4 8 146 18 156 3.89e-16 74.3

Find 59 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAGTACTTGTTTATCTTT+TGG 0.200183 1_1:+35324344 Msa0020390:three_prime_UTR
AATCGTGATGTGATTGATTA+GGG 0.310868 1_1:-35322343 None:intergenic
AAGTTACTCGCTGTTAAAAT+TGG 0.311029 1_1:+35324545 Msa0020390:three_prime_UTR
TGAACGAACGTGTAAAACTA+TGG 0.327144 1_1:-35322237 None:intergenic
TAATCGTGATGTGATTGATT+AGG 0.337427 1_1:-35322344 None:intergenic
ATTAGGGTTTCGTTCAGAAT+TGG 0.352807 1_1:-35322327 None:intergenic
CTTGAATATCAAGAGCTTGC+TGG 0.358298 1_1:+35324095 Msa0020390:CDS
GGTCGATGAAGCGGTTGCTT+TGG 0.364221 1_1:+35322428 Msa0020390:CDS
CAACGTTACCAGCAAGATCT+TGG 0.386921 1_1:+35322512 Msa0020390:CDS
CGAGGATGAGCTTAAGTCTT+GGG 0.409245 1_1:+35322596 Msa0020390:CDS
CGAGTTCGTCAAGGTTGATC+AGG 0.435035 1_1:+35322623 Msa0020390:CDS
CACCTTCGCCAAGATCTTGC+TGG 0.436666 1_1:-35322520 None:intergenic
AATGTCTTGCGGATCTCCTC+TGG 0.448832 1_1:-35324162 None:intergenic
GACTTAAGCTCATCCTCGTT+AGG 0.455978 1_1:-35322591 None:intergenic
TGATCATGTCTGCAACAGTC+TGG 0.461006 1_1:-35324128 None:intergenic
AAGATCTTGCTGGTAACGTT+GGG 0.477857 1_1:-35322510 None:intergenic
TTAAAATTGGTACTAACAAA+GGG 0.479237 1_1:+35324558 Msa0020390:three_prime_UTR
GATGAGCTAATGCGTTGGTT+TGG 0.479992 1_1:+35324475 Msa0020390:three_prime_UTR
GTTAAAATTGGTACTAACAA+AGG 0.489344 1_1:+35324557 Msa0020390:three_prime_UTR
CATGTCTGCAACAGTCTGGC+AGG 0.496105 1_1:-35324124 None:intergenic
GAGTGTTGACTATGTTTCAC+TGG 0.496791 1_1:+35324380 Msa0020390:three_prime_UTR
TGATTTCTCACCTGAGGAAG+AGG 0.505723 1_1:+35324197 Msa0020390:CDS
TGCTGGTAACGTTGGGAAGA+GGG 0.508109 1_1:-35322503 None:intergenic
TTGCTGGTAACGTTGGGAAG+AGG 0.523250 1_1:-35322504 None:intergenic
TAATGCGTTGGTTTGGCATG+AGG 0.525286 1_1:+35324482 Msa0020390:three_prime_UTR
TAAAACTATGGGCGTGCGTG+AGG 0.530705 1_1:-35322225 None:intergenic
CAAGATCTTGCTGGTAACGT+TGG 0.530853 1_1:-35322511 None:intergenic
CGAACTTCCTCCTCTTCCTC+AGG 0.533819 1_1:-35324207 None:intergenic
GACTGTTGCAGACATGATCA+AGG 0.534990 1_1:+35324131 Msa0020390:CDS
CTGATCAACCTTGACGAACT+CGG 0.543997 1_1:-35322622 None:intergenic
ACGAGGATGAGCTTAAGTCT+TGG 0.544399 1_1:+35322595 Msa0020390:CDS
AATGCGTTGGTTTGGCATGA+GGG 0.544945 1_1:+35324483 Msa0020390:three_prime_UTR
AGCATCATTCAAATGCCCAT+TGG 0.546088 1_1:-35324239 None:intergenic
AGGAAGAGGAGGAAGTTCGT+AGG 0.548370 1_1:+35324211 Msa0020390:CDS
GGAAGAGGAGGAAGTTCGTA+GGG 0.553401 1_1:+35324212 Msa0020390:CDS
AGTTCGTAGGGAAAACCAAT+GGG 0.562143 1_1:+35324224 Msa0020390:CDS
AAGTTCGTAGGGAAAACCAA+TGG 0.564773 1_1:+35324223 Msa0020390:CDS
AAAACTATGGGCGTGCGTGA+GGG 0.568266 1_1:-35322224 None:intergenic
GAACGAACGTGTAAAACTAT+GGG 0.571271 1_1:-35322236 None:intergenic
AAACTATGGGCGTGCGTGAG+GGG 0.578524 1_1:-35322223 None:intergenic
TCTTGATGTTGAATGTCTTG+CGG 0.592623 1_1:-35324173 None:intergenic
TTGGGATTCCGAGTTCGTCA+AGG 0.598524 1_1:+35322614 Msa0020390:CDS
GAAGATGATTGCGCTGACAG+TGG 0.607194 1_1:+35322477 Msa0020390:CDS
GACCTTCGAGGTCGATGAAG+CGG 0.610768 1_1:+35322419 Msa0020390:CDS
TTCCGACGGTGAGACCTTCG+AGG 0.613590 1_1:+35322407 Msa0020390:CDS
ATCACTCTGAAGAGTTCCGA+CGG 0.622850 1_1:+35322393 Msa0020390:CDS
AACCGCTTCATCGACCTCGA+AGG 0.623664 1_1:-35322421 None:intergenic
TACCAGCAAGATCTTGGCGA+AGG 0.627734 1_1:+35322518 Msa0020390:CDS
TTTCTCACCTGAGGAAGAGG+AGG 0.645844 1_1:+35324200 Msa0020390:CDS
