AlfalfaGEDB | Msa0169110

M. sativa cultivar zhongmu-4 / Msa0169110

KEGG: K16302
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169110	XP_003590679.1	89.266	708	32	5	111	809	1	673	0.0	1118

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169110	G7IEG1	89.266	708	32	5	111	809	1	673	0.0	1118

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0029850	Msa0169110	0.800068	1.714434e-48	-8.615850e-47
Msa0076700	Msa0169110	0.819939	8.923194e-53	-8.615850e-47
Msa0077180	Msa0169110	0.801617	8.275905e-49	-8.615850e-47
Msa0085720	Msa0169110	0.808651	2.789234e-50	-8.615850e-47
Msa0124550	Msa0169110	0.848924	4.493455e-60	-8.615850e-47
Msa0169110	Msa0169820	0.814051	1.875508e-51	-8.615850e-47
Msa0169110	Msa0183010	-0.812697	3.720557e-51	-8.615850e-47
Msa0169110	Msa0199800	-0.804513	2.083381e-49	-8.615850e-47
Msa0169110	Msa0230640	-0.811768	5.935291e-51	-8.615850e-47
Msa0169110	Msa1026410	0.800503	1.397738e-48	-8.615850e-47

Showing 1 to 10 of 16 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169110	MtrunA17_Chr1g0185771	89.266	708	32	5	111	809	1	673	0.0	1118

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0169110	AT4G02880.1	51.613	341	118	3	464	804	259	552	1.40e-89	293
Msa0169110	AT4G02880.1	63.043	46	17	0	111	156	1	46	1.59e-12	71.2
Msa0169110	AT4G02880.2	51.613	341	118	3	464	804	263	556	1.70e-89	293
Msa0169110	AT4G02880.2	35.938	128	79	2	111	236	1	127	4.73e-13	73.2
Msa0169110	AT1G03290.6	51.703	323	117	2	481	803	231	514	1.55e-83	276
Msa0169110	AT1G03290.6	71.698	53	15	0	111	163	1	53	1.40e-16	84.3
Msa0169110	AT1G03290.5	51.703	323	117	2	481	803	253	536	4.13e-83	276
Msa0169110	AT1G03290.5	71.698	53	15	0	111	163	1	53	1.65e-16	84.0
Msa0169110	AT1G03290.3	51.703	323	117	2	481	803	283	566	6.18e-83	276
Msa0169110	AT1G03290.3	71.698	53	15	0	111	163	1	53	1.89e-16	84.0

Showing 1 to 10 of 18 entries

Previous1 2Next

Find 196 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTGGCATCTAATGT+GGG	0.641802	1_4:+52227933	Msa0169110:CDS
AAAATCCATTTGATGTCTCC+TGG	0.449566	1_4:-52225374	None:intergenic
AAACAATCTGAATGAAGAGT+GGG	0.568659	1_4:+52225551	Msa0169110:CDS
AAACAGTGTCTCAAGTTCAG+GGG	0.648434	1_4:+52225682	Msa0169110:CDS
AAACGTAAATCATACCTTGG+AGG	0.656871	1_4:-52221472	None:intergenic
AAAGATGCAGAACTGGACTC+TGG	0.555288	1_4:+52228092	Msa0169110:CDS
AAAGCGAGGATGAAGGGAAA+AGG	0.505775	1_4:+52225109	Msa0169110:CDS
AAAGCTGCCGATTCTTCTTG+TGG	0.507371	1_4:+52225222	Msa0169110:CDS
AAAGTGAAAGTGAAGATGAA+GGG	0.512917	1_4:+52224797	Msa0169110:CDS
AAATCCATTTGATGTCTCCT+GGG	0.561238	1_4:-52225373	None:intergenic

