AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0179530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 152 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTGTGGAGGGTTTATT+TGG 0.096944 1_4:-67073557 None:intergenic
GAAAATCTGTGGAGTGAATT+TGG 0.201836 1_4:-67073952 None:intergenic
TCTTCTGCCAAAATGTTTCT+AGG 0.215694 1_4:-67074123 None:intergenic
AGTGCATGCACACACAAATT+TGG 0.249165 1_4:+67073620 Msa0179530:five_prime_UTR
CCCTCGAACGAATTCATTAA+AGG 0.251897 1_4:+67075483 Msa0179530:three_prime_UTR
AAATGTTTCTAGGTTGCTTT+TGG 0.259502 1_4:-67074113 None:intergenic
AAACTATGTTTATCCAATTC+TGG 0.263532 1_4:-67073793 None:intergenic
AAAGCAACCTAGAAACATTT+TGG 0.264376 1_4:+67074116 Msa0179530:five_prime_UTR
GAGAATCCACCACAGGATTT+TGG 0.273271 1_4:+67074716 Msa0179530:five_prime_UTR
GAGAATCCGACACAGGATTT+TGG 0.283283 1_4:+67075796 Msa0179530:three_prime_UTR
GAGAGTCCGACACAGGATTT+TGG 0.297950 1_4:+67075364 Msa0179530:CDS
GGGAATCCGACACGGGATTT+TGG 0.298063 1_4:+67075580 Msa0179530:three_prime_UTR
ATTGGATAAACATAGTTTCT+TGG 0.319523 1_4:+67073798 Msa0179530:five_prime_UTR
TGGTTCAAGTTGTGTCCATA+TGG 0.328738 1_4:-67074093 None:intergenic
TGCTGGTGAGAGTTCCTTGC+AGG 0.367836 1_4:-67074542 Msa0179540:CDS
TCTTTGTGGAGGGTTTATTT+GGG 0.372332 1_4:-67073556 None:intergenic
TTCTGCTCAAGCTCTTCAAT+TGG 0.381056 1_4:-67073750 None:intergenic
GAGAATCCGTAACAGGATTT+CGG 0.383109 1_4:+67074932 Msa0179530:five_prime_UTR
CTTGGCGAGGTTCTTGAAGC+TGG 0.389849 1_4:-67075291 Msa0179540:CDS
GTTTAAGTATGAATTTCTTA+AGG 0.406736 1_4:-67074177 None:intergenic
TGCATTGGCGACCCCGGAAA+AGG 0.414810 1_4:+67073716 Msa0179530:five_prime_UTR
ACAATGTGGAGGACCAGAAT+TGG 0.415430 1_4:+67073780 Msa0179530:five_prime_UTR
GTCACTTGAGAATCCGTAAC+AGG 0.417271 1_4:+67074925 Msa0179530:five_prime_UTR
GATGAAAATGTAGATGTATC+TGG 0.418284 1_4:-67075441 Msa0179540:CDS
AAAAGGTTATATAAATTTCA+AGG 0.421257 1_4:-67074228 None:intergenic
TGGCAGAAGAAACATTCATA+TGG 0.421675 1_4:+67074136 Msa0179530:five_prime_UTR
CATGTCGAGGTTCTTGAATC+TGG 0.422150 1_4:-67075075 Msa0179540:CDS
CTCTTTGGCATTGTTCGCCT+CGG 0.426362 1_4:+67075035 Msa0179530:five_prime_UTR
GGTTCAAGTTGTGTCCATAT+GGG 0.432104 1_4:-67074092 None:intergenic
CATGTTGAGGTTGTTGAAGT+TGG 0.452754 1_4:-67075507 Msa0179540:CDS
AAACTCAACCATTCAATGCT+TGG 0.456332 1_4:+67074386 Msa0179530:five_prime_UTR
AATGAAAATGTAGATGTCTC+TGG 0.457620 1_4:-67075225 Msa0179540:CDS
AATGAAAATGTAGATGTCTC+TGG 0.457620 1_4:-67075657 Msa0179540:CDS
TGAGTTACTGTTCATATCAA+TGG 0.463556 1_4:+67074750 Msa0179530:five_prime_UTR
TCTTTGGCATTGTTCCCCTC+AGG 0.464398 1_4:+67074607 Msa0179530:five_prime_UTR
CATGGTTGAACCTGCTTCTG+AGG 0.465736 1_4:-67075868 Msa0179540:CDS
GAAACTGGCGTAAATCCTTC+CGG 0.471329 1_4:-67074427 Msa0179540:CDS
TCCTTTAGTGAATTCATCTC+AGG 0.474890 1_4:-67075268 Msa0179540:CDS
CATGTTGAGGTTCTCGAAGC+TGG 0.478921 1_4:-67075723 Msa0179540:CDS
TGGGGTTTCCCCTCAGAAGC+AGG 0.479051 1_4:+67075858 Msa0179530:three_prime_UTR
TTGTGTCCATATGGGTCCAT+CGG 0.480320 1_4:-67074084 None:intergenic
AGTTCTGTTCTTAATCATGC+TGG 0.480932 1_4:-67074559 Msa0179540:CDS
TTGAATGTTGGTGGATGCAT+TGG 0.496826 1_4:+67073701 Msa0179530:five_prime_UTR
GATGAAAATGTAGATGTCTC+TGG 0.496914 1_4:-67075009 Msa0179540:CDS
CTTCACCCGATGGACCCATA+TGG 0.499118 1_4:+67074078 Msa0179530:five_prime_UTR
TTGAAGAGCTTGAGCAGAAA+CGG 0.499313 1_4:+67073754 Msa0179530:five_prime_UTR
CAAGACACGCCTTTGAATGT+TGG 0.501205 1_4:+67073689 Msa0179530:five_prime_UTR
AATGGTGAACTTGCATATGA+AGG 0.507108 1_4:-67074505 Msa0179540:CDS
CATGTCAAGGTTCTTGAAGC+TGG 0.507256 1_4:-67074646 Msa0179540:CDS
GCATTGGCGACCCCGGAAAA+GGG 0.511813 1_4:+67073717 Msa0179530:five_prime_UTR
TACACTCAAAGGATCTGCTT+GGG 0.516937 1_4:+67074019 Msa0179530:five_prime_UTR
TTTGATATGAATGATTCCCT+TGG 0.518099 1_4:-67075309 Msa0179540:CDS
TCCTTTAATGAATTCGTTCG+AGG 0.519628 1_4:-67075484 Msa0179540:CDS
ATAAACCCTCCACAAAGAAA+AGG 0.521231 1_4:+67073561 Msa0179530:five_prime_UTR
CAGGTAAGATCTGATTTGAA+TGG 0.522109 1_4:-67074523 Msa0179540:CDS
TCCTTTAGTGAATTTGCCTG+AGG 0.528803 1_4:-67074623 Msa0179540:CDS
CCCTCAGGCAAATTCACTAA+AGG 0.531261 1_4:+67074622 Msa0179530:five_prime_UTR
TGTGTCCATATGGGTCCATC+GGG 0.531617 1_4:-67074083 None:intergenic
GTACACTCAAAGGATCTGCT+TGG 0.537764 1_4:+67074018 Msa0179530:five_prime_UTR
ATTGCAAACAGGGCTTGAAA+AGG 0.538451 1_4:+67073926 Msa0179530:five_prime_UTR
ACTCATTACATATAATCAGC+AGG 0.540135 1_4:-67073884 None:intergenic
AATTCATATCAGTGAAAGCA+TGG 0.542955 1_4:+67075838 Msa0179530:three_prime_UTR
GCCACTCGGGAATCCGACAC+GGG 0.543003 1_4:+67075573 Msa0179530:three_prime_UTR
ACAGGATTTCGGTCATGCCC+TGG 0.546439 1_4:+67074943 Msa0179530:five_prime_UTR
GTCAGTTTCAGCACTATCAC+CGG 0.546792 1_4:+67074408 Msa0179530:five_prime_UTR
CGTGATGAGGTTGTAGAAGC+CGG 0.550440 1_4:-67074859 Msa0179540:CDS
TCCTTCAGTGAGTTCATCTG+AGG 0.551624 1_4:-67074836 Msa0179540:CDS
GCCTCGGACGAATTCGCTAA+AGG 0.555362 1_4:+67075051 Msa0179530:five_prime_UTR
GCATGACCGAAATCCTGTTA+CGG 0.556637 1_4:-67074938 Msa0179540:CDS
CATATCATTATCCGCCACTC+GGG 0.557306 1_4:+67075560 Msa0179530:three_prime_UTR
GCCTGAGATGAATTCACTAA+AGG 0.558076 1_4:+67075267 Msa0179530:CDS
CATACTTAAACAACAACGCA+AGG 0.558249 1_4:+67074189 Msa0179530:five_prime_UTR
GACACGCCTTTGAATGTTGG+TGG 0.558642 1_4:+67073692 Msa0179530:five_prime_UTR