CAAGAATGATTTCTCACCTG+AGG 0.653595 1_1:+35324191 Msa0020390:CDS
ACTGTTGCAGACATGATCAA+GGG 0.659883 1_1:+35324132 Msa0020390:CDS
GACCTCGAAGGTCTCACCGT+CGG 0.662584 1_1:-35322409 None:intergenic
ATTATAGTGCTCCTACGTGG+AGG 0.664778 1_1:-35322192 None:intergenic
TTACTGCTTGAACTTAAGTG+CGG 0.668620 1_1:+35324415 Msa0020390:three_prime_UTR
TGCTGAAGACAAACCTAACG+AGG 0.677963 1_1:+35322578 Msa0020390:CDS
AAAAGATAAAACCTCCACGT+AGG 0.698192 1_1:+35322181 None:intergenic
TGATTGATGAGCTAATGCGT+TGG 0.699912 1_1:+35324470 Msa0020390:three_prime_UTR
ATAATTATAGTGCTCCTACG+TGG 0.713926 1_1:-35322195 None:intergenic
GATCAAGGGAAAGACACCAG+AGG 0.742039 1_1:+35324146 Msa0020390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTGATTTTGTTTT+GGG + chr1_1:35322721-35322740 Msa0020390:intron 10.0%
!!! TTATTTAATTTAAATGGTTA+AGG + chr1_1:35324020-35324039 Msa0020390:intron 10.0%
!!! TTTTTATTTGATTTTGTTTT+GGG + chr1_1:35322721-35322740 Msa0020390:intron 10.0%
!!! TTATTTAATTTAAATGGTTA+AGG + chr1_1:35324020-35324039 Msa0020390:intron 10.0%
!!! TTTTATCGTTTATTTGATTT+GGG + chr1_1:35322698-35322717 Msa0020390:intron 15.0%
!!! GTTTTTATTTGATTTTGTTT+TGG + chr1_1:35322720-35322739 Msa0020390:intron 15.0%
!!! TTTTATTTGATTTTGTTTTG+GGG + chr1_1:35322722-35322741 Msa0020390:intron 15.0%
!!! TTGTAGAATATTGTTATTTA+TGG + chr1_1:35323014-35323033 Msa0020390:intron 15.0%
!!! GATTTTATTATGTTTTCATT+TGG + chr1_1:35323083-35323102 Msa0020390:intron 15.0%
!!! GGTTTATTCTTTTAAATTTT+AGG + chr1_1:35323779-35323798 Msa0020390:intron 15.0%
!!! TACTTAGGTTTTTTTAATAA+TGG - chr1_1:35323858-35323877 None:intergenic 15.0%
!!! TTGACATTTTTTTTCTTTTT+AGG + chr1_1:35324062-35324081 Msa0020390:intron 15.0%
!!! TTTTATCGTTTATTTGATTT+GGG + chr1_1:35322698-35322717 Msa0020390:intron 15.0%
!!! GTTTTTATTTGATTTTGTTT+TGG + chr1_1:35322720-35322739 Msa0020390:intron 15.0%
!!! TTTTATTTGATTTTGTTTTG+GGG + chr1_1:35322722-35322741 Msa0020390:intron 15.0%
!!! TTGTAGAATATTGTTATTTA+TGG + chr1_1:35323014-35323033 Msa0020390:intron 15.0%
!!! GATTTTATTATGTTTTCATT+TGG + chr1_1:35323083-35323102 Msa0020390:intron 15.0%
!!! GGTTTATTCTTTTAAATTTT+AGG + chr1_1:35323779-35323798 Msa0020390:intron 15.0%
!!! TACTTAGGTTTTTTTAATAA+TGG - chr1_1:35323858-35323877 None:intergenic 15.0%
!!! TTGACATTTTTTTTCTTTTT+AGG + chr1_1:35324062-35324081 Msa0020390:intron 15.0%
!!! GTTTTATCGTTTATTTGATT+TGG + chr1_1:35322697-35322716 Msa0020390:intron 20.0%
!! GAAAAATCTGAATAGTTTAT+TGG + chr1_1:35322777-35322796 Msa0020390:intron 20.0%
!!! ATTTCAATTTGTCTTTTGTT+TGG + chr1_1:35322838-35322857 Msa0020390:intron 20.0%
!!! TTTCAATTTGTCTTTTGTTT+GGG + chr1_1:35322839-35322858 Msa0020390:intron 20.0%
!!! ATGTTTATGTTATGTTTTGT+TGG + chr1_1:35323169-35323188 Msa0020390:intron 20.0%
!! TTCTAATGTATTTGATTAAG+TGG + chr1_1:35323312-35323331 Msa0020390:intron 20.0%
!! TTCATAAATCAATTGATGTT+CGG - chr1_1:35323561-35323580 None:intergenic 20.0%
!! AATAAAGAACATATAAAGCA+TGG + chr1_1:35323617-35323636 Msa0020390:intron 20.0%
!! TAAGGCTGATTATATATTAT+TGG + chr1_1:35324038-35324057 Msa0020390:intron 20.0%
!! TTCAACAAAAATTTACATTG+TGG + chr1_1:35324263-35324282 Msa0020390:three_prime_UTR 20.0%
!!! GAGTAACTTACATTTTTTAA+TGG - chr1_1:35324534-35324553 None:intergenic 20.0%
!! TTAAAATTGGTACTAACAAA+GGG + chr1_1:35324558-35324577 Msa0020390:three_prime_UTR 20.0%