Showing 1 to 10 of 196 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ACTTGCATATAGTTAGACTT+GGG	-	chr1_4:52221676-52221695	None:intergenic	30.0%
AACTTGCATATAGTTAGACT+TGG	-	chr1_4:52221677-52221696	None:intergenic	30.0%
ATGCAAGTTCAACTATATAC+CGG	+	chr1_4:52221688-52221707	Msa0169110:CDS	30.0%
TATGAATGAAAGTAACGAGA+GGG	-	chr1_4:52222072-52222091	None:intergenic	30.0%
TTATGAATGAAAGTAACGAG+AGG	-	chr1_4:52222073-52222092	None:intergenic	30.0%
CAGTGCAGAAAAACAAAATT+AGG	+	chr1_4:52222328-52222347	Msa0169110:intron	30.0%
ATCAACCGTCTATAATGTTA+TGG	+	chr1_4:52222877-52222896	Msa0169110:intron	30.0%
TCCTAAAATGACGTGAAATT+TGG	+	chr1_4:52223060-52223079	Msa0169110:intron	30.0%
CCTAAAATGACGTGAAATTT+GGG	+	chr1_4:52223061-52223080	Msa0169110:intron	30.0%
GTCAATATCTATAACAATCG+AGG	-	chr1_4:52223116-52223135	None:intergenic	30.0%

Showing 1 to 10 of 451 entries

Previous1 2 3 4 5…46Next

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	52221385	52228408	52221385	ID=Msa0169110;Name=Msa0169110
chr1_4	mRNA	52221385	52228408	52221385	ID=Msa0169110-mRNA-1;Parent=Msa0169110;Name=Msa0169110-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.66\|0.69\|0.76\|0.91\|0.84\|13\|243\|809
chr1_4	exon	52221385	52221479	52221385	ID=Msa0169110-mRNA-1:exon:15441;Parent=Msa0169110-mRNA-1
chr1_4	exon	52221565	52221779	52221565	ID=Msa0169110-mRNA-1:exon:15442;Parent=Msa0169110-mRNA-1
chr1_4	exon	52223515	52223582	52223515	ID=Msa0169110-mRNA-1:exon:15443;Parent=Msa0169110-mRNA-1
chr1_4	exon	52224530	52224692	52224530	ID=Msa0169110-mRNA-1:exon:15444;Parent=Msa0169110-mRNA-1
chr1_4	exon	52224794	52224991	52224794	ID=Msa0169110-mRNA-1:exon:15445;Parent=Msa0169110-mRNA-1
chr1_4	exon	52225106	52225857	52225106	ID=Msa0169110-mRNA-1:exon:15446;Parent=Msa0169110-mRNA-1
chr1_4	exon	52226091	52226264	52226091	ID=Msa0169110-mRNA-1:exon:15447;Parent=Msa0169110-mRNA-1
chr1_4	exon	52226379	52226495	52226379	ID=Msa0169110-mRNA-1:exon:15448;Parent=Msa0169110-mRNA-1
chr1_4	exon	52226692	52226913	52226692	ID=Msa0169110-mRNA-1:exon:15449;Parent=Msa0169110-mRNA-1
chr1_4	exon	52227117	52227173	52227117	ID=Msa0169110-mRNA-1:exon:15450;Parent=Msa0169110-mRNA-1
chr1_4	exon	52227358	52227404	52227358	ID=Msa0169110-mRNA-1:exon:15451;Parent=Msa0169110-mRNA-1
chr1_4	exon	52227803	52228283	52227803	ID=Msa0169110-mRNA-1:exon:15452;Parent=Msa0169110-mRNA-1
chr1_4	exon	52228325	52228408	52228325	ID=Msa0169110-mRNA-1:exon:15453;Parent=Msa0169110-mRNA-1
chr1_4	CDS	52221385	52221479	52221385	ID=Msa0169110-mRNA-1:cds;Parent=Msa0169110-mRNA-1
chr1_4	CDS	52221565	52221779	52221565	ID=Msa0169110-mRNA-1:cds;Parent=Msa0169110-mRNA-1
chr1_4	CDS	52223515	52223582	52223515	ID=Msa0169110-mRNA-1:cds;Parent=Msa0169110-mRNA-1
chr1_4	CDS	52224530	52224692	52224530	ID=Msa0169110-mRNA-1:cds;Parent=Msa0169110-mRNA-1
chr1_4	CDS	52224794	52224991	52224794	ID=Msa0169110-mRNA-1:cds;Parent=Msa0169110-mRNA-1
chr1_4	CDS	52225106	52225857	52225106	ID=Msa0169110-mRNA-1:cds;Parent=Msa0169110-mRNA-1
chr1_4	CDS	52226091	52226264	52226091	ID=Msa0169110-mRNA-1:cds;Parent=Msa0169110-mRNA-1
chr1_4	CDS	52226379	52226495	52226379	ID=Msa0169110-mRNA-1:cds;Parent=Msa0169110-mRNA-1
chr1_4	CDS	52226692	52226913	52226692	ID=Msa0169110-mRNA-1:cds;Parent=Msa0169110-mRNA-1
chr1_4	CDS	52227117	52227173	52227117	ID=Msa0169110-mRNA-1:cds;Parent=Msa0169110-mRNA-1
chr1_4	CDS	52227358	52227404	52227358	ID=Msa0169110-mRNA-1:cds;Parent=Msa0169110-mRNA-1
chr1_4	CDS	52227803	52228124	52227803	ID=Msa0169110-mRNA-1:cds;Parent=Msa0169110-mRNA-1
chr1_4	three_prime_UTR	52228125	52228283	52228125	ID=Msa0169110-mRNA-1:three_prime_utr;Parent=Msa0169110-mRNA-1
chr1_4	three_prime_UTR	52228325	52228408	52228325	ID=Msa0169110-mRNA-1:three_prime_utr;Parent=Msa0169110-mRNA-1