AAAGGTTATATAAATTTCAA+GGG 0.559238 1_4:-67074227 None:intergenic
AGATGAACTCACTGAAGGAC+CGG 0.561010 1_4:+67074840 Msa0179530:five_prime_UTR
ATGGTTGAACCTGCTTCTGA+GGG 0.561744 1_4:-67075867 Msa0179540:CDS
CGCCACTCGGGAATCCGACA+CGG 0.562372 1_4:+67075572 Msa0179530:three_prime_UTR
CAACTTCAACAACCTCAACA+TGG 0.562639 1_4:+67075508 Msa0179530:three_prime_UTR
GACTGAGATGAATTCACTAA+AGG 0.562927 1_4:+67075699 Msa0179530:three_prime_UTR
AAAATAGTCAATTGCAAACA+GGG 0.568058 1_4:+67073916 Msa0179530:five_prime_UTR
ATGCATCCACCAACATTCAA+AGG 0.568455 1_4:-67073698 None:intergenic
CCTTTAATGAATTCGTTCGA+GGG 0.570810 1_4:-67075483 Msa0179540:CDS
ATTCATATCAGTGAAAGCAT+GGG 0.571063 1_4:+67075839 Msa0179530:three_prime_UTR
ACATATCATTATCCGCCACT+CGG 0.571781 1_4:+67075559 Msa0179530:three_prime_UTR
ATTTCAAGGGAAATAGTAGC+GGG 0.577302 1_4:-67074214 None:intergenic
GGTGGATGCATTGGCGACCC+CGG 0.577482 1_4:+67073710 Msa0179530:five_prime_UTR
GAAACTGACCAAGCATTGAA+TGG 0.578676 1_4:-67074394 Msa0179540:CDS
GTCTTTACATCTTACAAGCA+CGG 0.579973 1_4:+67073583 Msa0179530:five_prime_UTR
GGGTATGAAACTATGAAGGA+TGG 0.580997 1_4:+67074039 Msa0179530:five_prime_UTR
GATATGAATAATAATTCACC+AGG 0.583218 1_4:-67074961 Msa0179540:CDS
CATATATATAGTACACTCAA+AGG 0.583306 1_4:+67074008 Msa0179530:five_prime_UTR
CCTTTAGTGAATTTGCCTGA+GGG 0.589636 1_4:-67074622 Msa0179540:CDS
GCTTGGGTATGAAACTATGA+AGG 0.590652 1_4:+67074035 Msa0179530:five_prime_UTR
CTTTAGTGAATTTGCCTGAG+GGG 0.593156 1_4:-67074621 Msa0179540:CDS
GCCACTTGAGAATCCACCAC+AGG 0.593799 1_4:+67074709 Msa0179530:five_prime_UTR
TCCTGTGTCGGACTCTCAAG+TGG 0.595214 1_4:-67075358 Msa0179540:CDS
TCCTGTGGTGGATTCTCAAG+TGG 0.596893 1_4:-67074710 Msa0179540:CDS
CAGCTTCAAGAACCTTGACA+TGG 0.598956 1_4:+67074647 Msa0179530:five_prime_UTR
CCTAACTACTGTAAAGAACA+TGG 0.601594 1_4:-67075886 Msa0179540:CDS
CAAATCAGATCTTACCTGCA+AGG 0.602421 1_4:+67074528 Msa0179530:five_prime_UTR
ATTACAGCAGCTTCACCCGA+TGG 0.604273 1_4:+67074068 Msa0179530:five_prime_UTR
AACTTCAACAACCTCAACAT+GGG 0.605269 1_4:+67075509 Msa0179530:three_prime_UTR
ATGGTGAACTTGCATATGAA+GGG 0.605397 1_4:-67074504 Msa0179540:CDS
AGCTTCAAGAACCTCGCCAA+GGG 0.606699 1_4:+67075293 Msa0179530:CDS
CCCTCAGATGAACTCACTGA+AGG 0.609881 1_4:+67074835 Msa0179530:five_prime_UTR
GCTTGACCAAAATCCTGTGT+CGG 0.610675 1_4:-67075370 Msa0179540:CDS
CAGCTTCGAGAACCTCAACA+TGG 0.611900 1_4:+67075724 Msa0179530:three_prime_UTR
TCCTTTAGCGAATTCGTCCG+AGG 0.615635 1_4:-67075052 Msa0179540:CDS
CAGATTCAAGAACCTCGACA+TGG 0.616350 1_4:+67075076 Msa0179530:exon
CCTTCAGTGAGTTCATCTGA+GGG 0.617921 1_4:-67074835 Msa0179540:CDS
TGTGTCGGATTCTCAAGTAG+TGG 0.620961 1_4:-67075787 Msa0179540:CDS
ACCACTTGAGAGTCCGACAC+AGG 0.627307 1_4:+67075357 Msa0179530:CDS
TCTTGACCAAAATCCTGTGT+CGG 0.630072 1_4:-67075802 Msa0179540:CDS
TGTTTGTATCTGAAAATCTG+TGG 0.632172 1_4:-67073963 None:intergenic
TTCATATCAGTGAAAGCATG+GGG 0.634242 1_4:+67075840 Msa0179530:three_prime_UTR
TGTGTCGGACTCTCAAGTGG+TGG 0.635392 1_4:-67075355 Msa0179540:CDS
TATGAATGATTCCCTTGGCG+AGG 0.638237 1_4:-67075304 Msa0179540:CDS
CTTTAATGAATTCGTTCGAG+GGG 0.640154 1_4:-67075482 Msa0179540:CDS
TATGAATGATACCCATGTCA+AGG 0.640377 1_4:-67074659 Msa0179540:CDS
CAGCTTCAAGAACCTCGCCA+AGG 0.642345 1_4:+67075292 Msa0179530:CDS
AGCTTCGAGAACCTCAACAT+GGG 0.642446 1_4:+67075725 Msa0179530:three_prime_UTR
TCTTGACCAAAATCCTGTGG+TGG 0.645518 1_4:-67074722 Msa0179540:CDS
GTTTCAGCACTATCACCGGA+AGG 0.648466 1_4:+67074412 Msa0179530:five_prime_UTR
TGTGGTGGATTCTCAAGTGG+CGG 0.648766 1_4:-67074707 Msa0179540:CDS
GATATGAATTGTGATTCACC+AGG 0.650574 1_4:-67075393 Msa0179540:CDS
CGGCTTCTACAACCTCATCA+CGG 0.654350 1_4:+67074860 Msa0179530:five_prime_UTR
TATGAATGATGCCCATGTTG+AGG 0.654727 1_4:-67075520 Msa0179540:CDS
TATGAATGATGCCCATGTTG+AGG 0.654727 1_4:-67075736 Msa0179540:CDS
TGTTACGGATTCTCAAGTGA+CGG 0.655586 1_4:-67074923 Msa0179540:CDS
GATATGAATTGTGATTCACC+AGG 0.656707 1_4:-67075609 Msa0179540:CDS
AATTTCAAGGGAAATAGTAG+CGG 0.657961 1_4:-67074215 None:intergenic
GGTATGAAACTATGAAGGAT+GGG 0.660194 1_4:+67074040 Msa0179530:five_prime_UTR
CGTGTCGGATTCCCGAGTGG+CGG 0.663733 1_4:-67075571 Msa0179540:CDS
ATACTTAAACAACAACGCAA+GGG 0.665093 1_4:+67074190 Msa0179530:five_prime_UTR
ACTACTTGAGAATCCGACAC+AGG 0.665932 1_4:+67075789 Msa0179530:three_prime_UTR
GCTAGACCAAAATCCCGTGT+CGG 0.669834 1_4:-67075586 Msa0179540:CDS
TATGAATGATACCCATGTCG+AGG 0.673396 1_4:-67075088 Msa0179540:CDS
AGATTCAAGAACCTCGACAT+GGG 0.676487 1_4:+67075077 Msa0179530:exon
AGCTTCAAGAACCTTGACAT+GGG 0.678179 1_4:+67074648 Msa0179530:five_prime_UTR
GATATGAACAGTAACTCACC+AGG 0.679687 1_4:-67074745 Msa0179540:CDS
ATATGAATTGTGATTCACCA+GGG 0.680702 1_4:-67075392 Msa0179540:CDS
TCCCGTGTCGGATTCCCGAG+TGG 0.686587 1_4:-67075574 Msa0179540:CDS
AGGTCTTGACCAAAATCCTG+TGG 0.688111 1_4:-67074725 Msa0179540:CDS
TTATATGTAATGAGTTACTG+TGG 0.693505 1_4:+67073892 Msa0179530:five_prime_UTR
AGCAGAAACGGATAACAATG+TGG 0.694256 1_4:+67073766 Msa0179530:five_prime_UTR
GATATGAATTGTGATTCACC+AGG 0.696700 1_4:-67075825 Msa0179540:CDS
TGGTTGAACCTGCTTCTGAG+GGG 0.706511 1_4:-67075866 Msa0179540:CDS
TATGAATGATGTCCGTGATG+AGG 0.709093 1_4:-67074872 Msa0179540:CDS
ATATGAATTGTGATTCACCA+GGG 0.718721 1_4:-67075608 Msa0179540:CDS
AGAAACGGATAACAATGTGG+AGG 0.724626 1_4:+67073769 Msa0179530:five_prime_UTR
CTTCAGTGAGTTCATCTGAG+GGG 0.729179 1_4:-67074834 Msa0179540:CDS