!!! GTTTTATCGTTTATTTGATT+TGG + chr1_1:35322697-35322716 Msa0020390:intron 20.0%
!! GAAAAATCTGAATAGTTTAT+TGG + chr1_1:35322777-35322796 Msa0020390:intron 20.0%
!!! ATTTCAATTTGTCTTTTGTT+TGG + chr1_1:35322838-35322857 Msa0020390:intron 20.0%
!!! TTTCAATTTGTCTTTTGTTT+GGG + chr1_1:35322839-35322858 Msa0020390:intron 20.0%
!!! ATGTTTATGTTATGTTTTGT+TGG + chr1_1:35323169-35323188 Msa0020390:intron 20.0%
!! TTCTAATGTATTTGATTAAG+TGG + chr1_1:35323312-35323331 Msa0020390:intron 20.0%
!! TTCATAAATCAATTGATGTT+CGG - chr1_1:35323561-35323580 None:intergenic 20.0%
!! AATAAAGAACATATAAAGCA+TGG + chr1_1:35323617-35323636 Msa0020390:intron 20.0%
!! TAAGGCTGATTATATATTAT+TGG + chr1_1:35324038-35324057 Msa0020390:intron 20.0%
!! TTCAACAAAAATTTACATTG+TGG + chr1_1:35324263-35324282 Msa0020390:three_prime_UTR 20.0%
!!! GAGTAACTTACATTTTTTAA+TGG - chr1_1:35324534-35324553 None:intergenic 20.0%
!! TTAAAATTGGTACTAACAAA+GGG + chr1_1:35324558-35324577 Msa0020390:three_prime_UTR 20.0%
! TTCCGATTCAGAAAAAAATT+AGG + chr1_1:35322271-35322290 Msa0020390:five_prime_UTR 25.0%
! TCCGATTCAGAAAAAAATTA+GGG + chr1_1:35322272-35322291 Msa0020390:five_prime_UTR 25.0%
!!! ACCCTAATTTTTTTCTGAAT+CGG - chr1_1:35322276-35322295 None:intergenic 25.0%
!! ATCTTGGTAAGTTTCTTTTA+GGG + chr1_1:35322663-35322682 Msa0020390:intron 25.0%
! CAACGATTCAGATAAAAAAT+AGG - chr1_1:35322807-35322826 None:intergenic 25.0%
!!! TTTGTTTGGGTTGAATTTAA+TGG + chr1_1:35322852-35322871 Msa0020390:intron 25.0%
!!! TTGTTTGGGTTGAATTTAAT+GGG + chr1_1:35322853-35322872 Msa0020390:intron 25.0%
!!! ATTAAGTGGTTCTAATTTTC+AGG + chr1_1:35323326-35323345 Msa0020390:intron 25.0%
!! ACATTGTCTCAATATTTTGT+TGG - chr1_1:35323669-35323688 None:intergenic 25.0%
! TTAAAAAAACCTAAGTAGTC+TGG + chr1_1:35323861-35323880 Msa0020390:intron 25.0%
!! CTAAGTACTTGTTTATCTTT+TGG + chr1_1:35324344-35324363 Msa0020390:three_prime_UTR 25.0%
! GTTAAAATTGGTACTAACAA+AGG + chr1_1:35324557-35324576 Msa0020390:three_prime_UTR 25.0%
! TTCCGATTCAGAAAAAAATT+AGG + chr1_1:35322271-35322290 Msa0020390:five_prime_UTR 25.0%
! TCCGATTCAGAAAAAAATTA+GGG + chr1_1:35322272-35322291 Msa0020390:five_prime_UTR 25.0%
!!! ACCCTAATTTTTTTCTGAAT+CGG - chr1_1:35322276-35322295 None:intergenic 25.0%
!! ATCTTGGTAAGTTTCTTTTA+GGG + chr1_1:35322663-35322682 Msa0020390:intron 25.0%
! CAACGATTCAGATAAAAAAT+AGG - chr1_1:35322807-35322826 None:intergenic 25.0%
!!! TTTGTTTGGGTTGAATTTAA+TGG + chr1_1:35322852-35322871 Msa0020390:intron 25.0%
!!! TTGTTTGGGTTGAATTTAAT+GGG + chr1_1:35322853-35322872 Msa0020390:intron 25.0%
!!! ATTAAGTGGTTCTAATTTTC+AGG + chr1_1:35323326-35323345 Msa0020390:intron 25.0%
!! ACATTGTCTCAATATTTTGT+TGG - chr1_1:35323669-35323688 None:intergenic 25.0%
! TTAAAAAAACCTAAGTAGTC+TGG + chr1_1:35323861-35323880 Msa0020390:intron 25.0%
!! CTAAGTACTTGTTTATCTTT+TGG + chr1_1:35324344-35324363 Msa0020390:three_prime_UTR 25.0%
! GTTAAAATTGGTACTAACAA+AGG + chr1_1:35324557-35324576 Msa0020390:three_prime_UTR 25.0%
AATCGTGATGTGATTGATTA+GGG - chr1_1:35322346-35322365 None:intergenic 30.0%
TAATCGTGATGTGATTGATT+AGG - chr1_1:35322347-35322366 None:intergenic 30.0%
! CATCTTGGTAAGTTTCTTTT+AGG + chr1_1:35322662-35322681 Msa0020390:intron 30.0%
!!! TTTTGGGGTCCTAAATTATT+AGG + chr1_1:35322737-35322756 Msa0020390:intron 30.0%
! TTTGGGGTCCTAAATTATTA+GGG + chr1_1:35322738-35322757 Msa0020390:intron 30.0%
