AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077180 MtrunA17_Chr1g0186811 98.428 318 5 0 1 318 1 318 0.0 655
Msa0077180 MtrunA17_Chr1g0190121 82.445 319 55 1 1 318 1 319 0.0 569
Msa0077180 MtrunA17_Chr1g0167751 84.984 313 46 1 1 312 1 313 0.0 569
Msa0077180 MtrunA17_Chr7g0274931 83.386 319 52 1 1 318 1 319 0.0 567
Msa0077180 MtrunA17_Chr5g0436061 81.788 302 54 1 1 301 17 318 0.0 528
Msa0077180 MtrunA17_Chr8g0387541 74.448 317 80 1 1 316 1 317 0.0 515
Msa0077180 MtrunA17_Chr8g0334361 77.586 290 65 0 6 295 4 293 4.70e-178 495
Msa0077180 MtrunA17_Chr7g0272371 74.026 308 74 2 1 308 5 306 1.03e-173 484
Msa0077180 MtrunA17_Chr5g0445011 46.758 293 150 3 26 317 17 304 1.67e-94 283
Msa0077180 MtrunA17_Chr7g0268381 48.175 274 140 2 26 298 27 299 2.55e-94 283
Msa0077180 MtrunA17_Chr8g0364041 48.175 274 140 2 26 298 20 292 9.33e-93 279
Msa0077180 MtrunA17_Chr8g0378521 45.455 297 153 3 3 298 6 294 2.62e-92 278
Msa0077180 MtrunA17_Chr5g0415261 48.175 274 140 2 26 298 20 292 2.02e-91 275
Msa0077180 MtrunA17_Chr1g0165341 45.247 263 141 3 25 285 15 276 1.80e-89 270
Msa0077180 MtrunA17_Chr2g0322121 47.003 317 147 9 9 307 644 957 3.06e-82 269
Msa0077180 MtrunA17_Chr4g0025471 47.869 305 140 8 9 295 649 952 3.90e-82 268
Msa0077180 MtrunA17_Chr3g0097231 45.059 253 132 4 33 279 195 446 6.57e-73 233
Msa0077180 MtrunA17_Chr2g0330311 42.642 265 143 6 22 279 211 473 1.40e-66 218
Msa0077180 MtrunA17_Chr2g0330331 42.520 254 138 5 33 279 60 312 1.91e-61 200
Msa0077180 MtrunA17_Chr1g0196211 47.449 196 95 4 108 295 2 197 2.39e-51 171
Msa0077180 MtrunA17_Chr8g0369981 31.746 315 148 10 33 281 100 413 1.33e-38 142
Msa0077180 MtrunA17_Chr1g0196221 46.491 114 52 2 3 107 522 635 5.19e-24 103
Msa0077180 MtrunA17_Chr2g0330011 36.134 119 66 4 31 140 232 349 8.38e-16 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077180 AT2G39840.1 79.739 306 61 1 1 305 14 319 0.0 530
Msa0077180 AT5G43380.1 77.707 314 70 0 1 314 1 314 0.0 526
Msa0077180 AT5G43380.2 77.707 314 70 0 1 314 1 314 0.0 524
Msa0077180 AT5G43380.3 77.707 314 70 0 1 314 1 314 0.0 523
Msa0077180 AT1G64040.1 75.466 322 78 1 1 321 1 322 0.0 523
Msa0077180 AT2G29400.1 80.592 304 55 3 1 301 15 317 0.0 521
Msa0077180 AT5G59160.3 79.208 303 61 2 1 301 9 311 0.0 518
Msa0077180 AT5G59160.2 79.208 303 61 2 1 301 9 311 0.0 518
Msa0077180 AT5G59160.1 79.208 303 61 2 1 301 9 311 0.0 518
Msa0077180 AT3G46820.1 77.228 303 67 1 1 301 9 311 0.0 508
Msa0077180 AT4G11240.1 71.609 317 89 1 1 316 1 317 7.17e-179 498
Msa0077180 AT5G27840.4 76.190 294 68 1 1 294 9 300 1.99e-174 487
Msa0077180 AT5G27840.1 76.190 294 68 1 1 294 9 300 2.02e-174 487
Msa0077180 AT5G27840.2 76.190 294 68 1 1 294 9 300 2.25e-174 487
Msa0077180 AT5G27840.3 76.190 294 68 1 1 294 9 300 2.25e-174 487
Msa0077180 AT3G05580.1 76.190 294 68 1 1 294 9 300 4.33e-172 481
Msa0077180 AT3G05580.2 75.203 246 59 1 1 246 9 252 1.63e-139 396
Msa0077180 AT5G55260.1 47.099 293 149 3 26 317 17 304 8.71e-97 289
Msa0077180 AT2G42500.1 48.540 274 139 2 26 298 27 299 1.62e-95 286
Msa0077180 AT3G58500.1 47.810 274 141 2 26 298 27 299 6.91e-94 282
Msa0077180 AT1G69960.1 46.284 296 150 3 4 298 6 293 4.30e-93 280
Msa0077180 AT4G26720.1 45.230 283 146 2 26 299 17 299 7.01e-93 279
