Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172420 | AET01531.2 | 93.939 | 33 | 2 | 0 | 83 | 115 | 1 | 33 | 9.09e-12 | 72.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172420 | G7LGQ1 | 93.939 | 33 | 2 | 0 | 83 | 115 | 1 | 33 | 4.34e-12 | 72.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0172420 | Msa0213360 | 0.803152 | 3.995215e-49 | -8.615850e-47 |
| Msa0172420 | Msa0386580 | 0.814806 | 1.277191e-51 | -8.615850e-47 |
| Msa0172420 | Msa0604210 | 0.801691 | 7.992151e-49 | -8.615850e-47 |
| Msa0172420 | Msa0652940 | 0.817110 | 3.908004e-52 | -8.615850e-47 |
| Msa0172420 | Msa0663040 | 0.818673 | 1.733933e-52 | -8.615850e-47 |
| Msa0172420 | Msa0766630 | 0.802055 | 6.727297e-49 | -8.615850e-47 |
| Msa0172420 | Msa0901500 | 0.816182 | 6.308633e-52 | -8.615850e-47 |
| Msa0172420 | Msa0966060 | 0.809936 | 1.478652e-50 | -8.615850e-47 |
| Msa0172420 | Msa1116260 | 0.802450 | 5.577556e-49 | -8.615850e-47 |
| Msa0172420 | Msa1403480 | 0.812986 | 3.216938e-51 | -8.615850e-47 |
| Msa0172420 | Msa1411020 | 0.818498 | 1.899955e-52 | -8.615850e-47 |
| Msa0172420 | Msa1420490 | 0.828447 | 8.943485e-55 | -8.615850e-47 |
| Msa0172420 | Msa1423390 | 0.826451 | 2.693672e-54 | -8.615850e-47 |
| Msa0172420 | Msa1424290 | 0.816542 | 5.242376e-52 | -8.615850e-47 |
| Msa0172420 | Msa1434350 | 0.817329 | 3.489566e-52 | -8.615850e-47 |
| Msa0172420 | Msa1439320 | 0.811120 | 8.205351e-51 | -8.615850e-47 |
| Msa0172420 | Msa1440370 | 0.826195 | 3.099057e-54 | -8.615850e-47 |
| Msa0172420 | Msa1440810 | 0.828735 | 7.622854e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATTTGGTCTTCACTATT+AGG | 0.172065 | 1_4:-57475068 | Msa0172420:three_prime_UTR |
| GTGACTCGATTATGTGTTTA+AGG | 0.189417 | 1_4:-57475106 | Msa0172420:three_prime_UTR |
| AAGGGTATTAGAAGTTATTT+TGG | 0.199008 | 1_4:-57475813 | Msa0172420:three_prime_UTR |
| CTCTAATACTACTGATAAAT+TGG | 0.215990 | 1_4:+57475444 | None:intergenic |
| TTGAATTATAGGACTGATAT+TGG | 0.218116 | 1_4:-57478561 | Msa0172420:intron |
| CTCTGGGCATGTATATATTT+AGG | 0.223918 | 1_4:-57476844 | Msa0172420:intron |
| AATTGCTTAGGAGGTGATTC+AGG | 0.229982 | 1_4:-57477437 | Msa0172420:CDS |
| AAAACCTTGGCCATGTATTT+TGG | 0.231084 | 1_4:-57475613 | Msa0172420:three_prime_UTR |
| ATAGCAGCTGTAGTCAAATA+TGG | 0.296933 | 1_4:+57477407 | None:intergenic |
| TGCTATCAACATATGATATA+AGG | 0.299792 | 1_4:+57478500 | None:intergenic |
| TCTAGACTATGATACTATTA+TGG | 0.332461 | 1_4:-57477363 | Msa0172420:intron |
| TTCATATTTAACCATATAGT+TGG | 0.334022 | 1_4:+57477458 | None:intergenic |
| TAGAAGGGTTGTCAAGTTCT+TGG | 0.334689 | 1_4:-57477513 | Msa0172420:CDS |
| TGTGAGACGGAGGGATGATT+TGG | 0.338071 | 1_4:-57475362 | Msa0172420:three_prime_UTR |
| ACAAACAATTGGCAGTTCAT+TGG | 0.348902 | 1_4:-57476654 | Msa0172420:three_prime_UTR |
| GCTCTGTTGTTCCAACTATA+TGG | 0.356150 | 1_4:-57477469 | Msa0172420:CDS |
| TCACACATTGGACATGTAAC+CGG | 0.365151 | 1_4:+57475692 | None:intergenic |
| TCGATCTGCAGTGCGAATAA+AGG | 0.372260 | 1_4:-57476614 | Msa0172420:intron |
| TTCGTTGAAACGAAAAGGTC+TGG | 0.378571 | 1_4:-57475580 | Msa0172420:three_prime_UTR |
| ATTGTTTGCAGCTGCTGCAC+TGG | 0.391528 | 1_4:+57475475 | None:intergenic |
| GCTGAACAATGCAAAACAAT+AGG | 0.405307 | 1_4:+57476887 | None:intergenic |
| TCATTTATACAAAATTACTC+TGG | 0.406659 | 1_4:-57476861 | Msa0172420:three_prime_UTR |
| AGTATCATAGTCTAGATATC+TGG | 0.427566 | 1_4:+57477370 | None:intergenic |
| AATGTTTGTTAGCCTTTGCT+TGG | 0.428312 | 1_4:-57478147 | Msa0172420:CDS |
| TGTTGAGATATGCACTGATT+TGG | 0.431092 | 1_4:-57475082 | Msa0172420:three_prime_UTR |
| TACTCTGGCTGCCGATATGC+AGG | 0.438528 | 1_4:-57475641 | Msa0172420:three_prime_UTR |
| TTCTCGGTGAAACAAACAAT+TGG | 0.447293 | 1_4:-57476665 | Msa0172420:three_prime_UTR |
| AGGACTGATATTGGAACTGA+TGG | 0.455835 | 1_4:-57478552 | Msa0172420:CDS |
| AGAGGAAGATGAGCTTATAG+TGG | 0.464001 | 1_4:-57475923 | Msa0172420:three_prime_UTR |
| TGGTTAAATATGAATTGCTT+AGG | 0.464708 | 1_4:-57477449 | Msa0172420:CDS |
| TGGGGAATGTGGTATGGTAT+TGG | 0.465152 | 1_4:-57478532 | Msa0172420:CDS |
| CGGTGGACTAAGCTAGCAAA+TGG | 0.466984 | 1_4:-57475416 | Msa0172420:three_prime_UTR |
| GCAGGGGCAAAACAATTTCT+CGG | 0.484102 | 1_4:-57476681 | Msa0172420:intron |
| CATTTATACAAAATTACTCT+GGG | 0.486329 | 1_4:-57476860 | Msa0172420:three_prime_UTR |
| CACACATTGGACATGTAACC+GGG | 0.490723 | 1_4:+57475693 | None:intergenic |
| ATTGTGAGAGTAAGAGTGCA+AGG | 0.491317 | 1_4:-57475832 | Msa0172420:three_prime_UTR |
| CTTTGATGAGGGGTAATTTG+CGG | 0.493350 | 1_4:-57475733 | Msa0172420:three_prime_UTR |
| TTGTTGAGAAGAGTGGAGAG+AGG | 0.494677 | 1_4:-57475760 | Msa0172420:three_prime_UTR |
| CACAATGAAACAATCATCAA+TGG | 0.496221 | 1_4:+57478118 | None:intergenic |
| GATGAGCTTATAGTGGGTAG+AGG | 0.505466 | 1_4:-57475916 | Msa0172420:three_prime_UTR |
| ATGGCTTCGTTGAAACGAAA+AGG | 0.508337 | 1_4:-57475585 | Msa0172420:three_prime_UTR |
| CGTGTGAAGTACTATCTGAT+TGG | 0.517671 | 1_4:-57475517 | Msa0172420:three_prime_UTR |
| ACTAATAAGCATGAAGCAAG+AGG | 0.519062 | 1_4:-57475231 | Msa0172420:three_prime_UTR |
| AGAGAGGATGTCTTTGATGA+GGG | 0.523329 | 1_4:-57475744 | Msa0172420:three_prime_UTR |
| GCATGAAGCAAGAGGGTGAT+GGG | 0.528389 | 1_4:-57475223 | Msa0172420:three_prime_UTR |
| ATTGCTTAGGAGGTGATTCA+GGG | 0.531769 | 1_4:-57477436 | Msa0172420:CDS |
| TCATCCCTCCGTCTCACAAA+CGG | 0.537750 | 1_4:+57475367 | None:intergenic |
| AACTGATGGGGAATGTGGTA+TGG | 0.538552 | 1_4:-57478538 | Msa0172420:CDS |