CCAGAAAACCCTAATAATTT+AGG - chr1_1:35322749-35322768 None:intergenic 30.0%
! CCTAAATTATTAGGGTTTTC+TGG + chr1_1:35322746-35322765 Msa0020390:intron 30.0%
!! AATTATTAGGGTTTTCTGGT+TGG + chr1_1:35322750-35322769 Msa0020390:intron 30.0%
AATATTCGTTCGTGTTTGTT+TGG + chr1_1:35323213-35323232 Msa0020390:intron 30.0%
TACGCGTTTACTGAAAATTA+AGG + chr1_1:35323350-35323369 Msa0020390:intron 30.0%
ACGCGTTTACTGAAAATTAA+GGG + chr1_1:35323351-35323370 Msa0020390:intron 30.0%
GTATGATATCGTTGTTTGTA+TGG + chr1_1:35323498-35323517 Msa0020390:intron 30.0%
ATGAAATTAAACTAGCTGCA+AGG + chr1_1:35323576-35323595 Msa0020390:intron 30.0%
TGAAATTAAACTAGCTGCAA+GGG + chr1_1:35323577-35323596 Msa0020390:intron 30.0%
ACAACTTCTAGTAAATGTTG+TGG + chr1_1:35323757-35323776 Msa0020390:intron 30.0%
CAACTTCTAGTAAATGTTGT+GGG + chr1_1:35323758-35323777 Msa0020390:intron 30.0%
!! AAATTTTAGGAGCCCAAATA+TGG + chr1_1:35323792-35323811 Msa0020390:intron 30.0%
ACAAACAAACAGCCATATTT+GGG - chr1_1:35323807-35323826 None:intergenic 30.0%
AACAAACAAACAGCCATATT+TGG - chr1_1:35323808-35323827 None:intergenic 30.0%
!! GTGTTGCTGAAAATTGTTTT+TGG + chr1_1:35323829-35323848 Msa0020390:intron 30.0%
AACAATAATCCAGACTACTT+AGG - chr1_1:35323873-35323892 None:intergenic 30.0%
TTGTTGAGGAAATTGAAGTT+TGG + chr1_1:35323888-35323907 Msa0020390:intron 30.0%
AAGTTACTCGCTGTTAAAAT+TGG + chr1_1:35324545-35324564 Msa0020390:three_prime_UTR 30.0%
AATCGTGATGTGATTGATTA+GGG - chr1_1:35322346-35322365 None:intergenic 30.0%
TAATCGTGATGTGATTGATT+AGG - chr1_1:35322347-35322366 None:intergenic 30.0%
! CATCTTGGTAAGTTTCTTTT+AGG + chr1_1:35322662-35322681 Msa0020390:intron 30.0%
!!! TTTTGGGGTCCTAAATTATT+AGG + chr1_1:35322737-35322756 Msa0020390:intron 30.0%
! TTTGGGGTCCTAAATTATTA+GGG + chr1_1:35322738-35322757 Msa0020390:intron 30.0%
CCAGAAAACCCTAATAATTT+AGG - chr1_1:35322749-35322768 None:intergenic 30.0%
! CCTAAATTATTAGGGTTTTC+TGG + chr1_1:35322746-35322765 Msa0020390:intron 30.0%
!! AATTATTAGGGTTTTCTGGT+TGG + chr1_1:35322750-35322769 Msa0020390:intron 30.0%
AATATTCGTTCGTGTTTGTT+TGG + chr1_1:35323213-35323232 Msa0020390:intron 30.0%
TACGCGTTTACTGAAAATTA+AGG + chr1_1:35323350-35323369 Msa0020390:intron 30.0%
ACGCGTTTACTGAAAATTAA+GGG + chr1_1:35323351-35323370 Msa0020390:intron 30.0%
GTATGATATCGTTGTTTGTA+TGG + chr1_1:35323498-35323517 Msa0020390:intron 30.0%
ATGAAATTAAACTAGCTGCA+AGG + chr1_1:35323576-35323595 Msa0020390:intron 30.0%
TGAAATTAAACTAGCTGCAA+GGG + chr1_1:35323577-35323596 Msa0020390:intron 30.0%
ACAACTTCTAGTAAATGTTG+TGG + chr1_1:35323757-35323776 Msa0020390:intron 30.0%
CAACTTCTAGTAAATGTTGT+GGG + chr1_1:35323758-35323777 Msa0020390:intron 30.0%
!! AAATTTTAGGAGCCCAAATA+TGG + chr1_1:35323792-35323811 Msa0020390:intron 30.0%
ACAAACAAACAGCCATATTT+GGG - chr1_1:35323807-35323826 None:intergenic 30.0%
AACAAACAAACAGCCATATT+TGG - chr1_1:35323808-35323827 None:intergenic 30.0%
!! GTGTTGCTGAAAATTGTTTT+TGG + chr1_1:35323829-35323848 Msa0020390:intron 30.0%
AACAATAATCCAGACTACTT+AGG - chr1_1:35323873-35323892 None:intergenic 30.0%
TTGTTGAGGAAATTGAAGTT+TGG + chr1_1:35323888-35323907 Msa0020390:intron 30.0%
AAGTTACTCGCTGTTAAAAT+TGG + chr1_1:35324545-35324564 Msa0020390:three_prime_UTR 30.0%
ATAATTATAGTGCTCCTACG+TGG - chr1_1:35322198-35322217 None:intergenic 35.0%
GAACGAACGTGTAAAACTAT+GGG - chr1_1:35322239-35322258 None:intergenic 35.0%