ATATGAATAATAATTCACCA+GGG 0.793367 1_4:-67074960 Msa0179540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTGTTTTATTTGATATTTT+TGG - chr1_4:67073858-67073877 None:intergenic 15.0%
!! AAAGGTTATATAAATTTCAA+GGG - chr1_4:67074230-67074249 None:intergenic 15.0%
!! AAAAGGTTATATAAATTTCA+AGG - chr1_4:67074231-67074250 None:intergenic 15.0%
!!! TACATTTTTATTATTCTCTT+TGG + chr1_4:67074804-67074823 Msa0179530:five_prime_UTR 15.0%
!!! TTCATATCAAACTTTTTAAA+AGG + chr1_4:67074889-67074908 Msa0179530:five_prime_UTR 15.0%
!!! CTTGTTTTATTTGATATTTT+TGG - chr1_4:67073858-67073877 None:intergenic 15.0%
!! AAAGGTTATATAAATTTCAA+GGG - chr1_4:67074230-67074249 None:intergenic 15.0%
!! AAAAGGTTATATAAATTTCA+AGG - chr1_4:67074231-67074250 None:intergenic 15.0%
!!! TACATTTTTATTATTCTCTT+TGG + chr1_4:67074804-67074823 Msa0179530:five_prime_UTR 15.0%
!!! TTCATATCAAACTTTTTAAA+AGG + chr1_4:67074889-67074908 Msa0179530:five_prime_UTR 15.0%
!!! TAGTTTTTTTGAGTCATATA+TGG - chr1_4:67073826-67073845 None:intergenic 20.0%
!! ATATATGACTCAAAAAAACT+AGG + chr1_4:67073825-67073844 Msa0179530:five_prime_UTR 20.0%
!! GTTTAAGTATGAATTTCTTA+AGG - chr1_4:67074180-67074199 None:intergenic 20.0%
!! ATATGAATAATAATTCACCA+GGG - chr1_4:67074963-67074982 Msa0179540:CDS 20.0%
!!! TACATTTTCATTATTCTCTT+TGG + chr1_4:67075236-67075255 Msa0179530:CDS 20.0%
!!! TACATTTTCATTATTCTCTT+CGG + chr1_4:67075236-67075255 Msa0179530:CDS 20.0%
!!! TAGTTTTTTTGAGTCATATA+TGG - chr1_4:67073826-67073845 None:intergenic 20.0%
!! ATATATGACTCAAAAAAACT+AGG + chr1_4:67073825-67073844 Msa0179530:five_prime_UTR 20.0%
!! GTTTAAGTATGAATTTCTTA+AGG - chr1_4:67074180-67074199 None:intergenic 20.0%
!! ATATGAATAATAATTCACCA+GGG - chr1_4:67074963-67074982 Msa0179540:CDS 20.0%
!!! TACATTTTCATTATTCTCTT+TGG + chr1_4:67075236-67075255 Msa0179530:CDS 20.0%
!!! TACATTTTCATTATTCTCTT+CGG + chr1_4:67075236-67075255 Msa0179530:CDS 20.0%
!!! CTTCAACTTTTTTGTAATGA+AGG - chr1_4:67073514-67073533 None:intergenic 25.0%
! AAACTATGTTTATCCAATTC+TGG - chr1_4:67073796-67073815 None:intergenic 25.0%
! ATTGGATAAACATAGTTTCT+TGG + chr1_4:67073798-67073817 Msa0179530:five_prime_UTR 25.0%
! TTATATGTAATGAGTTACTG+TGG + chr1_4:67073892-67073911 Msa0179530:five_prime_UTR 25.0%
! AAAAATAGTCAATTGCAAAC+AGG + chr1_4:67073915-67073934 Msa0179530:five_prime_UTR 25.0%
! AAAATAGTCAATTGCAAACA+GGG + chr1_4:67073916-67073935 Msa0179530:five_prime_UTR 25.0%
! CATATATATAGTACACTCAA+AGG + chr1_4:67074008-67074027 Msa0179530:five_prime_UTR 25.0%
! AATCTAGATAGTCTGAAAAA+AGG - chr1_4:67074248-67074267 None:intergenic 25.0%
!!! TTATATGCAACCATTTTTCA+AGG - chr1_4:67074296-67074315 None:intergenic 25.0%
! TTGAAAAATGGTTGCATATA+AGG + chr1_4:67074295-67074314 Msa0179530:five_prime_UTR 25.0%
!! TACATTTTCAACATTCTCTT+TGG + chr1_4:67074591-67074610 Msa0179530:five_prime_UTR 25.0%
! AATAAAAATGTAGATGTCTC+TGG - chr1_4:67074796-67074815 Msa0179540:CDS 25.0%
! GATATGAATAATAATTCACC+AGG - chr1_4:67074964-67074983 Msa0179540:CDS 25.0%
!! TACATTTTCATCATTCTCTT+TGG + chr1_4:67075020-67075039 Msa0179530:five_prime_UTR 25.0%
!! TACATTTTCATCATTCTCTT+TGG + chr1_4:67075020-67075039 Msa0179530:five_prime_UTR 25.0%
!!! CTTCAACTTTTTTGTAATGA+AGG - chr1_4:67073514-67073533 None:intergenic 25.0%
! AAACTATGTTTATCCAATTC+TGG - chr1_4:67073796-67073815 None:intergenic 25.0%
! ATTGGATAAACATAGTTTCT+TGG + chr1_4:67073798-67073817 Msa0179530:five_prime_UTR 25.0%
! TTATATGTAATGAGTTACTG+TGG + chr1_4:67073892-67073911 Msa0179530:five_prime_UTR 25.0%
! AAAAATAGTCAATTGCAAAC+AGG + chr1_4:67073915-67073934 Msa0179530:five_prime_UTR 25.0%
! AAAATAGTCAATTGCAAACA+GGG + chr1_4:67073916-67073935 Msa0179530:five_prime_UTR 25.0%
! CATATATATAGTACACTCAA+AGG + chr1_4:67074008-67074027 Msa0179530:five_prime_UTR 25.0%
! AATCTAGATAGTCTGAAAAA+AGG - chr1_4:67074248-67074267 None:intergenic 25.0%
!!! TTATATGCAACCATTTTTCA+AGG - chr1_4:67074296-67074315 None:intergenic 25.0%
! TTGAAAAATGGTTGCATATA+AGG + chr1_4:67074295-67074314 Msa0179530:five_prime_UTR 25.0%
!! TACATTTTCAACATTCTCTT+TGG + chr1_4:67074591-67074610 Msa0179530:five_prime_UTR 25.0%
! AATAAAAATGTAGATGTCTC+TGG - chr1_4:67074796-67074815 Msa0179540:CDS 25.0%
! GATATGAATAATAATTCACC+AGG - chr1_4:67074964-67074983 Msa0179540:CDS 25.0%
!! TACATTTTCATCATTCTCTT+TGG + chr1_4:67075020-67075039 Msa0179530:five_prime_UTR 25.0%
!! TACATTTTCATCATTCTCTT+TGG + chr1_4:67075020-67075039 Msa0179530:five_prime_UTR 25.0%
! ATGTAAAGACCTTTTCTTTG+TGG - chr1_4:67073573-67073592 None:intergenic 30.0%
ACTCATTACATATAATCAGC+AGG - chr1_4:67073887-67073906 None:intergenic 30.0%
TGTTTGTATCTGAAAATCTG+TGG - chr1_4:67073966-67073985 None:intergenic 30.0%
!!! AAATGTTTCTAGGTTGCTTT+TGG - chr1_4:67074116-67074135 None:intergenic 30.0%
! AAAGCAACCTAGAAACATTT+TGG + chr1_4:67074116-67074135 Msa0179530:five_prime_UTR 30.0%
ATACTTAAACAACAACGCAA+GGG + chr1_4:67074190-67074209 Msa0179530:five_prime_UTR 30.0%
AATTTCAAGGGAAATAGTAG+CGG - chr1_4:67074218-67074237 None:intergenic 30.0%
!! GAAATGCATTTTGATGAAAC+TGG - chr1_4:67074445-67074464 Msa0179540:CDS 30.0%
AGGGAAAAAGAATTCACATT+TGG - chr1_4:67074488-67074507 Msa0179540:CDS 30.0%
TGAGTTACTGTTCATATCAA+TGG + chr1_4:67074750-67074769 Msa0179530:five_prime_UTR 30.0%
AATGAAAATGTAGATGTCTC+TGG - chr1_4:67075228-67075247 Msa0179540:CDS 30.0%
TTTGATATGAATGATTCCCT+TGG - chr1_4:67075312-67075331 Msa0179540:CDS 30.0%
ATATGAATTGTGATTCACCA+GGG - chr1_4:67075395-67075414 Msa0179540:CDS 30.0%
GATGAAAATGTAGATGTATC+TGG - chr1_4:67075444-67075463 Msa0179540:CDS 30.0%
ATATGAATTGTGATTCACCA+GGG - chr1_4:67075395-67075414 Msa0179540:CDS 30.0%
AATGAAAATGTAGATGTCTC+TGG - chr1_4:67075228-67075247 Msa0179540:CDS 30.0%
AATTCATATCAGTGAAAGCA+TGG + chr1_4:67075838-67075857 Msa0179530:three_prime_UTR 30.0%
! ATTCATATCAGTGAAAGCAT+GGG + chr1_4:67075839-67075858 Msa0179530:three_prime_UTR 30.0%
! ATGTAAAGACCTTTTCTTTG+TGG - chr1_4:67073573-67073592 None:intergenic 30.0%
ACTCATTACATATAATCAGC+AGG - chr1_4:67073887-67073906 None:intergenic 30.0%
TGTTTGTATCTGAAAATCTG+TGG - chr1_4:67073966-67073985 None:intergenic 30.0%
!!! AAATGTTTCTAGGTTGCTTT+TGG - chr1_4:67074116-67074135 None:intergenic 30.0%
! AAAGCAACCTAGAAACATTT+TGG + chr1_4:67074116-67074135 Msa0179530:five_prime_UTR 30.0%
ATACTTAAACAACAACGCAA+GGG + chr1_4:67074190-67074209 Msa0179530:five_prime_UTR 30.0%
AATTTCAAGGGAAATAGTAG+CGG - chr1_4:67074218-67074237 None:intergenic 30.0%
!! GAAATGCATTTTGATGAAAC+TGG - chr1_4:67074445-67074464 Msa0179540:CDS 30.0%
AGGGAAAAAGAATTCACATT+TGG - chr1_4:67074488-67074507 Msa0179540:CDS 30.0%
TGAGTTACTGTTCATATCAA+TGG + chr1_4:67074750-67074769 Msa0179530:five_prime_UTR 30.0%
AATGAAAATGTAGATGTCTC+TGG - chr1_4:67075228-67075247 Msa0179540:CDS 30.0%
TTTGATATGAATGATTCCCT+TGG - chr1_4:67075312-67075331 Msa0179540:CDS 30.0%
ATATGAATTGTGATTCACCA+GGG - chr1_4:67075395-67075414 Msa0179540:CDS 30.0%
GATGAAAATGTAGATGTATC+TGG - chr1_4:67075444-67075463 Msa0179540:CDS 30.0%
ATATGAATTGTGATTCACCA+GGG - chr1_4:67075395-67075414 Msa0179540:CDS 30.0%
AATGAAAATGTAGATGTCTC+TGG - chr1_4:67075228-67075247 Msa0179540:CDS 30.0%
AATTCATATCAGTGAAAGCA+TGG + chr1_4:67075838-67075857 Msa0179530:three_prime_UTR 30.0%
! ATTCATATCAGTGAAAGCAT+GGG + chr1_4:67075839-67075858 Msa0179530:three_prime_UTR 30.0%
TCTTTGTGGAGGGTTTATTT+GGG - chr1_4:67073559-67073578 None:intergenic 35.0%
TTCTTTGTGGAGGGTTTATT+TGG - chr1_4:67073560-67073579 None:intergenic 35.0%
ATAAACCCTCCACAAAGAAA+AGG + chr1_4:67073561-67073580 Msa0179530:five_prime_UTR 35.0%
! AAAGACCTTTTCTTTGTGGA+GGG - chr1_4:67073569-67073588 None:intergenic 35.0%
! TAAAGACCTTTTCTTTGTGG+AGG - chr1_4:67073570-67073589 None:intergenic 35.0%
GTCTTTACATCTTACAAGCA+CGG + chr1_4:67073583-67073602 Msa0179530:five_prime_UTR 35.0%
GAAAATCTGTGGAGTGAATT+TGG - chr1_4:67073955-67073974 None:intergenic 35.0%
GGTATGAAACTATGAAGGAT+GGG + chr1_4:67074040-67074059 Msa0179530:five_prime_UTR 35.0%
TCTTCTGCCAAAATGTTTCT+AGG - chr1_4:67074126-67074145 None:intergenic 35.0%
TGGCAGAAGAAACATTCATA+TGG + chr1_4:67074136-67074155 Msa0179530:five_prime_UTR 35.0%
CATACTTAAACAACAACGCA+AGG + chr1_4:67074189-67074208 Msa0179530:five_prime_UTR 35.0%
ATTTCAAGGGAAATAGTAGC+GGG - chr1_4:67074217-67074236 None:intergenic 35.0%
AGTTCCAAAGCCTTGAAAAA+TGG + chr1_4:67074283-67074302 Msa0179530:five_prime_UTR 35.0%
AAACTCAACCATTCAATGCT+TGG + chr1_4:67074386-67074405 Msa0179530:five_prime_UTR 35.0%
ATGGTGAACTTGCATATGAA+GGG - chr1_4:67074507-67074526 Msa0179540:CDS 35.0%
AATGGTGAACTTGCATATGA+AGG - chr1_4:67074508-67074527 Msa0179540:CDS 35.0%
! CAGGTAAGATCTGATTTGAA+TGG - chr1_4:67074526-67074545 Msa0179540:CDS 35.0%
AGTTCTGTTCTTAATCATGC+TGG - chr1_4:67074562-67074581 Msa0179540:CDS 35.0%
TATGAATGATACCCATGTCA+AGG - chr1_4:67074662-67074681 Msa0179540:CDS 35.0%
GATGAAAATGTAGATGTCTC+TGG - chr1_4:67075012-67075031 Msa0179540:CDS 35.0%
TCCTTTAGTGAATTCATCTC+AGG - chr1_4:67075271-67075290 Msa0179540:CDS 35.0%
GATATGAATTGTGATTCACC+AGG - chr1_4:67075396-67075415 Msa0179540:CDS 35.0%
CTTTAATGAATTCGTTCGAG+GGG - chr1_4:67075485-67075504 Msa0179540:CDS 35.0%
CCTTTAATGAATTCGTTCGA+GGG - chr1_4:67075486-67075505 Msa0179540:CDS 35.0%
TCCTTTAATGAATTCGTTCG+AGG - chr1_4:67075487-67075506 Msa0179540:CDS 35.0%
AACTTCAACAACCTCAACAT+GGG + chr1_4:67075509-67075528 Msa0179530:three_prime_UTR 35.0%
GATATGAATTGTGATTCACC+AGG - chr1_4:67075396-67075415 Msa0179540:CDS 35.0%
GACTGAGATGAATTCACTAA+AGG + chr1_4:67075699-67075718 Msa0179530:three_prime_UTR 35.0%
GATATGAATTGTGATTCACC+AGG - chr1_4:67075396-67075415 Msa0179540:CDS 35.0%
! TTCATATCAGTGAAAGCATG+GGG + chr1_4:67075840-67075859 Msa0179530:three_prime_UTR 35.0%
TCTTTGTGGAGGGTTTATTT+GGG - chr1_4:67073559-67073578 None:intergenic 35.0%
TTCTTTGTGGAGGGTTTATT+TGG - chr1_4:67073560-67073579 None:intergenic 35.0%
ATAAACCCTCCACAAAGAAA+AGG + chr1_4:67073561-67073580 Msa0179530:five_prime_UTR 35.0%
! AAAGACCTTTTCTTTGTGGA+GGG - chr1_4:67073569-67073588 None:intergenic 35.0%
! TAAAGACCTTTTCTTTGTGG+AGG - chr1_4:67073570-67073589 None:intergenic 35.0%
GTCTTTACATCTTACAAGCA+CGG + chr1_4:67073583-67073602 Msa0179530:five_prime_UTR 35.0%
GAAAATCTGTGGAGTGAATT+TGG - chr1_4:67073955-67073974 None:intergenic 35.0%
GGTATGAAACTATGAAGGAT+GGG + chr1_4:67074040-67074059 Msa0179530:five_prime_UTR 35.0%
TCTTCTGCCAAAATGTTTCT+AGG - chr1_4:67074126-67074145 None:intergenic 35.0%
TGGCAGAAGAAACATTCATA+TGG + chr1_4:67074136-67074155 Msa0179530:five_prime_UTR 35.0%
CATACTTAAACAACAACGCA+AGG + chr1_4:67074189-67074208 Msa0179530:five_prime_UTR 35.0%
ATTTCAAGGGAAATAGTAGC+GGG - chr1_4:67074217-67074236 None:intergenic 35.0%