| GCATATAAACATGTAAGTGT+TGG | 0.542890 | 1_4:-57476934 | Msa0172420:CDS |
| TCACTTTCTGCGGCATCACA+AGG | 0.543005 | 1_4:+57475788 | None:intergenic |
| GAGAGAGGATGTCTTTGATG+AGG | 0.549638 | 1_4:-57475745 | Msa0172420:three_prime_UTR |
| TATGCAGGATTTGAAAACCT+TGG | 0.552274 | 1_4:-57475626 | Msa0172420:three_prime_UTR |
| AACAAAAGCTTCACTTTCTG+CGG | 0.553345 | 1_4:+57475778 | None:intergenic |
| TCGTTGAAACGAAAAGGTCT+GGG | 0.554472 | 1_4:-57475579 | Msa0172420:three_prime_UTR |
| GTAGGGGATTATGATCGAAA+CGG | 0.555742 | 1_4:-57476956 | Msa0172420:intron |
| TTAAATATGAATTGCTTAGG+AGG | 0.557541 | 1_4:-57477446 | Msa0172420:CDS |
| GCCATATGCACCAAAATACA+TGG | 0.562367 | 1_4:+57475603 | None:intergenic |
| TATGAATGTCATCTGTACTC+TGG | 0.571713 | 1_4:-57475656 | Msa0172420:three_prime_UTR |
| ATTGGAACTGATGGGGAATG+TGG | 0.573791 | 1_4:-57478543 | Msa0172420:CDS |
| AATACTACTGATAAATTGGT+CGG | 0.574406 | 1_4:+57475448 | None:intergenic |
| ATATCATATGTTGATAGCAA+AGG | 0.579023 | 1_4:-57478496 | Msa0172420:intron |
| GAGGAAGATGAGCTTATAGT+GGG | 0.585730 | 1_4:-57475922 | Msa0172420:three_prime_UTR |
| GGACTGATATTGGAACTGAT+GGG | 0.590343 | 1_4:-57478551 | Msa0172420:CDS |
| TTGTGAGAGTAAGAGTGCAA+GGG | 0.590422 | 1_4:-57475831 | Msa0172420:three_prime_UTR |
| AGCATGAAGCAAGAGGGTGA+TGG | 0.592902 | 1_4:-57475224 | Msa0172420:three_prime_UTR |
| CGACATGGCCGTTTGTGAGA+CGG | 0.595338 | 1_4:-57475375 | Msa0172420:three_prime_UTR |
| TCAGTAGTATTAGAGTTCGA+CGG | 0.599651 | 1_4:-57475436 | Msa0172420:three_prime_UTR |
| TGCACCAAAATACATGGCCA+AGG | 0.609430 | 1_4:+57475609 | None:intergenic |
| GAGAGGATGTCTTTGATGAG+GGG | 0.621959 | 1_4:-57475743 | Msa0172420:three_prime_UTR |
| GTTGTCAAGTTCTTGGTCAG+CGG | 0.622055 | 1_4:-57477506 | Msa0172420:CDS |
| TTACTCTCACAATTTCTGCA+AGG | 0.624286 | 1_4:+57475842 | None:intergenic |
| CAATGGAAGTAACCAAGCAA+AGG | 0.627352 | 1_4:+57478135 | None:intergenic |
| GACTGATATTGGAACTGATG+GGG | 0.627898 | 1_4:-57478550 | Msa0172420:CDS |
| TACTCAAGGAGAGTTCATCA+AGG | 0.638404 | 1_4:-57475318 | Msa0172420:three_prime_UTR |
| CTAATAAGCATGAAGCAAGA+GGG | 0.643567 | 1_4:-57475230 | Msa0172420:three_prime_UTR |
| TAGCGTGTAAGAAATACTCA+AGG | 0.649858 | 1_4:-57475332 | Msa0172420:three_prime_UTR |
| CATGGCCGTTTGTGAGACGG+AGG | 0.656952 | 1_4:-57475372 | Msa0172420:three_prime_UTR |
| GCTAAAATACAATGTCGACA+TGG | 0.704540 | 1_4:-57475390 | Msa0172420:three_prime_UTR |
| ATGGCCGTTTGTGAGACGGA+GGG | 0.704636 | 1_4:-57475371 | Msa0172420:three_prime_UTR |
| GTAGTATTAGAGTTCGACGG+TGG | 0.726720 | 1_4:-57475433 | Msa0172420:three_prime_UTR |
| ATATAGTTGGAACAACAGAG+CGG | 0.798770 | 1_4:+57477471 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTGTTTATTTTTAAAA+GGG | - | chr1_4:57475339-57475358 | Msa0172420:three_prime_UTR | 10.0% |
| !! | AATTTATTCTGATAATTATA+TGG | - | chr1_4:57476509-57476528 | Msa0172420:intron | 10.0% |
| !!! | ATTTTTTTTTTTGCTTTTTT+AGG | - | chr1_4:57477827-57477846 | Msa0172420:intron | 10.0% |
| !! | AAATATTAATCCATTATATT+GGG | + | chr1_4:57478729-57478748 | None:intergenic | 10.0% |
| !! | AAAATATTAATCCATTATAT+TGG | + | chr1_4:57478730-57478749 | None:intergenic | 10.0% |
| !!! | ATTAATATTTTACTGAATAA+GGG | - | chr1_4:57478739-57478758 | Msa0172420:intron | 10.0% |
| !!! | GATGTTTGTTTATTTTTAAA+AGG | - | chr1_4:57475338-57475357 | Msa0172420:three_prime_UTR | 15.0% |
| !!! | TTTTTATTATTTTCTTCTCT+AGG | - | chr1_4:57475831-57475850 | Msa0172420:three_prime_UTR | 15.0% |
| !!! | TATTTTCAAAGATTCTTTTA+TGG | - | chr1_4:57477690-57477709 | Msa0172420:intron | 15.0% |
| !! | ATAATTATAAATATTGCGAT+AGG | - | chr1_4:57478082-57478101 | Msa0172420:intron | 15.0% |
| !! | TAATTATAAATATTGCGATA+GGG | - | chr1_4:57478083-57478102 | Msa0172420:intron | 15.0% |
| !!! | AACATTAAGTTTTGAATTTT+AGG | - | chr1_4:57478435-57478454 | Msa0172420:intron | 15.0% |
| !!! | AGATTTAAATTTTTAGTTAG+TGG | - | chr1_4:57478694-57478713 | Msa0172420:intron | 15.0% |
| !!! | GATTAATATTTTACTGAATA+AGG | - | chr1_4:57478738-57478757 | Msa0172420:intron | 15.0% |
| !! | ACATGAAAAAAATAAAACAT+TGG | + | chr1_4:57478831-57478850 | None:intergenic | 15.0% |
| !! | CAATTATAATTAACAAATCA+AGG | + | chr1_4:57479475-57479494 | None:intergenic | 15.0% |
| !!! | TAATATTTTTTCTTTGTCTA+TGG | - | chr1_4:57479956-57479975 | Msa0172420:intron | 15.0% |
| !! | TTTAATGAATTTATAGTTCA+AGG | - | chr1_4:57480144-57480163 | Msa0172420:intron | 15.0% |
| !! | TTAATGAATTTATAGTTCAA+GGG | - | chr1_4:57480145-57480164 | Msa0172420:intron | 15.0% |
| !!! | AGATGTTTTATATAAAATGT+AGG | - | chr1_4:57480313-57480332 | Msa0172420:intron | 15.0% |
| !!! | GTTTTTTTAATCATACTTAT+TGG | - | chr1_4:57480408-57480427 | Msa0172420:intron | 15.0% |
| !! | AGGATAATCATAAAAATTAA+TGG | - | chr1_4:57481422-57481441 | Msa0172420:intron | 15.0% |
| !!! | TTTTGATTAAACAAAAGATG+AGG | + | chr1_4:57475074-57475093 | None:intergenic | 20.0% |
| !! | GTTTAATCAAAAATCATGAT+CGG | - | chr1_4:57475082-57475101 | Msa0172420:three_prime_UTR | 20.0% |
| !!! | GTTTTTTCGTTTTTAAGTTA+TGG | - | chr1_4:57475300-57475319 | Msa0172420:three_prime_UTR | 20.0% |
| !!! | GTTATGGTTTTATTTTGAAT+TGG | - | chr1_4:57475316-57475335 | Msa0172420:three_prime_UTR | 20.0% |
| !! | AATCAACAAATTTCAGTAAA+TGG | + | chr1_4:57475471-57475490 | None:intergenic | 20.0% |
| !! | CAATACTTAATTTACCATAT+AGG | + | chr1_4:57476293-57476312 | None:intergenic | 20.0% |