TGAACGAACGTGTAAAACTA+TGG - chr1_1:35322240-35322259 None:intergenic 35.0%
!!! AGGGTTTTGATTTCTCGAAA+AGG + chr1_1:35322291-35322310 Msa0020390:five_prime_UTR 35.0%
!!! GGGTTTTGATTTCTCGAAAA+GGG + chr1_1:35322292-35322311 Msa0020390:five_prime_UTR 35.0%
!!! GGTTTTGATTTCTCGAAAAG+GGG + chr1_1:35322293-35322312 Msa0020390:five_prime_UTR 35.0%
ATTAGGGTTTCGTTCAGAAT+TGG - chr1_1:35322330-35322349 None:intergenic 35.0%
!! TACGCTTTTTGATCTCATCT+TGG + chr1_1:35322647-35322666 Msa0020390:CDS 35.0%
AATAGCATATAGCCCAATAG+AGG - chr1_1:35322940-35322959 None:intergenic 35.0%
ATGCTATTGTGAAATCCGAA+AGG + chr1_1:35323048-35323067 Msa0020390:intron 35.0%
TGCTATTGTGAAATCCGAAA+GGG + chr1_1:35323049-35323068 Msa0020390:intron 35.0%
AGAGAATTTGACATAGTGAG+TGG - chr1_1:35323142-35323161 None:intergenic 35.0%
CACACAATCACTTAAAGAAG+TGG + chr1_1:35323289-35323308 Msa0020390:intron 35.0%
TGGAACTATAGTGAACTGAA+TGG + chr1_1:35323518-35323537 Msa0020390:intron 35.0%
AAGCATGGACTTACTGTTAA+CGG + chr1_1:35323632-35323651 Msa0020390:intron 35.0%
! TTGTACTATGTCACTTGTCA+AGG + chr1_1:35323698-35323717 Msa0020390:intron 35.0%
! ACACTATCGATTAGAAGTGT+CGG + chr1_1:35323730-35323749 Msa0020390:intron 35.0%
AGTAGTCTGGATTATTGTTG+AGG + chr1_1:35323874-35323893 Msa0020390:intron 35.0%
CGAGAGAATGTAAAATGCAA+TGG - chr1_1:35323973-35323992 None:intergenic 35.0%
ATAAAAACAACACACTGCAG+TGG - chr1_1:35324004-35324023 None:intergenic 35.0%
TCTTGATGTTGAATGTCTTG+CGG - chr1_1:35324176-35324195 None:intergenic 35.0%
TTACTGCTTGAACTTAAGTG+CGG + chr1_1:35324415-35324434 Msa0020390:three_prime_UTR 35.0%
ATAATTATAGTGCTCCTACG+TGG - chr1_1:35322198-35322217 None:intergenic 35.0%
GAACGAACGTGTAAAACTAT+GGG - chr1_1:35322239-35322258 None:intergenic 35.0%
TGAACGAACGTGTAAAACTA+TGG - chr1_1:35322240-35322259 None:intergenic 35.0%
!!! AGGGTTTTGATTTCTCGAAA+AGG + chr1_1:35322291-35322310 Msa0020390:five_prime_UTR 35.0%
!!! GGGTTTTGATTTCTCGAAAA+GGG + chr1_1:35322292-35322311 Msa0020390:five_prime_UTR 35.0%
!!! GGTTTTGATTTCTCGAAAAG+GGG + chr1_1:35322293-35322312 Msa0020390:five_prime_UTR 35.0%
ATTAGGGTTTCGTTCAGAAT+TGG - chr1_1:35322330-35322349 None:intergenic 35.0%
!! TACGCTTTTTGATCTCATCT+TGG + chr1_1:35322647-35322666 Msa0020390:CDS 35.0%
AATAGCATATAGCCCAATAG+AGG - chr1_1:35322940-35322959 None:intergenic 35.0%
ATGCTATTGTGAAATCCGAA+AGG + chr1_1:35323048-35323067 Msa0020390:intron 35.0%
TGCTATTGTGAAATCCGAAA+GGG + chr1_1:35323049-35323068 Msa0020390:intron 35.0%
AGAGAATTTGACATAGTGAG+TGG - chr1_1:35323142-35323161 None:intergenic 35.0%
CACACAATCACTTAAAGAAG+TGG + chr1_1:35323289-35323308 Msa0020390:intron 35.0%
TGGAACTATAGTGAACTGAA+TGG + chr1_1:35323518-35323537 Msa0020390:intron 35.0%
AAGCATGGACTTACTGTTAA+CGG + chr1_1:35323632-35323651 Msa0020390:intron 35.0%
! TTGTACTATGTCACTTGTCA+AGG + chr1_1:35323698-35323717 Msa0020390:intron 35.0%
! ACACTATCGATTAGAAGTGT+CGG + chr1_1:35323730-35323749 Msa0020390:intron 35.0%
AGTAGTCTGGATTATTGTTG+AGG + chr1_1:35323874-35323893 Msa0020390:intron 35.0%
CGAGAGAATGTAAAATGCAA+TGG - chr1_1:35323973-35323992 None:intergenic 35.0%
ATAAAAACAACACACTGCAG+TGG - chr1_1:35324004-35324023 None:intergenic 35.0%
TCTTGATGTTGAATGTCTTG+CGG - chr1_1:35324176-35324195 None:intergenic 35.0%
TTACTGCTTGAACTTAAGTG+CGG + chr1_1:35324415-35324434 Msa0020390:three_prime_UTR 35.0%
! AAGATCTTGCTGGTAACGTT+GGG - chr1_1:35322513-35322532 None:intergenic 40.0%