Msa0077180 AT1G10430.2 45.608 296 152 3 4 298 5 292 6.57e-92 277
Msa0077180 AT1G10430.1 45.608 296 152 3 4 298 5 292 6.57e-92 277
Msa0077180 AT1G59830.1 46.284 296 150 3 4 298 5 292 1.00e-91 276
Msa0077180 AT3G19980.1 45.247 263 141 3 25 285 15 276 4.76e-89 270
Msa0077180 AT1G50370.1 44.867 263 142 3 25 285 15 276 7.35e-89 269
Msa0077180 AT5G55260.2 41.317 334 149 4 26 317 17 345 2.86e-88 269
Msa0077180 AT4G03080.1 44.476 353 166 11 3 336 524 865 5.27e-84 272
Msa0077180 AT1G59830.2 49.004 251 119 3 4 253 5 247 9.32e-81 247
Msa0077180 AT2G27210.1 47.213 305 142 8 9 295 655 958 1.19e-80 265
Msa0077180 AT2G27210.2 47.213 305 142 8 9 295 650 953 1.74e-80 265
Msa0077180 AT1G08420.1 46.372 317 149 9 9 307 666 979 5.70e-80 263
Msa0077180 AT1G08420.2 46.372 317 149 9 9 307 661 974 5.99e-80 263
Msa0077180 AT1G03445.2 46.831 284 134 7 26 294 476 757 2.23e-79 258
Msa0077180 AT1G03445.1 46.831 284 134 7 26 294 476 757 2.64e-79 258
Msa0077180 AT2G42500.2 49.321 221 110 2 79 298 33 252 4.40e-75 233
Msa0077180 AT2G42810.1 44.664 253 133 4 33 279 197 448 4.41e-70 226
Msa0077180 AT2G42810.5 44.664 253 133 4 33 279 197 448 4.41e-70 226
Msa0077180 AT2G42810.4 44.664 253 133 4 33 279 197 448 4.41e-70 226
Msa0077180 AT2G42810.3 44.664 253 133 4 33 279 250 501 9.51e-70 227
Msa0077180 AT2G42810.2 44.664 253 133 4 33 279 251 502 1.07e-69 227
Msa0077180 AT2G42500.4 48.299 147 72 3 26 168 27 173 3.91e-44 150
Msa0077180 AT2G42500.5 47.403 154 75 4 26 175 27 178 1.13e-43 149
Msa0077180 AT2G42500.3 50.360 139 65 3 26 160 27 165 1.69e-43 148
Msa0077180 AT5G63870.1 30.473 338 168 11 33 303 52 389 7.30e-36 134
Msa0077180 AT5G63870.2 30.473 338 168 11 33 303 52 389 7.30e-36 134
Msa0077180 AT1G48120.1 29.412 340 168 9 31 300 628 965 4.47e-30 121
Msa0077180 AT5G63870.3 31.837 245 127 6 33 237 52 296 5.03e-29 114
Msa0077180 AT5G10900.2 33.023 215 120 8 52 245 222 433 1.81e-22 99.0
Msa0077180 AT5G10900.3 33.491 212 117 8 55 245 225 433 2.32e-22 98.6
Msa0077180 AT5G10900.1 33.491 212 117 8 55 245 225 433 2.50e-22 98.6

Find 66 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTCTCCACAGTAATT+AGG 0.241896 1_2:+53752146 None:intergenic
GTCTATTATGTGACCTCTTA+TGG 0.268848 1_2:-53752458 Msa0077180:CDS
AAATCCGTAGATACGGTTTA+TGG 0.280200 1_2:+53752668 None:intergenic
TGGAATTGAAATGATATTAT+AGG 0.288763 1_2:+53754332 None:intergenic
AATATACCACAGATCTTAAT+AGG 0.298021 1_2:+53753977 None:intergenic
TGATTTAAATCGTGTAATTC+AGG 0.302882 1_2:+53752522 None:intergenic
TAGAAAACAAATTAGAAATA+TGG 0.306123 1_2:-53754155 Msa0077180:exon
ATGATCTTGATTTGATTTGC+AGG 0.337705 1_2:-53752338 Msa0077180:CDS
AAAAGAGGAGAGAAGAATAA+AGG 0.348037 1_2:+53754366 None:intergenic
GGAATTGAAATGATATTATA+GGG 0.349365 1_2:+53754333 None:intergenic
CCGTGTGAAGTTCCTGAATC+TGG 0.374187 1_2:-53752480 Msa0077180:CDS
CGTGGAGTTTCATATACATT+TGG 0.381055 1_2:-53752393 Msa0077180:CDS
TAGTAGTGATGTTCGTGGTT+GGG 0.384770 1_2:-53752427 Msa0077180:CDS
AGAAACAATATGTCTTCTTC+TGG 0.391096 1_2:-53752751 Msa0077180:CDS
TTTGATTTGCAGGGCTCATC+AGG 0.392866 1_2:-53752328 Msa0077180:intron
ATTCGTGGTTACCCCTTAGA+AGG 0.394389 1_2:+53752697 None:intergenic
ATGTTACCAGGAGATATTCA+TGG 0.394694 1_2:-53752876 Msa0077180:intron
