AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0796250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796250 MtrunA17_Chr5g0399251 95.882 340 14 0 12 351 874 1213 0.0 689
Msa0796250 MtrunA17_Chr4g0056111 80.117 342 64 3 12 351 718 1057 0.0 567
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796250 AT5G47490.3 67.941 340 108 1 12 350 699 1038 7.12e-165 488
Msa0796250 AT5G47490.2 67.941 340 108 1 12 350 699 1038 8.12e-162 488
Msa0796250 AT5G47490.1 67.941 340 108 1 12 350 699 1038 8.12e-162 488
Msa0796250 AT5G47480.2 61.584 341 99 4 12 351 706 1015 8.44e-143 431
Msa0796250 AT5G47480.1 61.584 341 99 4 12 351 706 1015 1.07e-140 432

Find 256 sgRNAs with CRISPR-Local

Find 605 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTATCCCAAGGCTAAAT+TGG 0.180148 5_3:-8319842 Msa0796250:intron
TTTGCATCTGCCAAGGTTAA+TGG 0.200138 5_3:-8323872 Msa0796250:five_prime_UTR
CATTAGCTGCACTATCTTCT+AGG 0.207049 5_3:+8318776 None:intergenic
TTGCAGAGCTTCCACCATTT+TGG 0.219748 5_3:+8318923 None:intergenic
TCAGCTGTCCCACTCACTTA+TGG 0.221495 5_3:+8320259 None:intergenic
AGCAACAATTCTTTGACTAT+TGG 0.245260 5_3:-8324593 Msa0796250:five_prime_UTR
AGTGGGCATCCTGGTGCTTT+TGG 0.246954 5_3:-8323300 Msa0796250:CDS
GGGACAGAGTTCACTCAATA+TGG 0.260001 5_3:-8323851 Msa0796250:five_prime_UTR
AAAATAGCTTGTCAGCATTA+TGG 0.260485 5_3:-8324389 Msa0796250:five_prime_UTR
CAGCTGTCCCACTCACTTAT+GGG 0.273870 5_3:+8320260 None:intergenic
GGAAAATTACGTTCTCCTTT+TGG 0.290937 5_3:-8324368 Msa0796250:five_prime_UTR
GTCATTGTTTGTGCGTGTTT+TGG 0.301527 5_3:+8318709 None:intergenic
TGCTAGTCCAGAAGCTATTC+AGG 0.306743 5_3:-8322801 Msa0796250:intron
TATTTCTGTGTTGAACTTGA+TGG 0.314035 5_3:-8324630 Msa0796250:five_prime_UTR
TGTACTCGGCTGAACCATTC+TGG 0.314143 5_3:+8319704 None:intergenic
TGTGCATATATAAGCTTATA+TGG 0.315343 5_3:+8320803 None:intergenic
GCACTTCGTCAGTTGGTTGC+AGG 0.321136 5_3:-8323399 Msa0796250:CDS
TTTAGTTCCGTCTGCTTCTC+TGG 0.326457 5_3:-8320285 Msa0796250:CDS
AGAAATGTGGCCTCCTGTTT+AGG 0.329051 5_3:-8318105 Msa0796250:three_prime_UTR
CAGCTACCATATCAGGATTA+TGG 0.332747 5_3:-8318146 Msa0796250:three_prime_UTR
GTTGACACCTTCAACCAAAA+TGG 0.334638 5_3:-8318937 Msa0796250:three_prime_UTR
GCTGCAAGACTTTGCCTAAT+AGG 0.335542 5_3:-8322854 Msa0796250:CDS
TAAGCCTTCAGGGGCAGCTT+TGG 0.335683 5_3:-8318542 Msa0796250:three_prime_UTR
CAAATTACCTGAATAGCTTC+TGG 0.336644 5_3:+8322794 None:intergenic
CTTGGGCTTCTACCAATATC+TGG 0.347428 5_3:+8320193 None:intergenic
TTGCATCTGCCAAGGTTAAT+GGG 0.349123 5_3:-8323871 Msa0796250:five_prime_UTR
CTTGTGCTCGAGAACTCATT+TGG 0.349677 5_3:+8319646 None:intergenic
ATAGGTGAAATTAAGCCTTC+AGG 0.349690 5_3:-8318553 Msa0796250:three_prime_UTR
CTTTGTCCTTGATCTGTTTG+AGG 0.350672 5_3:+8318019 None:intergenic
TGTTTCCACGTTTCTACTTC+CGG 0.352570 5_3:+8320627 None:intergenic
AAGCCTTCAGGGGCAGCTTT+GGG 0.352703 5_3:-8318541 Msa0796250:three_prime_UTR
TGAAGACTGGGAGGAAAATC+TGG 0.357023 5_3:-8323101 Msa0796250:CDS
ATCATCAAGTGAGCAGAATA+TGG 0.357717 5_3:-8318818 Msa0796250:three_prime_UTR
GGCTCTGAAACACTTCTATT+AGG 0.358952 5_3:+8320214 None:intergenic
CAAGGAAAAGTCCAGGTATC+AGG 0.364877 5_3:-8320050 Msa0796250:three_prime_UTR
TTGGTCGCCCAGCAATTAAA+AGG 0.369164 5_3:+8323355 None:intergenic
TTGACCCCAGCTACCATATC+AGG 0.370659 5_3:-8318153 Msa0796250:three_prime_UTR
CATACATGTATAAATACTTA+AGG 0.375735 5_3:+8317913 None:intergenic
TCATTTGTGGAAGATGTAGA+AGG 0.376112 5_3:+8318748 None:intergenic
CATTACAAGTTCGTCACCTT+TGG 0.379507 5_3:+8323057 None:intergenic
TGCGGGTAACATCTCAAAAC+AGG 0.380301 5_3:-8318668 Msa0796250:three_prime_UTR
AGCTGAAGTGGGAAAGGTTT+CGG 0.380984 5_3:-8320774 Msa0796250:CDS
CCAACACTACCACCAACTAA+TGG 0.388685 5_3:+8324518 None:intergenic
ATTCTCGTCGAACAGCTTCA+TGG 0.391917 5_3:-8318612 Msa0796250:three_prime_UTR
TCCAGTGATCTGCTCCTATT+AGG 0.393562 5_3:+8322840 None:intergenic
CTCGCAGTCGTTTAGGTGTT+CGG 0.396667 5_3:-8319558 Msa0796250:three_prime_UTR
TTCTCTGCTCGCAGTCGTTT+AGG 0.396919 5_3:-8319565 Msa0796250:three_prime_UTR
TCAGTAGGGAATACATCATT+TGG 0.398926 5_3:+8323336 None:intergenic
TGGTGGTAGTGTTGGAAGTA+AGG 0.401369 5_3:-8324510 Msa0796250:five_prime_UTR
AAGAGAATGGGAACGGGGAA+TGG 0.402890 5_3:+8318278 None:intergenic
GTACTGAAATCCTTGAAAAC+TGG 0.403094 5_3:-8320657 Msa0796250:CDS
TTAGCTCCTGCAAAATTAGT+TGG 0.404714 5_3:-8320470 Msa0796250:CDS
CCAGTTCCATAATCCTGATA+TGG 0.407167 5_3:+8318140 None:intergenic
CTAAAGAACCATCAGTAACT+TGG 0.409396 5_3:+8316544 None:intergenic
ATGAAGCTGTTCGACGAGAA+TGG 0.410285 5_3:+8318614 None:intergenic
CATAATCCTGATATGGTAGC+TGG 0.411803 5_3:+8318147 None:intergenic
CTACATCTTCCACAAATGAT+TGG 0.412185 5_3:-8318744 Msa0796250:three_prime_UTR
ATGGACCTGGGAAAGATTGC+TGG 0.415785 5_3:+8324537 None:intergenic
CTTGTTCTTGCTTCACAACT+CGG 0.416142 5_3:-8323600 Msa0796250:CDS
AGTGTTTCAGAGCCAGATAT+TGG 0.416982 5_3:-8320205 Msa0796250:three_prime_UTR
TCATCACAAGGAACTGTTCA+TGG 0.419467 5_3:-8320377 Msa0796250:CDS
CTCTATCCCAAGGCTAAATT+GGG 0.426834 5_3:-8319841 Msa0796250:intron
CTAATTGAGGTTTCTTCAGT+AGG 0.431325 5_3:+8323321 None:intergenic
ACATCTCCAGGTCGGGAGTT+GGG 0.431413 5_3:+8318237 None:intergenic
GGTGGTATCGGTGGCATCCC+TGG 0.433485 5_3:+8319601 None:intergenic
ATGGGAACGGGGAATGGAGA+TGG 0.434924 5_3:+8318284 None:intergenic
TGAACAAATGAGTCCTAAAC+AGG 0.437911 5_3:+8318092 None:intergenic
CAAGGACAAAGTATAGTTCA+TGG 0.439162 5_3:-8318007 Msa0796250:three_prime_UTR
CCATATCAGGATTATGGAAC+TGG 0.440876 5_3:-8318140 Msa0796250:three_prime_UTR
TGCTTCACAACTCGGTGAGC+AGG 0.441111 5_3:-8323592 Msa0796250:intron
ACAACTGCTGCTTTCCAGAA+TGG 0.442628 5_3:-8319718 Msa0796250:three_prime_UTR
CAGTAGTCACACACCTGTCT+TGG 0.444830 5_3:+8320175 None:intergenic
CTTCTTGTCTCTGCAAAAGA+TGG 0.445983 5_3:-8323667 Msa0796250:CDS
AGTCTTGAGATCTGGAAAAC+AGG 0.447797 5_3:-8319965 Msa0796250:intron
AGTAGTCACACACCTGTCTT+GGG 0.449822 5_3:+8320176 None:intergenic
TTGACTATTGGAAATGCTAC+TGG 0.450095 5_3:-8324581 Msa0796250:five_prime_UTR
TAGGTGAAATTAAGCCTTCA+GGG 0.450328 5_3:-8318552 Msa0796250:three_prime_UTR
GCCTAATAGGAGCAGATCAC+TGG 0.450952 5_3:-8322841 Msa0796250:CDS
TTTGCATTGGCGGGAAGAGC+AGG 0.451814 5_3:+8318865 None:intergenic
ACCAGGATGCCCACTAATTG+AGG 0.454013 5_3:+8323308 None:intergenic
GGCATCCCTGGACTAAGTTC+AGG 0.454056 5_3:+8319613 None:intergenic
CTTGAAAACTGGCCGTGCTC+CGG 0.454177 5_3:-8320646 Msa0796250:CDS
CTAATGATATGCTTGAAGAC+TGG 0.454306 5_3:-8323114 Msa0796250:CDS
TCTTTCCCAGGTCCATTAGT+TGG 0.455656 5_3:-8324530 Msa0796250:five_prime_UTR
CCTTTCTTATAATCCATGTC+AGG 0.458304 5_3:+8324443 None:intergenic
TCTCTAGAAGTACGGAATAG+TGG 0.461229 5_3:-8318343 Msa0796250:three_prime_UTR
GCAGTTGTCGGAGGTGGTGG+TGG 0.463209 5_3:+8319733 None:intergenic
TCTGAGAAGAGAATGGGAAC+GGG 0.464059 5_3:+8318272 None:intergenic
GGCAGAGCAGCTTCTTCAGC+TGG 0.466814 5_3:+8319754 None:intergenic
AAGAAACAAAATGCCCTGCC+AGG 0.468826 5_3:-8318053 Msa0796250:three_prime_UTR
GTCGTTTAGGTGTTCGGTCA+AGG 0.468852 5_3:-8319552 Msa0796250:intron
TCAAGTCCTGAACTTAGTCC+AGG 0.469451 5_3:-8319619 Msa0796250:three_prime_UTR
GTGGGGCTAGTCTTGAGATC+TGG 0.472628 5_3:-8319973 Msa0796250:three_prime_UTR
TGAAGCTGTTCGACGAGAAT+GGG 0.473056 5_3:+8318615 None:intergenic
TTTGAGATGTTACCCGCACT+TGG 0.473888 5_3:+8318673 None:intergenic
TTTGAGGCCATCTTTCTCCC+TGG 0.474702 5_3:+8318035 None:intergenic
TTCTAGAGAAATGCAGAAGC+AGG 0.475555 5_3:+8318357 None:intergenic
TGCATTAAAGATGAAGGATC+AGG 0.480070 5_3:+8318496 None:intergenic
CTTGATGATGGTACAGGAGC+TGG 0.480096 5_3:+8318832 None:intergenic
TATGAATATTCAAAGCTGCT+TGG 0.482385 5_3:-8320857 Msa0796250:CDS
GCAGCAGTTGTCGGAGGTGG+TGG 0.482544 5_3:+8319730 None:intergenic
TATGCCTCAGCAGTCTGAAC+AGG 0.484062 5_3:-8323277 Msa0796250:intron
TCTTTAGCAATAAGAATTTG+TGG 0.485614 5_3:-8316528 Msa0796250:three_prime_UTR
GAGACTTAGGACCCACCAAC+AGG 0.487487 5_3:-8320583 Msa0796250:intron
ACTGAAGAAACCTCAATTAG+TGG 0.487645 5_3:-8323318 Msa0796250:CDS
TAATGATATGCTTGAAGACT+GGG 0.487778 5_3:-8323113 Msa0796250:CDS
ACCTCAATTAGTGGGCATCC+TGG 0.488646 5_3:-8323309 Msa0796250:CDS
AACTTGATGGAAGCTGTAAC+GGG 0.488695 5_3:-8324617 Msa0796250:five_prime_UTR
CCATTAGTTGGTGGTAGTGT+TGG 0.490132 5_3:-8324518 Msa0796250:five_prime_UTR
TTCTGGAAAGCAGCAGTTGT+CGG 0.491420 5_3:+8319721 None:intergenic
AAAGTTGAAGAGATGGGTAG+AGG 0.493324 5_3:-8319791 Msa0796250:three_prime_UTR
CCTGACATGGATTATAAGAA+AGG 0.493675 5_3:-8324443 Msa0796250:five_prime_UTR
TGATTTGAGCTAGGTGGTAT+CGG 0.498178 5_3:+8319589 None:intergenic
TACATCTCCAGGTCGGGAGT+TGG 0.498201 5_3:+8318236 None:intergenic
GGCCATCTTTCTCCCTGGCA+GGG 0.498236 5_3:+8318040 None:intergenic
AGCACTGCCCATCGGGTTGT+TGG 0.499019 5_3:-8320425 Msa0796250:CDS