AAAAAGATAGCCACAAGAGC+AGG - chr1_1:35322985-35323004 None:intergenic 40.0%
GCTATTGTGAAATCCGAAAG+GGG + chr1_1:35323050-35323069 Msa0020390:intron 40.0%
ATCGCTGAATATTCCCCTTT+CGG - chr1_1:35323066-35323085 None:intergenic 40.0%
! TATGTCACTTGTCAAGGTTC+TGG + chr1_1:35323704-35323723 Msa0020390:intron 40.0%
CTTGAATATCAAGAGCTTGC+TGG + chr1_1:35324095-35324114 Msa0020390:CDS 40.0%
ACTGTTGCAGACATGATCAA+GGG + chr1_1:35324132-35324151 Msa0020390:CDS 40.0%
CAAGAATGATTTCTCACCTG+AGG + chr1_1:35324191-35324210 Msa0020390:CDS 40.0%
AAGTTCGTAGGGAAAACCAA+TGG + chr1_1:35324223-35324242 Msa0020390:CDS 40.0%
AGTTCGTAGGGAAAACCAAT+GGG + chr1_1:35324224-35324243 Msa0020390:CDS 40.0%
AGCATCATTCAAATGCCCAT+TGG - chr1_1:35324242-35324261 None:intergenic 40.0%
!! GAGTGTTGACTATGTTTCAC+TGG + chr1_1:35324380-35324399 Msa0020390:three_prime_UTR 40.0%
TGATTGATGAGCTAATGCGT+TGG + chr1_1:35324470-35324489 Msa0020390:three_prime_UTR 40.0%
! AAGATCTTGCTGGTAACGTT+GGG - chr1_1:35322513-35322532 None:intergenic 40.0%
AAAAAGATAGCCACAAGAGC+AGG - chr1_1:35322985-35323004 None:intergenic 40.0%
GCTATTGTGAAATCCGAAAG+GGG + chr1_1:35323050-35323069 Msa0020390:intron 40.0%
ATCGCTGAATATTCCCCTTT+CGG - chr1_1:35323066-35323085 None:intergenic 40.0%
! TATGTCACTTGTCAAGGTTC+TGG + chr1_1:35323704-35323723 Msa0020390:intron 40.0%
CTTGAATATCAAGAGCTTGC+TGG + chr1_1:35324095-35324114 Msa0020390:CDS 40.0%
ACTGTTGCAGACATGATCAA+GGG + chr1_1:35324132-35324151 Msa0020390:CDS 40.0%
CAAGAATGATTTCTCACCTG+AGG + chr1_1:35324191-35324210 Msa0020390:CDS 40.0%
AAGTTCGTAGGGAAAACCAA+TGG + chr1_1:35324223-35324242 Msa0020390:CDS 40.0%
AGTTCGTAGGGAAAACCAAT+GGG + chr1_1:35324224-35324243 Msa0020390:CDS 40.0%
AGCATCATTCAAATGCCCAT+TGG - chr1_1:35324242-35324261 None:intergenic 40.0%
!! GAGTGTTGACTATGTTTCAC+TGG + chr1_1:35324380-35324399 Msa0020390:three_prime_UTR 40.0%
TGATTGATGAGCTAATGCGT+TGG + chr1_1:35324470-35324489 Msa0020390:three_prime_UTR 40.0%
ATTATAGTGCTCCTACGTGG+AGG - chr1_1:35322195-35322214 None:intergenic 45.0%
! ATCACTCTGAAGAGTTCCGA+CGG + chr1_1:35322393-35322412 Msa0020390:CDS 45.0%
! CAAGATCTTGCTGGTAACGT+TGG - chr1_1:35322514-35322533 None:intergenic 45.0%
CAACGTTACCAGCAAGATCT+TGG + chr1_1:35322512-35322531 Msa0020390:CDS 45.0%
TGCTGAAGACAAACCTAACG+AGG + chr1_1:35322578-35322597 Msa0020390:CDS 45.0%
GACTTAAGCTCATCCTCGTT+AGG - chr1_1:35322594-35322613 None:intergenic 45.0%
ACGAGGATGAGCTTAAGTCT+TGG + chr1_1:35322595-35322614 Msa0020390:CDS 45.0%
CGAGGATGAGCTTAAGTCTT+GGG + chr1_1:35322596-35322615 Msa0020390:CDS 45.0%
CTGATCAACCTTGACGAACT+CGG - chr1_1:35322625-35322644 None:intergenic 45.0%
ACAATTGTGCCTGCCTCTAT+TGG + chr1_1:35322924-35322943 Msa0020390:intron 45.0%
CAATTGTGCCTGCCTCTATT+GGG + chr1_1:35322925-35322944 Msa0020390:intron 45.0%
TGTTGAATTGCCTGCTCTTG+TGG + chr1_1:35322972-35322991 Msa0020390:intron 45.0%
AAACTAGCTGCAAGGGATCT+TGG + chr1_1:35323584-35323603 Msa0020390:intron 45.0%
TGATCATGTCTGCAACAGTC+TGG - chr1_1:35324131-35324150 None:intergenic 45.0%
GACTGTTGCAGACATGATCA+AGG + chr1_1:35324131-35324150 Msa0020390:CDS 45.0%
TGATTTCTCACCTGAGGAAG+AGG + chr1_1:35324197-35324216 Msa0020390:CDS 45.0%
!! GATGAGCTAATGCGTTGGTT+TGG + chr1_1:35324475-35324494 Msa0020390:three_prime_UTR 45.0%
!! TAATGCGTTGGTTTGGCATG+AGG + chr1_1:35324482-35324501 Msa0020390:three_prime_UTR 45.0%