TTGAGATGAATGGGCTTGTA+AGG 0.394976 1_2:+53751132 None:intergenic
TTGTTGATGGTATTATCAAT+AGG 0.402079 1_2:-53754123 Msa0077180:CDS
TCACATAATAGACCAGATTC+AGG 0.431932 1_2:+53752468 None:intergenic
GACTAGCTATTGAGATGAAT+GGG 0.440946 1_2:+53751123 None:intergenic
GAAAGCTGAACCTGCTTCCC+TGG 0.443268 1_2:+53754079 None:intergenic
AGTAGTGATGTTCGTGGTTG+GGG 0.445269 1_2:-53752426 Msa0077180:CDS
TATATTCGAATGAATTCAAA+TGG 0.447104 1_2:+53754294 None:intergenic
ATGGAACGTGGAGTTGTTGA+TGG 0.454585 1_2:-53754136 Msa0077180:CDS
AAGAGGTAGACCAGGGAAGC+AGG 0.459465 1_2:-53754089 Msa0077180:CDS
AGACTAGCTATTGAGATGAA+TGG 0.483820 1_2:+53751122 None:intergenic
GGAGATACAATGTGAAGCTA+TGG 0.485510 1_2:-53752629 Msa0077180:CDS
CAACCACGAACATCACTACT+AGG 0.486128 1_2:+53752429 None:intergenic
TAGTAGTCCAACAAAATTCA+AGG 0.492608 1_2:-53752009 Msa0077180:intron
GCCTCTAGTTTCAAGAGATT+AGG 0.495023 1_2:+53754001 None:intergenic
AAGAAACTCTTTAACCCTAT+CGG 0.496948 1_2:+53752368 None:intergenic
CTAGTAGTGATGTTCGTGGT+TGG 0.504572 1_2:-53752428 Msa0077180:CDS
AAAGCTTATAAGAAGAGTAG+TGG 0.505031 1_2:+53754261 None:intergenic
TACTAGGATCAGACCATAAG+AGG 0.507611 1_2:+53752445 None:intergenic
TGATCTTGATTTGATTTGCA+GGG 0.513485 1_2:-53752337 Msa0077180:CDS
AATAGGTTACTTGAAGTAAG+AGG 0.517432 1_2:-53754106 Msa0077180:CDS
GTCAATATTCCGACCTTCTG+AGG 0.518139 1_2:-53752854 Msa0077180:CDS
AGGGCACGGGTGAACAAGCT+TGG 0.520779 1_2:-53751186 Msa0077180:CDS
ATATACATTTGGTGCCGATA+GGG 0.527545 1_2:-53752382 Msa0077180:CDS
CTAGTTTCAAGAGATTAGGC+TGG 0.529287 1_2:+53754005 None:intergenic
CATCATAAAATCCGTAGATA+CGG 0.530362 1_2:+53752661 None:intergenic
CTTGAAGTAAGAGGTAGACC+AGG 0.531943 1_2:-53754097 Msa0077180:CDS
CATATACATTTGGTGCCGAT+AGG 0.532156 1_2:-53752383 Msa0077180:CDS
TTGTTGCAGGTTGTGGAAGA+CGG 0.543349 1_2:-53752215 Msa0077180:intron
GTGCTTCCAAAGCTAAACTT+AGG 0.544982 1_2:+53752047 None:intergenic
CTCGAAAAGCCTCAGAAGGT+CGG 0.552388 1_2:+53752845 None:intergenic
GGTTTATGGAAGCACATTCG+TGG 0.557667 1_2:+53752682 None:intergenic
TGTGGAGAATTTGACAATGC+TGG 0.567360 1_2:-53752137 Msa0077180:CDS
TTTCAATTGTTTGCCTGTGG+CGG 0.574441 1_2:-53752589 Msa0077180:CDS
GCTTCCATAAACCGTATCTA+CGG 0.579276 1_2:-53752672 Msa0077180:CDS
GATCCTAGTAGTGATGTTCG+TGG 0.596697 1_2:-53752432 Msa0077180:CDS
ATAAAGGTGATGATGATACA+TGG 0.599974 1_2:+53754382 None:intergenic
TCATCAATGAGAGCCGCCAC+AGG 0.602243 1_2:+53752576 None:intergenic
GGTTGGGGAGAAAGCGAGCG+TGG 0.603320 1_2:-53752411 Msa0077180:CDS
TTGTTTCAATTGTTTGCCTG+TGG 0.606705 1_2:-53752592 Msa0077180:CDS
GAAAAGATTATCTGTATGCA+TGG 0.619510 1_2:-53752555 Msa0077180:CDS
CAAATTAGAAATATGGAACG+TGG 0.634209 1_2:-53754148 Msa0077180:exon
AATAAATAATTCGAGCGAGG+AGG 0.639135 1_2:+53752810 None:intergenic
CCAGATTCAGGAACTTCACA+CGG 0.648649 1_2:+53752480 None:intergenic
GAGGCACCTATTAAGATCTG+TGG 0.649585 1_2:-53753983 Msa0077180:intron
CGTACTCGAAAAGCCTCAGA+AGG 0.657790 1_2:+53752841 None:intergenic
TTAGGAGACTATGTTGATCG+CGG 0.661259 1_2:-53752786 Msa0077180:CDS
TTGAAGTAAGAGGTAGACCA+GGG 0.670591 1_2:-53754096 Msa0077180:CDS
GCCTAATCTCTTGAAACTAG+AGG 0.671584 1_2:-53754002 Msa0077180:CDS
AAGATTATCTGTATGCATGG+TGG 0.720136 1_2:-53752552 Msa0077180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTCTAATTTGTTTTCTA+AGG + chr1_2:53751357-53751376 None:intergenic 15.0%