AGTTCCAAAGCCTTGAAAAA+TGG + chr1_4:67074283-67074302 Msa0179530:five_prime_UTR 35.0%
AAACTCAACCATTCAATGCT+TGG + chr1_4:67074386-67074405 Msa0179530:five_prime_UTR 35.0%
ATGGTGAACTTGCATATGAA+GGG - chr1_4:67074507-67074526 Msa0179540:CDS 35.0%
AATGGTGAACTTGCATATGA+AGG - chr1_4:67074508-67074527 Msa0179540:CDS 35.0%
! CAGGTAAGATCTGATTTGAA+TGG - chr1_4:67074526-67074545 Msa0179540:CDS 35.0%
AGTTCTGTTCTTAATCATGC+TGG - chr1_4:67074562-67074581 Msa0179540:CDS 35.0%
TATGAATGATACCCATGTCA+AGG - chr1_4:67074662-67074681 Msa0179540:CDS 35.0%
GATGAAAATGTAGATGTCTC+TGG - chr1_4:67075012-67075031 Msa0179540:CDS 35.0%
TCCTTTAGTGAATTCATCTC+AGG - chr1_4:67075271-67075290 Msa0179540:CDS 35.0%
GATATGAATTGTGATTCACC+AGG - chr1_4:67075396-67075415 Msa0179540:CDS 35.0%
CTTTAATGAATTCGTTCGAG+GGG - chr1_4:67075485-67075504 Msa0179540:CDS 35.0%
CCTTTAATGAATTCGTTCGA+GGG - chr1_4:67075486-67075505 Msa0179540:CDS 35.0%
TCCTTTAATGAATTCGTTCG+AGG - chr1_4:67075487-67075506 Msa0179540:CDS 35.0%
AACTTCAACAACCTCAACAT+GGG + chr1_4:67075509-67075528 Msa0179530:three_prime_UTR 35.0%
GATATGAATTGTGATTCACC+AGG - chr1_4:67075396-67075415 Msa0179540:CDS 35.0%
GACTGAGATGAATTCACTAA+AGG + chr1_4:67075699-67075718 Msa0179530:three_prime_UTR 35.0%
GATATGAATTGTGATTCACC+AGG - chr1_4:67075396-67075415 Msa0179540:CDS 35.0%
! TTCATATCAGTGAAAGCATG+GGG + chr1_4:67075840-67075859 Msa0179530:three_prime_UTR 35.0%
AGTGCATGCACACACAAATT+TGG + chr1_4:67073620-67073639 Msa0179530:five_prime_UTR 40.0%
ATGCATCCACCAACATTCAA+AGG - chr1_4:67073701-67073720 None:intergenic 40.0%
! TTGAATGTTGGTGGATGCAT+TGG + chr1_4:67073701-67073720 Msa0179530:five_prime_UTR 40.0%
TTCTGCTCAAGCTCTTCAAT+TGG - chr1_4:67073753-67073772 None:intergenic 40.0%
TTGAAGAGCTTGAGCAGAAA+CGG + chr1_4:67073754-67073773 Msa0179530:five_prime_UTR 40.0%
AGCAGAAACGGATAACAATG+TGG + chr1_4:67073766-67073785 Msa0179530:five_prime_UTR 40.0%
AGAAACGGATAACAATGTGG+AGG + chr1_4:67073769-67073788 Msa0179530:five_prime_UTR 40.0%
ATTGCAAACAGGGCTTGAAA+AGG + chr1_4:67073926-67073945 Msa0179530:five_prime_UTR 40.0%
TACACTCAAAGGATCTGCTT+GGG + chr1_4:67074019-67074038 Msa0179530:five_prime_UTR 40.0%
GCTTGGGTATGAAACTATGA+AGG + chr1_4:67074035-67074054 Msa0179530:five_prime_UTR 40.0%
GGGTATGAAACTATGAAGGA+TGG + chr1_4:67074039-67074058 Msa0179530:five_prime_UTR 40.0%
!! GGTTCAAGTTGTGTCCATAT+GGG - chr1_4:67074095-67074114 None:intergenic 40.0%
!! TGGTTCAAGTTGTGTCCATA+TGG - chr1_4:67074096-67074115 None:intergenic 40.0%
!!! GCAACCATTTTTCAAGGCTT+TGG - chr1_4:67074290-67074309 None:intergenic 40.0%
!! GAAACTGACCAAGCATTGAA+TGG - chr1_4:67074397-67074416 Msa0179540:CDS 40.0%
CAAATCAGATCTTACCTGCA+AGG + chr1_4:67074528-67074547 Msa0179530:five_prime_UTR 40.0%
CTTTAGTGAATTTGCCTGAG+GGG - chr1_4:67074624-67074643 Msa0179540:CDS 40.0%
CCTTTAGTGAATTTGCCTGA+GGG - chr1_4:67074625-67074644 Msa0179540:CDS 40.0%
TCCTTTAGTGAATTTGCCTG+AGG - chr1_4:67074626-67074645 Msa0179540:CDS 40.0%
AGCTTCAAGAACCTTGACAT+GGG + chr1_4:67074648-67074667 Msa0179530:five_prime_UTR 40.0%
GATATGAACAGTAACTCACC+AGG - chr1_4:67074748-67074767 Msa0179540:CDS 40.0%
TATGAATGATGTCCGTGATG+AGG - chr1_4:67074875-67074894 Msa0179540:CDS 40.0%
TGTTACGGATTCTCAAGTGA+CGG - chr1_4:67074926-67074945 Msa0179540:CDS 40.0%
GAGAATCCGTAACAGGATTT+CGG + chr1_4:67074932-67074951 Msa0179530:five_prime_UTR 40.0%
AGATTCAAGAACCTCGACAT+GGG + chr1_4:67075077-67075096 Msa0179530:exon 40.0%
TATGAATGATACCCATGTCG+AGG - chr1_4:67075091-67075110 Msa0179540:CDS 40.0%
ACTTGACCAAAATCCTGTGT+CGG - chr1_4:67075157-67075176 Msa0179540:CDS 40.0%
GATATGAATTGTGATTCCCC+AGG - chr1_4:67075180-67075199 Msa0179540:CDS 40.0%
GCCTGAGATGAATTCACTAA+AGG + chr1_4:67075267-67075286 Msa0179530:CDS 40.0%
CCCTCGAACGAATTCATTAA+AGG + chr1_4:67075483-67075502 Msa0179530:three_prime_UTR 40.0%
CATGTTGAGGTTGTTGAAGT+TGG - chr1_4:67075510-67075529 Msa0179540:CDS 40.0%
CAACTTCAACAACCTCAACA+TGG + chr1_4:67075508-67075527 Msa0179530:three_prime_UTR 40.0%
TATGAATGATGCCCATGTTG+AGG - chr1_4:67075523-67075542 Msa0179540:CDS 40.0%
ACATATCATTATCCGCCACT+CGG + chr1_4:67075559-67075578 Msa0179530:three_prime_UTR 40.0%
TATGAATGATGCCCATGTTG+AGG - chr1_4:67075523-67075542 Msa0179540:CDS 40.0%
TCTTGACCAAAATCCTGTGT+CGG - chr1_4:67075805-67075824 Msa0179540:CDS 40.0%
AGTGCATGCACACACAAATT+TGG + chr1_4:67073620-67073639 Msa0179530:five_prime_UTR 40.0%
ATGCATCCACCAACATTCAA+AGG - chr1_4:67073701-67073720 None:intergenic 40.0%
! TTGAATGTTGGTGGATGCAT+TGG + chr1_4:67073701-67073720 Msa0179530:five_prime_UTR 40.0%
TTCTGCTCAAGCTCTTCAAT+TGG - chr1_4:67073753-67073772 None:intergenic 40.0%
TTGAAGAGCTTGAGCAGAAA+CGG + chr1_4:67073754-67073773 Msa0179530:five_prime_UTR 40.0%
AGCAGAAACGGATAACAATG+TGG + chr1_4:67073766-67073785 Msa0179530:five_prime_UTR 40.0%
AGAAACGGATAACAATGTGG+AGG + chr1_4:67073769-67073788 Msa0179530:five_prime_UTR 40.0%
ATTGCAAACAGGGCTTGAAA+AGG + chr1_4:67073926-67073945 Msa0179530:five_prime_UTR 40.0%
TACACTCAAAGGATCTGCTT+GGG + chr1_4:67074019-67074038 Msa0179530:five_prime_UTR 40.0%
GCTTGGGTATGAAACTATGA+AGG + chr1_4:67074035-67074054 Msa0179530:five_prime_UTR 40.0%
GGGTATGAAACTATGAAGGA+TGG + chr1_4:67074039-67074058 Msa0179530:five_prime_UTR 40.0%
!! GGTTCAAGTTGTGTCCATAT+GGG - chr1_4:67074095-67074114 None:intergenic 40.0%