| !!! | GTGCAAAATTTTGATATTTT+GGG | + | chr1_4:57476543-57476562 | None:intergenic | 20.0% |
| !! | ATAGAATGAAGATTGTATAT+AGG | + | chr1_4:57476672-57476691 | None:intergenic | 20.0% |
| !!! | TTCTAAAGAATATCAAAAAG+TGG | + | chr1_4:57476833-57476852 | None:intergenic | 20.0% |
| !!! | CTTACAACATTTTAACAATT+TGG | + | chr1_4:57476921-57476940 | None:intergenic | 20.0% |
| !! | TAACAACTAAAACTGATATT+GGG | + | chr1_4:57476951-57476970 | None:intergenic | 20.0% |
| !! | TTAACAACTAAAACTGATAT+TGG | + | chr1_4:57476952-57476971 | None:intergenic | 20.0% |
| !!! | GATGCATTGTTATTTTTTTA+TGG | - | chr1_4:57477725-57477744 | Msa0172420:intron | 20.0% |
| !! | CTTGAAATCAAATAGAATAA+AGG | + | chr1_4:57477807-57477826 | None:intergenic | 20.0% |
| !!! | AAATTTTCATTTACTTTCTG+AGG | - | chr1_4:57478117-57478136 | Msa0172420:CDS | 20.0% |
| !! | ATTAAAGTAGAACAATTTGA+AGG | - | chr1_4:57478281-57478300 | Msa0172420:intron | 20.0% |
| !! | TGTTTCATTGTGTTAAAAAT+TGG | - | chr1_4:57478363-57478382 | Msa0172420:intron | 20.0% |
| !! | GTTTCATTGTGTTAAAAATT+GGG | - | chr1_4:57478364-57478383 | Msa0172420:intron | 20.0% |
| !! | AATAAAGTATGCTAAACAAT+TGG | - | chr1_4:57478501-57478520 | Msa0172420:CDS | 20.0% |
| !! | TTCATATTTAACCATATAGT+TGG | + | chr1_4:57479015-57479034 | None:intergenic | 20.0% |
| !! | AAATGATTAAGAAGCAAATT+TGG | - | chr1_4:57479288-57479307 | Msa0172420:intron | 20.0% |
| !! | ATATACACATAATGAGAAAA+TGG | + | chr1_4:57479405-57479424 | None:intergenic | 20.0% |
| !! | TCATTTATACAAAATTACTC+TGG | - | chr1_4:57479609-57479628 | Msa0172420:intron | 20.0% |
| !! | CATTTATACAAAATTACTCT+GGG | - | chr1_4:57479610-57479629 | Msa0172420:intron | 20.0% |
| !! | TTAAAATTACTCAAATAGAG+TGG | + | chr1_4:57479694-57479713 | None:intergenic | 20.0% |
| !!! | GTATTGAATTGATTTATCTA+AGG | - | chr1_4:57479997-57480016 | Msa0172420:intron | 20.0% |
| !! | ATGTAATTAGATCATTAGAT+AGG | + | chr1_4:57480095-57480114 | None:intergenic | 20.0% |
| !! | ATCTTCATATCAATAGTTTA+AGG | - | chr1_4:57480118-57480137 | Msa0172420:intron | 20.0% |
| !! | TCTTCATATCAATAGTTTAA+GGG | - | chr1_4:57480119-57480138 | Msa0172420:intron | 20.0% |
| !! | TAATGAATTTATAGTTCAAG+GGG | - | chr1_4:57480146-57480165 | Msa0172420:intron | 20.0% |
| !!! | TTTTTAATCATACTTATTGG+CGG | - | chr1_4:57480411-57480430 | Msa0172420:intron | 20.0% |
| !! | GTTAAAAATAATCTGTTGTT+TGG | - | chr1_4:57480518-57480537 | Msa0172420:intron | 20.0% |
| !! | ATTCTGGAAAAACAAAAACT+TGG | + | chr1_4:57475161-57475180 | None:intergenic | 25.0% |
| ! | ATTGTCATGACATAAATTTG+GGG | + | chr1_4:57475238-57475257 | None:intergenic | 25.0% |
| ! | GATTGTCATGACATAAATTT+GGG | + | chr1_4:57475239-57475258 | None:intergenic | 25.0% |
| ! | TGATTGTCATGACATAAATT+TGG | + | chr1_4:57475240-57475259 | None:intergenic | 25.0% |
| ! | AACGAAAAAACACAGTAAAA+AGG | + | chr1_4:57475291-57475310 | None:intergenic | 25.0% |
| !!! | TGAAATTTGTTGATTGTTGT+AGG | - | chr1_4:57475476-57475495 | Msa0172420:three_prime_UTR | 25.0% |
| !!! | AAGCTGTTTTTGTGTTTTAA+AGG | - | chr1_4:57476052-57476071 | Msa0172420:intron | 25.0% |
| !! | TCTTTTGTTAACTTCCTATA+TGG | - | chr1_4:57476276-57476295 | Msa0172420:intron | 25.0% |
| !!! | GAAATTATGGTTCTACATTT+TGG | - | chr1_4:57476380-57476399 | Msa0172420:intron | 25.0% |
| !!! | GTATGATTCTATTTTGATTC+TGG | - | chr1_4:57476459-57476478 | Msa0172420:intron | 25.0% |
| !!! | GGTGCAAAATTTTGATATTT+TGG | + | chr1_4:57476544-57476563 | None:intergenic | 25.0% |
| ! | AAACTTATCCTGTAATGTTT+AGG | + | chr1_4:57476565-57476584 | None:intergenic | 25.0% |
| ! | GAAATTTACCAAGAATTGAT+GGG | + | chr1_4:57476864-57476883 | None:intergenic | 25.0% |
| ! | AGAAATTTACCAAGAATTGA+TGG | + | chr1_4:57476865-57476884 | None:intergenic | 25.0% |
| ! | AGAAATTTGCAAAAGAAACA+TGG | + | chr1_4:57476895-57476914 | None:intergenic | 25.0% |
| !!! | AAACACCAGATTTTTTTCAT+GGG | + | chr1_4:57477060-57477079 | None:intergenic | 25.0% |
| !!! | TAAACACCAGATTTTTTTCA+TGG | + | chr1_4:57477061-57477080 | None:intergenic | 25.0% |
| ! | AATATGTAACAGAGCAAAAT+TGG | + | chr1_4:57477369-57477388 | None:intergenic | 25.0% |
| !!! | TTTTTAGGTTGAGTAGTTAA+AGG | - | chr1_4:57477842-57477861 | Msa0172420:intron | 25.0% |
| !!! | TTTTAGGTTGAGTAGTTAAA+GGG | - | chr1_4:57477843-57477862 | Msa0172420:intron | 25.0% |
| ! | TTGAATTATAGGACTGATAT+TGG | - | chr1_4:57477909-57477928 | Msa0172420:intron | 25.0% |
| ! | TGCTATCAACATATGATATA+AGG | + | chr1_4:57477973-57477992 | None:intergenic | 25.0% |
| !!! | ATATCATATGTTGATAGCAA+AGG | - | chr1_4:57477974-57477993 | Msa0172420:intron | 25.0% |
| !! | TAGCAAAGGTTATATGATTT+TGG | - | chr1_4:57477988-57478007 | Msa0172420:intron | 25.0% |
| !! | AATGGGACAAATTTTCATTT+AGG | - | chr1_4:57478040-57478059 | Msa0172420:intron | 25.0% |
| !!! | GTTTAGCATACTTTATTTTC+AGG | + | chr1_4:57478498-57478517 | None:intergenic | 25.0% |
| ! | GTTTCAAAAATTCCAAATCA+TGG | + | chr1_4:57478610-57478629 | None:intergenic | 25.0% |
| ! | GTTCAAATGCACAATTTATT+TGG | - | chr1_4:57478646-57478665 | Msa0172420:intron | 25.0% |
| !!! | ATAAGGGTTTTGAAGTTTTT+AGG | - | chr1_4:57478755-57478774 | Msa0172420:intron | 25.0% |
| !!! | TTTGAAGTTTTTAGGATTGA+TGG | - | chr1_4:57478763-57478782 | Msa0172420:intron | 25.0% |
| ! | TTTCTTTGTGCATATTTAGA+AGG | - | chr1_4:57478941-57478960 | Msa0172420:intron | 25.0% |
| ! | TTCTTTGTGCATATTTAGAA+GGG | - | chr1_4:57478942-57478961 | Msa0172420:intron | 25.0% |
| ! | TGGTTAAATATGAATTGCTT+AGG | - | chr1_4:57479021-57479040 | Msa0172420:intron | 25.0% |