!! AATGCGTTGGTTTGGCATGA+GGG + chr1_1:35324483-35324502 Msa0020390:three_prime_UTR 45.0%
ATTATAGTGCTCCTACGTGG+AGG - chr1_1:35322195-35322214 None:intergenic 45.0%
! ATCACTCTGAAGAGTTCCGA+CGG + chr1_1:35322393-35322412 Msa0020390:CDS 45.0%
! CAAGATCTTGCTGGTAACGT+TGG - chr1_1:35322514-35322533 None:intergenic 45.0%
CAACGTTACCAGCAAGATCT+TGG + chr1_1:35322512-35322531 Msa0020390:CDS 45.0%
TGCTGAAGACAAACCTAACG+AGG + chr1_1:35322578-35322597 Msa0020390:CDS 45.0%
GACTTAAGCTCATCCTCGTT+AGG - chr1_1:35322594-35322613 None:intergenic 45.0%
ACGAGGATGAGCTTAAGTCT+TGG + chr1_1:35322595-35322614 Msa0020390:CDS 45.0%
CGAGGATGAGCTTAAGTCTT+GGG + chr1_1:35322596-35322615 Msa0020390:CDS 45.0%
CTGATCAACCTTGACGAACT+CGG - chr1_1:35322625-35322644 None:intergenic 45.0%
ACAATTGTGCCTGCCTCTAT+TGG + chr1_1:35322924-35322943 Msa0020390:intron 45.0%
CAATTGTGCCTGCCTCTATT+GGG + chr1_1:35322925-35322944 Msa0020390:intron 45.0%
TGTTGAATTGCCTGCTCTTG+TGG + chr1_1:35322972-35322991 Msa0020390:intron 45.0%
AAACTAGCTGCAAGGGATCT+TGG + chr1_1:35323584-35323603 Msa0020390:intron 45.0%
TGATCATGTCTGCAACAGTC+TGG - chr1_1:35324131-35324150 None:intergenic 45.0%
GACTGTTGCAGACATGATCA+AGG + chr1_1:35324131-35324150 Msa0020390:CDS 45.0%
TGATTTCTCACCTGAGGAAG+AGG + chr1_1:35324197-35324216 Msa0020390:CDS 45.0%
!! GATGAGCTAATGCGTTGGTT+TGG + chr1_1:35324475-35324494 Msa0020390:three_prime_UTR 45.0%
!! TAATGCGTTGGTTTGGCATG+AGG + chr1_1:35324482-35324501 Msa0020390:three_prime_UTR 45.0%
!! AATGCGTTGGTTTGGCATGA+GGG + chr1_1:35324483-35324502 Msa0020390:three_prime_UTR 45.0%
!!! TTGTTTTTATTTAATTTAAA+TGG + chr1_1:35324014-35324033 Msa0020390:intron 5.0%
!!! TTGTTTTTATTTAATTTAAA+TGG + chr1_1:35324014-35324033 Msa0020390:intron 5.0%
AAAACTATGGGCGTGCGTGA+GGG - chr1_1:35322227-35322246 None:intergenic 50.0%
TAAAACTATGGGCGTGCGTG+AGG - chr1_1:35322228-35322247 None:intergenic 50.0%
! GAAGATGATTGCGCTGACAG+TGG + chr1_1:35322477-35322496 Msa0020390:CDS 50.0%
! TGCTGGTAACGTTGGGAAGA+GGG - chr1_1:35322506-35322525 None:intergenic 50.0%
! TTGCTGGTAACGTTGGGAAG+AGG - chr1_1:35322507-35322526 None:intergenic 50.0%
TACCAGCAAGATCTTGGCGA+AGG + chr1_1:35322518-35322537 Msa0020390:CDS 50.0%
TTGGGATTCCGAGTTCGTCA+AGG + chr1_1:35322614-35322633 Msa0020390:CDS 50.0%
! CGAGTTCGTCAAGGTTGATC+AGG + chr1_1:35322623-35322642 Msa0020390:CDS 50.0%
GCATATAGCCCAATAGAGGC+AGG - chr1_1:35322936-35322955 None:intergenic 50.0%
GATCAAGGGAAAGACACCAG+AGG + chr1_1:35324146-35324165 Msa0020390:CDS 50.0%
AATGTCTTGCGGATCTCCTC+TGG - chr1_1:35324165-35324184 None:intergenic 50.0%
TTTCTCACCTGAGGAAGAGG+AGG + chr1_1:35324200-35324219 Msa0020390:CDS 50.0%
AGGAAGAGGAGGAAGTTCGT+AGG + chr1_1:35324211-35324230 Msa0020390:CDS 50.0%
GGAAGAGGAGGAAGTTCGTA+GGG + chr1_1:35324212-35324231 Msa0020390:CDS 50.0%
AAAACTATGGGCGTGCGTGA+GGG - chr1_1:35322227-35322246 None:intergenic 50.0%
TAAAACTATGGGCGTGCGTG+AGG - chr1_1:35322228-35322247 None:intergenic 50.0%
! GAAGATGATTGCGCTGACAG+TGG + chr1_1:35322477-35322496 Msa0020390:CDS 50.0%
! TGCTGGTAACGTTGGGAAGA+GGG - chr1_1:35322506-35322525 None:intergenic 50.0%
! TTGCTGGTAACGTTGGGAAG+AGG - chr1_1:35322507-35322526 None:intergenic 50.0%
TACCAGCAAGATCTTGGCGA+AGG + chr1_1:35322518-35322537 Msa0020390:CDS 50.0%
TTGGGATTCCGAGTTCGTCA+AGG + chr1_1:35322614-35322633 Msa0020390:CDS 50.0%
! CGAGTTCGTCAAGGTTGATC+AGG + chr1_1:35322623-35322642 Msa0020390:CDS 50.0%