!! TAGAAAACAAATTAGAAATA+TGG - chr1_2:53751357-53751376 Msa0077180:intron 15.0%
!!! TTGATTGATTTAATTAGTAT+AGG - chr1_2:53751590-53751609 Msa0077180:intron 15.0%
!! ATATGAAACAAGTTTATATA+TGG - chr1_2:53751805-53751824 Msa0077180:intron 15.0%
!! TCATACAAAGTAATTATATA+TGG - chr1_2:53751928-53751947 Msa0077180:intron 15.0%
!! AAAAAAATTATGTATTGTCT+AGG - chr1_2:53751963-53751982 Msa0077180:intron 15.0%
!! AAAAAATTATGTATTGTCTA+GGG - chr1_2:53751964-53751983 Msa0077180:intron 15.0%
!!! CTTTAAAAACTTTTATATTG+CGG - chr1_2:53752198-53752217 Msa0077180:CDS 15.0%
!! TTATGTATAAACTTAGAATT+TGG + chr1_2:53753253-53753272 None:intergenic 15.0%
!! TTCTAAGTTTATACATAATA+AGG - chr1_2:53753255-53753274 Msa0077180:intron 15.0%
!! TAAATATTTCTTTCTTATGA+TGG - chr1_2:53753931-53753950 Msa0077180:intron 15.0%
!! GGAATTGAAATGATATTATA+GGG + chr1_2:53751182-53751201 None:intergenic 20.0%
!! TGGAATTGAAATGATATTAT+AGG + chr1_2:53751183-53751202 None:intergenic 20.0%
!! TATATTCGAATGAATTCAAA+TGG + chr1_2:53751221-53751240 None:intergenic 20.0%
!!! AGGATTTAATTTGTATACAT+CGG - chr1_2:53751610-53751629 Msa0077180:intron 20.0%
!! TGAAACAAGAATGAATAATT+AGG + chr1_2:53752453-53752472 None:intergenic 20.0%
!!! TAAAAACTTTTTCCTTCTAA+GGG - chr1_2:53752803-53752822 Msa0077180:CDS 20.0%
!!! GATTTTATGATGAATGTAAA+AGG - chr1_2:53752862-53752881 Msa0077180:CDS 20.0%
!!! TTGTTGATGGTATTATCAAT+AGG - chr1_2:53751389-53751408 Msa0077180:intron 25.0%
! AATATACCACAGATCTTAAT+AGG + chr1_2:53751538-53751557 None:intergenic 25.0%
!! TAATTTGTATACATCGGTAA+AGG - chr1_2:53751616-53751635 Msa0077180:intron 25.0%
!!! TCTAAACTTGTTTTAATGTC+AGG + chr1_2:53751888-53751907 None:intergenic 25.0%
! CATCAGTTTAATTAGAATTG+TGG + chr1_2:53752408-53752427 None:intergenic 25.0%
! CAATTCTAATTAAACTGATG+TGG - chr1_2:53752408-53752427 Msa0077180:CDS 25.0%
! ATAAGTGTGAAACTAAACAT+AGG - chr1_2:53752529-53752548 Msa0077180:CDS 25.0%
! AGGTTAAATATGTTTGATCA+CGG + chr1_2:53752566-53752585 None:intergenic 25.0%
! TTTCATTTCTTTATGTTACC+AGG - chr1_2:53752624-53752643 Msa0077180:CDS 25.0%
! AAAAATAAATAATTCGAGCG+AGG + chr1_2:53752708-53752727 None:intergenic 25.0%
!!! CGCTCGAATTATTTATTTTT+AGG - chr1_2:53752708-53752727 Msa0077180:CDS 25.0%
!! CTTAGAAGGAAAAAGTTTTT+AGG + chr1_2:53752804-53752823 None:intergenic 25.0%
!!! CTAAAAACTTTTTCCTTCTA+AGG - chr1_2:53752802-53752821 Msa0077180:CDS 25.0%
!!! AAAAACTTTTTCCTTCTAAG+GGG - chr1_2:53752804-53752823 Msa0077180:CDS 25.0%
! TGATTTAAATCGTGTAATTC+AGG + chr1_2:53752993-53753012 None:intergenic 25.0%
!! TGTAATTTTCTTTTTGTTGC+AGG - chr1_2:53753284-53753303 Msa0077180:intron 25.0%
!! CAAAATACCTTGAATTTTGT+TGG + chr1_2:53753513-53753532 None:intergenic 25.0%
! GTTTGAATATGTAATCTCAA+GGG + chr1_2:53753637-53753656 None:intergenic 25.0%
! AGTTTGAATATGTAATCTCA+AGG + chr1_2:53753638-53753657 None:intergenic 25.0%
!! GATATGTAATGTTTGAAATG+TGG - chr1_2:53753830-53753849 Msa0077180:intron 25.0%
!!! GTGTCATTTTTCTTTTCTTT+TGG - chr1_2:53754002-53754021 Msa0077180:CDS 25.0%
! AGATGCATCTATCATATTAT+TGG - chr1_2:53754142-53754161 Msa0077180:exon 25.0%
! ATAAAGGTGATGATGATACA+TGG + chr1_2:53751133-53751152 None:intergenic 30.0%
AAAAGAGGAGAGAAGAATAA+AGG + chr1_2:53751149-53751168 None:intergenic 30.0%
AATGGAAAAAGAGAAGATAG+TGG + chr1_2:53751203-53751222 None:intergenic 30.0%
AAAGCTTATAAGAAGAGTAG+TGG + chr1_2:53751254-53751273 None:intergenic 30.0%
CAAATTAGAAATATGGAACG+TGG - chr1_2:53751364-53751383 Msa0077180:intron 30.0%
AATAGGTTACTTGAAGTAAG+AGG - chr1_2:53751406-53751425 Msa0077180:intron 30.0%
! TCATCGTAACAAGTTTTCTA+CGG + chr1_2:53751780-53751799 None:intergenic 30.0%
! CTTTTCATAGACTATAGACA+AGG - chr1_2:53751829-53751848 Msa0077180:intron 30.0%
TAGACAAGGTATATGAAACA+AGG - chr1_2:53751843-53751862 Msa0077180:intron 30.0%
AAATTATGTATTGTCTAGGG+CGG - chr1_2:53751967-53751986 Msa0077180:intron 30.0%
!! TAAAGGTGTTACATAGGTAA+AGG + chr1_2:53752142-53752161 None:intergenic 30.0%
CTTTATAGTTTAGCAAATCG+CGG + chr1_2:53752243-53752262 None:intergenic 30.0%
! ACTGTTGTTGTTATAGAAGT+AGG - chr1_2:53752299-53752318 Msa0077180:intron 30.0%
! CTGTTGTTGTTATAGAAGTA+GGG - chr1_2:53752300-53752319 Msa0077180:intron 30.0%
! ATTTTCTATCTGTGAAAACG+CGG - chr1_2:53752505-53752524 Msa0077180:CDS 30.0%
ATGAAACAAGACATTAGCAT+AGG + chr1_2:53752610-53752629 None:intergenic 30.0%
AGAAACAATATGTCTTCTTC+TGG - chr1_2:53752761-53752780 Msa0077180:CDS 30.0%
CATCATAAAATCCGTAGATA+CGG + chr1_2:53752854-53752873 None:intergenic 30.0%
GAAAAGATTATCTGTATGCA+TGG - chr1_2:53752957-53752976 Msa0077180:intron 30.0%
AAGAAACTCTTTAACCCTAT+CGG + chr1_2:53753147-53753166 None:intergenic 30.0%
!! ATGATCTTGATTTGATTTGC+AGG - chr1_2:53753174-53753193 Msa0077180:intron 30.0%
!! TGATCTTGATTTGATTTGCA+GGG - chr1_2:53753175-53753194 Msa0077180:intron 30.0%
TCAAATTCTCCACAGTAATT+AGG + chr1_2:53753369-53753388 None:intergenic 30.0%
! AACTTAGGCTTTTTATCAAG+AGG + chr1_2:53753453-53753472 None:intergenic 30.0%
! AAAAAGCCTAAGTTTAGCTT+TGG - chr1_2:53753459-53753478 Msa0077180:intron 30.0%
TAGTAGTCCAACAAAATTCA+AGG - chr1_2:53753503-53753522 Msa0077180:intron 30.0%
GTATATATCAGTTGTTCATG+AGG + chr1_2:53753709-53753728 None:intergenic 30.0%
AAAGAAATATTTAGCTGTCC+CGG + chr1_2:53753924-53753943 None:intergenic 30.0%
ATATTGTCAAACGCAATTGA+AGG - chr1_2:53753973-53753992 Msa0077180:intron 30.0%
GCATTATTGAATCTAGAAAC+AGG + chr1_2:53754109-53754128 None:intergenic 30.0%
TAGGGAAAGAGAAGAAAAAG+AGG + chr1_2:53751164-53751183 None:intergenic 35.0%
ATATGAAACAAGGCTATGTG+TGG - chr1_2:53751853-53751872 Msa0077180:intron 35.0%
ATTTGCCAAGATTCGAAGTT+TGG - chr1_2:53752115-53752134 Msa0077180:CDS 35.0%
!! AGGGATTAAAGGTGTTACAT+AGG + chr1_2:53752148-53752167 None:intergenic 35.0%
TTGTTATAGAAGTAGGGAGT+AGG - chr1_2:53752306-53752325 Msa0077180:intron 35.0%
TGTTATAGAAGTAGGGAGTA+GGG - chr1_2:53752307-53752326 Msa0077180:intron 35.0%
!!! ACTCTGAAAGCTCTGTTTTT+TGG - chr1_2:53752346-53752365 Msa0077180:CDS 35.0%
!!! TGAAAGCTCTGTTTTTTGGT+TGG - chr1_2:53752350-53752369 Msa0077180:CDS 35.0%
AGCATATATCAGACCCTTTA+TGG - chr1_2:53752379-53752398 Msa0077180:CDS 35.0%
AGAATTGTGGAGTCCATAAA+GGG + chr1_2:53752395-53752414 None:intergenic 35.0%
TAGAATTGTGGAGTCCATAA+AGG + chr1_2:53752396-53752415 None:intergenic 35.0%
AGTGTGAAACTAAACATAGG+TGG - chr1_2:53752532-53752551 Msa0077180:CDS 35.0%
CACAACAGTAATACATGTCA+AGG + chr1_2:53752586-53752605 None:intergenic 35.0%
CTTGACATGTATTACTGTTG+TGG - chr1_2:53752584-53752603 Msa0077180:CDS 35.0%
ATGTTACCAGGAGATATTCA+TGG - chr1_2:53752636-53752655 Msa0077180:CDS 35.0%
TATTGACCATGAATATCTCC+TGG + chr1_2:53752645-53752664 None:intergenic 35.0%
AATAAATAATTCGAGCGAGG+AGG + chr1_2:53752705-53752724 None:intergenic 35.0%
AAATCCGTAGATACGGTTTA+TGG + chr1_2:53752847-53752866 None:intergenic 35.0%
TTGTTTCAATTGTTTGCCTG+TGG - chr1_2:53752920-53752939 Msa0077180:intron 35.0%
AAGATTATCTGTATGCATGG+TGG - chr1_2:53752960-53752979 Msa0077180:intron 35.0%
TCACATAATAGACCAGATTC+AGG + chr1_2:53753047-53753066 None:intergenic 35.0%
GTCTATTATGTGACCTCTTA+TGG - chr1_2:53753054-53753073 Msa0077180:intron 35.0%
CGTGGAGTTTCATATACATT+TGG - chr1_2:53753119-53753138 Msa0077180:intron 35.0%
!! ATATACATTTGGTGCCGATA+GGG - chr1_2:53753130-53753149 Msa0077180:intron 35.0%
! TTTCTTTTTGTTGCAGGTTG+TGG - chr1_2:53753290-53753309 Msa0077180:intron 35.0%
! TTTTCAGCACCTAATTACTG+TGG - chr1_2:53753357-53753376 Msa0077180:intron 35.0%
TACACGGGAAAGTTGTAAAA+TGG + chr1_2:53753599-53753618 None:intergenic 35.0%
! ATTTTACAACTTTCCCGTGT+AGG - chr1_2:53753598-53753617 Msa0077180:intron 35.0%
GAATATGTAATCTCAAGGGA+CGG + chr1_2:53753633-53753652 None:intergenic 35.0%
! CAAAAAATGCTTGCTGAAAG+TGG + chr1_2:53753778-53753797 None:intergenic 35.0%
!!! CACTTTCAGCAAGCATTTTT+TGG - chr1_2:53753776-53753795 Msa0077180:intron 35.0%
GCGTTTGACAATATTGTACA+AGG + chr1_2:53753967-53753986 None:intergenic 35.0%
AGTTCGTTGAAACTTTCGTA+AGG + chr1_2:53754179-53754198 None:intergenic 35.0%
ATTGCTTTCTAACACCCTAA+CGG - chr1_2:53754237-53754256 Msa0077180:five_prime_UTR 35.0%
ACATCAGTTAACTACCGTTA+GGG + chr1_2:53754254-53754273 None:intergenic 35.0%
AACATCAGTTAACTACCGTT+AGG + chr1_2:53754255-53754274 None:intergenic 35.0%
!!! CATTCGCAAAGAGCATTTTT+TGG + chr1_2:53754284-53754303 None:intergenic 35.0%
CAAAAAATGCTCTTTGCGAA+TGG - chr1_2:53754282-53754301 Msa0077180:five_prime_UTR 35.0%
TTGAAGTAAGAGGTAGACCA+GGG - chr1_2:53751416-53751435 Msa0077180:intron 40.0%
CTAGTTTCAAGAGATTAGGC+TGG + chr1_2:53751510-53751529 None:intergenic 40.0%
GCCTAATCTCTTGAAACTAG+AGG - chr1_2:53751510-53751529 Msa0077180:intron 40.0%
! GCCTCTAGTTTCAAGAGATT+AGG + chr1_2:53751514-53751533 None:intergenic 40.0%
AAGGTCCAAACTTCGAATCT+TGG + chr1_2:53752123-53752142 None:intergenic 40.0%
!!! AGCTCTGTTTTTTGGTTGGT+AGG - chr1_2:53752354-53752373 Msa0077180:CDS 40.0%
TTAGGAGACTATGTTGATCG+CGG - chr1_2:53752726-53752745 Msa0077180:CDS 40.0%
GCTTCCATAAACCGTATCTA+CGG - chr1_2:53752840-53752859 Msa0077180:CDS 40.0%
GGAGATACAATGTGAAGCTA+TGG - chr1_2:53752883-53752902 Msa0077180:intron 40.0%
TTTCAATTGTTTGCCTGTGG+CGG - chr1_2:53752923-53752942 Msa0077180:intron 40.0%
TACTAGGATCAGACCATAAG+AGG + chr1_2:53753070-53753089 None:intergenic 40.0%
TAGTAGTGATGTTCGTGGTT+GGG - chr1_2:53753085-53753104 Msa0077180:intron 40.0%
!! CATATACATTTGGTGCCGAT+AGG - chr1_2:53753129-53753148 Msa0077180:intron 40.0%
TGTGGAGAATTTGACAATGC+TGG - chr1_2:53753375-53753394 Msa0077180:intron 40.0%
GTGCTTCCAAAGCTAAACTT+AGG + chr1_2:53753468-53753487 None:intergenic 40.0%
AATACACAACTTGCACTGAG+AGG - chr1_2:53753541-53753560 Msa0077180:intron 40.0%
ATACACAACTTGCACTGAGA+GGG - chr1_2:53753542-53753561 Msa0077180:intron 40.0%
! AAAATGCTTGCTGAAAGTGG+AGG + chr1_2:53753775-53753794 None:intergenic 40.0%
!! TTTGGTGCTAAAGCATGACA+TGG - chr1_2:53753794-53753813 Msa0077180:intron 40.0%
! GTTTGAAATGTGGCCAAAGT+TGG - chr1_2:53753840-53753859 Msa0077180:intron 40.0%
CTTTCTTTCCAAGCCAACTT+TGG + chr1_2:53753856-53753875 None:intergenic 40.0%
AATATTTAGCTGTCCCGGAA+GGG + chr1_2:53753919-53753938 None:intergenic 40.0%
AAATATTTAGCTGTCCCGGA+AGG + chr1_2:53753920-53753939 None:intergenic 40.0%
! TTGAGATGAATGGGCTTGTA+AGG + chr1_2:53754383-53754402 None:intergenic 40.0%
ATGGAACGTGGAGTTGTTGA+TGG - chr1_2:53751376-53751395 Msa0077180:intron 45.0%
CTTGAAGTAAGAGGTAGACC+AGG - chr1_2:53751415-53751434 Msa0077180:intron 45.0%
! GAGGCACCTATTAAGATCTG+TGG - chr1_2:53751529-53751548 Msa0077180:intron 45.0%
GCTTGCAAATACAGCTGATG+TGG - chr1_2:53752013-53752032 Msa0077180:CDS 45.0%
CGGTTGAGCTAAGGGATTAA+AGG + chr1_2:53752159-53752178 None:intergenic 45.0%
GTCTATGCAATGACATCGCT+CGG + chr1_2:53752179-53752198 None:intergenic 45.0%
GTAGGGAGTAGGGATCAAAT+TGG - chr1_2:53752317-53752336 Msa0077180:intron 45.0%
GTCAATATTCCGACCTTCTG+AGG - chr1_2:53752658-53752677 Msa0077180:CDS 45.0%
!!! CTTCTGAGGCTTTTCGAGTA+CGG - chr1_2:53752672-53752691 Msa0077180:CDS 45.0%
ATTCGTGGTTACCCCTTAGA+AGG + chr1_2:53752818-53752837 None:intergenic 45.0%
! GGTTTATGGAAGCACATTCG+TGG + chr1_2:53752833-53752852 None:intergenic 45.0%
CCAGATTCAGGAACTTCACA+CGG + chr1_2:53753035-53753054 None:intergenic 45.0%
GATCCTAGTAGTGATGTTCG+TGG - chr1_2:53753080-53753099 Msa0077180:intron 45.0%
CAACCACGAACATCACTACT+AGG + chr1_2:53753086-53753105 None:intergenic 45.0%
CTAGTAGTGATGTTCGTGGT+TGG - chr1_2:53753084-53753103 Msa0077180:intron 45.0%
AGTAGTGATGTTCGTGGTTG+GGG - chr1_2:53753086-53753105 Msa0077180:intron 45.0%
!! TTTGATTTGCAGGGCTCATC+AGG - chr1_2:53753184-53753203 Msa0077180:intron 45.0%
TTGTTGCAGGTTGTGGAAGA+CGG - chr1_2:53753297-53753316 Msa0077180:intron 45.0%
ACGGAATACAAAGCCTACAC+GGG + chr1_2:53753614-53753633 None:intergenic 45.0%
GACGGAATACAAAGCCTACA+CGG + chr1_2:53753615-53753634 None:intergenic 45.0%
AAATGTGGCCAAAGTTGGCT+TGG - chr1_2:53753845-53753864 Msa0077180:intron 45.0%
CAATCTCTGCTTTACCCTTC+CGG - chr1_2:53753902-53753921 Msa0077180:intron 45.0%
AATCTCTGCTTTACCCTTCC+GGG - chr1_2:53753903-53753922 Msa0077180:intron 45.0%
ACATCGCTCGGTTGAGCTAA+GGG + chr1_2:53752167-53752186 None:intergenic 50.0%
CTCGAAAAGCCTCAGAAGGT+CGG + chr1_2:53752670-53752689 None:intergenic 50.0%
CGTACTCGAAAAGCCTCAGA+AGG + chr1_2:53752674-53752693 None:intergenic 50.0%
CCGTGTGAAGTTCCTGAATC+TGG - chr1_2:53753032-53753051 Msa0077180:intron 50.0%
GGTGCTAAAGCATGACATGG+TGG - chr1_2:53753797-53753816 Msa0077180:intron 50.0%
AAGAGGTAGACCAGGGAAGC+AGG - chr1_2:53751423-53751442 Msa0077180:intron 55.0%
GAAAGCTGAACCTGCTTCCC+TGG + chr1_2:53751436-53751455 None:intergenic 55.0%
! TGTCTAGGGCGGTTGCAGTT+AGG - chr1_2:53751978-53751997 Msa0077180:intron 55.0%
GACATCGCTCGGTTGAGCTA+AGG + chr1_2:53752168-53752187 None:intergenic 55.0%
!!! CTGAGGCTTTTCGAGTACGG+TGG - chr1_2:53752675-53752694 Msa0077180:CDS 55.0%
TCATCAATGAGAGCCGCCAC+AGG + chr1_2:53752939-53752958 None:intergenic 55.0%
TTGCGAATGGCAGTTGCCGT+TGG - chr1_2:53754295-53754314 Msa0077180:five_prime_UTR 55.0%
!!! AGTTGCCGTTGGCGGGTTTT+AGG - chr1_2:53754306-53754325 Msa0077180:five_prime_UTR 55.0%
!!! GTTGCCGTTGGCGGGTTTTA+GGG - chr1_2:53754307-53754326 Msa0077180:five_prime_UTR 55.0%
CGAATGGCAGTTGCCGTTGG+CGG - chr1_2:53754298-53754317 Msa0077180:five_prime_UTR 60.0%
GAATGGCAGTTGCCGTTGGC+GGG - chr1_2:53754299-53754318 Msa0077180:five_prime_UTR 60.0%
CGTGCCCTAAAACCCGCCAA+CGG + chr1_2:53754314-53754333 None:intergenic 60.0%
!!! CGTTGGCGGGTTTTAGGGCA+CGG - chr1_2:53754312-53754331 Msa0077180:five_prime_UTR 60.0%
!!! GTTGGCGGGTTTTAGGGCAC+GGG - chr1_2:53754313-53754332 Msa0077180:five_prime_UTR 60.0%
AGGGCACGGGTGAACAAGCT+TGG - chr1_2:53754326-53754345 Msa0077180:five_prime_UTR 60.0%
GGTTGGGGAGAAAGCGAGCG+TGG - chr1_2:53753101-53753120 Msa0077180:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 53751129 53754405 53751129 ID=Msa0077180;Name=Msa0077180
chr1_2 mRNA 53751129 53754405 53751129 ID=Msa0077180-mRNA-1;Parent=Msa0077180;Name=Msa0077180-mRNA-1;_AED=0.21;_eAED=0.21;_QI=247|0.66|0.75|0.75|1|1|4|0|343
chr1_2 exon 53751129 53751206 53751129 ID=Msa0077180-mRNA-1:exon:16638;Parent=Msa0077180-mRNA-1
chr1_2 exon 53752010 53752228 53752010 ID=Msa0077180-mRNA-1:exon:16637;Parent=Msa0077180-mRNA-1
chr1_2 exon 53752329 53752888 53752329 ID=Msa0077180-mRNA-1:exon:16636;Parent=Msa0077180-mRNA-1
chr1_2 exon 53753984 53754405 53753984 ID=Msa0077180-mRNA-1:exon:16635;Parent=Msa0077180-mRNA-1
chr1_2 five_prime_UTR 53754159 53754405 53754159 ID=Msa0077180-mRNA-1:five_prime_utr;Parent=Msa0077180-mRNA-1
chr1_2 CDS 53753984 53754158 53753984 ID=Msa0077180-mRNA-1:cds;Parent=Msa0077180-mRNA-1
chr1_2 CDS 53752329 53752888 53752329 ID=Msa0077180-mRNA-1:cds;Parent=Msa0077180-mRNA-1
chr1_2 CDS 53752010 53752228 53752010 ID=Msa0077180-mRNA-1:cds;Parent=Msa0077180-mRNA-1
chr1_2 CDS 53751129 53751206 53751129 ID=Msa0077180-mRNA-1:cds;Parent=Msa0077180-mRNA-1
Gene Sequence

>Msa0077180

ATGGAACGTGGAGTTGTTGATGGTATTATCAATAGGTTACTTGAAGTAAGAGGTAGACCAGGGAAGCAGGTTCAGCTTTCTGAAGCAGAAATCAAACAGCTTTGTCTTGTCTCTAAAGATATCTTCATGAACCAGCCTAATCTCTTGAAACTAGAGGCACCTATTAAGATCTGTGGAGATATTCATGGTCAATATTCCGACCTTCTGAGGCTTTTCGAGTACGGTGGATTTCCTCCTCGCTCGAATTATTTATTTTTAGGAGACTATGTTGATCGCGGAAAACAAAGTCTAGAAACAATATGTCTTCTTCTGGCATATAAAATAAAATATCCTAAAAACTTTTTCCTTCTAAGGGGTAACCACGAATGTGCTTCCATAAACCGTATCTACGGATTTTATGATGAATGTAAAAGGAGATACAATGTGAAGCTATGGAAAATGTTTACAGATTGTTTCAATTGTTTGCCTGTGGCGGCTCTCATTGATGAAAAGATTATCTGTATGCATGGTGGACTCTCTCCTGAATTACACGATTTAAATCAGATAAAGAATTTGCGTCGTCCGTGTGAAGTTCCTGAATCTGGTCTATTATGTGACCTCTTATGGTCTGATCCTAGTAGTGATGTTCGTGGTTGGGGAGAAAGCGAGCGTGGAGTTTCATATACATTTGGTGCCGATAGGGTTAAAGAGTTTCTTCAAAAGCATGATCTTGATTTGATTTGCAGGGCTCATCAGGTTGTGGAAGACGGATACGAGTTCTTTGCGAATAGACAACTTGTAACAATCTTTTCAGCACCTAATTACTGTGGAGAATTTGACAATGCTGGTGCTATGATGACTGTAAATGAATCACTTGTGTGTTCTTTTCAAATACTGAAGCCTCTTGATAAAAAGCCTAAGTTTAGCTTTGGAAGCACAACTACAGTCAAGTCTAGTAGTCCAACAAAATTCAAGGGCACGGGTGAACAAGCTTGGCAGCTTAATGAACAATTATCAAAAACTATAACCTTACAAGCCCATTCATCTCAATAG

Protein sequence

>Msa0077180

MERGVVDGIINRLLEVRGRPGKQVQLSEAEIKQLCLVSKDIFMNQPNLLKLEAPIKICGDIHGQYSDLLRLFEYGGFPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPKNFFLLRGNHECASINRIYGFYDECKRRYNVKLWKMFTDCFNCLPVAALIDEKIICMHGGLSPELHDLNQIKNLRRPCEVPESGLLCDLLWSDPSSDVRGWGESERGVSYTFGADRVKEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVNESLVCSFQILKPLDKKPKFSFGSTTTVKSSSPTKFKGTGEQAWQLNEQLSKTITLQAHSSQ*