| ! | TTAAATATGAATTGCTTAGG+AGG | - | chr1_4:57479024-57479043 | Msa0172420:intron | 25.0% |
| ! | TCTAGACTATGATACTATTA+TGG | - | chr1_4:57479107-57479126 | Msa0172420:intron | 25.0% |
| !!! | ATAAAACCATGAGTTTTAAG+AGG | + | chr1_4:57479206-57479225 | None:intergenic | 25.0% |
| ! | AAAGGAATGAGTATGTTATT+GGG | + | chr1_4:57479363-57479382 | None:intergenic | 25.0% |
| ! | AAAAGGAATGAGTATGTTAT+TGG | + | chr1_4:57479364-57479383 | None:intergenic | 25.0% |
| !!! | CATTGAAAGAGTATTTGAAA+AGG | + | chr1_4:57479381-57479400 | None:intergenic | 25.0% |
| !! | TTTGATGTCTTCTAATTTGT+AGG | - | chr1_4:57479496-57479515 | Msa0172420:intron | 25.0% |
| !! | TTGATGTCTTCTAATTTGTA+GGG | - | chr1_4:57479497-57479516 | Msa0172420:intron | 25.0% |
| !! | ATTTAGGTGAGTTGAAAAAT+TGG | - | chr1_4:57479642-57479661 | Msa0172420:intron | 25.0% |
| !! | TTGAATTGATTTATCTAAGG+TGG | - | chr1_4:57480000-57480019 | Msa0172420:intron | 25.0% |
| ! | AAAGCATGACTTATACTTAT+TGG | - | chr1_4:57480288-57480307 | Msa0172420:intron | 25.0% |
| !! | ATTAATTTGATCATCTGAGA+TGG | - | chr1_4:57480360-57480379 | Msa0172420:intron | 25.0% |
| !! | TTAATTTGATCATCTGAGAT+GGG | - | chr1_4:57480361-57480380 | Msa0172420:intron | 25.0% |
| !! | TTTTAATCATACTTATTGGC+GGG | - | chr1_4:57480412-57480431 | Msa0172420:intron | 25.0% |
| !!! | TGAATTGTTAGTTTTTGTGT+TGG | - | chr1_4:57480450-57480469 | Msa0172420:intron | 25.0% |
| !!! | TGATTCAATTTTAGAAGAAG+AGG | - | chr1_4:57480487-57480506 | Msa0172420:intron | 25.0% |
| ! | AGGTAAAAATGGACATTATA+CGG | - | chr1_4:57480574-57480593 | Msa0172420:intron | 25.0% |
| !!! | AAGGGTATTAGAAGTTATTT+TGG | - | chr1_4:57480657-57480676 | Msa0172420:intron | 25.0% |
| !!! | AGGGTATTAGAAGTTATTTT+GGG | - | chr1_4:57480658-57480677 | Msa0172420:intron | 25.0% |
| ! | AATACTACTGATAAATTGGT+CGG | + | chr1_4:57481025-57481044 | None:intergenic | 25.0% |
| ! | CTCTAATACTACTGATAAAT+TGG | + | chr1_4:57481029-57481048 | None:intergenic | 25.0% |
| !!! | GCTTTTTTGAATTTTTACTC+TGG | - | chr1_4:57481212-57481231 | Msa0172420:intron | 25.0% |
| !! | GAATATCTGTTTTACGAATT+CGG | - | chr1_4:57481494-57481513 | Msa0172420:intron | 25.0% |
| AATGAAATGAATGAAGACCA+AGG | - | chr1_4:57475042-57475061 | Msa0172420:three_prime_UTR | 30.0% | |
| AAAAGATGAGGAAATTACCT+TGG | + | chr1_4:57475062-57475081 | None:intergenic | 30.0% | |
| TTCTGATTCTAAATCCAAAG+CGG | + | chr1_4:57475198-57475217 | None:intergenic | 30.0% | |
| TCATGACAATCACTTCAAAT+CGG | - | chr1_4:57475248-57475267 | Msa0172420:three_prime_UTR | 30.0% | |
| ! | GACAGTCATCAATTTTGAAT+GGG | - | chr1_4:57475387-57475406 | Msa0172420:three_prime_UTR | 30.0% |
| TCTAAAAATGGCTTCTACAT+TGG | - | chr1_4:57475662-57475681 | Msa0172420:three_prime_UTR | 30.0% | |
| ATTGGAAATATGATGTGAAG+TGG | - | chr1_4:57475680-57475699 | Msa0172420:three_prime_UTR | 30.0% | |
| !!! | TCTAGGTTTGTTTTATGTGA+AGG | - | chr1_4:57475848-57475867 | Msa0172420:three_prime_UTR | 30.0% |
| ! | TATGATGTTTTGCTTGATGA+TGG | - | chr1_4:57475875-57475894 | Msa0172420:three_prime_UTR | 30.0% |
| AACACGGTCAGTAAAATTTA+AGG | + | chr1_4:57475904-57475923 | None:intergenic | 30.0% | |
| ! | TTTTACTGACCGTGTTTTAT+AGG | - | chr1_4:57475908-57475927 | Msa0172420:three_prime_UTR | 30.0% |
| TATACTGCTCCTATAAAACA+CGG | + | chr1_4:57475920-57475939 | None:intergenic | 30.0% | |
| TCTTAAACCATAACGTTTGA+AGG | + | chr1_4:57475957-57475976 | None:intergenic | 30.0% | |
| TCAAACGTTATGGTTTAAGA+AGG | - | chr1_4:57475957-57475976 | Msa0172420:intron | 30.0% | |
| TGGTTTAAGAAGGATTTCAT+TGG | - | chr1_4:57475967-57475986 | Msa0172420:intron | 30.0% | |
| ! | TTTTGCAAAGAATCATCACA+CGG | + | chr1_4:57476119-57476138 | None:intergenic | 30.0% |
| CAAAACAGAGAGATATTTCA+TGG | - | chr1_4:57476134-57476153 | Msa0172420:intron | 30.0% | |
| AGTAGAGTTGCTTGAAATTA+TGG | - | chr1_4:57476367-57476386 | Msa0172420:intron | 30.0% | |
| !!! | GTTGAGACATTGCTTTTTTA+TGG | - | chr1_4:57476410-57476429 | Msa0172420:intron | 30.0% |
| !!! | AGACATTGCTTTTTTATGGA+TGG | - | chr1_4:57476414-57476433 | Msa0172420:intron | 30.0% |
| ! | ATTTTGCACCTAAACATTAC+AGG | - | chr1_4:57476554-57476573 | Msa0172420:intron | 30.0% |
| AGGATCGAAACTAAATGTTT+GGG | + | chr1_4:57476705-57476724 | None:intergenic | 30.0% | |
| AAGGATCGAAACTAAATGTT+TGG | + | chr1_4:57476706-57476725 | None:intergenic | 30.0% | |
| ! | TTTTCTTTTCTTTTCACACC+AGG | - | chr1_4:57476772-57476791 | Msa0172420:intron | 30.0% |
| ! | TTTCTTTTCTTTTCACACCA+GGG | - | chr1_4:57476773-57476792 | Msa0172420:intron | 30.0% |
| ! | GTTGTTAAGCTACTTGATTT+TGG | - | chr1_4:57476964-57476983 | Msa0172420:intron | 30.0% |
| !! | TTAAGCTACTTGATTTTGGT+GGG | - | chr1_4:57476968-57476987 | Msa0172420:intron | 30.0% |
| TAAAATGCATTGCAAGTGTT+TGG | - | chr1_4:57477027-57477046 | Msa0172420:intron | 30.0% | |
| AAATGCCCATGAAAAAAATC+TGG | - | chr1_4:57477052-57477071 | Msa0172420:intron | 30.0% | |
| !!! | AGCATCACATGTTTTTAGTA+AGG | - | chr1_4:57477080-57477099 | Msa0172420:intron | 30.0% |
| TCTCAAAATTCCTGTAGAAA+AGG | - | chr1_4:57477293-57477312 | Msa0172420:intron | 30.0% | |
| !! | TGCATTGGATAATTTGCTTT+AGG | - | chr1_4:57477326-57477345 | Msa0172420:intron | 30.0% |
| TTGGGTTAACATATTCTTTG+TGG | - | chr1_4:57477446-57477465 | Msa0172420:CDS | 30.0% | |
| ! | ATGATGGTCTTTTATGTAAG+TGG | - | chr1_4:57477577-57477596 | Msa0172420:intron | 30.0% |
| ACTTCCTGCAAATAATAGAA+AGG | + | chr1_4:57477661-57477680 | None:intergenic | 30.0% | |
| AATGCTCAAGGATCAAATAT+GGG | + | chr1_4:57477772-57477791 | None:intergenic | 30.0% | |
| TAATGCTCAAGGATCAAATA+TGG | + | chr1_4:57477773-57477792 | None:intergenic | 30.0% | |
| AAAGAGAAAACTAATGCTCA+AGG | + | chr1_4:57477784-57477803 | None:intergenic | 30.0% | |
| ! | CAAAGGTTATATGATTTTGG+AGG | - | chr1_4:57477991-57478010 | Msa0172420:intron | 30.0% |
| ! | TACTCTCATAAGCTTTTCAA+GGG | - | chr1_4:57478014-57478033 | Msa0172420:intron | 30.0% |
| !! | TAAGCTTTTCAAGGGATTAA+TGG | - | chr1_4:57478022-57478041 | Msa0172420:intron | 30.0% |
| !! | AAGCTTTTCAAGGGATTAAT+GGG | - | chr1_4:57478023-57478042 | Msa0172420:intron | 30.0% |
| AATATTGCGATAGGGATTAA+TGG | - | chr1_4:57478091-57478110 | Msa0172420:intron | 30.0% | |
| ATATTGCGATAGGGATTAAT+GGG | - | chr1_4:57478092-57478111 | Msa0172420:intron | 30.0% | |
| ! | GAGGAATTTAGATTTTGTTG+CGG | - | chr1_4:57478136-57478155 | Msa0172420:CDS | 30.0% |
| AACAAAGCTACAAAATTGGA+CGG | + | chr1_4:57478249-57478268 | None:intergenic | 30.0% | |
| ! | GTTCTACTTTAATTTCAAGC+AGG | + | chr1_4:57478274-57478293 | None:intergenic | 30.0% |
| AAGTAGAACAATTTGAAGGA+AGG | - | chr1_4:57478285-57478304 | Msa0172420:intron | 30.0% | |
| CACAATGAAACAATCATCAA+TGG | + | chr1_4:57478355-57478374 | None:intergenic | 30.0% | |
| !! | AAATTGGGTTGACATTCATT+TGG | - | chr1_4:57478379-57478398 | Msa0172420:intron | 30.0% |
| ATTTGGTTGTGATTCCAAAT+TGG | - | chr1_4:57478396-57478415 | Msa0172420:intron | 30.0% | |
| TTTGGTTGTGATTCCAAATT+GGG | - | chr1_4:57478397-57478416 | Msa0172420:intron | 30.0% | |
| AACTTAATGTTGTTGCACAT+GGG | + | chr1_4:57478426-57478445 | None:intergenic | 30.0% | |
| AAACTTAATGTTGTTGCACA+TGG | + | chr1_4:57478427-57478446 | None:intergenic | 30.0% | |
| CCTTTGAACATGTTTATCAA+AGG | + | chr1_4:57478544-57478563 | None:intergenic | 30.0% | |
| CCTTTGATAAACATGTTCAA+AGG | - | chr1_4:57478541-57478560 | Msa0172420:CDS | 30.0% | |
| TTGAACAAAATATGACTGAG+TGG | + | chr1_4:57478632-57478651 | None:intergenic | 30.0% | |
| AGTATCATAGTCTAGATATC+TGG | + | chr1_4:57479103-57479122 | None:intergenic | 30.0% | |
| TGATACTATTATGGTGAGTT+TGG | - | chr1_4:57479116-57479135 | Msa0172420:intron | 30.0% | |
| GCTATTCTTAACATTTGATG+AGG | - | chr1_4:57479149-57479168 | Msa0172420:intron | 30.0% | |
| AAGTTTCCTCTTAAAACTCA+TGG | - | chr1_4:57479197-57479216 | Msa0172420:intron | 30.0% | |
| !!! | CTCATGGTTTTATGAGAATA+TGG | - | chr1_4:57479213-57479232 | Msa0172420:intron | 30.0% |
| ! | GTTTTATGAGAATATGGTTG+TGG | - | chr1_4:57479219-57479238 | Msa0172420:intron | 30.0% |
| TGGGATATCACTATTTGAAA+AGG | + | chr1_4:57479344-57479363 | None:intergenic | 30.0% | |
| ! | TGATGTCTTCTAATTTGTAG+GGG | - | chr1_4:57479498-57479517 | Msa0172420:intron | 30.0% |
| GCATATAAACATGTAAGTGT+TGG | - | chr1_4:57479536-57479555 | Msa0172420:intron | 30.0% | |
| AAATTACTCAAATAGAGTGG+TGG | + | chr1_4:57479691-57479710 | None:intergenic | 30.0% | |
| ! | TACTACCTACAATTCTAAAG+CGG | + | chr1_4:57479736-57479755 | None:intergenic | 30.0% |
| GTAGTAGTGATGCAAATAAA+TGG | - | chr1_4:57479750-57479769 | Msa0172420:intron | 30.0% | |
| TGATAATCCTGATACATCAT+TGG | - | chr1_4:57480249-57480268 | Msa0172420:intron | 30.0% | |
| ! | TAATTTGATCATCTGAGATG+GGG | - | chr1_4:57480362-57480381 | Msa0172420:intron | 30.0% |
| !! | GGGTATTAGAAGTTATTTTG+GGG | - | chr1_4:57480659-57480678 | Msa0172420:intron | 30.0% |
| ! | TTTTCATACTTGTCACACAT+TGG | + | chr1_4:57480793-57480812 | None:intergenic | 30.0% |
| AGGTGAAAACAAAAGAGAGA+CGG | - | chr1_4:57474983-57475002 | Msa0172420:three_prime_UTR | 35.0% | |
| ! | GCTTTGGATTTAGAATCAGA+AGG | - | chr1_4:57475197-57475216 | Msa0172420:three_prime_UTR | 35.0% |
| ! | CGACAGTCATCAATTTTGAA+TGG | - | chr1_4:57475386-57475405 | Msa0172420:three_prime_UTR | 35.0% |
| ! | AGTCATCAATTTTGAATGGG+AGG | - | chr1_4:57475390-57475409 | Msa0172420:three_prime_UTR | 35.0% |
| AGATCGATTGAAGCAATGAA+AGG | - | chr1_4:57475521-57475540 | Msa0172420:three_prime_UTR | 35.0% | |
| ! | ATTCATCATGCTTTGTTGAG+TGG | - | chr1_4:57475594-57475613 | Msa0172420:three_prime_UTR | 35.0% |
| ! | TTTTCGACCTTCAAACGTTA+TGG | - | chr1_4:57475947-57475966 | Msa0172420:intron | 35.0% |
| ATCGAAACTAAATGTTTGGG+AGG | + | chr1_4:57476702-57476721 | None:intergenic | 35.0% | |
| ATCCTTTGCGTAGTTAGAAT+GGG | - | chr1_4:57476720-57476739 | Msa0172420:intron | 35.0% | |
| AATGCAAGAATGTATTTCCC+TGG | + | chr1_4:57476793-57476812 | None:intergenic | 35.0% | |
| ATACATTCTTGCATTCTTGC+TGG | - | chr1_4:57476798-57476817 | Msa0172420:intron | 35.0% | |
| ! | GTTAAGCTACTTGATTTTGG+TGG | - | chr1_4:57476967-57476986 | Msa0172420:intron | 35.0% |
| TTTAAATGACAAGCCACATC+AGG | - | chr1_4:57477176-57477195 | Msa0172420:intron | 35.0% | |
| GAGAAAGAACAACATGTATG+AGG | + | chr1_4:57477277-57477296 | None:intergenic | 35.0% | |
| GCAAATTATCCAATGCATCA+TGG | + | chr1_4:57477323-57477342 | None:intergenic | 35.0% | |
| !! | GGATAATTTGCTTTAGGTGT+TGG | - | chr1_4:57477332-57477351 | Msa0172420:intron | 35.0% |
| AGAACTGCACACATATAACA+AGG | - | chr1_4:57477396-57477415 | Msa0172420:CDS | 35.0% | |
| GAACTGCACACATATAACAA+GGG | - | chr1_4:57477397-57477416 | Msa0172420:CDS | 35.0% | |
| ! | CATATAACAAGGGCCTATTT+TGG | - | chr1_4:57477407-57477426 | Msa0172420:CDS | 35.0% |
| TTGTGGCAAAAGTTTCATTG+TGG | - | chr1_4:57477463-57477482 | Msa0172420:CDS | 35.0% | |
| TCTTGAAGCAAGATTTATGC+AGG | + | chr1_4:57477519-57477538 | None:intergenic | 35.0% | |
| GTCATGAAATTTGATGCATG+TGG | - | chr1_4:57477599-57477618 | Msa0172420:intron | 35.0% | |
| CTTGCCTTTCTATTATTTGC+AGG | - | chr1_4:57477654-57477673 | Msa0172420:intron | 35.0% | |
| ! | GTACTCTCATAAGCTTTTCA+AGG | - | chr1_4:57478013-57478032 | Msa0172420:intron | 35.0% |
| TTATGGACGTCAATGATTGT+TGG | - | chr1_4:57478183-57478202 | Msa0172420:intron | 35.0% | |
| GGACAACAAAGCTACAAAAT+TGG | + | chr1_4:57478253-57478272 | None:intergenic | 35.0% | |
| !! | AATGTTTGTTAGCCTTTGCT+TGG | - | chr1_4:57478323-57478342 | Msa0172420:intron | 35.0% |
| GAATCAAACTTGAAGTCTGA+AGG | + | chr1_4:57478476-57478495 | None:intergenic | 35.0% | |
| ! | CAATTGGTCTGTAACTTTGT+TGG | - | chr1_4:57478517-57478536 | Msa0172420:CDS | 35.0% |
| ! | ATGTTCAAAGGCATGTTACA+TGG | - | chr1_4:57478553-57478572 | Msa0172420:CDS | 35.0% |
| !! | CTTGATGATGAACCATGATT+TGG | - | chr1_4:57478595-57478614 | Msa0172420:intron | 35.0% |
| GACTATAGTGCCCAATATAA+TGG | - | chr1_4:57478716-57478735 | Msa0172420:intron | 35.0% | |
| ATATAGTTGGAACAACAGAG+CGG | + | chr1_4:57479002-57479021 | None:intergenic | 35.0% | |
| ATAGCAGCTGTAGTCAAATA+TGG | + | chr1_4:57479066-57479085 | None:intergenic | 35.0% | |
| GATGAGGTTAAACTTGACAT+TGG | - | chr1_4:57479165-57479184 | Msa0172420:intron | 35.0% | |
| GCTGAACAATGCAAAACAAT+AGG | + | chr1_4:57479586-57479605 | None:intergenic | 35.0% | |
| CTCTGGGCATGTATATATTT+AGG | - | chr1_4:57479626-57479645 | Msa0172420:intron | 35.0% | |
| TTCTCGGTGAAACAAACAAT+TGG | - | chr1_4:57479805-57479824 | Msa0172420:intron | 35.0% | |
| ACAAACAATTGGCAGTTCAT+TGG | - | chr1_4:57479816-57479835 | Msa0172420:intron | 35.0% | |
| TCATTGGAAGTCCTTAATTG+AGG | - | chr1_4:57480265-57480284 | Msa0172420:intron | 35.0% | |
| AGTCATGCTTTCCTCAATTA+AGG | + | chr1_4:57480279-57480298 | None:intergenic | 35.0% | |
| !!! | GGGTTTTGGATTTCATTCTA+AGG | - | chr1_4:57480382-57480401 | Msa0172420:intron | 35.0% |
| !! | ATAGTGGGTAGAGGTAAAAA+TGG | - | chr1_4:57480563-57480582 | Msa0172420:intron | 35.0% |
| TTACTCTCACAATTTCTGCA+AGG | + | chr1_4:57480631-57480650 | None:intergenic | 35.0% | |
| AACAAAAGCTTCACTTTCTG+CGG | + | chr1_4:57480695-57480714 | None:intergenic | 35.0% | |
| TATGAATGTCATCTGTACTC+TGG | - | chr1_4:57480814-57480833 | Msa0172420:intron | 35.0% | |
| ! | GGTTTTCAAATCCTGCATAT+CGG | + | chr1_4:57480843-57480862 | None:intergenic | 35.0% |
| TATGCAGGATTTGAAAACCT+TGG | - | chr1_4:57480844-57480863 | Msa0172420:intron | 35.0% | |
| ! | AAAACCTTGGCCATGTATTT+TGG | - | chr1_4:57480857-57480876 | Msa0172420:intron | 35.0% |
| TCAGTAGTATTAGAGTTCGA+CGG | - | chr1_4:57481034-57481053 | Msa0172420:intron | 35.0% | |
| GCTAAAATACAATGTCGACA+TGG | - | chr1_4:57481080-57481099 | Msa0172420:intron | 35.0% | |
| TAGCGTGTAAGAAATACTCA+AGG | - | chr1_4:57481138-57481157 | Msa0172420:intron | 35.0% | |
| ! | CTCTAAAAAACAGCATGTCT+TGG | + | chr1_4:57481178-57481197 | None:intergenic | 35.0% |
| !!! | TTTTAGAGTTCCAGAAGCAA+TGG | - | chr1_4:57481190-57481209 | Msa0172420:intron | 35.0% |
| TTCAAAAAAGCCATTGCTTC+TGG | + | chr1_4:57481203-57481222 | None:intergenic | 35.0% | |
| ACTAATAAGCATGAAGCAAG+AGG | - | chr1_4:57481239-57481258 | Msa0172420:intron | 35.0% | |
| CTAATAAGCATGAAGCAAGA+GGG | - | chr1_4:57481240-57481259 | Msa0172420:intron | 35.0% | |
| GTGACTCGATTATGTGTTTA+AGG | - | chr1_4:57481364-57481383 | Msa0172420:intron | 35.0% | |
| !! | TGTTGAGATATGCACTGATT+TGG | - | chr1_4:57481388-57481407 | Msa0172420:intron | 35.0% |
| !! | CTGATTTGGTCTTCACTATT+AGG | - | chr1_4:57481402-57481421 | Msa0172420:intron | 35.0% |
| GGCGGAAACGATTAAAATTC+TGG | + | chr1_4:57475177-57475196 | None:intergenic | 40.0% | |
| TGATTCTAAATCCAAAGCGG+CGG | + | chr1_4:57475195-57475214 | None:intergenic | 40.0% | |
| AGACAGTGGATCACATTGTT+GGG | + | chr1_4:57475623-57475642 | None:intergenic | 40.0% | |
| !! | CCATTTTTAGACCAGTTGGA+AGG | + | chr1_4:57475653-57475672 | None:intergenic | 40.0% |
| ! | CCTTCCAACTGGTCTAAAAA+TGG | - | chr1_4:57475650-57475669 | Msa0172420:three_prime_UTR | 40.0% |
| !!! | GAAGCCATTTTTAGACCAGT+TGG | + | chr1_4:57475657-57475676 | None:intergenic | 40.0% |
| AATAGCAGCAAATACAGTGC+AGG | + | chr1_4:57475743-57475762 | None:intergenic | 40.0% | |
| GCTAGCAGACAATTGAAATG+AGG | - | chr1_4:57475787-57475806 | Msa0172420:three_prime_UTR | 40.0% | |
| AGAATCATCACACGGAAGTT+AGG | + | chr1_4:57476111-57476130 | None:intergenic | 40.0% | |
| GCTATAGATTCAGCCAAAGT+GGG | + | chr1_4:57476187-57476206 | None:intergenic | 40.0% | |
| AGCTATAGATTCAGCCAAAG+TGG | + | chr1_4:57476188-57476207 | None:intergenic | 40.0% | |
| ! | TGGCTGAATCTATAGCTTTG+AGG | - | chr1_4:57476191-57476210 | Msa0172420:intron | 40.0% |
| !! | CTGAATCTATAGCTTTGAGG+TGG | - | chr1_4:57476194-57476213 | Msa0172420:intron | 40.0% |
| TGGTGACTTCAATTGCCTTT+AGG | - | chr1_4:57476214-57476233 | Msa0172420:intron | 40.0% | |
| !! | ATTGCCTTTAGGTACTGACT+TGG | - | chr1_4:57476225-57476244 | Msa0172420:intron | 40.0% |
| AGAATCATACCTGTCTCAAG+TGG | + | chr1_4:57476449-57476468 | None:intergenic | 40.0% | |
| GATCCTTTGCGTAGTTAGAA+TGG | - | chr1_4:57476719-57476738 | Msa0172420:intron | 40.0% | |
| AACCCATTCTAACTACGCAA+AGG | + | chr1_4:57476725-57476744 | None:intergenic | 40.0% | |
| !! | GTTAGAATGGGTTGTTGAAC+TGG | - | chr1_4:57476732-57476751 | Msa0172420:intron | 40.0% |
| !! | ACCAAGAATTGATGGGTTTG+AGG | + | chr1_4:57476857-57476876 | None:intergenic | 40.0% |
| !! | TTTTGGTGGGTGGGTATTTT+AGG | - | chr1_4:57476981-57477000 | Msa0172420:intron | 40.0% |
| AGGAGGGCTAGAATTAGTAA+TGG | - | chr1_4:57477001-57477020 | Msa0172420:intron | 40.0% | |
| GGAGGGCTAGAATTAGTAAT+GGG | - | chr1_4:57477002-57477021 | Msa0172420:intron | 40.0% | |
| TCTACTTCTTTACACCTGAC+TGG | - | chr1_4:57477142-57477161 | Msa0172420:intron | 40.0% | |
| TTCTTTACACCTGACTGGAT+AGG | - | chr1_4:57477147-57477166 | Msa0172420:intron | 40.0% | |
| AAACCAAATCCTATCCAGTC+AGG | + | chr1_4:57477159-57477178 | None:intergenic | 40.0% | |
| ATCAAAACCGTATCCTGATG+TGG | + | chr1_4:57477192-57477211 | None:intergenic | 40.0% | |
| AACATGTATGAGGTTCATGC+AGG | + | chr1_4:57477267-57477286 | None:intergenic | 40.0% | |
| ! | TCATGGAACTCCTTTTCTAC+AGG | + | chr1_4:57477306-57477325 | None:intergenic | 40.0% |
| AAAGGAGTTCCATGATGCAT+TGG | - | chr1_4:57477311-57477330 | Msa0172420:intron | 40.0% | |
| !! | ATAACAAGGGCCTATTTTGG+AGG | - | chr1_4:57477410-57477429 | Msa0172420:CDS | 40.0% |
| GATGAAGAAGACTGAGATGA+TGG | - | chr1_4:57477561-57477580 | Msa0172420:intron | 40.0% | |
| AGGACTGATATTGGAACTGA+TGG | - | chr1_4:57477918-57477937 | Msa0172420:intron | 40.0% | |
| GGACTGATATTGGAACTGAT+GGG | - | chr1_4:57477919-57477938 | Msa0172420:intron | 40.0% | |
| GACTGATATTGGAACTGATG+GGG | - | chr1_4:57477920-57477939 | Msa0172420:intron | 40.0% | |
| CAATGGAAGTAACCAAGCAA+AGG | + | chr1_4:57478338-57478357 | None:intergenic | 40.0% | |
| ! | GATTGATGGTTCAGTGAGAT+TGG | - | chr1_4:57478777-57478796 | Msa0172420:intron | 40.0% |
| GCTCTGTTGTTCCAACTATA+TGG | - | chr1_4:57479001-57479020 | Msa0172420:intron | 40.0% | |
| AATTGCTTAGGAGGTGATTC+AGG | - | chr1_4:57479033-57479052 | Msa0172420:intron | 40.0% | |
| ATTGCTTAGGAGGTGATTCA+GGG | - | chr1_4:57479034-57479053 | Msa0172420:intron | 40.0% | |
| GTAGGGGATTATGATCGAAA+CGG | - | chr1_4:57479514-57479533 | Msa0172420:intron | 40.0% | |
| !! | TACCTACAATTCTAAAGCGG+AGG | + | chr1_4:57479733-57479752 | None:intergenic | 40.0% |
| !! | GTGTCTTTTGCTTTTGAGCA+GGG | - | chr1_4:57479772-57479791 | Msa0172420:intron | 40.0% |
| !! | TGTCTTTTGCTTTTGAGCAG+GGG | - | chr1_4:57479773-57479792 | Msa0172420:intron | 40.0% |
| ATTAGATAGGCGCAAAACAC+AGG | + | chr1_4:57480082-57480101 | None:intergenic | 40.0% | |
| AGGACTTCCAATGATGTATC+AGG | + | chr1_4:57480259-57480278 | None:intergenic | 40.0% | |
| ! | TCTGTTGTTTGGAGTTTCAG+AGG | - | chr1_4:57480529-57480548 | Msa0172420:intron | 40.0% |
| AGAGGAAGATGAGCTTATAG+TGG | - | chr1_4:57480547-57480566 | Msa0172420:intron | 40.0% | |
| GAGGAAGATGAGCTTATAGT+GGG | - | chr1_4:57480548-57480567 | Msa0172420:intron | 40.0% | |
| ! | ATTGTGAGAGTAAGAGTGCA+AGG | - | chr1_4:57480638-57480657 | Msa0172420:intron | 40.0% |
| ! | TTGTGAGAGTAAGAGTGCAA+GGG | - | chr1_4:57480639-57480658 | Msa0172420:intron | 40.0% |
| ! | GAAGCTTTTGTTGAGAAGAG+TGG | - | chr1_4:57480703-57480722 | Msa0172420:intron | 40.0% |
| AGAGAGGATGTCTTTGATGA+GGG | - | chr1_4:57480726-57480745 | Msa0172420:intron | 40.0% | |
| CTTTGATGAGGGGTAATTTG+CGG | - | chr1_4:57480737-57480756 | Msa0172420:intron | 40.0% | |
| GCAGAAAAATGTTACATGCC+CGG | - | chr1_4:57480759-57480778 | Msa0172420:intron | 40.0% | |
| TCACACATTGGACATGTAAC+CGG | + | chr1_4:57480781-57480800 | None:intergenic | 40.0% | |
| !!! | GCCATGTATTTTGGTGCATA+TGG | - | chr1_4:57480866-57480885 | Msa0172420:intron | 40.0% |
| GCCATATGCACCAAAATACA+TGG | + | chr1_4:57480870-57480889 | None:intergenic | 40.0% | |
| ATGGCTTCGTTGAAACGAAA+AGG | - | chr1_4:57480885-57480904 | Msa0172420:intron | 40.0% | |
| TTCGTTGAAACGAAAAGGTC+TGG | - | chr1_4:57480890-57480909 | Msa0172420:intron | 40.0% | |
| TCGTTGAAACGAAAAGGTCT+GGG | - | chr1_4:57480891-57480910 | Msa0172420:intron | 40.0% | |
| ! | CGTGTGAAGTACTATCTGAT+TGG | - | chr1_4:57480953-57480972 | Msa0172420:intron | 40.0% |
| TACTCAAGGAGAGTTCATCA+AGG | - | chr1_4:57481152-57481171 | Msa0172420:intron | 40.0% | |
| AACAAAAGAGAGACGGCAAG+AGG | - | chr1_4:57474990-57475009 | Msa0172420:three_prime_UTR | 45.0% | |
| !! | AGGAGAGGAAAGTGTTGTGT+TGG | - | chr1_4:57475010-57475029 | Msa0172420:three_prime_UTR | 45.0% |
| TTTAATCGTTTCCGCCGCTT+TGG | - | chr1_4:57475181-57475200 | Msa0172420:three_prime_UTR | 45.0% | |
| CAGACAGTGGATCACATTGT+TGG | + | chr1_4:57475624-57475643 | None:intergenic | 45.0% | |
| TGGAAGGATATCACAGACAG+TGG | + | chr1_4:57475637-57475656 | None:intergenic | 45.0% | |
| GTCTGTGATATCCTTCCAAC+TGG | - | chr1_4:57475639-57475658 | Msa0172420:three_prime_UTR | 45.0% | |
| !! | TGTCTGCTAGCACTGATGAA+GGG | + | chr1_4:57475778-57475797 | None:intergenic | 45.0% |
| !! | TTGTCTGCTAGCACTGATGA+AGG | + | chr1_4:57475779-57475798 | None:intergenic | 45.0% |
| TCAGCCAAAGTGGGAAAGTT+AGG | + | chr1_4:57476178-57476197 | None:intergenic | 45.0% | |
| GAGTCCAAGTCAGTACCTAA+AGG | + | chr1_4:57476232-57476251 | None:intergenic | 45.0% | |
| ! | ATGATCTTGCCACTTGAGAC+AGG | - | chr1_4:57476437-57476456 | Msa0172420:intron | 45.0% |
| GCCTCAAACCCATCAATTCT+TGG | - | chr1_4:57476853-57476872 | Msa0172420:three_prime_UTR | 45.0% | |
| !! | AGCTACTTGATTTTGGTGGG+TGG | - | chr1_4:57476971-57476990 | Msa0172420:intron | 45.0% |
| !! | GCTACTTGATTTTGGTGGGT+GGG | - | chr1_4:57476972-57476991 | Msa0172420:intron | 45.0% |
| ACACCTGACTGGATAGGATT+TGG | - | chr1_4:57477153-57477172 | Msa0172420:intron | 45.0% | |
| TGACAAGCCACATCAGGATA+CGG | - | chr1_4:57477182-57477201 | Msa0172420:intron | 45.0% | |
| GCACCTTCATCCTCCAAAAT+AGG | + | chr1_4:57477423-57477442 | None:intergenic | 45.0% | |
| ATTGGAACTGATGGGGAATG+TGG | - | chr1_4:57477927-57477946 | Msa0172420:intron | 45.0% | |
| AACTGATGGGGAATGTGGTA+TGG | - | chr1_4:57477932-57477951 | Msa0172420:intron | 45.0% | |
| TGGGGAATGTGGTATGGTAT+TGG | - | chr1_4:57477938-57477957 | Msa0172420:intron | 45.0% | |
| ! | TCCACGCATTCACGCTTTTA+TGG | - | chr1_4:57478166-57478185 | Msa0172420:CDS | 45.0% |
| ! | TCCATAAAAGCGTGAATGCG+TGG | + | chr1_4:57478170-57478189 | None:intergenic | 45.0% |
| TGCACATGGGAATCCCAATT+TGG | + | chr1_4:57478413-57478432 | None:intergenic | 45.0% | |
| !! | AGCCTCCGCTTTAGAATTGT+AGG | - | chr1_4:57479728-57479747 | Msa0172420:intron | 45.0% |
| !! | GGTGTCTTTTGCTTTTGAGC+AGG | - | chr1_4:57479771-57479790 | Msa0172420:intron | 45.0% |
| GCAGGGGCAAAACAATTTCT+CGG | - | chr1_4:57479789-57479808 | Msa0172420:intron | 45.0% | |
| TCGATCTGCAGTGCGAATAA+AGG | - | chr1_4:57479856-57479875 | Msa0172420:intron | 45.0% | |
| !! | GATCATCTGAGATGGGGTTT+TGG | - | chr1_4:57480368-57480387 | Msa0172420:intron | 45.0% |
| !! | GATGAGCTTATAGTGGGTAG+AGG | - | chr1_4:57480554-57480573 | Msa0172420:intron | 45.0% |
| TTGTTGAGAAGAGTGGAGAG+AGG | - | chr1_4:57480710-57480729 | Msa0172420:intron | 45.0% | |
| GAGAGAGGATGTCTTTGATG+AGG | - | chr1_4:57480725-57480744 | Msa0172420:intron | 45.0% | |
| GAGAGGATGTCTTTGATGAG+GGG | - | chr1_4:57480727-57480746 | Msa0172420:intron | 45.0% | |
| CACACATTGGACATGTAACC+GGG | + | chr1_4:57480780-57480799 | None:intergenic | 45.0% | |
| TGCACCAAAATACATGGCCA+AGG | + | chr1_4:57480864-57480883 | None:intergenic | 45.0% | |
| GTAGTATTAGAGTTCGACGG+TGG | - | chr1_4:57481037-57481056 | Msa0172420:intron | 45.0% | |
| !!! | TTTTTTTTTTTTTGAATTAT+AGG | - | chr1_4:57477898-57477917 | Msa0172420:intron | 5.0% |
| GCAGCCTAACTTTCCCACTT+TGG | - | chr1_4:57476171-57476190 | Msa0172420:intron | 50.0% | |
| !! | TGGTGGGTGGGTATTTTAGG+AGG | - | chr1_4:57476984-57477003 | Msa0172420:intron | 50.0% |
| !! | GGTGGGTGGGTATTTTAGGA+GGG | - | chr1_4:57476985-57477004 | Msa0172420:intron | 50.0% |
| !! | GGGCCTATTTTGGAGGATGA+AGG | - | chr1_4:57477417-57477436 | Msa0172420:CDS | 50.0% |
| ! | TGGAGGATGAAGGTGCATGT+TGG | - | chr1_4:57477427-57477446 | Msa0172420:CDS | 50.0% |
| ! | GGAGGATGAAGGTGCATGTT+GGG | - | chr1_4:57477428-57477447 | Msa0172420:CDS | 50.0% |
| TCACTTTCTGCGGCATCACA+AGG | + | chr1_4:57480685-57480704 | None:intergenic | 50.0% | |
| ATTGTTTGCAGCTGCTGCAC+TGG | + | chr1_4:57480998-57481017 | None:intergenic | 50.0% | |
| !! | CGGTGGACTAAGCTAGCAAA+TGG | - | chr1_4:57481054-57481073 | Msa0172420:intron | 50.0% |
| TCATCCCTCCGTCTCACAAA+CGG | + | chr1_4:57481106-57481125 | None:intergenic | 50.0% | |
| TGTGAGACGGAGGGATGATT+TGG | - | chr1_4:57481108-57481127 | Msa0172420:intron | 50.0% | |
| AGCATGAAGCAAGAGGGTGA+TGG | - | chr1_4:57481246-57481265 | Msa0172420:intron | 50.0% | |
| GCATGAAGCAAGAGGGTGAT+GGG | - | chr1_4:57481247-57481266 | Msa0172420:intron | 50.0% | |
| AAGAGAGACGGCAAGAGGAG+AGG | - | chr1_4:57474995-57475014 | Msa0172420:three_prime_UTR | 55.0% | |
| TACTCTGGCTGCCGATATGC+AGG | - | chr1_4:57480829-57480848 | Msa0172420:intron | 55.0% | |
| CGACATGGCCGTTTGTGAGA+CGG | - | chr1_4:57481095-57481114 | Msa0172420:intron | 55.0% | |
| ATGGCCGTTTGTGAGACGGA+GGG | - | chr1_4:57481099-57481118 | Msa0172420:intron | 55.0% | |
| CATGGCCGTTTGTGAGACGG+AGG | - | chr1_4:57481098-57481117 | Msa0172420:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 57474968 | 57481524 | 57474968 | ID=Msa0172420;Name=Msa0172420 |
| chr1_4 | mRNA | 57474968 | 57481524 | 57474968 | ID=Msa0172420-mRNA-1;Parent=Msa0172420;Name=Msa0172420-mRNA-1;_AED=0.42;_eAED=0.44;_QI=0|0.5|0.57|1|0.16|0.28|7|1128|135 |
| chr1_4 | exon | 57474968 | 57475943 | 57474968 | ID=Msa0172420-mRNA-1:exon:17615;Parent=Msa0172420-mRNA-1 |
| chr1_4 | exon | 57476615 | 57476699 | 57476615 | ID=Msa0172420-mRNA-1:exon:17614;Parent=Msa0172420-mRNA-1 |
| chr1_4 | exon | 57476845 | 57476974 | 57476845 | ID=Msa0172420-mRNA-1:exon:17613;Parent=Msa0172420-mRNA-1 |
| chr1_4 | exon | 57477364 | 57477532 | 57477364 | ID=Msa0172420-mRNA-1:exon:17612;Parent=Msa0172420-mRNA-1 |
| chr1_4 | exon | 57478107 | 57478189 | 57478107 | ID=Msa0172420-mRNA-1:exon:17611;Parent=Msa0172420-mRNA-1 |
| chr1_4 | exon | 57478497 | 57478572 | 57478497 | ID=Msa0172420-mRNA-1:exon:17610;Parent=Msa0172420-mRNA-1 |
| chr1_4 | exon | 57481508 | 57481524 | 57481508 | ID=Msa0172420-mRNA-1:exon:17609;Parent=Msa0172420-mRNA-1 |
| chr1_4 | CDS | 57481508 | 57481524 | 57481508 | ID=Msa0172420-mRNA-1:cds;Parent=Msa0172420-mRNA-1 |
| chr1_4 | CDS | 57478497 | 57478572 | 57478497 | ID=Msa0172420-mRNA-1:cds;Parent=Msa0172420-mRNA-1 |
| chr1_4 | CDS | 57478107 | 57478189 | 57478107 | ID=Msa0172420-mRNA-1:cds;Parent=Msa0172420-mRNA-1 |
| chr1_4 | CDS | 57477364 | 57477532 | 57477364 | ID=Msa0172420-mRNA-1:cds;Parent=Msa0172420-mRNA-1 |
| chr1_4 | CDS | 57476912 | 57476974 | 57476912 | ID=Msa0172420-mRNA-1:cds;Parent=Msa0172420-mRNA-1 |
| chr1_4 | three_prime_UTR | 57476845 | 57476911 | 57476845 | ID=Msa0172420-mRNA-1:three_prime_utr;Parent=Msa0172420-mRNA-1 |
| chr1_4 | three_prime_UTR | 57476615 | 57476699 | 57476615 | ID=Msa0172420-mRNA-1:three_prime_utr;Parent=Msa0172420-mRNA-1 |
| chr1_4 | three_prime_UTR | 57474968 | 57475943 | 57474968 | ID=Msa0172420-mRNA-1:three_prime_utr;Parent=Msa0172420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