!! TGGTTCAAGTTGTGTCCATA+TGG - chr1_4:67074096-67074115 None:intergenic 40.0%
!!! GCAACCATTTTTCAAGGCTT+TGG - chr1_4:67074290-67074309 None:intergenic 40.0%
!! GAAACTGACCAAGCATTGAA+TGG - chr1_4:67074397-67074416 Msa0179540:CDS 40.0%
CAAATCAGATCTTACCTGCA+AGG + chr1_4:67074528-67074547 Msa0179530:five_prime_UTR 40.0%
CTTTAGTGAATTTGCCTGAG+GGG - chr1_4:67074624-67074643 Msa0179540:CDS 40.0%
CCTTTAGTGAATTTGCCTGA+GGG - chr1_4:67074625-67074644 Msa0179540:CDS 40.0%
TCCTTTAGTGAATTTGCCTG+AGG - chr1_4:67074626-67074645 Msa0179540:CDS 40.0%
AGCTTCAAGAACCTTGACAT+GGG + chr1_4:67074648-67074667 Msa0179530:five_prime_UTR 40.0%
GATATGAACAGTAACTCACC+AGG - chr1_4:67074748-67074767 Msa0179540:CDS 40.0%
TATGAATGATGTCCGTGATG+AGG - chr1_4:67074875-67074894 Msa0179540:CDS 40.0%
TGTTACGGATTCTCAAGTGA+CGG - chr1_4:67074926-67074945 Msa0179540:CDS 40.0%
GAGAATCCGTAACAGGATTT+CGG + chr1_4:67074932-67074951 Msa0179530:five_prime_UTR 40.0%
AGATTCAAGAACCTCGACAT+GGG + chr1_4:67075077-67075096 Msa0179530:exon 40.0%
TATGAATGATACCCATGTCG+AGG - chr1_4:67075091-67075110 Msa0179540:CDS 40.0%
ACTTGACCAAAATCCTGTGT+CGG - chr1_4:67075157-67075176 Msa0179540:CDS 40.0%
GATATGAATTGTGATTCCCC+AGG - chr1_4:67075180-67075199 Msa0179540:CDS 40.0%
GCCTGAGATGAATTCACTAA+AGG + chr1_4:67075267-67075286 Msa0179530:CDS 40.0%
CCCTCGAACGAATTCATTAA+AGG + chr1_4:67075483-67075502 Msa0179530:three_prime_UTR 40.0%
CATGTTGAGGTTGTTGAAGT+TGG - chr1_4:67075510-67075529 Msa0179540:CDS 40.0%
CAACTTCAACAACCTCAACA+TGG + chr1_4:67075508-67075527 Msa0179530:three_prime_UTR 40.0%
TATGAATGATGCCCATGTTG+AGG - chr1_4:67075523-67075542 Msa0179540:CDS 40.0%
ACATATCATTATCCGCCACT+CGG + chr1_4:67075559-67075578 Msa0179530:three_prime_UTR 40.0%
TATGAATGATGCCCATGTTG+AGG - chr1_4:67075523-67075542 Msa0179540:CDS 40.0%
TCTTGACCAAAATCCTGTGT+CGG - chr1_4:67075805-67075824 Msa0179540:CDS 40.0%
CAAGACACGCCTTTGAATGT+TGG + chr1_4:67073689-67073708 Msa0179530:five_prime_UTR 45.0%
ACAATGTGGAGGACCAGAAT+TGG + chr1_4:67073780-67073799 Msa0179530:five_prime_UTR 45.0%
GTACACTCAAAGGATCTGCT+TGG + chr1_4:67074018-67074037 Msa0179530:five_prime_UTR 45.0%
TTGTGTCCATATGGGTCCAT+CGG - chr1_4:67074087-67074106 None:intergenic 45.0%
GTCAGTTTCAGCACTATCAC+CGG + chr1_4:67074408-67074427 Msa0179530:five_prime_UTR 45.0%
GAAACTGGCGTAAATCCTTC+CGG - chr1_4:67074430-67074449 Msa0179540:CDS 45.0%
CCCTCAGGCAAATTCACTAA+AGG + chr1_4:67074622-67074641 Msa0179530:five_prime_UTR 45.0%
CATGTCAAGGTTCTTGAAGC+TGG - chr1_4:67074649-67074668 Msa0179540:CDS 45.0%
CAGCTTCAAGAACCTTGACA+TGG + chr1_4:67074647-67074666 Msa0179530:five_prime_UTR 45.0%
! GAGAATCCACCACAGGATTT+TGG + chr1_4:67074716-67074735 Msa0179530:five_prime_UTR 45.0%
TCTTGACCAAAATCCTGTGG+TGG - chr1_4:67074725-67074744 Msa0179540:CDS 45.0%
AGGTCTTGACCAAAATCCTG+TGG - chr1_4:67074728-67074747 Msa0179540:CDS 45.0%
!! ACAGGATTTTGGTCAAGACC+TGG + chr1_4:67074727-67074746 Msa0179530:five_prime_UTR 45.0%
CTTCAGTGAGTTCATCTGAG+GGG - chr1_4:67074837-67074856 Msa0179540:CDS 45.0%
CCTTCAGTGAGTTCATCTGA+GGG - chr1_4:67074838-67074857 Msa0179540:CDS 45.0%
TCCTTCAGTGAGTTCATCTG+AGG - chr1_4:67074839-67074858 Msa0179540:CDS 45.0%
AGATGAACTCACTGAAGGAC+CGG + chr1_4:67074840-67074859 Msa0179530:five_prime_UTR 45.0%
GTCACTTGAGAATCCGTAAC+AGG + chr1_4:67074925-67074944 Msa0179530:five_prime_UTR 45.0%
GCATGACCGAAATCCTGTTA+CGG - chr1_4:67074941-67074960 Msa0179540:CDS 45.0%
CATGTCGAGGTTCTTGAATC+TGG - chr1_4:67075078-67075097 Msa0179540:CDS 45.0%
CAGATTCAAGAACCTCGACA+TGG + chr1_4:67075076-67075095 Msa0179530:exon 45.0%
! GAGAATCCGACACAGGATTT+TGG + chr1_4:67075148-67075167 Msa0179530:intron 45.0%
!! ACAGGATTTTGGTCAAGTCC+TGG + chr1_4:67075159-67075178 Msa0179530:intron 45.0%
!! CAGGATTTTGGTCAAGTCCT+GGG + chr1_4:67075160-67075179 Msa0179530:intron 45.0%
!! AGGATTTTGGTCAAGTCCTG+GGG + chr1_4:67075161-67075180 Msa0179530:intron 45.0%
TATGAATGATTCCCTTGGCG+AGG - chr1_4:67075307-67075326 Msa0179540:CDS 45.0%
GCTTGACCAAAATCCTGTGT+CGG - chr1_4:67075373-67075392 Msa0179540:CDS 45.0%
CATATCATTATCCGCCACTC+GGG + chr1_4:67075560-67075579 Msa0179530:three_prime_UTR 45.0%
AGCTTCGAGAACCTCAACAT+GGG + chr1_4:67075725-67075744 Msa0179530:three_prime_UTR 45.0%
TGTGTCGGATTCTCAAGTAG+TGG - chr1_4:67075790-67075809 Msa0179540:CDS 45.0%
ACTACTTGAGAATCCGACAC+AGG + chr1_4:67075789-67075808 Msa0179530:three_prime_UTR 45.0%
! GAGAATCCGACACAGGATTT+TGG + chr1_4:67075148-67075167 Msa0179530:intron 45.0%
!! ACAGGATTTTGGTCAAGACC+TGG + chr1_4:67074727-67074746 Msa0179530:five_prime_UTR 45.0%
ATGGTTGAACCTGCTTCTGA+GGG - chr1_4:67075870-67075889 Msa0179540:CDS 45.0%
CAAGACACGCCTTTGAATGT+TGG + chr1_4:67073689-67073708 Msa0179530:five_prime_UTR 45.0%
ACAATGTGGAGGACCAGAAT+TGG + chr1_4:67073780-67073799 Msa0179530:five_prime_UTR 45.0%
GTACACTCAAAGGATCTGCT+TGG + chr1_4:67074018-67074037 Msa0179530:five_prime_UTR 45.0%
TTGTGTCCATATGGGTCCAT+CGG - chr1_4:67074087-67074106 None:intergenic 45.0%
GTCAGTTTCAGCACTATCAC+CGG + chr1_4:67074408-67074427 Msa0179530:five_prime_UTR 45.0%
GAAACTGGCGTAAATCCTTC+CGG - chr1_4:67074430-67074449 Msa0179540:CDS 45.0%
CCCTCAGGCAAATTCACTAA+AGG + chr1_4:67074622-67074641 Msa0179530:five_prime_UTR 45.0%
CATGTCAAGGTTCTTGAAGC+TGG - chr1_4:67074649-67074668 Msa0179540:CDS 45.0%
CAGCTTCAAGAACCTTGACA+TGG + chr1_4:67074647-67074666 Msa0179530:five_prime_UTR 45.0%
! GAGAATCCACCACAGGATTT+TGG + chr1_4:67074716-67074735 Msa0179530:five_prime_UTR 45.0%
TCTTGACCAAAATCCTGTGG+TGG - chr1_4:67074725-67074744 Msa0179540:CDS 45.0%
AGGTCTTGACCAAAATCCTG+TGG - chr1_4:67074728-67074747 Msa0179540:CDS 45.0%
!! ACAGGATTTTGGTCAAGACC+TGG + chr1_4:67074727-67074746 Msa0179530:five_prime_UTR 45.0%
CTTCAGTGAGTTCATCTGAG+GGG - chr1_4:67074837-67074856 Msa0179540:CDS 45.0%
CCTTCAGTGAGTTCATCTGA+GGG - chr1_4:67074838-67074857 Msa0179540:CDS 45.0%
TCCTTCAGTGAGTTCATCTG+AGG - chr1_4:67074839-67074858 Msa0179540:CDS 45.0%
AGATGAACTCACTGAAGGAC+CGG + chr1_4:67074840-67074859 Msa0179530:five_prime_UTR 45.0%
GTCACTTGAGAATCCGTAAC+AGG + chr1_4:67074925-67074944 Msa0179530:five_prime_UTR 45.0%
GCATGACCGAAATCCTGTTA+CGG - chr1_4:67074941-67074960 Msa0179540:CDS 45.0%
CATGTCGAGGTTCTTGAATC+TGG - chr1_4:67075078-67075097 Msa0179540:CDS 45.0%
CAGATTCAAGAACCTCGACA+TGG + chr1_4:67075076-67075095 Msa0179530:exon 45.0%
! GAGAATCCGACACAGGATTT+TGG + chr1_4:67075148-67075167 Msa0179530:intron 45.0%
!! ACAGGATTTTGGTCAAGTCC+TGG + chr1_4:67075159-67075178 Msa0179530:intron 45.0%
!! CAGGATTTTGGTCAAGTCCT+GGG + chr1_4:67075160-67075179 Msa0179530:intron 45.0%
!! AGGATTTTGGTCAAGTCCTG+GGG + chr1_4:67075161-67075180 Msa0179530:intron 45.0%
TATGAATGATTCCCTTGGCG+AGG - chr1_4:67075307-67075326 Msa0179540:CDS 45.0%
GCTTGACCAAAATCCTGTGT+CGG - chr1_4:67075373-67075392 Msa0179540:CDS 45.0%
CATATCATTATCCGCCACTC+GGG + chr1_4:67075560-67075579 Msa0179530:three_prime_UTR 45.0%
AGCTTCGAGAACCTCAACAT+GGG + chr1_4:67075725-67075744 Msa0179530:three_prime_UTR 45.0%
TGTGTCGGATTCTCAAGTAG+TGG - chr1_4:67075790-67075809 Msa0179540:CDS 45.0%
ACTACTTGAGAATCCGACAC+AGG + chr1_4:67075789-67075808 Msa0179530:three_prime_UTR 45.0%
! GAGAATCCGACACAGGATTT+TGG + chr1_4:67075148-67075167 Msa0179530:intron 45.0%
!! ACAGGATTTTGGTCAAGACC+TGG + chr1_4:67074727-67074746 Msa0179530:five_prime_UTR 45.0%
ATGGTTGAACCTGCTTCTGA+GGG - chr1_4:67075870-67075889 Msa0179540:CDS 45.0%
GACACGCCTTTGAATGTTGG+TGG + chr1_4:67073692-67073711 Msa0179530:five_prime_UTR 50.0%
ATTACAGCAGCTTCACCCGA+TGG + chr1_4:67074068-67074087 Msa0179530:five_prime_UTR 50.0%
TGTGTCCATATGGGTCCATC+GGG - chr1_4:67074086-67074105 None:intergenic 50.0%
GTTTCAGCACTATCACCGGA+AGG + chr1_4:67074412-67074431 Msa0179530:five_prime_UTR 50.0%
TCTTTGGCATTGTTCCCCTC+AGG + chr1_4:67074607-67074626 Msa0179530:five_prime_UTR 50.0%
!! TGTGGTGGATTCTCAAGTGG+CGG - chr1_4:67074710-67074729 Msa0179540:CDS 50.0%
!! TCCTGTGGTGGATTCTCAAG+TGG - chr1_4:67074713-67074732 Msa0179540:CDS 50.0%
CCCTCAGATGAACTCACTGA+AGG + chr1_4:67074835-67074854 Msa0179530:five_prime_UTR 50.0%
CGTGATGAGGTTGTAGAAGC+CGG - chr1_4:67074862-67074881 Msa0179540:CDS 50.0%
CGGCTTCTACAACCTCATCA+CGG + chr1_4:67074860-67074879 Msa0179530:five_prime_UTR 50.0%
CTCTTTGGCATTGTTCGCCT+CGG + chr1_4:67075035-67075054 Msa0179530:five_prime_UTR 50.0%
TCCTTTAGCGAATTCGTCCG+AGG - chr1_4:67075055-67075074 Msa0179540:CDS 50.0%
AGCTTCAAGAACCTCGCCAA+GGG + chr1_4:67075293-67075312 Msa0179530:CDS 50.0%
! GAGAGTCCGACACAGGATTT+TGG + chr1_4:67075364-67075383 Msa0179530:CDS 50.0%
!! ACAGGATTTTGGTCAAGCCC+TGG + chr1_4:67075375-67075394 Msa0179530:CDS 50.0%
GCTAGACCAAAATCCCGTGT+CGG - chr1_4:67075589-67075608 Msa0179540:CDS 50.0%
CATGTTGAGGTTCTCGAAGC+TGG - chr1_4:67075726-67075745 Msa0179540:CDS 50.0%
CAGCTTCGAGAACCTCAACA+TGG + chr1_4:67075724-67075743 Msa0179530:three_prime_UTR 50.0%
TGGTTGAACCTGCTTCTGAG+GGG - chr1_4:67075869-67075888 Msa0179540:CDS 50.0%
CATGGTTGAACCTGCTTCTG+AGG - chr1_4:67075871-67075890 Msa0179540:CDS 50.0%
GACACGCCTTTGAATGTTGG+TGG + chr1_4:67073692-67073711 Msa0179530:five_prime_UTR 50.0%
ATTACAGCAGCTTCACCCGA+TGG + chr1_4:67074068-67074087 Msa0179530:five_prime_UTR 50.0%
TGTGTCCATATGGGTCCATC+GGG - chr1_4:67074086-67074105 None:intergenic 50.0%
GTTTCAGCACTATCACCGGA+AGG + chr1_4:67074412-67074431 Msa0179530:five_prime_UTR 50.0%
TCTTTGGCATTGTTCCCCTC+AGG + chr1_4:67074607-67074626 Msa0179530:five_prime_UTR 50.0%
!! TGTGGTGGATTCTCAAGTGG+CGG - chr1_4:67074710-67074729 Msa0179540:CDS 50.0%
!! TCCTGTGGTGGATTCTCAAG+TGG - chr1_4:67074713-67074732 Msa0179540:CDS 50.0%
CCCTCAGATGAACTCACTGA+AGG + chr1_4:67074835-67074854 Msa0179530:five_prime_UTR 50.0%
CGTGATGAGGTTGTAGAAGC+CGG - chr1_4:67074862-67074881 Msa0179540:CDS 50.0%
CGGCTTCTACAACCTCATCA+CGG + chr1_4:67074860-67074879 Msa0179530:five_prime_UTR 50.0%
CTCTTTGGCATTGTTCGCCT+CGG + chr1_4:67075035-67075054 Msa0179530:five_prime_UTR 50.0%
TCCTTTAGCGAATTCGTCCG+AGG - chr1_4:67075055-67075074 Msa0179540:CDS 50.0%
AGCTTCAAGAACCTCGCCAA+GGG + chr1_4:67075293-67075312 Msa0179530:CDS 50.0%
! GAGAGTCCGACACAGGATTT+TGG + chr1_4:67075364-67075383 Msa0179530:CDS 50.0%
!! ACAGGATTTTGGTCAAGCCC+TGG + chr1_4:67075375-67075394 Msa0179530:CDS 50.0%
GCTAGACCAAAATCCCGTGT+CGG - chr1_4:67075589-67075608 Msa0179540:CDS 50.0%
CATGTTGAGGTTCTCGAAGC+TGG - chr1_4:67075726-67075745 Msa0179540:CDS 50.0%
CAGCTTCGAGAACCTCAACA+TGG + chr1_4:67075724-67075743 Msa0179530:three_prime_UTR 50.0%
TGGTTGAACCTGCTTCTGAG+GGG - chr1_4:67075869-67075888 Msa0179540:CDS 50.0%
CATGGTTGAACCTGCTTCTG+AGG - chr1_4:67075871-67075890 Msa0179540:CDS 50.0%
! TCGCGATGTTCCCTTTTCCG+GGG - chr1_4:67073730-67073749 None:intergenic 55.0%
! GTCGCGATGTTCCCTTTTCC+GGG - chr1_4:67073731-67073750 None:intergenic 55.0%