GCATATAGCCCAATAGAGGC+AGG - chr1_1:35322936-35322955 None:intergenic 50.0%
GATCAAGGGAAAGACACCAG+AGG + chr1_1:35324146-35324165 Msa0020390:CDS 50.0%
AATGTCTTGCGGATCTCCTC+TGG - chr1_1:35324165-35324184 None:intergenic 50.0%
TTTCTCACCTGAGGAAGAGG+AGG + chr1_1:35324200-35324219 Msa0020390:CDS 50.0%
AGGAAGAGGAGGAAGTTCGT+AGG + chr1_1:35324211-35324230 Msa0020390:CDS 50.0%
GGAAGAGGAGGAAGTTCGTA+GGG + chr1_1:35324212-35324231 Msa0020390:CDS 50.0%
AAACTATGGGCGTGCGTGAG+GGG - chr1_1:35322226-35322245 None:intergenic 55.0%
GACCTTCGAGGTCGATGAAG+CGG + chr1_1:35322419-35322438 Msa0020390:CDS 55.0%
AACCGCTTCATCGACCTCGA+AGG - chr1_1:35322424-35322443 None:intergenic 55.0%
GGTCGATGAAGCGGTTGCTT+TGG + chr1_1:35322428-35322447 Msa0020390:CDS 55.0%
CACCTTCGCCAAGATCTTGC+TGG - chr1_1:35322523-35322542 None:intergenic 55.0%
CATGTCTGCAACAGTCTGGC+AGG - chr1_1:35324127-35324146 None:intergenic 55.0%
CGAACTTCCTCCTCTTCCTC+AGG - chr1_1:35324210-35324229 None:intergenic 55.0%
AAACTATGGGCGTGCGTGAG+GGG - chr1_1:35322226-35322245 None:intergenic 55.0%
GACCTTCGAGGTCGATGAAG+CGG + chr1_1:35322419-35322438 Msa0020390:CDS 55.0%
AACCGCTTCATCGACCTCGA+AGG - chr1_1:35322424-35322443 None:intergenic 55.0%
GGTCGATGAAGCGGTTGCTT+TGG + chr1_1:35322428-35322447 Msa0020390:CDS 55.0%
CACCTTCGCCAAGATCTTGC+TGG - chr1_1:35322523-35322542 None:intergenic 55.0%
CATGTCTGCAACAGTCTGGC+AGG - chr1_1:35324127-35324146 None:intergenic 55.0%
CGAACTTCCTCCTCTTCCTC+AGG - chr1_1:35324210-35324229 None:intergenic 55.0%
TTCCGACGGTGAGACCTTCG+AGG + chr1_1:35322407-35322426 Msa0020390:CDS 60.0%
GACCTCGAAGGTCTCACCGT+CGG - chr1_1:35322412-35322431 None:intergenic 60.0%
TTCCGACGGTGAGACCTTCG+AGG + chr1_1:35322407-35322426 Msa0020390:CDS 60.0%
GACCTCGAAGGTCTCACCGT+CGG - chr1_1:35322412-35322431 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 35322188 35324589 35322188 ID=Msa0020390;Name=Msa0020390
chr1_1 mRNA 35322188 35324589 35322188 ID=Msa0020390-mRNA-1;Parent=Msa0020390;Name=Msa0020390-mRNA-1;_AED=0.26;_eAED=0.26;_QI=184|1|1|1|1|1|2|332|156
chr1_1 exon 35322188 35322668 35322188 ID=Msa0020390-mRNA-1:exon:11276;Parent=Msa0020390-mRNA-1
chr1_1 exon 35324084 35324589 35324084 ID=Msa0020390-mRNA-1:exon:11277;Parent=Msa0020390-mRNA-1
chr1_1 five_prime_UTR 35322188 35322371 35322188 ID=Msa0020390-mRNA-1:five_prime_utr;Parent=Msa0020390-mRNA-1
chr1_1 CDS 35322372 35322668 35322372 ID=Msa0020390-mRNA-1:cds;Parent=Msa0020390-mRNA-1
chr1_1 CDS 35324084 35324257 35324084 ID=Msa0020390-mRNA-1:cds;Parent=Msa0020390-mRNA-1
chr1_1 three_prime_UTR 35324258 35324589 35324258 ID=Msa0020390-mRNA-1:three_prime_utr;Parent=Msa0020390-mRNA-1
Gene Sequence

>Msa0020390

ATGTCTTCAACAACAAGAAAGATCACTCTGAAGAGTTCCGACGGTGAGACCTTCGAGGTCGATGAAGCGGTTGCTTTGGAATCTCAGACGATCAAGCATATGATCGAAGATGATTGCGCTGACAGTGGAATCCCTCTTCCCAACGTTACCAGCAAGATCTTGGCGAAGGTGATTGAGTATTGCAAGAAGCATGTTGACGCTGCTGCTGCTGAAGACAAACCTAACGAGGATGAGCTTAAGTCTTGGGATTCCGAGTTCGTCAAGGTTGATCAGGCTACGCTTTTTGATCTCATCTTGGCTGCTAATTACTTGAATATCAAGAGCTTGCTGGATCTTACCTGCCAGACTGTTGCAGACATGATCAAGGGAAAGACACCAGAGGAGATCCGCAAGACATTCAACATCAAGAATGATTTCTCACCTGAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCATTTGAATGA

Protein sequence

>Msa0020390

MSSTTRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVDAAAAEDKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE*