AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0199800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199800 MtrunA17_Chr2g0294481 98.969 97 1 0 1 97 1 97 8.64e-67 195
Msa0199800 MtrunA17_Chr8g0339811 94.737 95 5 0 1 95 1 95 1.86e-55 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199800 AT5G47890.1 74.227 97 25 0 1 97 1 97 3.54e-53 161

Find 53 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGATCAATATGGGCAGTTT+TGG 0.205012 2_1:+19180480 None:intergenic
ACTGCATTCACGGATCAATA+TGG 0.266079 2_1:+19180470 None:intergenic
TACCATATCTTGCCCACAAT+TGG 0.333397 2_1:+19180436 None:intergenic
ATTCACCGGCGACGGTGGTC+GGG 0.336554 2_1:+19182369 None:intergenic
CCCCAATTGTGGGCAAGATA+TGG 0.341515 2_1:-19180438 Msa0199800:intron
TGCTTATTCACGTTCTGAAA+TGG 0.351730 2_1:-19179514 Msa0199800:three_prime_UTR
CTTGTCTTGGAAATGAGATT+AGG 0.356000 2_1:-19179303 Msa0199800:three_prime_UTR
CTTTCAAGCTGATAAGTAAT+AGG 0.360216 2_1:-19179195 Msa0199800:three_prime_UTR
CATGCAACCTTTGCTTGTCT+TGG 0.367790 2_1:-19179316 Msa0199800:three_prime_UTR
AACCTTGCAGATGAGCTTGC+AGG 0.383491 2_1:+19180670 None:intergenic
TTCACCGGCGACGGTGGTCG+GGG 0.387999 2_1:+19182370 None:intergenic
ACCATATCTTGCCCACAATT+GGG 0.391447 2_1:+19180437 None:intergenic
TCTTATTACAATGTATCTCT+TGG 0.424547 2_1:-19179471 Msa0199800:three_prime_UTR
TTTGAAGGCACTCGAAGATC+TGG 0.433173 2_1:-19179569 Msa0199800:CDS
GGATCTCCGGACGGAGCTGC+GGG 0.433588 2_1:+19182392 None:intergenic
TAAGCAGTAATATCAAGCTT+TGG 0.441770 2_1:+19179531 None:intergenic
AATTCACCGGCGACGGTGGT+CGG 0.442121 2_1:+19182368 None:intergenic
GTTCAACTCCACTGCATTCA+CGG 0.460928 2_1:+19180460 None:intergenic
CTAGATTTGGGTGTTGAGAA+AGG 0.466386 2_1:-19179625 Msa0199800:intron
CTGCATTCACGGATCAATAT+GGG 0.474327 2_1:+19180471 None:intergenic
CAAGACAAGCAAAGGTTGCA+TGG 0.486987 2_1:+19179317 None:intergenic
CTATTACTTATCAGCTTGAA+AGG 0.489742 2_1:+19179196 None:intergenic
GGGATCTCCGGACGGAGCTG+CGG 0.492963 2_1:+19182391 None:intergenic
CGGACGGAGCTGCGGGTGGA+AGG 0.493867 2_1:+19182399 None:intergenic
CTTCCACCCGCAGCTCCGTC+CGG 0.494376 2_1:-19182398 Msa0199800:five_prime_UTR
TCTTGAAAATCGCATTTCGC+TGG 0.498934 2_1:-19182314 Msa0199800:intron
CTCATTTCCAAGACAAGCAA+AGG 0.502766 2_1:+19179309 None:intergenic
TGTTGAGAAAGGCATCAAAC+TGG 0.506700 2_1:-19179614 Msa0199800:CDS
TCTCCGGACGGAGCTGCGGG+TGG 0.513302 2_1:+19182395 None:intergenic
GATAAGTAATAGGTGGTAGC+AGG 0.524933 2_1:-19179185 Msa0199800:three_prime_UTR
TCTTATGTGATTAAGCAAGC+AGG 0.530209 2_1:-19179370 Msa0199800:three_prime_UTR
TGGAGTTGAACCCCAATTGT+GGG 0.534156 2_1:-19180448 Msa0199800:CDS
ATGAGCTTGCAGGTGATGAC+TGG 0.535904 2_1:+19180680 None:intergenic
TGCTTTGGAAAGTAATGGCA+TGG 0.538620 2_1:-19180750 Msa0199800:intron
CCATATCTTGCCCACAATTG+GGG 0.545870 2_1:+19180438 None:intergenic
GTCGGAAAATTCACCGGCGA+CGG 0.547939 2_1:+19182361 None:intergenic
CTCGAAGATCTGGTAAAAGC+AGG 0.549599 2_1:-19179559 Msa0199800:CDS
TATTACTTATCAGCTTGAAA+GGG 0.552058 2_1:+19179197 None:intergenic
TCACCGGCGACGGTGGTCGG+GGG 0.572004 2_1:+19182371 None:intergenic
GGAAAATTCACCGGCGACGG+TGG 0.573514 2_1:+19182364 None:intergenic
CTTATGTGATTAAGCAAGCA+GGG 0.576460 2_1:-19179369 Msa0199800:three_prime_UTR
AAGACAAGCAAAGGTTGCAT+GGG 0.589550 2_1:+19179318 None:intergenic
CAGCGAAAGGGTGAAGAAAG+TGG 0.590650 2_1:+19182339 None:intergenic
GTGGAGTTGAACCCCAATTG+TGG 0.601433 2_1:-19180449 Msa0199800:CDS
CACCTGCAAGCTCATCTGCA+AGG 0.602497 2_1:-19180672 Msa0199800:intron
GAGAAAGGCATCAAACTGGA+AGG 0.617748 2_1:-19179610 Msa0199800:CDS
TCGAGTGCCTTCAAAATCTG+TGG 0.622764 2_1:+19179577 None:intergenic
AAAGTGGTCGGAAAATTCAC+CGG 0.623772 2_1:+19182355 None:intergenic
CTTGAACTATAATCGTCAGA+AGG 0.627190 2_1:-19179146 Msa0199800:three_prime_UTR
GAAAGGGTGAAGAAAGTGGT+CGG 0.650039 2_1:+19182343 None:intergenic
ATATTGATCCGTGAATGCAG+TGG 0.663327 2_1:-19180468 Msa0199800:CDS
TCAAGCTGATAAGTAATAGG+TGG 0.664557 2_1:-19179192 Msa0199800:three_prime_UTR
TGGAAAGTAATGGCATGGAG+AGG 0.677012 2_1:-19180745 Msa0199800:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTATTAATGATTAAATTAT+AGG + chr2_1:19181908-19181927 None:intergenic 10.0%
!! ATAATGTGAAAGATTAAATT+AGG + chr2_1:19179349-19179368 None:intergenic 15.0%
!!! ATTAAGATTTTACAATTTCA+AGG + chr2_1:19179393-19179412 None:intergenic 15.0%
!! TATGAAGATAAAATTATTGT+TGG + chr2_1:19179861-19179880 None:intergenic 15.0%
!!! AATTAATGCTATGAAATTTT+AGG + chr2_1:19180934-19180953 None:intergenic 15.0%
!!! TTTTGTTGAAAAGAATTATA+AGG - chr2_1:19181031-19181050 Msa0199800:intron 15.0%
!! TAACATTGAAATGAATTTAA+GGG + chr2_1:19181341-19181360 None:intergenic 15.0%
!! TTAACATTGAAATGAATTTA+AGG + chr2_1:19181342-19181361 None:intergenic 15.0%
!! TAAATTCATTTCAATGTTAA+AGG - chr2_1:19181342-19181361 Msa0199800:intron 15.0%
!! TTAATCATTAATACTAGATT+TGG - chr2_1:19181913-19181932 Msa0199800:intron 15.0%
!! TAATCATTAATACTAGATTT+GGG - chr2_1:19181914-19181933 Msa0199800:intron 15.0%
!! TTGAATTAAAATTGAAAGAG+AGG + chr2_1:19179274-19179293 None:intergenic 20.0%
!!! AAAATAAGTCTTATCCAAAT+GGG - chr2_1:19179592-19179611 Msa0199800:CDS 20.0%
!!! ATTATCATTTTGCAATTTGA+GGG - chr2_1:19179634-19179653 Msa0199800:intron 20.0%
!!! TTATTTTGAAATTGATAAGG+TGG - chr2_1:19179658-19179677 Msa0199800:intron 20.0%
!!! TCTTTTTTACTTCTAGTTAA+TGG + chr2_1:19180054-19180073 None:intergenic 20.0%
!! TCAATAAGATGAATATTCTA+AGG - chr2_1:19180469-19180488 Msa0199800:CDS 20.0%
!! CAATAAGATGAATATTCTAA+GGG - chr2_1:19180470-19180489 Msa0199800:CDS 20.0%
!! AATAAGATGAATATTCTAAG+GGG - chr2_1:19180471-19180490 Msa0199800:CDS 20.0%
!! AATATTATAACTTTGTGCTT+TGG - chr2_1:19180786-19180805 Msa0199800:intron 20.0%
!!! TTACTATTTTTTCTTATCTC+AGG - chr2_1:19181006-19181025 Msa0199800:intron 20.0%
!!! TACTATTTTTTCTTATCTCA+GGG - chr2_1:19181007-19181026 Msa0199800:intron 20.0%
!!! AAATGAAAGAGATTTAAGAT+GGG + chr2_1:19181144-19181163 None:intergenic 20.0%
!! AAAATGAAAGAGATTTAAGA+TGG + chr2_1:19181145-19181164 None:intergenic 20.0%
!! GTATTAATGAATGGAAAAAT+TGG - chr2_1:19181612-19181631 Msa0199800:intron 20.0%
!! ATTATACACAACTTCTAATT+GGG + chr2_1:19181686-19181705 None:intergenic 20.0%
!!! TAATTTTCTTTATGCATTCA+AGG + chr2_1:19181760-19181779 None:intergenic 20.0%
!! ATACAAAAATTTACAGTATG+TGG + chr2_1:19181785-19181804 None:intergenic 20.0%
!! TGATTAAATTATAGGATGTT+AGG + chr2_1:19181900-19181919 None:intergenic 20.0%
! AATTAAAATTGAAAGAGAGG+TGG + chr2_1:19179271-19179290 None:intergenic 25.0%
! TACAATTTCAAGGAACATTA+TGG + chr2_1:19179383-19179402 None:intergenic 25.0%
! AAAATAAGCCTAATCTAAAC+GGG + chr2_1:19179478-19179497 None:intergenic 25.0%
! CAAAATAAGCCTAATCTAAA+CGG + chr2_1:19179479-19179498 None:intergenic 25.0%
!! CAAAATAAGTCTTATCCAAA+TGG - chr2_1:19179591-19179610 Msa0199800:CDS 25.0%
!! GATTATCATTTTGCAATTTG+AGG - chr2_1:19179633-19179652 Msa0199800:intron 25.0%
!! TTATCATTTTGCAATTTGAG+GGG - chr2_1:19179635-19179654 Msa0199800:intron 25.0%
!!! GGGTTATTTTGAAATTGATA+AGG - chr2_1:19179655-19179674 Msa0199800:intron 25.0%
! CTGAAAGATAAAAGTAAAAG+TGG - chr2_1:19179739-19179758 Msa0199800:intron 25.0%
! AGATAAAAGTAAAAGTGGAT+TGG - chr2_1:19179744-19179763 Msa0199800:intron 25.0%
! AAAAATAAGTCAATCCAAAC+AGG + chr2_1:19179792-19179811 None:intergenic 25.0%
!!! TTTTTTTTCCAGAAAGATGA+AGG - chr2_1:19180019-19180038 Msa0199800:intron 25.0%
!! ACTTCTAGTTAATGGTTTAT+TGG + chr2_1:19180046-19180065 None:intergenic 25.0%
!! TAGCTTACAAGTCTTTTAAT+TGG - chr2_1:19180094-19180113 Msa0199800:intron 25.0%
!!! ACACTGATTCAAATTCAAAA+AGG + chr2_1:19180273-19180292 None:intergenic 25.0%
!!! AACTCAAAAAGTGTTTACTT+TGG + chr2_1:19180442-19180461 None:intergenic 25.0%
! ATGTCCTAAGTAAAATTACA+GGG - chr2_1:19180495-19180514 Msa0199800:CDS 25.0%
!!! TATATTTTTTCCCCTATCTT+TGG - chr2_1:19180907-19180926 Msa0199800:intron 25.0%
!!! AAATTTTAGGTCCAAAGATA+GGG + chr2_1:19180921-19180940 None:intergenic 25.0%
!! AAAAGAATGCTTTGAGTTAT+TGG + chr2_1:19181368-19181387 None:intergenic 25.0%
!!! AATAACTCAAAGCATTCTTT+TGG - chr2_1:19181367-19181386 Msa0199800:intron 25.0%
!!! GAGATAAATTTGTTAGTATC+TGG - chr2_1:19181408-19181427 Msa0199800:intron 25.0%
! TATAATATTCTCATCTCTGA+AGG + chr2_1:19181488-19181507 None:intergenic 25.0%
! ATCCTTCAAGTATTAATGAA+TGG - chr2_1:19181603-19181622 Msa0199800:intron 25.0%
! TTCCATTCATTAATACTTGA+AGG + chr2_1:19181608-19181627 None:intergenic 25.0%
! CATTATACACAACTTCTAAT+TGG + chr2_1:19181687-19181706 None:intergenic 25.0%
! AGTTGTGTATAATGTCAATT+CGG - chr2_1:19181693-19181712 Msa0199800:intron 25.0%
!!! TAAGATTATTTTGCGTATTG+TGG - chr2_1:19181730-19181749 Msa0199800:intron 25.0%
! TCTTATTACAATGTATCTCT+TGG - chr2_1:19182080-19182099 Msa0199800:intron 25.0%
! TATTACTTATCAGCTTGAAA+GGG + chr2_1:19182357-19182376 None:intergenic 25.0%
AATCAAATTTGTCCCTTTGT+TGG - chr2_1:19179410-19179429 Msa0199800:three_prime_UTR 30.0%
!!! ATTAGGCTTATTTTGAGCTT+AGG - chr2_1:19179484-19179503 Msa0199800:three_prime_UTR 30.0%
!!! TTTTGAAATTGATAAGGTGG+TGG - chr2_1:19179661-19179680 Msa0199800:intron 30.0%
! GATACTGTTCTGCAATTTTA+AGG - chr2_1:19179692-19179711 Msa0199800:intron 30.0%
GTTCAAATTTCACACAATGA+GGG - chr2_1:19179766-19179785 Msa0199800:intron 30.0%
AAAGTATAAGCCAATCCAAA+CGG - chr2_1:19179968-19179987 Msa0199800:intron 30.0%
! AAACCTAGTGGTTTTTGAAT+GGG + chr2_1:19180207-19180226 None:intergenic 30.0%
AAAACCACTAGGTTTCTTAA+AGG - chr2_1:19180212-19180231 Msa0199800:intron 30.0%
CATGTCCTAAGTAAAATTAC+AGG - chr2_1:19180494-19180513 Msa0199800:CDS 30.0%
AGTGAGATTGAAAGTGAAAA+GGG + chr2_1:19180557-19180576 None:intergenic 30.0%
AAGGAATTGATTGCTTCTAT+AGG + chr2_1:19180583-19180602 None:intergenic 30.0%
!! CTGAGACTGATTTTTACTAA+CGG - chr2_1:19180634-19180653 Msa0199800:intron 30.0%
!! AATTTTAGGTCCAAAGATAG+GGG + chr2_1:19180920-19180939 None:intergenic 30.0%
!! GAAATTTTAGGTCCAAAGAT+AGG + chr2_1:19180922-19180941 None:intergenic 30.0%
!! TTTGGTGGTTAATTTGTTAG+AGG - chr2_1:19181385-19181404 Msa0199800:intron 30.0%
!! TTGGTGGTTAATTTGTTAGA+GGG - chr2_1:19181386-19181405 Msa0199800:intron 30.0%
! CATCATGTATAGTGTTCTTT+TGG - chr2_1:19181435-19181454 Msa0199800:intron 30.0%
ATTTGTTTGTATGAATCGCA+AGG - chr2_1:19181572-19181591 Msa0199800:intron 30.0%
ATGAATGGAAAAATTGGAGT+TGG - chr2_1:19181618-19181637 Msa0199800:intron 30.0%
! TTTTTAACCAACCGATAAAG+GGG + chr2_1:19181655-19181674 None:intergenic 30.0%
! GTTTTTAACCAACCGATAAA+GGG + chr2_1:19181656-19181675 None:intergenic 30.0%
!! TGTTTTTAACCAACCGATAA+AGG + chr2_1:19181657-19181676 None:intergenic 30.0%
GTATACTTACTCTTCAAAGA+TGG - chr2_1:19181801-19181820 Msa0199800:intron 30.0%
ACAAAATAATGCAGATGAGA+AGG + chr2_1:19181858-19181877 None:intergenic 30.0%
TAAGCAGTAATATCAAGCTT+TGG + chr2_1:19182023-19182042 None:intergenic 30.0%
!! CATTTTGAGTACATTTATCG+CGG - chr2_1:19182148-19182167 Msa0199800:intron 30.0%
CTATTACTTATCAGCTTGAA+AGG + chr2_1:19182358-19182377 None:intergenic 30.0%
CTTTCAAGCTGATAAGTAAT+AGG - chr2_1:19182356-19182375 Msa0199800:five_prime_UTR 30.0%
GTCAGAAGGTGAAAAAAAAT+AGG - chr2_1:19182419-19182438 Msa0199800:five_prime_UTR 30.0%
AGGTGAAAAAAAATAGGCAA+TGG - chr2_1:19182425-19182444 Msa0199800:five_prime_UTR 30.0%
!! ATTTTCAAGAAGCAGCGAAA+GGG + chr2_1:19179227-19179246 None:intergenic 35.0%
! TGTCCCTTTGTTGGAAATTT+TGG - chr2_1:19179419-19179438 Msa0199800:three_prime_UTR 35.0%
! GTCCCTTTGTTGGAAATTTT+GGG - chr2_1:19179420-19179439 Msa0199800:three_prime_UTR 35.0%
! TCCCTTTGTTGGAAATTTTG+GGG - chr2_1:19179421-19179440 Msa0199800:three_prime_UTR 35.0%
TCCCCAAAATTTCCAACAAA+GGG + chr2_1:19179425-19179444 None:intergenic 35.0%
TTCCCCAAAATTTCCAACAA+AGG + chr2_1:19179426-19179445 None:intergenic 35.0%
ATAATCGAACTAGTTCCTCA+GGG + chr2_1:19179619-19179638 None:intergenic 35.0%
!! AATTGATAAGGTGGTGGATT+AGG - chr2_1:19179667-19179686 Msa0199800:intron 35.0%
!! ATTGATAAGGTGGTGGATTA+GGG - chr2_1:19179668-19179687 Msa0199800:intron 35.0%
GGTTCAAATTTCACACAATG+AGG - chr2_1:19179765-19179784 Msa0199800:intron 35.0%
AGCTTATGCAAAACAGCTTA+TGG + chr2_1:19179948-19179967 None:intergenic 35.0%
AAGTATAAGCCAATCCAAAC+GGG - chr2_1:19179969-19179988 Msa0199800:intron 35.0%
TTATTGGTCCTTCATCTTTC+TGG + chr2_1:19180030-19180049 None:intergenic 35.0%
TTGATTCCTTCTCATTTGCA+TGG + chr2_1:19180162-19180181 None:intergenic 35.0%
AATCCCATTCAAAAACCACT+AGG - chr2_1:19180201-19180220 Msa0199800:intron 35.0%
! GAAACCTAGTGGTTTTTGAA+TGG + chr2_1:19180208-19180227 None:intergenic 35.0%
! ACAACCTTTAAGAAACCTAG+TGG + chr2_1:19180219-19180238 None:intergenic 35.0%
TGAATCAGTGTTGTCAATTG+CGG - chr2_1:19180282-19180301 Msa0199800:intron 35.0%
TTATCAAGTAGTGGCTATAG+CGG + chr2_1:19180355-19180374 None:intergenic 35.0%
! TACGAAGTCTTATCAAGTAG+TGG + chr2_1:19180364-19180383 None:intergenic 35.0%
! CTTGCCCTGTAATTTTACTT+AGG + chr2_1:19180502-19180521 None:intergenic 35.0%
CAGTGAGATTGAAAGTGAAA+AGG + chr2_1:19180558-19180577 None:intergenic 35.0%
!! CTTTGTGCTTTGGAAAGTAA+TGG - chr2_1:19180796-19180815 Msa0199800:intron 35.0%
TTAAGGAACTAAGGAGAGTA+TGG + chr2_1:19181206-19181225 None:intergenic 35.0%
AAATCCCAGTTAAGGAACTA+AGG + chr2_1:19181215-19181234 None:intergenic 35.0%
!! AACTCAAAGCATTCTTTTGG+TGG - chr2_1:19181370-19181389 Msa0199800:intron 35.0%
! AAGAACTTTTCCCCCTTTAT+CGG - chr2_1:19181641-19181660 Msa0199800:intron 35.0%
! TTTTAACCAACCGATAAAGG+GGG + chr2_1:19181654-19181673 None:intergenic 35.0%
!! TGCTTATTCACGTTCTGAAA+TGG - chr2_1:19182037-19182056 Msa0199800:intron 35.0%
TCTTATGTGATTAAGCAAGC+AGG - chr2_1:19182181-19182200 Msa0199800:intron 35.0%
CTTATGTGATTAAGCAAGCA+GGG - chr2_1:19182182-19182201 Msa0199800:intron 35.0%
CTTGTCTTGGAAATGAGATT+AGG - chr2_1:19182248-19182267 Msa0199800:intron 35.0%
TCAAGCTGATAAGTAATAGG+TGG - chr2_1:19182359-19182378 Msa0199800:five_prime_UTR 35.0%
CTTGAACTATAATCGTCAGA+AGG - chr2_1:19182405-19182424 Msa0199800:five_prime_UTR 35.0%
AAAGTGGTCGGAAAATTCAC+CGG + chr2_1:19179199-19179218 None:intergenic 40.0%
!! GATTTTCAAGAAGCAGCGAA+AGG + chr2_1:19179228-19179247 None:intergenic 40.0%
TCTTGAAAATCGCATTTCGC+TGG - chr2_1:19179237-19179256 Msa0199800:three_prime_UTR 40.0%
TAGAGATGCCCGTTTAGATT+AGG - chr2_1:19179467-19179486 Msa0199800:three_prime_UTR 40.0%
TAATCGAACTAGTTCCTCAG+GGG + chr2_1:19179618-19179637 None:intergenic 40.0%
GATAATCGAACTAGTTCCTC+AGG + chr2_1:19179620-19179639 None:intergenic 40.0%
ATGACACCATGCAAATGAGA+AGG - chr2_1:19180153-19180172 Msa0199800:intron 40.0%
TTCCTTAACTGCGAAACTGA+AGG - chr2_1:19180597-19180616 Msa0199800:intron 40.0%
TCCTTAACTGCGAAACTGAA+GGG - chr2_1:19180598-19180617 Msa0199800:intron 40.0%
! TTTTTACTAACGGCGTCTAG+TGG - chr2_1:19180644-19180663 Msa0199800:intron 40.0%
TATGCAAGCAAAACTACCAC+AGG + chr2_1:19180707-19180726 None:intergenic 40.0%
TTTCTCCTTGCCTTAAGATG+AGG - chr2_1:19180751-19180770 Msa0199800:intron 40.0%
TGAGACTTTGCCTCATCTTA+AGG + chr2_1:19180764-19180783 None:intergenic 40.0%
!! TGCTTTGGAAAGTAATGGCA+TGG - chr2_1:19180801-19180820 Msa0199800:intron 40.0%
! GGATCAATATGGGCAGTTTT+GGG + chr2_1:19181073-19181092 None:intergenic 40.0%
CTGCATTCACGGATCAATAT+GGG + chr2_1:19181083-19181102 None:intergenic 40.0%
ACTGCATTCACGGATCAATA+TGG + chr2_1:19181084-19181103 None:intergenic 40.0%
ATATTGATCCGTGAATGCAG+TGG - chr2_1:19181083-19181102 Msa0199800:intron 40.0%
ACCATATCTTGCCCACAATT+GGG + chr2_1:19181117-19181136 None:intergenic 40.0%
TACCATATCTTGCCCACAAT+TGG + chr2_1:19181118-19181137 None:intergenic 40.0%
GAATGTGAATGCAAATCACG+TGG + chr2_1:19181184-19181203 None:intergenic 40.0%
ACTCTCCTTAGTTCCTTAAC+TGG - chr2_1:19181207-19181226 Msa0199800:intron 40.0%
CTCTCCTTAGTTCCTTAACT+GGG - chr2_1:19181208-19181227 Msa0199800:intron 40.0%
GTTCCTTAACTGGGATTTGT+AGG - chr2_1:19181217-19181236 Msa0199800:intron 40.0%
CTTCCTACAAATCCCAGTTA+AGG + chr2_1:19181223-19181242 None:intergenic 40.0%
!! CTAGATTTGGGTGTTGAGAA+AGG - chr2_1:19181926-19181945 Msa0199800:intron 40.0%
!! TGTTGAGAAAGGCATCAAAC+TGG - chr2_1:19181937-19181956 Msa0199800:intron 40.0%
AAGACAAGCAAAGGTTGCAT+GGG + chr2_1:19182236-19182255 None:intergenic 40.0%
CTCATTTCCAAGACAAGCAA+AGG + chr2_1:19182245-19182264 None:intergenic 40.0%
GATAAGTAATAGGTGGTAGC+AGG - chr2_1:19182366-19182385 Msa0199800:five_prime_UTR 40.0%
GAAAGGGTGAAGAAAGTGGT+CGG + chr2_1:19179211-19179230 None:intergenic 45.0%
GACTTAAGACCCGTTTGGAT+TGG + chr2_1:19179981-19180000 None:intergenic 45.0%
!! AGCGGTGCTATAACACGTAA+CGG + chr2_1:19180337-19180356 None:intergenic 45.0%
ACCCTTCAGTTTCGCAGTTA+AGG + chr2_1:19180602-19180621 None:intergenic 45.0%
AAACTACCACAGGCATCTAG+TGG + chr2_1:19180697-19180716 None:intergenic 45.0%
CTTTGCCTCATCTTAAGGCA+AGG + chr2_1:19180759-19180778 None:intergenic 45.0%
TGGAAAGTAATGGCATGGAG+AGG - chr2_1:19180806-19180825 Msa0199800:intron 45.0%
! CGGATCAATATGGGCAGTTT+TGG + chr2_1:19181074-19181093 None:intergenic 45.0%
GTTCAACTCCACTGCATTCA+CGG + chr2_1:19181094-19181113 None:intergenic 45.0%
TGGAGTTGAACCCCAATTGT+GGG - chr2_1:19181103-19181122 Msa0199800:intron 45.0%
CCATATCTTGCCCACAATTG+GGG + chr2_1:19181116-19181135 None:intergenic 45.0%
! ACTTTTCCCCCTTTATCGGT+TGG - chr2_1:19181645-19181664 Msa0199800:intron 45.0%
!! GAGAAAGGCATCAAACTGGA+AGG - chr2_1:19181941-19181960 Msa0199800:intron 45.0%
! GACAGAGCCACAGATTTTGA+AGG - chr2_1:19181967-19181986 Msa0199800:intron 45.0%
TCGAGTGCCTTCAAAATCTG+TGG + chr2_1:19181977-19181996 None:intergenic 45.0%
!! TTTGAAGGCACTCGAAGATC+TGG - chr2_1:19181982-19182001 Msa0199800:intron 45.0%
CTCGAAGATCTGGTAAAAGC+AGG - chr2_1:19181992-19182011 Msa0199800:intron 45.0%
CAAGACAAGCAAAGGTTGCA+TGG + chr2_1:19182237-19182256 None:intergenic 45.0%
CATGCAACCTTTGCTTGTCT+TGG - chr2_1:19182235-19182254 Msa0199800:intron 45.0%
!!! ATAATATTTAAAATTAGTTT+TGG + chr2_1:19181526-19181545 None:intergenic 5.0%
CAGCGAAAGGGTGAAGAAAG+TGG + chr2_1:19179215-19179234 None:intergenic 50.0%
TCACACAATGAGGGCCTGTT+TGG - chr2_1:19179775-19179794 Msa0199800:intron 50.0%
CCAACGACTTAAGACCCGTT+TGG + chr2_1:19179986-19180005 None:intergenic 50.0%
CCAAACGGGTCTTAAGTCGT+TGG - chr2_1:19179983-19180002 Msa0199800:intron 50.0%
GTGTTGTCAATTGCGGATCG+TGG - chr2_1:19180289-19180308 Msa0199800:intron 50.0%
TTACTGCCACTAGATGCCTG+TGG - chr2_1:19180688-19180707 Msa0199800:CDS 50.0%
ATGAGCTTGCAGGTGATGAC+TGG + chr2_1:19180874-19180893 None:intergenic 50.0%
AACCTTGCAGATGAGCTTGC+AGG + chr2_1:19180884-19180903 None:intergenic 50.0%
GTGGAGTTGAACCCCAATTG+TGG - chr2_1:19181102-19181121 Msa0199800:intron 50.0%
CCCCAATTGTGGGCAAGATA+TGG - chr2_1:19181113-19181132 Msa0199800:intron 50.0%
GTCGGAAAATTCACCGGCGA+CGG + chr2_1:19179193-19179212 None:intergenic 55.0%
CTTATCCAAATGGGCCCCTG+AGG - chr2_1:19179601-19179620 Msa0199800:CDS 55.0%
TAGTTCCTCAGGGGCCCATT+TGG + chr2_1:19179609-19179628 None:intergenic 55.0%
CACCTGCAAGCTCATCTGCA+AGG - chr2_1:19180879-19180898 Msa0199800:intron 55.0%
GTAGCCTAGTGAGTCGGGTT+GGG + chr2_1:19181464-19181483 None:intergenic 55.0%
AAGGCGTAGCCTAGTGAGTC+GGG + chr2_1:19181469-19181488 None:intergenic 55.0%
! GAAGGCGTAGCCTAGTGAGT+CGG + chr2_1:19181470-19181489 None:intergenic 55.0%
AATTCACCGGCGACGGTGGT+CGG + chr2_1:19179186-19179205 None:intergenic 60.0%
GGAAAATTCACCGGCGACGG+TGG + chr2_1:19179190-19179209 None:intergenic 60.0%
GTGTCCCAACCCGACTCACT+AGG - chr2_1:19181457-19181476 Msa0199800:intron 60.0%
CGTAGCCTAGTGAGTCGGGT+TGG + chr2_1:19181465-19181484 None:intergenic 60.0%
ATTCACCGGCGACGGTGGTC+GGG + chr2_1:19179185-19179204 None:intergenic 65.0%
CTTCCACCCGCAGCTCCGTC+CGG - chr2_1:19179153-19179172 Msa0199800:three_prime_UTR 70.0%
GGATCTCCGGACGGAGCTGC+GGG + chr2_1:19179162-19179181 None:intergenic 70.0%
GGGATCTCCGGACGGAGCTG+CGG + chr2_1:19179163-19179182 None:intergenic 70.0%
GTGGTCGGGGGATCTCCGGA+CGG + chr2_1:19179171-19179190 None:intergenic 70.0%
GACGGTGGTCGGGGGATCTC+CGG + chr2_1:19179175-19179194 None:intergenic 70.0%
TTCACCGGCGACGGTGGTCG+GGG + chr2_1:19179184-19179203 None:intergenic 70.0%
CGGACGGAGCTGCGGGTGGA+AGG + chr2_1:19179155-19179174 None:intergenic 75.0%
TCTCCGGACGGAGCTGCGGG+TGG + chr2_1:19179159-19179178 None:intergenic 75.0%
GATCCCCCGACCACCGTCGC+CGG - chr2_1:19179177-19179196 Msa0199800:three_prime_UTR 75.0%
TCACCGGCGACGGTGGTCGG+GGG + chr2_1:19179183-19179202 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 19179101 19182472 19179101 ID=Msa0199800;Name=Msa0199800
chr2_1 mRNA 19179101 19182472 19179101 ID=Msa0199800-mRNA-1;Parent=Msa0199800;Name=Msa0199800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=160|1|1|1|0.66|0.75|4|442|97
chr2_1 exon 19179101 19179643 19179101 ID=Msa0199800-mRNA-1:exon:7962;Parent=Msa0199800-mRNA-1
chr2_1 exon 19180439 19180545 19180439 ID=Msa0199800-mRNA-1:exon:7961;Parent=Msa0199800-mRNA-1
chr2_1 exon 19180673 19180760 19180673 ID=Msa0199800-mRNA-1:exon:7960;Parent=Msa0199800-mRNA-1
chr2_1 exon 19182315 19182472 19182315 ID=Msa0199800-mRNA-1:exon:7959;Parent=Msa0199800-mRNA-1
chr2_1 five_prime_UTR 19182315 19182472 19182315 ID=Msa0199800-mRNA-1:five_prime_utr;Parent=Msa0199800-mRNA-1
chr2_1 five_prime_UTR 19180759 19180760 19180759 ID=Msa0199800-mRNA-1:five_prime_utr;Parent=Msa0199800-mRNA-1
chr2_1 CDS 19180673 19180758 19180673 ID=Msa0199800-mRNA-1:cds;Parent=Msa0199800-mRNA-1
chr2_1 CDS 19180439 19180545 19180439 ID=Msa0199800-mRNA-1:cds;Parent=Msa0199800-mRNA-1
chr2_1 CDS 19179543 19179643 19179543 ID=Msa0199800-mRNA-1:cds;Parent=Msa0199800-mRNA-1
chr2_1 three_prime_UTR 19179101 19179542 19179101 ID=Msa0199800-mRNA-1:three_prime_utr;Parent=Msa0199800-mRNA-1
Gene Sequence

>Msa0199800

ATGGCATGGAGAGGACAACTTTCAAAGAACATCAAAGAGCTTCGATTTCTGATGTGCCAGTCATCACCTGCAAGCTCATCTGCAAGGGCTTTTGTTGAAAAGAATTATAAGGAACTAAAGACATTGAACCCAAAACTGCCCATATTGATCCGTGAATGCAGTGGAGTTGAACCCCAATTGTGGGCAAGATATGATTTGGGTGTTGAGAAAGGCATCAAACTGGAAGGCATGACAGAGCCACAGATTTTGAAGGCACTCGAAGATCTGGTAAAAGCAGGACAATCCAAAGCTTGA

Protein sequence

>Msa0199800

MAWRGQLSKNIKELRFLMCQSSPASSSARAFVEKNYKELKTLNPKLPILIRECSGVEPQLWARYDLGVEKGIKLEGMTEPQILKALEDLVKAGQSKA*