! GGTCGCGATGTTCCCTTTTC+CGG - chr1_4:67073732-67073751 None:intergenic 55.0%
CTTCACCCGATGGACCCATA+TGG + chr1_4:67074078-67074097 Msa0179530:five_prime_UTR 55.0%
TGCTGGTGAGAGTTCCTTGC+AGG - chr1_4:67074545-67074564 Msa0179540:CDS 55.0%
GCCACTTGAGAATCCACCAC+AGG + chr1_4:67074709-67074728 Msa0179530:five_prime_UTR 55.0%
ACAGGATTTCGGTCATGCCC+TGG + chr1_4:67074943-67074962 Msa0179530:five_prime_UTR 55.0%
GCCTCGGACGAATTCGCTAA+AGG + chr1_4:67075051-67075070 Msa0179530:five_prime_UTR 55.0%
TGTGTCGGATTCTCGAGTGG+CGG - chr1_4:67075142-67075161 Msa0179540:CDS 55.0%
TCCTGTGTCGGATTCTCGAG+TGG - chr1_4:67075145-67075164 Msa0179540:CDS 55.0%
CTTGGCGAGGTTCTTGAAGC+TGG - chr1_4:67075294-67075313 Msa0179540:CDS 55.0%
CAGCTTCAAGAACCTCGCCA+AGG + chr1_4:67075292-67075311 Msa0179530:CDS 55.0%
TGTGTCGGACTCTCAAGTGG+TGG - chr1_4:67075358-67075377 Msa0179540:CDS 55.0%
ACCACTTGAGAGTCCGACAC+AGG + chr1_4:67075357-67075376 Msa0179530:CDS 55.0%
TCCTGTGTCGGACTCTCAAG+TGG - chr1_4:67075361-67075380 Msa0179540:CDS 55.0%
! GGGAATCCGACACGGGATTT+TGG + chr1_4:67075580-67075599 Msa0179530:three_prime_UTR 55.0%
!! ACGGGATTTTGGTCTAGCCC+TGG + chr1_4:67075591-67075610 Msa0179530:three_prime_UTR 55.0%
! TCGCGATGTTCCCTTTTCCG+GGG - chr1_4:67073730-67073749 None:intergenic 55.0%
! GTCGCGATGTTCCCTTTTCC+GGG - chr1_4:67073731-67073750 None:intergenic 55.0%
! GGTCGCGATGTTCCCTTTTC+CGG - chr1_4:67073732-67073751 None:intergenic 55.0%
CTTCACCCGATGGACCCATA+TGG + chr1_4:67074078-67074097 Msa0179530:five_prime_UTR 55.0%
TGCTGGTGAGAGTTCCTTGC+AGG - chr1_4:67074545-67074564 Msa0179540:CDS 55.0%
GCCACTTGAGAATCCACCAC+AGG + chr1_4:67074709-67074728 Msa0179530:five_prime_UTR 55.0%
ACAGGATTTCGGTCATGCCC+TGG + chr1_4:67074943-67074962 Msa0179530:five_prime_UTR 55.0%
GCCTCGGACGAATTCGCTAA+AGG + chr1_4:67075051-67075070 Msa0179530:five_prime_UTR 55.0%
TGTGTCGGATTCTCGAGTGG+CGG - chr1_4:67075142-67075161 Msa0179540:CDS 55.0%
TCCTGTGTCGGATTCTCGAG+TGG - chr1_4:67075145-67075164 Msa0179540:CDS 55.0%
CTTGGCGAGGTTCTTGAAGC+TGG - chr1_4:67075294-67075313 Msa0179540:CDS 55.0%
CAGCTTCAAGAACCTCGCCA+AGG + chr1_4:67075292-67075311 Msa0179530:CDS 55.0%
TGTGTCGGACTCTCAAGTGG+TGG - chr1_4:67075358-67075377 Msa0179540:CDS 55.0%
ACCACTTGAGAGTCCGACAC+AGG + chr1_4:67075357-67075376 Msa0179530:CDS 55.0%
TCCTGTGTCGGACTCTCAAG+TGG - chr1_4:67075361-67075380 Msa0179540:CDS 55.0%
! GGGAATCCGACACGGGATTT+TGG + chr1_4:67075580-67075599 Msa0179530:three_prime_UTR 55.0%
!! ACGGGATTTTGGTCTAGCCC+TGG + chr1_4:67075591-67075610 Msa0179530:three_prime_UTR 55.0%
! TGCATTGGCGACCCCGGAAA+AGG + chr1_4:67073716-67073735 Msa0179530:five_prime_UTR 60.0%
! GCATTGGCGACCCCGGAAAA+GGG + chr1_4:67073717-67073736 Msa0179530:five_prime_UTR 60.0%
GCCACTCGAGAATCCGACAC+AGG + chr1_4:67075141-67075160 Msa0179530:intron 60.0%
TGGGGTTTCCCCTCAGAAGC+AGG + chr1_4:67075858-67075877 Msa0179530:three_prime_UTR 60.0%
! TGCATTGGCGACCCCGGAAA+AGG + chr1_4:67073716-67073735 Msa0179530:five_prime_UTR 60.0%
! GCATTGGCGACCCCGGAAAA+GGG + chr1_4:67073717-67073736 Msa0179530:five_prime_UTR 60.0%
GCCACTCGAGAATCCGACAC+AGG + chr1_4:67075141-67075160 Msa0179530:intron 60.0%
TGGGGTTTCCCCTCAGAAGC+AGG + chr1_4:67075858-67075877 Msa0179530:three_prime_UTR 60.0%
! GGTGGATGCATTGGCGACCC+CGG + chr1_4:67073710-67073729 Msa0179530:five_prime_UTR 65.0%
CGTGTCGGATTCCCGAGTGG+CGG - chr1_4:67075574-67075593 Msa0179540:CDS 65.0%
CGCCACTCGGGAATCCGACA+CGG + chr1_4:67075572-67075591 Msa0179530:three_prime_UTR 65.0%
GCCACTCGGGAATCCGACAC+GGG + chr1_4:67075573-67075592 Msa0179530:three_prime_UTR 65.0%
TCCCGTGTCGGATTCCCGAG+TGG - chr1_4:67075577-67075596 Msa0179540:CDS 65.0%
! GGTGGATGCATTGGCGACCC+CGG + chr1_4:67073710-67073729 Msa0179530:five_prime_UTR 65.0%
CGTGTCGGATTCCCGAGTGG+CGG - chr1_4:67075574-67075593 Msa0179540:CDS 65.0%
CGCCACTCGGGAATCCGACA+CGG + chr1_4:67075572-67075591 Msa0179530:three_prime_UTR 65.0%
GCCACTCGGGAATCCGACAC+GGG + chr1_4:67075573-67075592 Msa0179530:three_prime_UTR 65.0%
TCCCGTGTCGGATTCCCGAG+TGG - chr1_4:67075577-67075596 Msa0179540:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 67073490 67075897 67073490 ID=Msa0179530;Name=Msa0179530
chr1_4 mRNA 67073490 67075897 67073490 ID=Msa0179530-mRNA-1;Parent=Msa0179530;Name=Msa0179530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=1605|0|0.5|1|0|0|2|477|68
chr1_4 exon 67073490 67075098 67073490 ID=Msa0179530-mRNA-1:exon:21996;Parent=Msa0179530-mRNA-1
chr1_4 exon 67075218 67075897 67075218 ID=Msa0179530-mRNA-1:exon:21997;Parent=Msa0179530-mRNA-1
chr1_4 five_prime_UTR 67073490 67075094 67073490 ID=Msa0179530-mRNA-1:five_prime_utr;Parent=Msa0179530-mRNA-1
chr1_4 CDS 67075095 67075098 67075095 ID=Msa0179530-mRNA-1:cds;Parent=Msa0179530-mRNA-1
chr1_4 CDS 67075218 67075420 67075218 ID=Msa0179530-mRNA-1:cds;Parent=Msa0179530-mRNA-1
chr1_4 three_prime_UTR 67075421 67075897 67075421 ID=Msa0179530-mRNA-1:three_prime_utr;Parent=Msa0179530-mRNA-1
Gene Sequence

>Msa0179530

ATGGAGCTGAACCAGAGACATCTACATTTTCATTATTCTCTTTGGTATTGTTCGCCTGAGATGAATTCACTAAAGGACCAGCTTCAAGAACCTCGCCAAGGGAATCATTCATATCAAACTTTTTTAAAGACAAATCATTATCCACCACTTGAGAGTCCGACACAGGATTTTGGTCAAGCCCTGGTGAATCACAATTCATATCAGTGA
Protein sequence

>Msa0179530

MELNQRHLHFHYSLWYCSPEMNSLKDQLQEPRQGNHSYQTFLKTNHYPPLESPTQDFGQALVNHNSYQ*