TTCCCAGGTCCATTAGTTGG+TGG 0.499459 5_3:-8324527 Msa0796250:five_prime_UTR
TGAACAACATTACCAGCATA+TGG 0.500376 5_3:-8320351 Msa0796250:CDS
ATGCCCAAAGCTGCCCCTGA+AGG 0.500612 5_3:+8318538 None:intergenic
TTTCCTTGTGCATCAGGCGA+TGG 0.500743 5_3:+8320065 None:intergenic
ATACATGTATAAATACTTAA+GGG 0.501055 5_3:+8317914 None:intergenic
TTGAAGAGATGGGTAGAGGA+AGG 0.502611 5_3:-8319787 Msa0796250:three_prime_UTR
TAATCTTACATCTCCAGGTC+GGG 0.504684 5_3:+8318230 None:intergenic
ATACTCTTGGTGCCATATGC+TGG 0.506125 5_3:+8320339 None:intergenic
GGATCAGGCATAAACGTTGA+TGG 0.506337 5_3:+8318511 None:intergenic
GTGGTCTGCTCACTTGATAG+TGG 0.507146 5_3:-8318204 Msa0796250:three_prime_UTR
AGCTTTGCAACTGCTGACTC+AGG 0.508367 5_3:+8323896 None:intergenic
AAAACTGAAACAAATACAAA+AGG 0.511521 5_3:+8317962 None:intergenic
GAAGTAAGGAGCTGTACAAA+TGG 0.512650 5_3:-8324496 Msa0796250:five_prime_UTR
AAATCTGCATTGAAGACAGA+AGG 0.513307 5_3:-8319676 Msa0796250:three_prime_UTR
CACTTCGTCAGTTGGTTGCA+GGG 0.513561 5_3:-8323398 Msa0796250:CDS
ATGATCTTATGATGTAATGA+TGG 0.514366 5_3:-8317893 Msa0796250:three_prime_UTR
TAATTGAGGTTTCTTCAGTA+GGG 0.515718 5_3:+8323322 None:intergenic
GTGCACAAGAAGGGCAATTG+TGG 0.516681 5_3:-8323632 Msa0796250:CDS
ACTGCCCATCGGGTTGTTGG+TGG 0.516697 5_3:-8320422 Msa0796250:CDS
TGCACAAGAAGGGCAATTGT+GGG 0.519049 5_3:-8323631 Msa0796250:CDS
CACTTCATTTGTTCTTCAGA+AGG 0.522565 5_3:+8323801 None:intergenic
AGATGGCCTCAAACAGATCA+AGG 0.523302 5_3:-8318025 Msa0796250:three_prime_UTR
CTACCACCAACTAATGGACC+TGG 0.523419 5_3:+8324524 None:intergenic
GCAAATGGCACTTCGTCAGT+TGG 0.525220 5_3:-8323406 Msa0796250:CDS
ATGACGAAAAGTTGAAGAGA+TGG 0.525648 5_3:-8319798 Msa0796250:three_prime_UTR
GACTGGCTAGTGGATACTCT+TGG 0.526332 5_3:+8320326 None:intergenic
CCTTGTGATGATGTTGGAGC+AGG 0.526370 5_3:+8320389 None:intergenic
AAAGTTCCCAACTCCCGACC+TGG 0.528028 5_3:-8318243 Msa0796250:three_prime_UTR
TTATCTGAAGGATTCGTACA+AGG 0.529151 5_3:-8324656 None:intergenic
AGTTCTATGTTGATACAGTA+AGG 0.529672 5_3:-8323428 Msa0796250:CDS
TGATCCTTCATCTTTAATGC+AGG 0.530278 5_3:-8318494 Msa0796250:three_prime_UTR
GCTTTACAGCGTGCACAAGA+AGG 0.530611 5_3:-8323642 Msa0796250:CDS
TAGTATGTATCCGTACCAAA+AGG 0.531165 5_3:+8324353 None:intergenic
ATAATCCTGATATGGTAGCT+GGG 0.531201 5_3:+8318148 None:intergenic
TATTGGTAGAAGCCCAAGAC+AGG 0.531621 5_3:-8320188 Msa0796250:intron
TAGCTCTCGAGGAGAGACTT+AGG 0.532514 5_3:-8320596 Msa0796250:CDS
TCTGCATTTCTCTAGAAGTA+CGG 0.535091 5_3:-8318351 Msa0796250:three_prime_UTR
TGACGAAAAGTTGAAGAGAT+GGG 0.537133 5_3:-8319797 Msa0796250:three_prime_UTR
TGTTGATACAGTAAGGCAAA+TGG 0.537899 5_3:-8323421 Msa0796250:CDS
ATATTCTGCTCACTTGATGA+TGG 0.539253 5_3:+8318820 None:intergenic
GGCAGGGAAGTACCTGTTGG+TGG 0.540116 5_3:+8320571 None:intergenic
ACAGTTAATCTTACATCTCC+AGG 0.541361 5_3:+8318225 None:intergenic
GTGATGCACCTCCTGATACC+TGG 0.541890 5_3:+8320039 None:intergenic
CCTACGAGAAGTGGTAGTTT+CGG 0.542075 5_3:-8318469 Msa0796250:three_prime_UTR
AAAGCAGCAGTTGTCGGAGG+TGG 0.542821 5_3:+8319727 None:intergenic
TGCACATATGCTAGCTGAAG+TGG 0.545966 5_3:-8320786 Msa0796250:CDS
AGTAAACTTCTCGTCATACT+CGG 0.546399 5_3:-8322879 Msa0796250:CDS
ATGCAAAGGTTTCCAAGTGC+GGG 0.549058 5_3:-8318685 Msa0796250:three_prime_UTR
TGCTCACTTGATGATGGTAC+AGG 0.549139 5_3:+8318826 None:intergenic
GGACAGAGTTCACTCAATAT+GGG 0.549973 5_3:-8323850 Msa0796250:five_prime_UTR
TGTAATGATGGGGCAAGGGA+AGG 0.551088 5_3:-8317881 Msa0796250:three_prime_UTR
TCAAGGATTTCAGTACTGCT+TGG 0.552500 5_3:+8320664 None:intergenic
GAACTTGATGGAAGCTGTAA+CGG 0.552855 5_3:-8324618 Msa0796250:five_prime_UTR
TGTGAAGCAAGAACAAGTGC+AGG 0.552944 5_3:+8323606 None:intergenic
ATCGTATGACCAATCATTTG+TGG 0.553639 5_3:+8318735 None:intergenic
GGTTTCACAGATTGAACGGA+AGG 0.555536 5_3:+8318886 None:intergenic
AGCAGGTTTCACAGATTGAA+CGG 0.556401 5_3:+8318882 None:intergenic
CTAAGCCAGCAATCTTTCCC+AGG 0.557004 5_3:-8324542 Msa0796250:five_prime_UTR
GCAGAGAATTGATTTGAGCT+AGG 0.557775 5_3:+8319580 None:intergenic
AGTAGAAACGTGGAAACAGC+TGG 0.558094 5_3:-8320622 Msa0796250:CDS
CTTTACAGCGTGCACAAGAA+GGG 0.559097 5_3:-8323641 Msa0796250:CDS
GGCGCCTGCATTAAAGATGA+AGG 0.560534 5_3:+8318490 None:intergenic
TTTCACAGATTGAACGGAAG+GGG 0.560684 5_3:+8318888 None:intergenic
TATGATGTAATGATGGGGCA+AGG 0.561188 5_3:-8317886 Msa0796250:three_prime_UTR
GCAATAATCCAAGTTACTGA+TGG 0.561255 5_3:-8316552 Msa0796250:three_prime_UTR
TGTGATGATGTTGGAGCAGG+TGG 0.561516 5_3:+8320392 None:intergenic
CATTTGTGGAAGATGTAGAA+GGG 0.561879 5_3:+8318749 None:intergenic
GACAGCTGACAATAATAGAA+TGG 0.562730 5_3:-8320245 Msa0796250:exon
TTCTGAGAAGAGAATGGGAA+CGG 0.563855 5_3:+8318271 None:intergenic
GATGATGTTGGAGCAGGTGG+TGG 0.565787 5_3:+8320395 None:intergenic
TGGTCTGCTCACTTGATAGT+GGG 0.566537 5_3:-8318203 Msa0796250:three_prime_UTR
TGCACCTTGGTGATTGCTTG+TGG 0.567445 5_3:-8323033 Msa0796250:CDS
CTTGTCTCTGCAAAAGATGG+AGG 0.568437 5_3:-8323664 Msa0796250:CDS
TGCCCTGCCAGGGAGAAAGA+TGG 0.569709 5_3:-8318042 Msa0796250:three_prime_UTR
CGCACTTGGAAACCTTTGCA+TGG 0.575144 5_3:+8318687 None:intergenic
CTGAAGAAACCTCAATTAGT+GGG 0.582554 5_3:-8323317 Msa0796250:CDS
TGATCTTATGATGTAATGAT+GGG 0.585436 5_3:-8317892 Msa0796250:three_prime_UTR
GAATAGTGGAACACATCAGA+TGG 0.586244 5_3:-8318329 Msa0796250:three_prime_UTR
GCAGGGAAGTACCTGTTGGT+GGG 0.586382 5_3:+8320572 None:intergenic
ATGCAGGCGCCTACGAGAAG+TGG 0.590594 5_3:-8318478 Msa0796250:three_prime_UTR
CATGCAAAGGTTTCCAAGTG+CGG 0.591838 5_3:-8318686 Msa0796250:three_prime_UTR
TATGCTAGCTGAAGTGGGAA+AGG 0.592204 5_3:-8320780 Msa0796250:CDS
CTCTGGAACCCATAAGTGAG+TGG 0.594307 5_3:-8320268 Msa0796250:CDS
TGATGCACAAGGAAAAGTCC+AGG 0.598193 5_3:-8320057 Msa0796250:three_prime_UTR
AGAAACAAAATGCCCTGCCA+GGG 0.598796 5_3:-8318052 Msa0796250:three_prime_UTR
ACAGTTCCTTGTGATGATGT+TGG 0.599070 5_3:+8320383 None:intergenic
CGTCGAACAGCTTCATGGAG+TGG 0.599223 5_3:-8318607 Msa0796250:three_prime_UTR
ATGATGTAATGATGGGGCAA+GGG 0.600707 5_3:-8317885 Msa0796250:three_prime_UTR
GAACTCTGTCCCATTAACCT+TGG 0.602412 5_3:+8323862 None:intergenic
TGTACAAATGGTTAGATGAG+AGG 0.607302 5_3:-8324484 Msa0796250:five_prime_UTR
ACGTTTCTACTTCCGGAGCA+CGG 0.607687 5_3:+8320634 None:intergenic
TCTGGACTAGCATAAGTTCG+AGG 0.609227 5_3:+8322812 None:intergenic
CCTTGGTGATTGCTTGTGGA+AGG 0.611978 5_3:-8323029 Msa0796250:CDS
TCAAAACAGGGGCAGACAGA+TGG 0.613519 5_3:-8318655 Msa0796250:three_prime_UTR
TACCACCAACTAATGGACCT+GGG 0.613582 5_3:+8324525 None:intergenic
TCGCCATCGCCTGATGCACA+AGG 0.616325 5_3:-8320068 Msa0796250:three_prime_UTR
TGGATTATAAGAAAGGTGAA+AGG 0.616996 5_3:-8324436 Msa0796250:five_prime_UTR
CAAGTCCTGAACTTAGTCCA+GGG 0.617029 5_3:-8319618 Msa0796250:three_prime_UTR
TTAATCTTACATCTCCAGGT+CGG 0.618967 5_3:+8318229 None:intergenic
GAGAATTGATTTGAGCTAGG+TGG 0.619246 5_3:+8319583 None:intergenic
TCTAGAGAAATGCAGAAGCA+GGG 0.620003 5_3:+8318358 None:intergenic
TTTCGGTGAAGATCTTCAAG+AGG 0.623993 5_3:-8318452 Msa0796250:three_prime_UTR
GACCATTGTTGACTGGCTAG+TGG 0.624042 5_3:+8320316 None:intergenic
ATAACTGCAAACAGAACCAA+AGG 0.625996 5_3:-8323073 Msa0796250:CDS
ATGACATGACCATTGTTGAC+TGG 0.629567 5_3:+8320309 None:intergenic
GCACAAGAAGGGCAATTGTG+GGG 0.631038 5_3:-8323630 Msa0796250:CDS
TAAACCACCAACAACCCGAT+GGG 0.631309 5_3:+8320418 None:intergenic
GCACATATGCTAGCTGAAGT+GGG 0.631689 5_3:-8320785 Msa0796250:CDS
GTAAACCACCAACAACCCGA+TGG 0.631831 5_3:+8320417 None:intergenic
CACAAACAATGACCATGCAA+AGG 0.632476 5_3:-8318699 Msa0796250:three_prime_UTR
TCTGGAACCCATAAGTGAGT+GGG 0.633243 5_3:-8320267 Msa0796250:CDS
TAATCCTGATATGGTAGCTG+GGG 0.635200 5_3:+8318149 None:intergenic
ACGCTACGAATCACCTGACA+TGG 0.635379 5_3:-8324456 Msa0796250:five_prime_UTR
GCGGGTAACATCTCAAAACA+GGG 0.640494 5_3:-8318667 Msa0796250:three_prime_UTR
CTGAGAAGAGAATGGGAACG+GGG 0.644389 5_3:+8318273 None:intergenic
GTTTCACAGATTGAACGGAA+GGG 0.645706 5_3:+8318887 None:intergenic
ATCCACTAGCCAGTCAACAA+TGG 0.645833 5_3:-8320318 Msa0796250:CDS
ACAGCTGGTATTAGCTCTCG+AGG 0.646535 5_3:-8320607 Msa0796250:CDS
GACACCTTCAACCAAAATGG+TGG 0.647619 5_3:-8318934 Msa0796250:three_prime_UTR
TGAGGCATACCAAAAGCACC+AGG 0.654884 5_3:+8323291 None:intergenic
AAAAGGCATAATGTGCGTAG+AGG 0.656288 5_3:+8323372 None:intergenic
CCTGCTCCAACATCATCACA+AGG 0.657946 5_3:-8320389 Msa0796250:CDS
TCAGGCATAAACGTTGATGG+TGG 0.660889 5_3:+8318514 None:intergenic
TGATATGCTTGAAGACTGGG+AGG 0.663980 5_3:-8323110 Msa0796250:CDS
TGGAAAGCAGCAGTTGTCGG+AGG 0.666793 5_3:+8319724 None:intergenic
CCTTCCACAAGCAATCACCA+AGG 0.673714 5_3:+8323029 None:intergenic
CCGAAACTACCACTTCTCGT+AGG 0.676272 5_3:+8318469 None:intergenic
AGGTGAAATTAAGCCTTCAG+GGG 0.676523 5_3:-8318551 Msa0796250:three_prime_UTR
TGGAGATGTAAGATTAACTG+TGG 0.679557 5_3:-8318223 Msa0796250:three_prime_UTR
ATCAAGTGAGCAGAATATGG+AGG 0.680282 5_3:-8318815 Msa0796250:three_prime_UTR
GGAAAAGTCCAGGTATCAGG+AGG 0.681507 5_3:-8320047 Msa0796250:three_prime_UTR
ACAAATGAGTCCTAAACAGG+AGG 0.681646 5_3:+8318095 None:intergenic
TTTGAGCTAGGTGGTATCGG+TGG 0.686428 5_3:+8319592 None:intergenic
ATTACCTGTTCAGACTGCTG+AGG 0.703854 5_3:+8323273 None:intergenic
ATGGGTTCCAGAGAAGCAGA+CGG 0.704117 5_3:+8320278 None:intergenic
GATCTTATGATGTAATGATG+GGG 0.704125 5_3:-8317891 Msa0796250:three_prime_UTR
GAACTTGTAATGATGCACCT+TGG 0.720739 5_3:-8323046 Msa0796250:CDS
CGGGTAACATCTCAAAACAG+GGG 0.722417 5_3:-8318666 Msa0796250:three_prime_UTR
GTGCTCCGGAAGTAGAAACG+TGG 0.733592 5_3:-8320632 Msa0796250:CDS
GTGTCTGATAGCAAGAAATG+TGG 0.734550 5_3:-8318118 Msa0796250:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAAAATAAAATTGATTA+TGG + chr5_3:8318998-8319017 None:intergenic 10.0%
!!! AATCAATTTTATTTTTATGT+CGG - chr5_3:8318999-8319018 Msa0796250:intron 10.0%
!!! TAATTTAAAATTTGTATGAA+TGG - chr5_3:8319206-8319225 Msa0796250:intron 10.0%
!!! TTTTAGATTATAAAATTTGA+AGG - chr5_3:8321757-8321776 Msa0796250:intron 10.0%
!! TTAAAGTTCTATTTAATTAA+GGG - chr5_3:8321876-8321895 Msa0796250:intron 10.0%
!!! ATAAAACATATATTTTTCAT+GGG + chr5_3:8322135-8322154 None:intergenic 10.0%
!!! TATTTTTAGTGTAAAATCTT+AGG - chr5_3:8316955-8316974 Msa0796250:intron 15.0%
!!! TATTAAACATTCTGAAATTT+TGG + chr5_3:8317608-8317627 None:intergenic 15.0%
!! AATGATTAAGAATTAATGAA+GGG + chr5_3:8320620-8320639 None:intergenic 15.0%
!! AAATGATTAAGAATTAATGA+AGG + chr5_3:8320621-8320640 None:intergenic 15.0%
!! ATTAAAACTTGAAAAAAATC+TGG - chr5_3:8321059-8321078 Msa0796250:intron 15.0%
!! CTTAAAGTTCTATTTAATTA+AGG - chr5_3:8321875-8321894 Msa0796250:intron 15.0%
!! TAAAGTTCTATTTAATTAAG+GGG - chr5_3:8321877-8321896 Msa0796250:intron 15.0%
!!! GATAAAACATATATTTTTCA+TGG + chr5_3:8322136-8322155 None:intergenic 15.0%
!! AATATTGATGAAATTGTTTA+TGG - chr5_3:8322195-8322214 Msa0796250:intron 15.0%
!! ATACATGTATAAATACTTAA+GGG + chr5_3:8323256-8323275 None:intergenic 15.0%
!!! TTTAAAATAGATATGGTTAA+TGG + chr5_3:8323490-8323509 None:intergenic 15.0%
!!! TGGTTTTAGTAAAATATTAT+CGG + chr5_3:8324190-8324209 None:intergenic 15.0%
!! CACTACAATTAAATTTAAAA+AGG - chr5_3:8324291-8324310 Msa0796250:intron 15.0%
!!! TTAACTGATTTTGAATATCT+AGG - chr5_3:8317439-8317458 Msa0796250:intron 20.0%
!! ATTAATTAACAAGAAAACTG+TGG + chr5_3:8319108-8319127 None:intergenic 20.0%
!! TTTCTTGTTAATTAATTGTG+AGG - chr5_3:8319112-8319131 Msa0796250:intron 20.0%
!!! TTACTATATTTTATTGCTAC+AGG + chr5_3:8319457-8319476 None:intergenic 20.0%
!!! CTGACAAATAGATTTTTTTT+GGG + chr5_3:8319903-8319922 None:intergenic 20.0%
!!! ACTGACAAATAGATTTTTTT+TGG + chr5_3:8319904-8319923 None:intergenic 20.0%
!! TTCATATATGATTTATGACA+GGG - chr5_3:8319959-8319978 Msa0796250:intron 20.0%
!! AATAGAACAGAATAAATGTA+TGG + chr5_3:8321242-8321261 None:intergenic 20.0%
!! CAATATAACTAAAACAAAAG+TGG + chr5_3:8321694-8321713 None:intergenic 20.0%
!! ATCTATGAATCATTATAGAA+TGG - chr5_3:8321716-8321735 Msa0796250:intron 20.0%
!! TCTATGAATCATTATAGAAT+GGG - chr5_3:8321717-8321736 Msa0796250:intron 20.0%
!!! AATAGAACTTTAAGAAATAG+AGG + chr5_3:8321869-8321888 None:intergenic 20.0%
!! CTCATAAAATATTAGAGATA+GGG + chr5_3:8321978-8321997 None:intergenic 20.0%
!! AACTCTATATTATAACACTT+GGG + chr5_3:8322003-8322022 None:intergenic 20.0%
!! AAACTCTATATTATAACACT+TGG + chr5_3:8322004-8322023 None:intergenic 20.0%
!!! TTATAATATAGAGTTTTGTC+TGG - chr5_3:8322008-8322027 Msa0796250:intron 20.0%
!!! TTTCTACATTCATTTAAGTT+AGG + chr5_3:8322042-8322061 None:intergenic 20.0%
!!! TTTTGATCATCAGAATAATT+GGG - chr5_3:8322782-8322801 Msa0796250:intron 20.0%
!! AAAACTGAAACAAATACAAA+AGG + chr5_3:8323208-8323227 None:intergenic 20.0%
!! CATACATGTATAAATACTTA+AGG + chr5_3:8323257-8323276 None:intergenic 20.0%
!! TTGTTATCAAAATAATGGTT+CGG + chr5_3:8323414-8323433 None:intergenic 20.0%
!! GTGAATTGTTATCAAAATAA+TGG + chr5_3:8323419-8323438 None:intergenic 20.0%
!!! GCTGATTTTTAAAATAGATA+TGG + chr5_3:8323497-8323516 None:intergenic 20.0%
!!! TTTAAATCTCTAAAATACAC+AGG - chr5_3:8323988-8324007 Msa0796250:intron 20.0%
!!! TTTAAATCTCTAAAATACAC+AGG - chr5_3:8323988-8324007 Msa0796250:intron 20.0%
!! AACACAATTAAATTTGCAAA+AGG - chr5_3:8324320-8324339 Msa0796250:intron 20.0%
!!! TCAGTTCAAAATTTTGATTT+TGG - chr5_3:8324359-8324378 Msa0796250:five_prime_UTR 20.0%
! TAAAAGTAAGTTACATCTTC+AGG - chr5_3:8316835-8316854 Msa0796250:intron 25.0%
! TTGCAATATATAGCAAACAT+AGG + chr5_3:8317010-8317029 None:intergenic 25.0%
!! TATGTCTTATTCTTTCTGTT+TGG - chr5_3:8317102-8317121 Msa0796250:intron 25.0%
! AGATACAAAACAATGTGAAA+GGG + chr5_3:8317419-8317438 None:intergenic 25.0%
! AAGATACAAAACAATGTGAA+AGG + chr5_3:8317420-8317439 None:intergenic 25.0%
! AAATATTGTATGACCCAAAA+GGG + chr5_3:8317668-8317687 None:intergenic 25.0%
! AAAATATTGTATGACCCAAA+AGG + chr5_3:8317669-8317688 None:intergenic 25.0%
! CTTTGTTGGAGAAATAAATT+CGG - chr5_3:8317700-8317719 Msa0796250:intron 25.0%
! ATTTGTTCAATAGTTGCAAA+GGG - chr5_3:8317968-8317987 Msa0796250:three_prime_UTR 25.0%
!! TTTGTCAGAAAAAGTTTTTC+TGG - chr5_3:8318520-8318539 Msa0796250:three_prime_UTR 25.0%
! ATTAGTATATATGCATGCTT+AGG - chr5_3:8318601-8318620 Msa0796250:three_prime_UTR 25.0%
!! TTCTTTAGTTGTAGTAGTTT+TGG + chr5_3:8318674-8318693 None:intergenic 25.0%
! GCAAAGTAATATACTTATTG+AGG - chr5_3:8318743-8318762 Msa0796250:three_prime_UTR 25.0%
! TTCAAGATAAAATACGAGTT+TGG + chr5_3:8318924-8318943 None:intergenic 25.0%
!! GTATTTTATCTTGAAGCTTT+TGG - chr5_3:8318929-8318948 Msa0796250:three_prime_UTR 25.0%
! ATAGAAATATGTAGCTTTCA+TGG + chr5_3:8319034-8319053 None:intergenic 25.0%
! AAACCAAGCTAGAAAAAAAT+AGG + chr5_3:8319300-8319319 None:intergenic 25.0%
! CTCAATTATAAACTTTCCAT+TGG + chr5_3:8319418-8319437 None:intergenic 25.0%
!! TATTAGCTTAGAGACAAAAA+TGG - chr5_3:8319508-8319527 Msa0796250:intron 25.0%
!! TGTAATTTGTGAAAACTTGA+AGG - chr5_3:8319623-8319642 Msa0796250:three_prime_UTR 25.0%
! AGACTAAAAGAAAATCAGAT+TGG - chr5_3:8319711-8319730 Msa0796250:three_prime_UTR 25.0%
! ATGTCATTATAGAGAATGTA+TGG - chr5_3:8319799-8319818 Msa0796250:three_prime_UTR 25.0%
! TATATGTAAAATCCCAACTT+AGG - chr5_3:8319842-8319861 Msa0796250:intron 25.0%
! CTTCATATATGATTTATGAC+AGG - chr5_3:8319958-8319977 Msa0796250:intron 25.0%
! TCATTTACTAGAAAAAGCTT+TGG - chr5_3:8320009-8320028 Msa0796250:three_prime_UTR 25.0%
! ATTCATTTGAAGATAAAACC+AGG + chr5_3:8320101-8320120 None:intergenic 25.0%
! TCATAAATGATCTATCTGTA+TGG - chr5_3:8320156-8320175 Msa0796250:intron 25.0%
! AATAACTCAAACTTATCTGA+TGG - chr5_3:8320263-8320282 Msa0796250:CDS 25.0%
! ATAACTCAAACTTATCTGAT+GGG - chr5_3:8320264-8320283 Msa0796250:CDS 25.0%
! TGTGCATATATAAGCTTATA+TGG + chr5_3:8320367-8320386 None:intergenic 25.0%
!! AATTTACCAACTAATTTTGC+AGG + chr5_3:8320706-8320725 None:intergenic 25.0%
!! AAATCTGGTTTATTTATCCT+AGG - chr5_3:8321074-8321093 Msa0796250:intron 25.0%
! TTTGAAGGTGAATAAAATTG+AGG - chr5_3:8321772-8321791 Msa0796250:intron 25.0%
! TTGAAGGTGAATAAAATTGA+GGG - chr5_3:8321773-8321792 Msa0796250:intron 25.0%
! AGATATGTCTAAATAACACA+TGG + chr5_3:8321933-8321952 None:intergenic 25.0%
!! TGTTATTTAGACATATCTCA+GGG - chr5_3:8321935-8321954 Msa0796250:intron 25.0%
! CCTCATAAAATATTAGAGAT+AGG + chr5_3:8321979-8321998 None:intergenic 25.0%
!! CCTATCTCTAATATTTTATG+AGG - chr5_3:8321976-8321995 Msa0796250:intron 25.0%
! AGAAATACCATAGATGAAAA+AGG - chr5_3:8322057-8322076 Msa0796250:intron 25.0%
!!! TATCTATCCTTTTTCATCTA+TGG + chr5_3:8322067-8322086 None:intergenic 25.0%
! AATAAAAAACTTTGCATTGG+CGG + chr5_3:8322315-8322334 None:intergenic 25.0%
! TGGAATAAAAAACTTTGCAT+TGG + chr5_3:8322318-8322337 None:intergenic 25.0%
!!! TAATTTCACCTATTTTTGGA+GGG + chr5_3:8322607-8322626 None:intergenic 25.0%
!!! TTAATTTCACCTATTTTTGG+AGG + chr5_3:8322608-8322627 None:intergenic 25.0%
!!! GTTTTGATCATCAGAATAAT+TGG - chr5_3:8322781-8322800 Msa0796250:intron 25.0%
!! AAAAATTCTGAGAAGAGAAT+GGG + chr5_3:8322904-8322923 None:intergenic 25.0%
!! TAAAAATTCTGAGAAGAGAA+TGG + chr5_3:8322905-8322924 None:intergenic 25.0%
!!! CTGTTTTGTTTAAAATGTGA+AGG - chr5_3:8322989-8323008 Msa0796250:intron 25.0%
! ATGATCTTATGATGTAATGA+TGG - chr5_3:8323274-8323293 Msa0796250:intron 25.0%
! TGATCTTATGATGTAATGAT+GGG - chr5_3:8323275-8323294 Msa0796250:intron 25.0%
!!! CAGTTAATTTTGATATGGTT+CGG + chr5_3:8323369-8323388 None:intergenic 25.0%
!!! TGGTTCAGTTAATTTTGATA+TGG + chr5_3:8323374-8323393 None:intergenic 25.0%
! AATAGATATGGTTAATGGTT+CGG + chr5_3:8323485-8323504 None:intergenic 25.0%
!!! TGAATTTCTTTTTCAATCAG+TGG + chr5_3:8323830-8323849 None:intergenic 25.0%
!!! CTTTGAGGTAATTTTATACT+TGG + chr5_3:8323859-8323878 None:intergenic 25.0%
!! GATTGATTGTCTTTTCAATT+TGG + chr5_3:8323927-8323946 None:intergenic 25.0%
! CTCTAAGTTCTATGAATATT+TGG - chr5_3:8324092-8324111 Msa0796250:intron 25.0%
! AATCTACAACAAGGTTAAAT+AGG - chr5_3:8324222-8324241 Msa0796250:intron 25.0%
! ATCTACAACAAGGTTAAATA+GGG - chr5_3:8324223-8324242 Msa0796250:intron 25.0%
! TGTATTCGAAACATTATGAT+TGG + chr5_3:8324273-8324292 None:intergenic 25.0%
!!! ATTTTGATTTTGGTTCAGTT+CGG - chr5_3:8324369-8324388 Msa0796250:five_prime_UTR 25.0%
! TCTTTAGCAATAAGAATTTG+TGG - chr5_3:8324639-8324658 Msa0796250:five_prime_UTR 25.0%
! TATTTCTGTGTTGAACTTGA+TGG - chr5_3:8316537-8316556 Msa0796250:three_prime_UTR 30.0%
AGCAACAATTCTTTGACTAT+TGG - chr5_3:8316574-8316593 Msa0796250:three_prime_UTR 30.0%
TGGATTATAAGAAAGGTGAA+AGG - chr5_3:8316731-8316750 Msa0796250:intron 30.0%
! AAAATAGCTTGTCAGCATTA+TGG - chr5_3:8316778-8316797 Msa0796250:intron 30.0%
CTAAGAATGTTGATCAAACT+AGG + chr5_3:8316928-8316947 None:intergenic 30.0%
CTAGTTTGATCAACATTCTT+AGG - chr5_3:8316926-8316945 Msa0796250:intron 30.0%
ACTTTCATAAATGCAAATCC+TGG - chr5_3:8316981-8317000 Msa0796250:intron 30.0%
!! ATAATCACTTCCTTTTGAAG+TGG - chr5_3:8317042-8317061 Msa0796250:intron 30.0%
TTTGGCTAAAACATCATGAT+TGG - chr5_3:8317120-8317139 Msa0796250:intron 30.0%
GCTTTACTAATCACATCTTT+AGG - chr5_3:8317142-8317161 Msa0796250:intron 30.0%
ATACAAAACAATGTGAAAGG+GGG + chr5_3:8317417-8317436 None:intergenic 30.0%
GATACAAAACAATGTGAAAG+GGG + chr5_3:8317418-8317437 None:intergenic 30.0%
TATCTCATATCTGATCTAGA+CGG - chr5_3:8317641-8317660 Msa0796250:intron 30.0%
! ATTTATTTCTCCAACAAAGG+AGG + chr5_3:8317699-8317718 None:intergenic 30.0%
! CGAATTTATTTCTCCAACAA+AGG + chr5_3:8317702-8317721 None:intergenic 30.0%
AGTTCTATGTTGATACAGTA+AGG - chr5_3:8317739-8317758 Msa0796250:intron 30.0%
!! ACATTATGCCTTTTAATTGC+TGG - chr5_3:8317804-8317823 Msa0796250:intron 30.0%
!! CATTATGCCTTTTAATTGCT+GGG - chr5_3:8317805-8317824 Msa0796250:intron 30.0%
TAATTGAGGTTTCTTCAGTA+GGG + chr5_3:8317848-8317867 None:intergenic 30.0%
ACTTCTTCCATTATCCTATT+GGG + chr5_3:8317920-8317939 None:intergenic 30.0%
TATTGAACAAATGTACGTAG+TGG + chr5_3:8317960-8317979 None:intergenic 30.0%
CATTTGTTCAATAGTTGCAA+AGG - chr5_3:8317967-8317986 Msa0796250:three_prime_UTR 30.0%
TAATGATATGCTTGAAGACT+GGG - chr5_3:8318054-8318073 Msa0796250:three_prime_UTR 30.0%
AACAGAACGGAAAAATATTG+TGG + chr5_3:8318428-8318447 None:intergenic 30.0%
GTCTCTCTTATCTAGTATTA+AGG + chr5_3:8318646-8318665 None:intergenic 30.0%
TACTACAACTAAAGAATCAG+AGG - chr5_3:8318678-8318697 Msa0796250:three_prime_UTR 30.0%
ACACAATTACACAGACTATA+TGG - chr5_3:8318896-8318915 Msa0796250:three_prime_UTR 30.0%
CACAATTACACAGACTATAT+GGG - chr5_3:8318897-8318916 Msa0796250:three_prime_UTR 30.0%
! TTTTATCTTGAAGCTTTTGG+AGG - chr5_3:8318932-8318951 Msa0796250:three_prime_UTR 30.0%
! TTTATCTTGAAGCTTTTGGA+GGG - chr5_3:8318933-8318952 Msa0796250:three_prime_UTR 30.0%
AGTATCAGGGGAATAAAAAA+AGG - chr5_3:8319077-8319096 Msa0796250:intron 30.0%
GGAAGGATTTAGAAGAAAAA+AGG - chr5_3:8319160-8319179 Msa0796250:intron 30.0%
CTACTAATCTTATGAACACA+AGG - chr5_3:8319232-8319251 Msa0796250:intron 30.0%
!!! GTACCTATTTTTTTCTAGCT+TGG - chr5_3:8319294-8319313 Msa0796250:intron 30.0%
TAATAGAGAGAAGAAACCAA+TGG - chr5_3:8319399-8319418 Msa0796250:intron 30.0%
! CTATATTTTATTGCTACAGG+CGG + chr5_3:8319454-8319473 None:intergenic 30.0%
! TGTTTAGAACCTTAGATTTG+TGG + chr5_3:8319548-8319567 None:intergenic 30.0%
!! ATCTAAGGTTCTAAACATCT+TGG - chr5_3:8319551-8319570 Msa0796250:intron 30.0%
!! TCTAAGGTTCTAAACATCTT+GGG - chr5_3:8319552-8319571 Msa0796250:intron 30.0%
!!! TGCGATATTTTAGAGTTCAA+TGG - chr5_3:8319930-8319949 Msa0796250:intron 30.0%
! TTTACTAGAAAAAGCTTTGG+TGG - chr5_3:8320012-8320031 Msa0796250:three_prime_UTR 30.0%
TATGAAGCTTACAAATCACT+AGG + chr5_3:8320141-8320160 None:intergenic 30.0%
TATGAATATTCAAAGCTGCT+TGG - chr5_3:8320310-8320329 Msa0796250:CDS 30.0%
!!! TCATTGTTGTTTTTGATCAC+AGG - chr5_3:8320475-8320494 Msa0796250:CDS 30.0%
TTAAGAATTAATGAAGGGCA+GGG + chr5_3:8320615-8320634 None:intergenic 30.0%
ATTAAGAATTAATGAAGGGC+AGG + chr5_3:8320616-8320635 None:intergenic 30.0%
ATCCTCTTGTATATTTGTTC+AGG - chr5_3:8320657-8320676 Msa0796250:CDS 30.0%
TCCTCTTGTATATTTGTTCA+GGG - chr5_3:8320658-8320677 Msa0796250:CDS 30.0%
AGAATAGGAACCATTTGAAT+AGG + chr5_3:8321305-8321324 None:intergenic 30.0%
!!! TGCAGATTTTAAGTTGTACT+CGG + chr5_3:8321480-8321499 None:intergenic 30.0%
AATCTAAAAGAGAAGCTAAC+AGG + chr5_3:8321746-8321765 None:intergenic 30.0%
TGAAGGTGAATAAAATTGAG+GGG - chr5_3:8321774-8321793 Msa0796250:intron 30.0%
GTCATTTAGACATATCTCAA+GGG + chr5_3:8321837-8321856 None:intergenic 30.0%
! TGTCATTTAGACATATCTCA+AGG + chr5_3:8321838-8321857 None:intergenic 30.0%
TCTATTTAATTAAGGGGAAG+TGG - chr5_3:8321883-8321902 Msa0796250:intron 30.0%
CTATTTAATTAAGGGGAAGT+GGG - chr5_3:8321884-8321903 Msa0796250:intron 30.0%
! TGGGTGTCTTTTACAAAAAA+AGG - chr5_3:8321903-8321922 Msa0796250:intron 30.0%
!! GTGTTATTTAGACATATCTC+AGG - chr5_3:8321934-8321953 Msa0796250:intron 30.0%
!! ATATAGAGTTTTGTCTGGTT+TGG - chr5_3:8322013-8322032 Msa0796250:intron 30.0%
AATTAAGAACCTATGAGTTC+TGG - chr5_3:8322086-8322105 Msa0796250:intron 30.0%
TATCATCCACAGAATTTGAA+AGG - chr5_3:8322167-8322186 Msa0796250:intron 30.0%
! TTTTTGCCTTTCAAATTCTG+TGG + chr5_3:8322176-8322195 None:intergenic 30.0%
! ATAAAAAACTTTGCATTGGC+GGG + chr5_3:8322314-8322333 None:intergenic 30.0%
! GGCTTAATTTCACCTATTTT+TGG + chr5_3:8322611-8322630 None:intergenic 30.0%
GATCTTATGATGTAATGATG+GGG - chr5_3:8323276-8323295 Msa0796250:intron 30.0%
!!! AATTTTGATATGGTTCGGTT+CGG + chr5_3:8323364-8323383 None:intergenic 30.0%
!!! TTTCTTTTTCAATCAGTGGT+TGG + chr5_3:8323826-8323845 None:intergenic 30.0%
AATATGCACTTGTATCTTTG+AGG + chr5_3:8323874-8323893 None:intergenic 30.0%
ATATTCATAGAACTTAGAGC+AGG + chr5_3:8324091-8324110 None:intergenic 30.0%
! TGATTGGATTCCTTTTCATT+TGG + chr5_3:8324257-8324276 None:intergenic 30.0%
TCGGTTAATAGGTAAGTAAA+CGG - chr5_3:8324393-8324412 Msa0796250:five_prime_UTR 30.0%
! GGTTAGTTCCAAAACTTAAA+CGG - chr5_3:8324445-8324464 Msa0796250:five_prime_UTR 30.0%
TTGACTATTGGAAATGCTAC+TGG - chr5_3:8316586-8316605 Msa0796250:three_prime_UTR 35.0%
TGTACAAATGGTTAGATGAG+AGG - chr5_3:8316683-8316702 Msa0796250:intron 35.0%
CCTTTCTTATAATCCATGTC+AGG + chr5_3:8316727-8316746 None:intergenic 35.0%
! CCTGACATGGATTATAAGAA+AGG - chr5_3:8316724-8316743 Msa0796250:intron 35.0%
!! AAGCTATTTTAAGCAAGGAG+AGG + chr5_3:8316768-8316787 None:intergenic 35.0%
!! CTGACAAGCTATTTTAAGCA+AGG + chr5_3:8316773-8316792 None:intergenic 35.0%
! GGAAAATTACGTTCTCCTTT+TGG - chr5_3:8316799-8316818 Msa0796250:intron 35.0%
! ATTACGTTCTCCTTTTGGTA+CGG - chr5_3:8316804-8316823 Msa0796250:intron 35.0%
TAGTATGTATCCGTACCAAA+AGG + chr5_3:8316817-8316836 None:intergenic 35.0%
TTGATCAAACTAGGAAAGTG+TGG + chr5_3:8316919-8316938 None:intergenic 35.0%
ACGTCAAAAACCACTTCAAA+AGG + chr5_3:8317055-8317074 None:intergenic 35.0%
TAATCACATCTTTAGGTAGC+CGG - chr5_3:8317149-8317168 Msa0796250:intron 35.0%
ATAATATGACCCAGAATTGC+CGG + chr5_3:8317171-8317190 None:intergenic 35.0%
TATTGCCTGAATACTACTCA+TGG - chr5_3:8317188-8317207 Msa0796250:intron 35.0%
ATTGCCTGAATACTACTCAT+GGG - chr5_3:8317189-8317208 Msa0796250:intron 35.0%
!!! TCACATTTGGTAACGTTTTG+TGG - chr5_3:8317219-8317238 Msa0796250:intron 35.0%
!!! TGTGGCTTTCATTTTGAAAC+AGG - chr5_3:8317237-8317256 Msa0796250:intron 35.0%
! AAATTTTGCAGGCAATGACT+TGG + chr5_3:8317346-8317365 None:intergenic 35.0%
! TCTTCAGAAGGAAATTTTGC+AGG + chr5_3:8317357-8317376 None:intergenic 35.0%
CACTTCATTTGTTCTTCAGA+AGG + chr5_3:8317369-8317388 None:intergenic 35.0%
ATATGAGATATGAGCATCAG+CGG + chr5_3:8317631-8317650 None:intergenic 35.0%
ATAGAACTGCATCGCAAATA+CGG + chr5_3:8317727-8317746 None:intergenic 35.0%
TGTTGATACAGTAAGGCAAA+TGG - chr5_3:8317746-8317765 Msa0796250:intron 35.0%
TCAGTAGGGAATACATCATT+TGG + chr5_3:8317834-8317853 None:intergenic 35.0%
CTAATTGAGGTTTCTTCAGT+AGG + chr5_3:8317849-8317868 None:intergenic 35.0%
ACTGAAGAAACCTCAATTAG+TGG - chr5_3:8317849-8317868 Msa0796250:intron 35.0%
CTGAAGAAACCTCAATTAGT+GGG - chr5_3:8317850-8317869 Msa0796250:intron 35.0%
AGGTAATCCCAATAGGATAA+TGG - chr5_3:8317910-8317929 Msa0796250:three_prime_UTR 35.0%
GACTTCTTCCATTATCCTAT+TGG + chr5_3:8317921-8317940 None:intergenic 35.0%
!!! GGTAGTGCTTTTTTTTGACT+TGG - chr5_3:8317989-8318008 Msa0796250:three_prime_UTR 35.0%
! GCAAGCAACAACATAAGTTT+TGG + chr5_3:8318018-8318037 None:intergenic 35.0%
! ATGTTGTTGCTTGCAATTTC+AGG - chr5_3:8318024-8318043 Msa0796250:three_prime_UTR 35.0%
CTAATGATATGCTTGAAGAC+TGG - chr5_3:8318053-8318072 Msa0796250:three_prime_UTR 35.0%
ATAACTGCAAACAGAACCAA+AGG - chr5_3:8318094-8318113 Msa0796250:three_prime_UTR 35.0%
TTTCCATTCTGCTTCTGATT+TGG - chr5_3:8318216-8318235 Msa0796250:three_prime_UTR 35.0%
TTCCATTCTGCTTCTGATTT+GGG - chr5_3:8318217-8318236 Msa0796250:three_prime_UTR 35.0%
AGTAAACTTCTCGTCATACT+CGG - chr5_3:8318288-8318307 Msa0796250:three_prime_UTR 35.0%
CAAATTACCTGAATAGCTTC+TGG + chr5_3:8318376-8318395 None:intergenic 35.0%
CAGAAGCTATTCAGGTAATT+TGG - chr5_3:8318374-8318393 Msa0796250:three_prime_UTR 35.0%
TCGAAGCAACTTAAGAACTA+AGG + chr5_3:8318405-8318424 None:intergenic 35.0%
CAGGATACTTGATACTTTCT+GGG + chr5_3:8318476-8318495 None:intergenic 35.0%
ACAGGATACTTGATACTTTC+TGG + chr5_3:8318477-8318496 None:intergenic 35.0%
!!! TGAGTTCTAGAGATTTTGCA+AGG - chr5_3:8318555-8318574 Msa0796250:three_prime_UTR 35.0%
! ATTTTGCAAGGTTCAACCAA+GGG - chr5_3:8318567-8318586 Msa0796250:three_prime_UTR 35.0%
CTAATATGAAACAACACCCT+TGG + chr5_3:8318586-8318605 None:intergenic 35.0%
CTCAGAGCATATTGAATGAA+TGG - chr5_3:8318829-8318848 Msa0796250:three_prime_UTR 35.0%
AGAGCATATTGAATGAATGG+AGG - chr5_3:8318832-8318851 Msa0796250:three_prime_UTR 35.0%
!! TTATCTTGAAGCTTTTGGAG+GGG - chr5_3:8318934-8318953 Msa0796250:three_prime_UTR 35.0%
AATTGAGTGGAGATATAGTC+AGG - chr5_3:8318959-8318978 Msa0796250:intron 35.0%
CTAATCTTATGAACACAAGG+TGG - chr5_3:8319235-8319254 Msa0796250:intron 35.0%
! TTTTGTGTGTGCAGATGATA+CGG - chr5_3:8319365-8319384 Msa0796250:intron 35.0%
GATACCATACCACAAATCTA+AGG - chr5_3:8319536-8319555 Msa0796250:intron 35.0%
AGAACCTTAGATTTGTGGTA+TGG + chr5_3:8319543-8319562 None:intergenic 35.0%
ATGTAAAATCCCAACTTAGG+TGG - chr5_3:8319845-8319864 Msa0796250:intron 35.0%
!! AACTCTAAAATATCGCACAC+TGG + chr5_3:8319927-8319946 None:intergenic 35.0%
! TACTTGTTAGATGGTCTACA+TGG - chr5_3:8320039-8320058 Msa0796250:three_prime_UTR 35.0%
TTTCTTAATATCTCCAGTCC+TGG - chr5_3:8320080-8320099 Msa0796250:intron 35.0%
TTTGAAGATAAAACCAGGAC+TGG + chr5_3:8320096-8320115 None:intergenic 35.0%
! TCAAACTGAGCATGTTCTTT+TGG + chr5_3:8320213-8320232 None:intergenic 35.0%
GTACTGAAATCCTTGAAAAC+TGG - chr5_3:8320510-8320529 Msa0796250:intron 35.0%
ACCCTGAACAAATATACAAG+AGG + chr5_3:8320662-8320681 None:intergenic 35.0%
TCTTGTATATTTGTTCAGGG+TGG - chr5_3:8320661-8320680 Msa0796250:CDS 35.0%
TTAGCTCCTGCAAAATTAGT+TGG - chr5_3:8320697-8320716 Msa0796250:intron 35.0%
TGAACAACATTACCAGCATA+TGG - chr5_3:8320816-8320835 Msa0796250:CDS 35.0%
GACAGCTGACAATAATAGAA+TGG - chr5_3:8320922-8320941 Msa0796250:intron 35.0%
TAGTCAATCAAAACACAGGA+AGG + chr5_3:8321030-8321049 None:intergenic 35.0%
ATGCTAGTCAATCAAAACAC+AGG + chr5_3:8321034-8321053 None:intergenic 35.0%
ACAACTTCTGCAAAAAACAG+TGG - chr5_3:8321175-8321194 Msa0796250:intron 35.0%
CAACTTCTGCAAAAAACAGT+GGG - chr5_3:8321176-8321195 Msa0796250:intron 35.0%
AACTTCTGCAAAAAACAGTG+GGG - chr5_3:8321177-8321196 Msa0796250:intron 35.0%
TCTGACTTTGCCTATTCAAA+TGG - chr5_3:8321292-8321311 Msa0796250:intron 35.0%
ATGACGAAAAGTTGAAGAGA+TGG - chr5_3:8321369-8321388 Msa0796250:intron 35.0%
TGACGAAAAGTTGAAGAGAT+GGG - chr5_3:8321370-8321389 Msa0796250:intron 35.0%
AAATCTGCATTGAAGACAGA+AGG - chr5_3:8321491-8321510 Msa0796250:intron 35.0%
TGAATAAAATTGAGGGGAAG+TGG - chr5_3:8321780-8321799 Msa0796250:intron 35.0%
GAATAAAATTGAGGGGAAGT+GGG - chr5_3:8321781-8321800 Msa0796250:intron 35.0%
! AGGGAGTTGTATGTCATTTA+AGG + chr5_3:8321818-8321837 None:intergenic 35.0%
ATATTCTGCTCACTTGATGA+TGG + chr5_3:8322350-8322369 None:intergenic 35.0%
ATCATCAAGTGAGCAGAATA+TGG - chr5_3:8322349-8322368 Msa0796250:intron 35.0%
CATTTGTGGAAGATGTAGAA+GGG + chr5_3:8322421-8322440 None:intergenic 35.0%
TCATTTGTGGAAGATGTAGA+AGG + chr5_3:8322422-8322441 None:intergenic 35.0%
CTACATCTTCCACAAATGAT+TGG - chr5_3:8322423-8322442 Msa0796250:intron 35.0%
ATCGTATGACCAATCATTTG+TGG + chr5_3:8322435-8322454 None:intergenic 35.0%
TCATTTAGCCCTCCAAAAAT+AGG - chr5_3:8322596-8322615 Msa0796250:intron 35.0%
ATAGGTGAAATTAAGCCTTC+AGG - chr5_3:8322614-8322633 Msa0796250:intron 35.0%
TAGGTGAAATTAAGCCTTCA+GGG - chr5_3:8322615-8322634 Msa0796250:intron 35.0%
TGCATTAAAGATGAAGGATC+AGG + chr5_3:8322674-8322693 None:intergenic 35.0%
TGATCCTTCATCTTTAATGC+AGG - chr5_3:8322673-8322692 Msa0796250:intron 35.0%
! TCTGCATTTCTCTAGAAGTA+CGG - chr5_3:8322816-8322835 Msa0796250:CDS 35.0%
TTAATCTTACATCTCCAGGT+CGG + chr5_3:8322941-8322960 None:intergenic 35.0%
ACAGTTAATCTTACATCTCC+AGG + chr5_3:8322945-8322964 None:intergenic 35.0%
TGGAGATGTAAGATTAACTG+TGG - chr5_3:8322944-8322963 Msa0796250:intron 35.0%
ATAATCCTGATATGGTAGCT+GGG + chr5_3:8323022-8323041 None:intergenic 35.0%
TGAACAAATGAGTCCTAAAC+AGG + chr5_3:8323078-8323097 None:intergenic 35.0%
CAAGGACAAAGTATAGTTCA+TGG - chr5_3:8323160-8323179 Msa0796250:intron 35.0%
CGGATAATTGTGGTTACTAA+CGG + chr5_3:8323455-8323474 None:intergenic 35.0%
!! GTTAATGGTTCGGTTTGATT+CGG + chr5_3:8323475-8323494 None:intergenic 35.0%
TCAATTTGGCATACTGATAC+CGG + chr5_3:8323913-8323932 None:intergenic 35.0%
! TTAGCATATAAGTGTTGTCG+AGG + chr5_3:8324126-8324145 None:intergenic 35.0%
TTGTTGTAGATTGCAGTACT+TGG + chr5_3:8324214-8324233 None:intergenic 35.0%
! AAGTACTGCAATCTACAACA+AGG - chr5_3:8324213-8324232 Msa0796250:intron 35.0%
ACTGAACCAAAGTTATGGTT+CGG + chr5_3:8324423-8324442 None:intergenic 35.0%
! ACCATAACTTTGGTTCAGTT+CGG - chr5_3:8324424-8324443 Msa0796250:five_prime_UTR 35.0%
GTTCCAAAACTTAAACGGTT+CGG - chr5_3:8324450-8324469 Msa0796250:five_prime_UTR 35.0%
!! AAAACTTAAACGGTTCGGTT+CGG - chr5_3:8324455-8324474 Msa0796250:five_prime_UTR 35.0%
!! ACCAAAGTGTTGAAATGGTT+CGG + chr5_3:8324486-8324505 None:intergenic 35.0%
ACCATTTCAACACTTTGGTT+CGG - chr5_3:8324487-8324506 Msa0796250:five_prime_UTR 35.0%
GCAATAATCCAAGTTACTGA+TGG - chr5_3:8324615-8324634 Msa0796250:five_prime_UTR 35.0%
CTAAAGAACCATCAGTAACT+TGG + chr5_3:8324626-8324645 None:intergenic 35.0%
GAACTTGATGGAAGCTGTAA+CGG - chr5_3:8316549-8316568 Msa0796250:three_prime_UTR 40.0%
AACTTGATGGAAGCTGTAAC+GGG - chr5_3:8316550-8316569 Msa0796250:three_prime_UTR 40.0%
GAAGTAAGGAGCTGTACAAA+TGG - chr5_3:8316671-8316690 Msa0796250:intron 40.0%
!! CTATTTTAAGCAAGGAGAGG+AGG + chr5_3:8316765-8316784 None:intergenic 40.0%
TATAGCAAACATAGGTCTCC+AGG + chr5_3:8317002-8317021 None:intergenic 40.0%
TGATCCCATGAGTAGTATTC+AGG + chr5_3:8317196-8317215 None:intergenic 40.0%
CATGGGATCACTTTCACATT+TGG - chr5_3:8317206-8317225 Msa0796250:intron 40.0%
! AAAGCTTTTTGCATCTGCCA+AGG - chr5_3:8317288-8317307 Msa0796250:intron 40.0%
TTTGCATCTGCCAAGGTTAA+TGG - chr5_3:8317295-8317314 Msa0796250:intron 40.0%
TTGCATCTGCCAAGGTTAAT+GGG - chr5_3:8317296-8317315 Msa0796250:intron 40.0%
GGACAGAGTTCACTCAATAT+GGG - chr5_3:8317317-8317336 Msa0796250:intron 40.0%
CTTCTTGTCTCTGCAAAAGA+TGG - chr5_3:8317500-8317519 Msa0796250:intron 40.0%
CTTGTTCTTGCTTCACAACT+CGG - chr5_3:8317567-8317586 Msa0796250:intron 40.0%
! AAAAGGCATAATGTGCGTAG+AGG + chr5_3:8317798-8317817 None:intergenic 40.0%
TCTGAACAGGTAATCCCAAT+AGG - chr5_3:8317903-8317922 Msa0796250:three_prime_UTR 40.0%
CATTACAAGTTCGTCACCTT+TGG + chr5_3:8318113-8318132 None:intergenic 40.0%
GAACTTGTAATGATGCACCT+TGG - chr5_3:8318121-8318140 Msa0796250:three_prime_UTR 40.0%
CTTGTGGAAGGAAAAAAGAG+AGG - chr5_3:8318150-8318169 Msa0796250:three_prime_UTR 40.0%
AGAGAAGGGTAGAAAAACAC+AGG + chr5_3:8318495-8318514 None:intergenic 40.0%
TCTGACAAAGCAAGAGAGAA+GGG + chr5_3:8318509-8318528 None:intergenic 40.0%
TTCTGACAAAGCAAGAGAGA+AGG + chr5_3:8318510-8318529 None:intergenic 40.0%
! GATTTTGCAAGGTTCAACCA+AGG - chr5_3:8318566-8318585 Msa0796250:three_prime_UTR 40.0%
!! TATCTTGAAGCTTTTGGAGG+GGG - chr5_3:8318935-8318954 Msa0796250:three_prime_UTR 40.0%
GAAGATTGACGCATAGTATC+AGG - chr5_3:8319054-8319073 Msa0796250:intron 40.0%
!! GCATAGTATCAGGAGTATCA+GGG - chr5_3:8319064-8319083 Msa0796250:intron 40.0%
!! CATAGTATCAGGAGTATCAG+GGG - chr5_3:8319065-8319084 Msa0796250:intron 40.0%
TTAACAAGAAAACTGTGGCC+AGG + chr5_3:8319103-8319122 None:intergenic 40.0%
ATTGTGAGGAGACAAGTGAT+AGG - chr5_3:8319126-8319145 Msa0796250:intron 40.0%
TTGTGAGGAGACAAGTGATA+GGG - chr5_3:8319127-8319146 Msa0796250:intron 40.0%
!! GCAGATGATACGGTTTTAGT+TGG - chr5_3:8319375-8319394 Msa0796250:intron 40.0%
! AACCTAGTCCTTTTGTAGGA+TGG + chr5_3:8319579-8319598 None:intergenic 40.0%
ATCCTACAAAAGGACTAGGT+TGG - chr5_3:8319578-8319597 Msa0796250:three_prime_UTR 40.0%
! ATCCAACCTAGTCCTTTTGT+AGG + chr5_3:8319583-8319602 None:intergenic 40.0%
! GACTAGGTTGGATGAAATGA+AGG - chr5_3:8319590-8319609 Msa0796250:three_prime_UTR 40.0%
ACCTGCATTGTTGTATTACG+CGG - chr5_3:8319671-8319690 Msa0796250:three_prime_UTR 40.0%
CATTGTTGTATTACGCGGAA+TGG - chr5_3:8319676-8319695 Msa0796250:three_prime_UTR 40.0%
AATCCCAACTTAGGTGGTTT+AGG - chr5_3:8319851-8319870 Msa0796250:intron 40.0%
ATGCCTAAACCACCTAAGTT+GGG + chr5_3:8319857-8319876 None:intergenic 40.0%
TTAGGTGGTTTAGGCATGAT+GGG - chr5_3:8319860-8319879 Msa0796250:intron 40.0%
! GGTGGTTGTTACTTGTTAGA+TGG - chr5_3:8320030-8320049 Msa0796250:three_prime_UTR 40.0%
TTGGAAAGCAATAGTTGCTG+AGG + chr5_3:8320194-8320213 None:intergenic 40.0%
! AAACTTATCTGATGGGTGCT+TGG - chr5_3:8320271-8320290 Msa0796250:CDS 40.0%
TCAAGGATTTCAGTACTGCT+TGG + chr5_3:8320506-8320525 None:intergenic 40.0%
TGTTTCCACGTTTCTACTTC+CGG + chr5_3:8320543-8320562 None:intergenic 40.0%
!! TTTTTGATAGCACTGCCCAT+CGG - chr5_3:8320734-8320753 Msa0796250:intron 40.0%
! ACAGTTCCTTGTGATGATGT+TGG + chr5_3:8320787-8320806 None:intergenic 40.0%
TCATCACAAGGAACTGTTCA+TGG - chr5_3:8320790-8320809 Msa0796250:CDS 40.0%
ATGACATGACCATTGTTGAC+TGG + chr5_3:8320861-8320880 None:intergenic 40.0%
!! GGCTCTGAAACACTTCTATT+AGG + chr5_3:8320956-8320975 None:intergenic 40.0%
AGTGTTTCAGAGCCAGATAT+TGG - chr5_3:8320962-8320981 Msa0796250:intron 40.0%
!!! CGCTTTTCTCGATTTGGTTT+TGG - chr5_3:8321150-8321169 Msa0796250:intron 40.0%
AGTCTTGAGATCTGGAAAAC+AGG - chr5_3:8321202-8321221 Msa0796250:intron 40.0%
CTCTATCCCAAGGCTAAATT+GGG - chr5_3:8321326-8321345 Msa0796250:intron 40.0%
! TTCTCTCCCAATTTAGCCTT+GGG + chr5_3:8321335-8321354 None:intergenic 40.0%
TTTCTCTCCCAATTTAGCCT+TGG + chr5_3:8321336-8321355 None:intergenic 40.0%
AAAGTTGAAGAGATGGGTAG+AGG - chr5_3:8321376-8321395 Msa0796250:intron 40.0%
TGATTTGAGCTAGGTGGTAT+CGG + chr5_3:8321581-8321600 None:intergenic 40.0%
!! GAGAATTGATTTGAGCTAGG+TGG + chr5_3:8321587-8321606 None:intergenic 40.0%
!! GCAGAGAATTGATTTGAGCT+AGG + chr5_3:8321590-8321609 None:intergenic 40.0%
CTAAAAGAGAAGCTAACAGG+AGG + chr5_3:8321743-8321762 None:intergenic 40.0%
GTTGACACCTTCAACCAAAA+TGG - chr5_3:8322230-8322249 Msa0796250:intron 40.0%
TTTCACAGATTGAACGGAAG+GGG + chr5_3:8322282-8322301 None:intergenic 40.0%
GTTTCACAGATTGAACGGAA+GGG + chr5_3:8322283-8322302 None:intergenic 40.0%
AGCAGGTTTCACAGATTGAA+CGG + chr5_3:8322288-8322307 None:intergenic 40.0%
ATCAAGTGAGCAGAATATGG+AGG - chr5_3:8322352-8322371 Msa0796250:intron 40.0%
CATTAGCTGCACTATCTTCT+AGG + chr5_3:8322394-8322413 None:intergenic 40.0%
!! ATTGTTTGTGCGTGTTTTGG+AGG + chr5_3:8322458-8322477 None:intergenic 40.0%
! GTCATTGTTTGTGCGTGTTT+TGG + chr5_3:8322461-8322480 None:intergenic 40.0%
CACAAACAATGACCATGCAA+AGG - chr5_3:8322468-8322487 Msa0796250:intron 40.0%
AGGTGAAATTAAGCCTTCAG+GGG - chr5_3:8322616-8322635 Msa0796250:intron 40.0%
TTTCGGTGAAGATCTTCAAG+AGG - chr5_3:8322715-8322734 Msa0796250:intron 40.0%
TCTAGAGAAATGCAGAAGCA+GGG + chr5_3:8322812-8322831 None:intergenic 40.0%
! TTCTAGAGAAATGCAGAAGC+AGG + chr5_3:8322813-8322832 None:intergenic 40.0%
! TCTCTAGAAGTACGGAATAG+TGG - chr5_3:8322824-8322843 Msa0796250:CDS 40.0%
! GAATAGTGGAACACATCAGA+TGG - chr5_3:8322838-8322857 Msa0796250:CDS 40.0%
! TTCTGAGAAGAGAATGGGAA+CGG + chr5_3:8322899-8322918 None:intergenic 40.0%
TAATCTTACATCTCCAGGTC+GGG + chr5_3:8322940-8322959 None:intergenic 40.0%
TAATCCTGATATGGTAGCTG+GGG + chr5_3:8323021-8323040 None:intergenic 40.0%
CATAATCCTGATATGGTAGC+TGG + chr5_3:8323023-8323042 None:intergenic 40.0%
CAGCTACCATATCAGGATTA+TGG - chr5_3:8323021-8323040 Msa0796250:CDS 40.0%
CCAGTTCCATAATCCTGATA+TGG + chr5_3:8323030-8323049 None:intergenic 40.0%
CCATATCAGGATTATGGAAC+TGG - chr5_3:8323027-8323046 Msa0796250:CDS 40.0%
GTGTCTGATAGCAAGAAATG+TGG - chr5_3:8323049-8323068 Msa0796250:CDS 40.0%
ACAAATGAGTCCTAAACAGG+AGG + chr5_3:8323075-8323094 None:intergenic 40.0%
CTTTGTCCTTGATCTGTTTG+AGG + chr5_3:8323151-8323170 None:intergenic 40.0%
! TATGATGTAATGATGGGGCA+AGG - chr5_3:8323281-8323300 Msa0796250:CDS 40.0%
! ATGATGTAATGATGGGGCAA+GGG - chr5_3:8323282-8323301 Msa0796250:CDS 40.0%
AACCAAAACCCAATTCGAAC+CGG - chr5_3:8323334-8323353 Msa0796250:CDS 40.0%
CGGTTCGAGAATTGGTTAAA+TGG + chr5_3:8323394-8323413 None:intergenic 40.0%
!! TAATGGTTCGGTTCGAGAAT+TGG + chr5_3:8323402-8323421 None:intergenic 40.0%
TGGTTACTAACGGTTCAGTT+CGG + chr5_3:8323445-8323464 None:intergenic 40.0%
!! CGGTTTGATTCGGATAATTG+TGG + chr5_3:8323465-8323484 None:intergenic 40.0%
GATACAAGTGCATATTCCCA+TGG - chr5_3:8323878-8323897 Msa0796250:five_prime_UTR 40.0%
TGTAGATTGCAGTACTTGGT+TGG + chr5_3:8324210-8324229 None:intergenic 40.0%
CAAGGTTAAATAGGGTCTGA+TGG - chr5_3:8324231-8324250 Msa0796250:intron 40.0%
!!! GATTTTGGTTCAGTTCGGTT+CGG - chr5_3:8324374-8324393 Msa0796250:five_prime_UTR 40.0%
!! TTCAGTTCGGTTCGGTTAAT+AGG - chr5_3:8324382-8324401 Msa0796250:five_prime_UTR 40.0%
GGTTAACCGAACCATAACTT+TGG - chr5_3:8324414-8324433 Msa0796250:five_prime_UTR 40.0%
ACCGAACTGAACCAAAGTTA+TGG + chr5_3:8324428-8324447 None:intergenic 40.0%
!! GAACCGAACCGTTTAAGTTT+TGG + chr5_3:8324456-8324475 None:intergenic 40.0%
TCCGAACCATTTCAACACTT+TGG - chr5_3:8324482-8324501 Msa0796250:five_prime_UTR 40.0%
!! ACCGAACCAAAGTGTTGAAA+TGG + chr5_3:8324491-8324510 None:intergenic 40.0%
!! TTCAACACTTTGGTTCGGTT+CGG - chr5_3:8324492-8324511 Msa0796250:five_prime_UTR 40.0%
TCTTTCCCAGGTCCATTAGT+TGG - chr5_3:8316637-8316656 Msa0796250:intron 45.0%
! TACCACCAACTAATGGACCT+GGG + chr5_3:8316645-8316664 None:intergenic 45.0%
CCAACACTACCACCAACTAA+TGG + chr5_3:8316652-8316671 None:intergenic 45.0%
!! CCATTAGTTGGTGGTAGTGT+TGG - chr5_3:8316649-8316668 Msa0796250:intron 45.0%
! TGGTGGTAGTGTTGGAAGTA+AGG - chr5_3:8316657-8316676 Msa0796250:intron 45.0%
TTTAGGTAGCCGGCAATTCT+GGG - chr5_3:8317159-8317178 Msa0796250:intron 45.0%
GAACTCTGTCCCATTAACCT+TGG + chr5_3:8317308-8317327 None:intergenic 45.0%
GGGACAGAGTTCACTCAATA+TGG - chr5_3:8317316-8317335 Msa0796250:intron 45.0%
CTTGTCTCTGCAAAAGATGG+AGG - chr5_3:8317503-8317522 Msa0796250:intron 45.0%
CTTTACAGCGTGCACAAGAA+GGG - chr5_3:8317526-8317545 Msa0796250:intron 45.0%
TGCACAAGAAGGGCAATTGT+GGG - chr5_3:8317536-8317555 Msa0796250:intron 45.0%
TGTGAAGCAAGAACAAGTGC+AGG + chr5_3:8317564-8317583 None:intergenic 45.0%
! TGATCTAGACGGTCCCTTTT+GGG - chr5_3:8317652-8317671 Msa0796250:intron 45.0%
! TTTTCTCGTGCCTCCTTTGT+TGG - chr5_3:8317686-8317705 Msa0796250:intron 45.0%
TTGGTCGCCCAGCAATTAAA+AGG + chr5_3:8317815-8317834 None:intergenic 45.0%
ATTACCTGTTCAGACTGCTG+AGG + chr5_3:8317897-8317916 None:intergenic 45.0%
! TGTTGCTTGCAATTTCAGGC+TGG - chr5_3:8318028-8318047 Msa0796250:three_prime_UTR 45.0%
TGATATGCTTGAAGACTGGG+AGG - chr5_3:8318057-8318076 Msa0796250:three_prime_UTR 45.0%
TGAAGACTGGGAGGAAAATC+TGG - chr5_3:8318066-8318085 Msa0796250:three_prime_UTR 45.0%
CTCCCAAATCAGAAGCAGAA+TGG + chr5_3:8318222-8318241 None:intergenic 45.0%
GCTGCAAGACTTTGCCTAAT+AGG - chr5_3:8318313-8318332 Msa0796250:three_prime_UTR 45.0%
TCCAGTGATCTGCTCCTATT+AGG + chr5_3:8318330-8318349 None:intergenic 45.0%
!! TCTGGACTAGCATAAGTTCG+AGG + chr5_3:8318358-8318377 None:intergenic 45.0%
TGCTAGTCCAGAAGCTATTC+AGG - chr5_3:8318366-8318385 Msa0796250:three_prime_UTR 45.0%
AACACGTGCATGCAACAGAA+CGG + chr5_3:8318441-8318460 None:intergenic 45.0%
!! TTTTGGAGGGGGTAATTGAG+TGG - chr5_3:8318946-8318965 Msa0796250:intron 45.0%
!! CGCATAGTATCAGGAGTATC+AGG - chr5_3:8319063-8319082 Msa0796250:intron 45.0%
CAGGGGAATAAAAAAAGGCC+TGG - chr5_3:8319082-8319101 Msa0796250:intron 45.0%
TGTGAGGAGACAAGTGATAG+GGG - chr5_3:8319128-8319147 Msa0796250:intron 45.0%
AAGATGACCCTTTAGCTGCA+GGG + chr5_3:8319273-8319292 None:intergenic 45.0%
AAAGATGACCCTTTAGCTGC+AGG + chr5_3:8319274-8319293 None:intergenic 45.0%
TCTTGGGTCCATCCTACAAA+AGG - chr5_3:8319568-8319587 Msa0796250:three_prime_UTR 45.0%
GTCCATCCTACAAAAGGACT+AGG - chr5_3:8319574-8319593 Msa0796250:three_prime_UTR 45.0%
TCCGCGTAATACAACAATGC+AGG + chr5_3:8319675-8319694 None:intergenic 45.0%
CATGCCTAAACCACCTAAGT+TGG + chr5_3:8319858-8319877 None:intergenic 45.0%
CTTAGGTGGTTTAGGCATGA+TGG - chr5_3:8319859-8319878 Msa0796250:intron 45.0%
GAAAGCAATAGTTGCTGAGG+TGG + chr5_3:8320191-8320210 None:intergenic 45.0%
TGCACATATGCTAGCTGAAG+TGG - chr5_3:8320381-8320400 Msa0796250:CDS 45.0%
GCACATATGCTAGCTGAAGT+GGG - chr5_3:8320382-8320401 Msa0796250:CDS 45.0%
TATGCTAGCTGAAGTGGGAA+AGG - chr5_3:8320387-8320406 Msa0796250:CDS 45.0%
AGCTGAAGTGGGAAAGGTTT+CGG - chr5_3:8320393-8320412 Msa0796250:CDS 45.0%
AGTAGAAACGTGGAAACAGC+TGG - chr5_3:8320545-8320564 Msa0796250:intron 45.0%
!! TTTTGATAGCACTGCCCATC+GGG - chr5_3:8320735-8320754 Msa0796250:intron 45.0%
TAAACCACCAACAACCCGAT+GGG + chr5_3:8320752-8320771 None:intergenic 45.0%
!! ATACTCTTGGTGCCATATGC+TGG + chr5_3:8320831-8320850 None:intergenic 45.0%
ATCCACTAGCCAGTCAACAA+TGG - chr5_3:8320849-8320868 Msa0796250:CDS 45.0%
! TTTAGTTCCGTCTGCTTCTC+TGG - chr5_3:8320882-8320901 Msa0796250:intron 45.0%
! TCTGGAACCCATAAGTGAGT+GGG - chr5_3:8320900-8320919 Msa0796250:intron 45.0%
CTTGGGCTTCTACCAATATC+TGG + chr5_3:8320977-8320996 None:intergenic 45.0%
TATTGGTAGAAGCCCAAGAC+AGG - chr5_3:8320979-8320998 Msa0796250:intron 45.0%
AGTAGTCACACACCTGTCTT+GGG + chr5_3:8320994-8321013 None:intergenic 45.0%
! TGGACTTTTCCTTGTGCATC+AGG + chr5_3:8321111-8321130 None:intergenic 45.0%
TGATGCACAAGGAAAAGTCC+AGG - chr5_3:8321110-8321129 Msa0796250:intron 45.0%
CAAGGAAAAGTCCAGGTATC+AGG - chr5_3:8321117-8321136 Msa0796250:intron 45.0%
! GCATCACGCTTTTCTCGATT+TGG - chr5_3:8321144-8321163 Msa0796250:intron 45.0%
TCCTATTCTGCTCTATCCCA+AGG - chr5_3:8321316-8321335 Msa0796250:intron 45.0%
GCTCTATCCCAAGGCTAAAT+TGG - chr5_3:8321325-8321344 Msa0796250:intron 45.0%
TTGAAGAGATGGGTAGAGGA+AGG - chr5_3:8321380-8321399 Msa0796250:intron 45.0%
! TTCTGGAAAGCAGCAGTTGT+CGG + chr5_3:8321449-8321468 None:intergenic 45.0%
!! ACAACTGCTGCTTTCCAGAA+TGG - chr5_3:8321449-8321468 Msa0796250:intron 45.0%
CTTGTGCTCGAGAACTCATT+TGG + chr5_3:8321524-8321543 None:intergenic 45.0%
TCAAGTCCTGAACTTAGTCC+AGG - chr5_3:8321548-8321567 Msa0796250:intron 45.0%
CAAGTCCTGAACTTAGTCCA+GGG - chr5_3:8321549-8321568 Msa0796250:intron 45.0%
GCAGAATAGCCAGAACTCAT+AGG + chr5_3:8322098-8322117 None:intergenic 45.0%
GACACCTTCAACCAAAATGG+TGG - chr5_3:8322233-8322252 Msa0796250:intron 45.0%
!!! GCTTCCACCATTTTGGTTGA+AGG + chr5_3:8322240-8322259 None:intergenic 45.0%
! TTGCAGAGCTTCCACCATTT+TGG + chr5_3:8322247-8322266 None:intergenic 45.0%
GGTTTCACAGATTGAACGGA+AGG + chr5_3:8322284-8322303 None:intergenic 45.0%
!! TGCTCACTTGATGATGGTAC+AGG + chr5_3:8322344-8322363 None:intergenic 45.0%
CATGCAAAGGTTTCCAAGTG+CGG - chr5_3:8322481-8322500 Msa0796250:intron 45.0%
ATGCAAAGGTTTCCAAGTGC+GGG - chr5_3:8322482-8322501 Msa0796250:intron 45.0%
! TTTGAGATGTTACCCGCACT+TGG + chr5_3:8322497-8322516 None:intergenic 45.0%
TGCGGGTAACATCTCAAAAC+AGG - chr5_3:8322499-8322518 Msa0796250:intron 45.0%
GCGGGTAACATCTCAAAACA+GGG - chr5_3:8322500-8322519 Msa0796250:intron 45.0%
CGGGTAACATCTCAAAACAG+GGG - chr5_3:8322501-8322520 Msa0796250:intron 45.0%
TGAAGCTGTTCGACGAGAAT+GGG + chr5_3:8322555-8322574 None:intergenic 45.0%
ATGAAGCTGTTCGACGAGAA+TGG + chr5_3:8322556-8322575 None:intergenic 45.0%
ATTCTCGTCGAACAGCTTCA+TGG - chr5_3:8322555-8322574 Msa0796250:intron 45.0%
! TCAGGCATAAACGTTGATGG+TGG + chr5_3:8322656-8322675 None:intergenic 45.0%
GGATCAGGCATAAACGTTGA+TGG + chr5_3:8322659-8322678 None:intergenic 45.0%
CCTACGAGAAGTGGTAGTTT+CGG - chr5_3:8322698-8322717 Msa0796250:intron 45.0%
TCTGAGAAGAGAATGGGAAC+GGG + chr5_3:8322898-8322917 None:intergenic 45.0%
! TGGTCTGCTCACTTGATAGT+GGG - chr5_3:8322964-8322983 Msa0796250:intron 45.0%
AGAAATGTGGCCTCCTGTTT+AGG - chr5_3:8323062-8323081 Msa0796250:CDS 45.0%
AAGAAACAAAATGCCCTGCC+AGG - chr5_3:8323114-8323133 Msa0796250:CDS 45.0%
AGAAACAAAATGCCCTGCCA+GGG - chr5_3:8323115-8323134 Msa0796250:CDS 45.0%
AGATGGCCTCAAACAGATCA+AGG - chr5_3:8323142-8323161 Msa0796250:intron 45.0%
! CAAGGGAAGGTATGCAAGTA+GGG - chr5_3:8323299-8323318 Msa0796250:CDS 45.0%
! AAGGGAAGGTATGCAAGTAG+GGG - chr5_3:8323300-8323319 Msa0796250:CDS 45.0%
!!! AACCGGTTCGAATTGGGTTT+TGG + chr5_3:8323339-8323358 None:intergenic 45.0%
!! TCGGTTAACCGGTTCGAATT+GGG + chr5_3:8323345-8323364 None:intergenic 45.0%
!! TTCGGTTAACCGGTTCGAAT+TGG + chr5_3:8323346-8323365 None:intergenic 45.0%
!! TATGGTTCGGTTCGGTTAAC+CGG + chr5_3:8323356-8323375 None:intergenic 45.0%
AAGTGCATATTCCCATGGCA+GGG - chr5_3:8323883-8323902 Msa0796250:five_prime_UTR 45.0%
GGTCTGATGGCCAAATGAAA+AGG - chr5_3:8324244-8324263 Msa0796250:intron 45.0%
!! TCGGTTCGGTTCGGTTAATA+TGG - chr5_3:8324506-8324525 Msa0796250:five_prime_UTR 45.0%
AGCAAATGCCTTGCATCTAG+GGG + chr5_3:8324547-8324566 None:intergenic 45.0%
GAGCAAATGCCTTGCATCTA+GGG + chr5_3:8324548-8324567 None:intergenic 45.0%
!! ATAAAAATAAAATTGATTAT+GGG + chr5_3:8318997-8319016 None:intergenic 5.0%
CTAAGCCAGCAATCTTTCCC+AGG - chr5_3:8316625-8316644 Msa0796250:intron 50.0%
ATGGACCTGGGAAAGATTGC+TGG + chr5_3:8316633-8316652 None:intergenic 50.0%
TTCCCAGGTCCATTAGTTGG+TGG - chr5_3:8316640-8316659 Msa0796250:intron 50.0%
! CTACCACCAACTAATGGACC+TGG + chr5_3:8316646-8316665 None:intergenic 50.0%
ACGCTACGAATCACCTGACA+TGG - chr5_3:8316711-8316730 Msa0796250:intron 50.0%
CTTTAGGTAGCCGGCAATTC+TGG - chr5_3:8317158-8317177 Msa0796250:intron 50.0%
!! AGCTTTGCAACTGCTGACTC+AGG + chr5_3:8317274-8317293 None:intergenic 50.0%
GCTTTACAGCGTGCACAAGA+AGG - chr5_3:8317525-8317544 Msa0796250:intron 50.0%
GTGCACAAGAAGGGCAATTG+TGG - chr5_3:8317535-8317554 Msa0796250:intron 50.0%
GCACAAGAAGGGCAATTGTG+GGG - chr5_3:8317537-8317556 Msa0796250:intron 50.0%
! CTGATCTAGACGGTCCCTTT+TGG - chr5_3:8317651-8317670 Msa0796250:intron 50.0%
GCAAATGGCACTTCGTCAGT+TGG - chr5_3:8317761-8317780 Msa0796250:intron 50.0%
CACTTCGTCAGTTGGTTGCA+GGG - chr5_3:8317769-8317788 Msa0796250:intron 50.0%
! ACCTCAATTAGTGGGCATCC+TGG - chr5_3:8317858-8317877 Msa0796250:intron 50.0%
ACCAGGATGCCCACTAATTG+AGG + chr5_3:8317862-8317881 None:intergenic 50.0%
!! TGAGGCATACCAAAAGCACC+AGG + chr5_3:8317879-8317898 None:intergenic 50.0%
TATGCCTCAGCAGTCTGAAC+AGG - chr5_3:8317890-8317909 Msa0796250:three_prime_UTR 50.0%
! TGCACCTTGGTGATTGCTTG+TGG - chr5_3:8318134-8318153 Msa0796250:three_prime_UTR 50.0%
CCTTCCACAAGCAATCACCA+AGG + chr5_3:8318141-8318160 None:intergenic 50.0%
! CCTTGGTGATTGCTTGTGGA+AGG - chr5_3:8318138-8318157 Msa0796250:three_prime_UTR 50.0%
GCCTAATAGGAGCAGATCAC+TGG - chr5_3:8318326-8318345 Msa0796250:three_prime_UTR 50.0%
!! AAGTGATAGGGGAGGTGTCA+TGG - chr5_3:8319139-8319158 Msa0796250:intron 50.0%
ACAGACTTCCCTGCAGCTAA+AGG - chr5_3:8319262-8319281 Msa0796250:intron 50.0%
CAGACTTCCCTGCAGCTAAA+GGG - chr5_3:8319263-8319282 Msa0796250:intron 50.0%
! GTTTAGGCATGATGGGAGAG+AGG - chr5_3:8319867-8319886 Msa0796250:intron 50.0%
ACGTTTCTACTTCCGGAGCA+CGG + chr5_3:8320536-8320555 None:intergenic 50.0%
! ACAGCTGGTATTAGCTCTCG+AGG - chr5_3:8320560-8320579 Msa0796250:intron 50.0%
TAGCTCTCGAGGAGAGACTT+AGG - chr5_3:8320571-8320590 Msa0796250:intron 50.0%
GTAAACCACCAACAACCCGA+TGG + chr5_3:8320753-8320772 None:intergenic 50.0%
! TGTGATGATGTTGGAGCAGG+TGG + chr5_3:8320778-8320797 None:intergenic 50.0%
! CCTTGTGATGATGTTGGAGC+AGG + chr5_3:8320781-8320800 None:intergenic 50.0%
CCTGCTCCAACATCATCACA+AGG - chr5_3:8320778-8320797 Msa0796250:CDS 50.0%
! GACTGGCTAGTGGATACTCT+TGG + chr5_3:8320844-8320863 None:intergenic 50.0%
! GACCATTGTTGACTGGCTAG+TGG + chr5_3:8320854-8320873 None:intergenic 50.0%
ATGGGTTCCAGAGAAGCAGA+CGG + chr5_3:8320892-8320911 None:intergenic 50.0%
!! CTCTGGAACCCATAAGTGAG+TGG - chr5_3:8320899-8320918 Msa0796250:intron 50.0%
CAGCTGTCCCACTCACTTAT+GGG + chr5_3:8320910-8320929 None:intergenic 50.0%
TCAGCTGTCCCACTCACTTA+TGG + chr5_3:8320911-8320930 None:intergenic 50.0%
CAGTAGTCACACACCTGTCT+TGG + chr5_3:8320995-8321014 None:intergenic 50.0%
TTTCCTTGTGCATCAGGCGA+TGG + chr5_3:8321105-8321124 None:intergenic 50.0%
GGAAAAGTCCAGGTATCAGG+AGG - chr5_3:8321120-8321139 Msa0796250:intron 50.0%
GCCTTGGGATAGAGCAGAAT+AGG + chr5_3:8321320-8321339 None:intergenic 50.0%
TGTACTCGGCTGAACCATTC+TGG + chr5_3:8321466-8321485 None:intergenic 50.0%
! TTTGAGCTAGGTGGTATCGG+TGG + chr5_3:8321578-8321597 None:intergenic 50.0%
TTCTCTGCTCGCAGTCGTTT+AGG - chr5_3:8321602-8321621 Msa0796250:intron 50.0%
CTCGCAGTCGTTTAGGTGTT+CGG - chr5_3:8321609-8321628 Msa0796250:intron 50.0%
GTCGTTTAGGTGTTCGGTCA+AGG - chr5_3:8321615-8321634 Msa0796250:intron 50.0%
!! CTTGATGATGGTACAGGAGC+TGG + chr5_3:8322338-8322357 None:intergenic 50.0%
CGCACTTGGAAACCTTTGCA+TGG + chr5_3:8322483-8322502 None:intergenic 50.0%
TCAAAACAGGGGCAGACAGA+TGG - chr5_3:8322512-8322531 Msa0796250:intron 50.0%
GGCGCCTGCATTAAAGATGA+AGG + chr5_3:8322680-8322699 None:intergenic 50.0%
CCGAAACTACCACTTCTCGT+AGG + chr5_3:8322701-8322720 None:intergenic 50.0%
AAGAGAATGGGAACGGGGAA+TGG + chr5_3:8322892-8322911 None:intergenic 50.0%
CTGAGAAGAGAATGGGAACG+GGG + chr5_3:8322897-8322916 None:intergenic 50.0%
GTGGTCTGCTCACTTGATAG+TGG - chr5_3:8322963-8322982 Msa0796250:intron 50.0%
TTGACCCCAGCTACCATATC+AGG - chr5_3:8323014-8323033 Msa0796250:intron 50.0%
! TTTGAGGCCATCTTTCTCCC+TGG + chr5_3:8323135-8323154 None:intergenic 50.0%
! TGTAATGATGGGGCAAGGGA+AGG - chr5_3:8323286-8323305 Msa0796250:CDS 50.0%
! GCAAGGGAAGGTATGCAAGT+AGG - chr5_3:8323298-8323317 Msa0796250:CDS 50.0%
! GAAGGTATGCAAGTAGGGGT+GGG - chr5_3:8323304-8323323 Msa0796250:CDS 50.0%
CAAGTGCATATTCCCATGGC+AGG - chr5_3:8323882-8323901 Msa0796250:five_prime_UTR 50.0%
!! CACTTTGGTTCGGTTCGGTT+CGG - chr5_3:8324497-8324516 Msa0796250:five_prime_UTR 50.0%
CAAATGCCTTGCATCTAGGG+GGG + chr5_3:8324545-8324564 None:intergenic 50.0%
GCAAATGCCTTGCATCTAGG+GGG + chr5_3:8324546-8324565 None:intergenic 50.0%
CGAGCAAATGCCTTGCATCT+AGG + chr5_3:8324549-8324568 None:intergenic 50.0%
TGTGAAAGGGGGATCGTGTC+AGG + chr5_3:8317406-8317425 None:intergenic 55.0%
! TGCTTCACAACTCGGTGAGC+AGG - chr5_3:8317575-8317594 Msa0796250:intron 55.0%
GCACTTCGTCAGTTGGTTGC+AGG - chr5_3:8317768-8317787 Msa0796250:intron 55.0%
! AGTGGGCATCCTGGTGCTTT+TGG - chr5_3:8317867-8317886 Msa0796250:intron 55.0%
GAGGAGACAAGTGATAGGGG+AGG - chr5_3:8319131-8319150 Msa0796250:intron 55.0%
!! GATAGGGGAGGTGTCATGGA+AGG - chr5_3:8319143-8319162 Msa0796250:intron 55.0%
CCACGATAGCAGTCGCATCT+TGG + chr5_3:8319742-8319761 None:intergenic 55.0%
CCAAGATGCGACTGCTATCG+TGG - chr5_3:8319739-8319758 Msa0796250:three_prime_UTR 55.0%
! TCTGATGGGTGCTTGGACAG+AGG - chr5_3:8320278-8320297 Msa0796250:CDS 55.0%
CTTGAAAACTGGCCGTGCTC+CGG - chr5_3:8320521-8320540 Msa0796250:intron 55.0%
GTGCTCCGGAAGTAGAAACG+TGG - chr5_3:8320535-8320554 Msa0796250:intron 55.0%
GAGACTTAGGACCCACCAAC+AGG - chr5_3:8320584-8320603 Msa0796250:CDS 55.0%
!! GCAGGGAAGTACCTGTTGGT+GGG + chr5_3:8320598-8320617 None:intergenic 55.0%
!! AAGGGCAGGGAAGTACCTGT+TGG + chr5_3:8320602-8320621 None:intergenic 55.0%
GATGATGTTGGAGCAGGTGG+TGG + chr5_3:8320775-8320794 None:intergenic 55.0%
ATCAGGCGATGGCGATTCCT+AGG + chr5_3:8321094-8321113 None:intergenic 55.0%
GTGATGCACCTCCTGATACC+TGG + chr5_3:8321131-8321150 None:intergenic 55.0%
!! GTGGGGCTAGTCTTGAGATC+TGG - chr5_3:8321194-8321213 Msa0796250:intron 55.0%
AAAGCAGCAGTTGTCGGAGG+TGG + chr5_3:8321443-8321462 None:intergenic 55.0%
TGGAAAGCAGCAGTTGTCGG+AGG + chr5_3:8321446-8321465 None:intergenic 55.0%
GGCATCCCTGGACTAAGTTC+AGG + chr5_3:8321557-8321576 None:intergenic 55.0%
! TTTGCATTGGCGGGAAGAGC+AGG + chr5_3:8322305-8322324 None:intergenic 55.0%
CGTCGAACAGCTTCATGGAG+TGG - chr5_3:8322560-8322579 Msa0796250:intron 55.0%
TAAGCCTTCAGGGGCAGCTT+TGG - chr5_3:8322625-8322644 Msa0796250:intron 55.0%
AAGCCTTCAGGGGCAGCTTT+GGG - chr5_3:8322626-8322645 Msa0796250:intron 55.0%
ATGGGAACGGGGAATGGAGA+TGG + chr5_3:8322886-8322905 None:intergenic 55.0%
AAAGTTCCCAACTCCCGACC+TGG - chr5_3:8322924-8322943 Msa0796250:intron 55.0%
ACATCTCCAGGTCGGGAGTT+GGG + chr5_3:8322933-8322952 None:intergenic 55.0%
TACATCTCCAGGTCGGGAGT+TGG + chr5_3:8322934-8322953 None:intergenic 55.0%
! GGAAGGTATGCAAGTAGGGG+TGG - chr5_3:8323303-8323322 Msa0796250:CDS 55.0%
! CGGAGCACGGCCAGTTTTCA+AGG + chr5_3:8320523-8320542 None:intergenic 60.0%
!! GGCAGGGAAGTACCTGTTGG+TGG + chr5_3:8320599-8320618 None:intergenic 60.0%
! AGCACTGCCCATCGGGTTGT+TGG - chr5_3:8320742-8320761 Msa0796250:intron 60.0%
! ACTGCCCATCGGGTTGTTGG+TGG - chr5_3:8320745-8320764 Msa0796250:intron 60.0%
TCGCCATCGCCTGATGCACA+AGG - chr5_3:8321099-8321118 Msa0796250:intron 60.0%
GGCAGAGCAGCTTCTTCAGC+TGG + chr5_3:8321416-8321435 None:intergenic 60.0%
ATGCCCAAAGCTGCCCCTGA+AGG + chr5_3:8322632-8322651 None:intergenic 60.0%
ATGCAGGCGCCTACGAGAAG+TGG - chr5_3:8322689-8322708 Msa0796250:intron 60.0%
TGCCCTGCCAGGGAGAAAGA+TGG - chr5_3:8323125-8323144 Msa0796250:intron 60.0%
GGCCATCTTTCTCCCTGGCA+GGG + chr5_3:8323130-8323149 None:intergenic 60.0%
AGGCCATCTTTCTCCCTGGC+AGG + chr5_3:8323131-8323150 None:intergenic 60.0%
! ATTCCCATGGCAGGGCTAGC+CGG - chr5_3:8323891-8323910 Msa0796250:five_prime_UTR 60.0%
! ATACCGGCTAGCCCTGCCAT+GGG + chr5_3:8323897-8323916 None:intergenic 60.0%
ACCATGCCCCCCTAGATGCA+AGG - chr5_3:8324536-8324555 Msa0796250:five_prime_UTR 60.0%
! GCAGTTGTCGGAGGTGGTGG+TGG + chr5_3:8321437-8321456 None:intergenic 65.0%
GCAGCAGTTGTCGGAGGTGG+TGG + chr5_3:8321440-8321459 None:intergenic 65.0%
!! GGTGGTATCGGTGGCATCCC+TGG + chr5_3:8321569-8321588 None:intergenic 65.0%
! GATACCGGCTAGCCCTGCCA+TGG + chr5_3:8323898-8323917 None:intergenic 65.0%
GCCTTGCATCTAGGGGGGCA+TGG + chr5_3:8324540-8324559 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 8316519 8324670 8316519 ID=Msa0796250;Name=Msa0796250
chr5_3 mRNA 8316519 8324670 8316519 ID=Msa0796250-mRNA-1;Parent=Msa0796250;Name=Msa0796250-mRNA-1;_AED=0.08;_eAED=0.08;_QI=443|0.91|0.92|1|0.75|0.53|13|1701|353
chr5_3 exon 8316519 8316632 8316519 ID=Msa0796250-mRNA-1:exon:3473;Parent=Msa0796250-mRNA-1
chr5_3 exon 8317874 8318963 8317874 ID=Msa0796250-mRNA-1:exon:3472;Parent=Msa0796250-mRNA-1
chr5_3 exon 8319553 8319851 8319553 ID=Msa0796250-mRNA-1:exon:3471;Parent=Msa0796250-mRNA-1
chr5_3 exon 8319966 8320093 8319966 ID=Msa0796250-mRNA-1:exon:3470;Parent=Msa0796250-mRNA-1
chr5_3 exon 8320189 8320510 8320189 ID=Msa0796250-mRNA-1:exon:3469;Parent=Msa0796250-mRNA-1
chr5_3 exon 8320584 8320692 8320584 ID=Msa0796250-mRNA-1:exon:3468;Parent=Msa0796250-mRNA-1
chr5_3 exon 8320764 8320891 8320764 ID=Msa0796250-mRNA-1:exon:3467;Parent=Msa0796250-mRNA-1
chr5_3 exon 8322802 8322936 8322802 ID=Msa0796250-mRNA-1:exon:3466;Parent=Msa0796250-mRNA-1
chr5_3 exon 8323018 8323143 8323018 ID=Msa0796250-mRNA-1:exon:3465;Parent=Msa0796250-mRNA-1
chr5_3 exon 8323278 8323448 8323278 ID=Msa0796250-mRNA-1:exon:3464;Parent=Msa0796250-mRNA-1
chr5_3 exon 8323593 8323728 8323593 ID=Msa0796250-mRNA-1:exon:3463;Parent=Msa0796250-mRNA-1
chr5_3 exon 8323804 8323930 8323804 ID=Msa0796250-mRNA-1:exon:3462;Parent=Msa0796250-mRNA-1
chr5_3 exon 8324350 8324670 8324350 ID=Msa0796250-mRNA-1:exon:3461;Parent=Msa0796250-mRNA-1
chr5_3 five_prime_UTR 8324350 8324670 8324350 ID=Msa0796250-mRNA-1:five_prime_utr;Parent=Msa0796250-mRNA-1
chr5_3 five_prime_UTR 8323809 8323930 8323809 ID=Msa0796250-mRNA-1:five_prime_utr;Parent=Msa0796250-mRNA-1
chr5_3 CDS 8323804 8323808 8323804 ID=Msa0796250-mRNA-1:cds;Parent=Msa0796250-mRNA-1
chr5_3 CDS 8323593 8323728 8323593 ID=Msa0796250-mRNA-1:cds;Parent=Msa0796250-mRNA-1
chr5_3 CDS 8323278 8323448 8323278 ID=Msa0796250-mRNA-1:cds;Parent=Msa0796250-mRNA-1
chr5_3 CDS 8323018 8323143 8323018 ID=Msa0796250-mRNA-1:cds;Parent=Msa0796250-mRNA-1
chr5_3 CDS 8322802 8322936 8322802 ID=Msa0796250-mRNA-1:cds;Parent=Msa0796250-mRNA-1
chr5_3 CDS 8320764 8320891 8320764 ID=Msa0796250-mRNA-1:cds;Parent=Msa0796250-mRNA-1
chr5_3 CDS 8320584 8320692 8320584 ID=Msa0796250-mRNA-1:cds;Parent=Msa0796250-mRNA-1
chr5_3 CDS 8320259 8320510 8320259 ID=Msa0796250-mRNA-1:cds;Parent=Msa0796250-mRNA-1
chr5_3 three_prime_UTR 8320189 8320258 8320189 ID=Msa0796250-mRNA-1:three_prime_utr;Parent=Msa0796250-mRNA-1
chr5_3 three_prime_UTR 8319966 8320093 8319966 ID=Msa0796250-mRNA-1:three_prime_utr;Parent=Msa0796250-mRNA-1
chr5_3 three_prime_UTR 8319553 8319851 8319553 ID=Msa0796250-mRNA-1:three_prime_utr;Parent=Msa0796250-mRNA-1
chr5_3 three_prime_UTR 8317874 8318963 8317874 ID=Msa0796250-mRNA-1:three_prime_utr;Parent=Msa0796250-mRNA-1
chr5_3 three_prime_UTR 8316519 8316632 8316519 ID=Msa0796250-mRNA-1:three_prime_utr;Parent=Msa0796250-mRNA-1
Gene Sequence

>Msa0796250

ATGAAGCATTTGCTTCTAATTGATCTATTGCTTCTGAAGTCAATCTTCTTGTCTCTGCAAAAGATGGAGGCTTTACAGCGTGCACAAGAAGGGCAATTGTGGGGACCTGCACTTGTTCTTGCTTCACAACTCGGTGAGCAGTTCTATGTTGATACAGTAAGGCAAATGGCACTTCGTCAGTTGGTTGCAGGGTCACCTCTACGCACATTATGCCTTTTAATTGCTGGGCGACCAAATGATGTATTCCCTACTGAAGAAACCTCAATTAGTGGGCATCCTGGTGCTTTTGGTATGCCTCAGCAGTCTGAACAGGCTGGATCTAATGATATGCTTGAAGACTGGGAGGAAAATCTGGCTGTAATAACTGCAAACAGAACCAAAGGTGACGAACTTGTAATGATGCACCTTGGTGATTGCTTGTGGAAGGAAAAAAGAGAGATTACTGCTGCACACATCTGCTATTTAATTGCTGAAGTAAACTTCTCGTCATACTCGGACGCTGCAAGACTTTGCCTAATAGGAGCAGATCACTGGACATGTCCTCGAACTTATGCTAGTCCAGAAGCTATTCAGAGGACAGAGTTATATGAATATTCAAAGCTGCTTGGAAACTCTCAGTTTGTTTTGCATTCATTTCAACCATATAAGCTTATATATGCACATATGCTAGCTGAAGTGGGAAAGGTTTCGGACTCATTGAAGTACTGCCAAGCAGTACTGAAATCCTTGAAAACTGGCCGTGCTCCGGAAGTAGAAACGTGGAAACAGCTGGTATTAGCTCTCGAGGAGAGACTTAGGACCCACCAACAGGGTGGATATGCTGCAAATTTAGCTCCTGCAAAATTAGTTGGTAAATTGCTCAACTTTTTTGATAGCACTGCCCATCGGGTTGTTGGTGGTTTACCACCACCTGCTCCAACATCATCACAAGGAACTGTTCATGGAAGTGAACAACATTACCAGCATATGGCACCAAGAGTATCCACTAGCCAGTCAACAATGGTCATGTCATCTTTAGTTCCGTCTGCTTCTCTGGAACCCATAAGTGAGTGGGACAGCTGA
Protein sequence

>Msa0796250

MKHLLLIDLLLLKSIFLSLQKMEALQRAQEGQLWGPALVLASQLGEQFYVDTVRQMALRQLVAGSPLRTLCLLIAGRPNDVFPTEETSISGHPGAFGMPQQSEQAGSNDMLEDWEENLAVITANRTKGDELVMMHLGDCLWKEKREITAAHICYLIAEVNFSSYSDAARLCLIGADHWTCPRTYASPEAIQRTELYEYSKLLGNSQFVLHSFQPYKLIYAHMLAEVGKVSDSLKYCQAVLKSLKTGRAPEVETWKQLVLALEERLRTHQQGGYAANLAPAKLVGKLLNFFDSTAHRVVGGLPPPAPTSSQGTVHGSEQHYQHMAPRVSTSQSTMVMSSLVPSASLEPISEWDS*