Gene Sequence

>Msa0169110

ATGTCCTCCAACGGCCTCCTGATGGAACACCACACTTTACGGAGACAGTTATTCATACACACGCTATGTAAGGGTGACTTAGCTTCACCTCCAAGACACATTTTGTCTCTTCGTGAAGACTCGCCGCCACTATACTGGAGCACATTCTGTTACCGTTGCCTGCATAAGTTCCTCACCGAACATATCAAGATTTTAAAAAACTACCCAAGTCTAACTATATGCAAGTTCAACTATATACCGGTTGCAGACTATATTGCTGGCCCCTGTGTAGCCCGTGTATGGATACGGGTGCGGGTACGATTCGATACGGATACGTCAAATCGTCTCATCATGGGTTTCAATTCTGTCTATAGATCTTTGCTCGATATTTTTCCCCAGGTGGATTCCAGGTTGTTGAGGGCAGTGGCTATTGAACACTCGAAGGATGCTGATATGGCTGCGGAAGTTGTTCTTACGGAAATCATCCCAGCAATTTCTAAAAAATTACTTCCAGCATCCCCTTCACGGGATACAAACCCTAGAGTCATAGTGAACCTGGAAGATGAAAGTGAAAGTGAAGATGAAGGGGAGATTTTGGCACGTCATAAGCTTGTTAAAAGTATGGATGTTGGCTCTTCTTCTTCACATTATGTACATCGGGAAATCATCAAATCTGCCAGCTCTTCTTCTGGCCCAGATCTGAATGTTACAGTAACTTATCCACAAGTTAAAAGCCCTGTAGCATTTATAAACCTTGAAGATGAAAGCGAGGATGAAGGGAAAAGGTTGGTGCAGTATCAACCTGTTGAAGATACTGATGTTGGGTCGTCTTCATCATCATTGGCATCATCATGTTCTAGACCTGTACAAATCATCAAAGCTGCCGATTCTTCTTGTGGACTGGATCTGAATGTAGCTCTTGATGACTCTACACTGTCAAATGCCAGTGAGCTAAATGATGAAACCAGTCAATTGCTTGGGGTAAATAATGATGGTAACTTAACTAGAGATATCTCTAGTGAAATTTCCCAGGAGACATCAAATGGATTTTGGCACGAAGCTAGTGAAAATTTTGATCAGGGACGACTTGTGGATGTCATTGTTGAAAATTTGGCATCTTCAGGTGTATATCACGTGTTGGAGACGGAACAGATAAATGTTGCAGAGGAGGCTGCTTCCATGACTAACAATGGCAATGGAACTTCAAACAATCTGAATGAAGAGTGGGTAGATTTTGTTCCTACGGCTGAAGATTATGATGCTACTATCTGCGATACAAGTCACGGATTGGAAAAATCTGAAACTGCCTTGATTGAGTCAGAAGACTCTGAAGTTCAAACAGTGTCTCAAGTTCAGGGGCTTACACTAAATGCTAAAGATCTTCAGACAGAATTTAATACTACACTAAATGCTGTAGATGAGATTGATGAGAATACGACTCTAGGCCAATATAATCCAGCCTGCAGTATTGATATGCTTGAGGAGACCATCGATGAAGCAAAAACAAATAAGAAAACCTTGTTTTCATCAATGGAATCTCTTATCAACTTGATGAGAGAGGTGGAACATCAGGAGAAACTTGCAGAGCAGGCCAATATAGCACCGACCACCGGAGGGTTTGATATTCTAGATAGGGTAGATGAGTATCAAGCCATGTTGGTGCACGCTAAAGAAGCAAATGACATGCATGCTGGGGAAATTTATGGCGAAAAGGCAATTCTGGCGACTGAGCTGAAGGAACTTCAATCACGTCTGTCCAGCTTGTCTGGTGAAAGGGATGAGTCTCTTGCAATTCTTGATGAGATGCGCCAAAGTCTTGAATCTCGATTAGCTGCAGCAGAAATGTTGAGGAAAGCGGCAGAGCTTGAAAAGCTTGAAAAAGAGGAATCGGCAAGGGCTGCACTTCTAGAACAAGAAGCAATGATGGAGAAGGTAGTACAGGAATCACGGAGACTACAGCAGGAAGCTGAAGAGAATTCAAAGGTTGCTCTTTCCTCTGCTTCCAAACCATTTCATTATATTTCTGAAAAGATAAGAGAGCAGAAGGAAGCAAGGGATGATAGCTCCCACCTTGCATGGGAGTTACGTGAGTTCCTGATGGATCGTGGGCAGGTTGTTGATACGTTGCAAGGAGAAATTTCTGTTATCTGTCAGGATATTAGACTTCTGAAAGAGAAATTTGATGCAAATCTTCCTTTGAGCAAATCATTCACAGCAAGTCAGACAAGTTGCATCTTAGCTTCTTCTGGTTCATCCCACAAAACTGTGGCATCTAATGTGGGTTCTGAGCATAGTGATTCTTCTGAAGTACTCAAGATCACCCAGGCAGCCCCCCCAATTGTTTTCAATGGTGGGGAAGAGGAGAGATCCAAGGCTGAACACAATGCTCTTATTGATGATGGGTGGGATATTTTTGACAAAGATGCAGAACTGGACTCTGGAGTTTTCTAA

Protein sequence

>Msa0169110

MSSNGLLMEHHTLRRQLFIHTLCKGDLASPPRHILSLREDSPPLYWSTFCYRCLHKFLTEHIKILKNYPSLTICKFNYIPVADYIAGPCVARVWIRVRVRFDTDTSNRLIMGFNSVYRSLLDIFPQVDSRLLRAVAIEHSKDADMAAEVVLTEIIPAISKKLLPASPSRDTNPRVIVNLEDESESEDEGEILARHKLVKSMDVGSSSSHYVHREIIKSASSSSGPDLNVTVTYPQVKSPVAFINLEDESEDEGKRLVQYQPVEDTDVGSSSSSLASSCSRPVQIIKAADSSCGLDLNVALDDSTLSNASELNDETSQLLGVNNDGNLTRDISSEISQETSNGFWHEASENFDQGRLVDVIVENLASSGVYHVLETEQINVAEEAASMTNNGNGTSNNLNEEWVDFVPTAEDYDATICDTSHGLEKSETALIESEDSEVQTVSQVQGLTLNAKDLQTEFNTTLNAVDEIDENTTLGQYNPACSIDMLEETIDEAKTNKKTLFSSMESLINLMREVEHQEKLAEQANIAPTTGGFDILDRVDEYQAMLVHAKEANDMHAGEIYGEKAILATELKELQSRLSSLSGERDESLAILDEMRQSLESRLAAAEMLRKAAELEKLEKEESARAALLEQEAMMEKVVQESRRLQQEAEENSKVALSSASKPFHYISEKIREQKEARDDSSHLAWELREFLMDRGQVVDTLQGEISVICQDIRLLKEKFDANLPLSKSFTASQTSCILASSGSSHKTVASNVGSEHSDSSEVLKITQAAPPIVFNGGEEERSKAEHNALIDDGWDIFDKDAELDSGVF*