AlfalfaGEDB | Msa1300420

M. sativa cultivar zhongmu-4 / Msa1300420

KEGG: -
GO: GO:0005575 GO:0016020
PFAM: PF01940.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1300420	XP_003609194.1	97.586	290	7	0	1	290	1	290	0.0	571

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1300420	sp\|Q0WP96\|PGR_ARATH	65.614	285	98	0	6	290	4	288	3.12e-130	374

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1300420	G7JU49	97.586	290	7	0	1	290	1	290	0.0	571

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0134780	Msa1300420	0.839284	1.737138e-57	-8.615850e-47
Msa0179700	Msa1300420	0.801308	9.573161e-49	-8.615850e-47
Msa0262750	Msa1300420	0.804881	1.745812e-49	-8.615850e-47
Msa0318490	Msa1300420	0.813262	2.798502e-51	-8.615850e-47
Msa0386540	Msa1300420	0.813461	2.530006e-51	-8.615850e-47
Msa0457570	Msa1300420	0.840441	8.680588e-58	-8.615850e-47
Msa0560060	Msa1300420	0.804506	2.091002e-49	-8.615850e-47
Msa0567330	Msa1300420	0.805353	1.390478e-49	-8.615850e-47
Msa0567570	Msa1300420	0.808685	2.743305e-50	-8.615850e-47
Msa0657710	Msa1300420	0.802699	4.957214e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1300420	MtrunA17_Chr4g0062841	97.586	290	7	0	1	290	1	290	0.0	571

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1300420	AT5G19930.1	65.614	285	98	0	6	290	4	288	3.17e-131	374
Msa1300420	AT5G19930.2	65.614	285	98	0	6	290	4	288	3.17e-131	374

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Find 100 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGACAAGATACGAAG+CGG	0.694625	8_3:+61962297	Msa1300420:CDS
AAAATTATTATTCTCCTCTT+TGG	0.231956	8_3:-61961761	None:intergenic
AAAGAGGAGAATAATAATTT+TGG	0.191848	8_3:+61961763	Msa1300420:five_prime_UTR
AAAGAGGTTATTCACCTTGA+AGG	0.422918	8_3:-61963350	None:intergenic
AAAGGAGGAAGCCAAATAAA+AGG	0.279137	8_3:+61964795	Msa1300420:three_prime_UTR
AACAACCAACTACCACGAGG+TGG	0.685328	8_3:-61961897	None:intergenic
AACAAGGTGGACAACGAAAC+TGG	0.413804	8_3:+61962339	Msa1300420:CDS
AACAGAGGCAATGCCACTAT+TGG	0.410928	8_3:-61963149	None:intergenic
AAGAACAACCAACTACCACG+AGG	0.800597	8_3:-61961900	None:intergenic
AAGGAGGAAGCCAAATAAAA+GGG	0.546018	8_3:+61964796	Msa1300420:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATCCTGAATTCAAACA+AGG	+	chr8_3:61962323-61962342	Msa1300420:CDS	30.0%
CAAAAAAGGGAACATAGAAA+AGG	-	chr8_3:61962379-61962398	None:intergenic	30.0%
ATGTAGTATAACTCAAGACA+AGG	-	chr8_3:61962421-61962440	None:intergenic	30.0%
CTACAATGGAATATAACTTG+AGG	+	chr8_3:61962546-61962565	Msa1300420:intron	30.0%
GTTGGATACATTTATGTAAG+TGG	-	chr8_3:61962617-61962636	None:intergenic	30.0%
GGGAAATTTATACCAAATTC+AGG	-	chr8_3:61963100-61963119	None:intergenic	30.0%
GTATCCTGAAAAAAACAGTA+GGG	-	chr8_3:61963120-61963139	None:intergenic	30.0%
TGTATCCTGAAAAAAACAGT+AGG	-	chr8_3:61963121-61963140	None:intergenic	30.0%
TATAACTTATAAGCCACTTG+TGG	-	chr8_3:61964071-61964090	None:intergenic	30.0%
TAGAATTCTCAAGCAACTAT+TGG	+	chr8_3:61964333-61964352	Msa1300420:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	61961729	61965011	61961729	ID=Msa1300420;Name=Msa1300420
chr8_3	mRNA	61961729	61965011	61961729	ID=Msa1300420-mRNA-1;Parent=Msa1300420;Name=Msa1300420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=262\|1\|1\|1\|1\|1\|5\|318\|290
chr8_3	exon	61961729	61962145	61961729	ID=Msa1300420-mRNA-1:exon:18343;Parent=Msa1300420-mRNA-1
chr8_3	exon	61962247	61962360	61962247	ID=Msa1300420-mRNA-1:exon:18344;Parent=Msa1300420-mRNA-1
chr8_3	exon	61963135	61963357	61963135	ID=Msa1300420-mRNA-1:exon:18345;Parent=Msa1300420-mRNA-1
chr8_3	exon	61964208	61964456	61964208	ID=Msa1300420-mRNA-1:exon:18346;Parent=Msa1300420-mRNA-1
chr8_3	exon	61964562	61965011	61964562	ID=Msa1300420-mRNA-1:exon:18347;Parent=Msa1300420-mRNA-1
chr8_3	five_prime_UTR	61961729	61961990	61961729	ID=Msa1300420-mRNA-1:five_prime_utr;Parent=Msa1300420-mRNA-1
chr8_3	CDS	61961991	61962145	61961991	ID=Msa1300420-mRNA-1:cds;Parent=Msa1300420-mRNA-1
chr8_3	CDS	61962247	61962360	61962247	ID=Msa1300420-mRNA-1:cds;Parent=Msa1300420-mRNA-1
chr8_3	CDS	61963135	61963357	61963135	ID=Msa1300420-mRNA-1:cds;Parent=Msa1300420-mRNA-1
chr8_3	CDS	61964208	61964456	61964208	ID=Msa1300420-mRNA-1:cds;Parent=Msa1300420-mRNA-1
chr8_3	CDS	61964562	61964693	61964562	ID=Msa1300420-mRNA-1:cds;Parent=Msa1300420-mRNA-1
chr8_3	three_prime_UTR	61964694	61965011	61964694	ID=Msa1300420-mRNA-1:three_prime_utr;Parent=Msa1300420-mRNA-1

Gene Sequence

>Msa1300420

ATGGACCCATCTATTTCTCAGTGGATCCGACCATTGGTTGCTGTCACTGTTGGTTCCTTAATCGCATTCAGAGCTCACAGGAAAAATTCCCTCAGCACTTCTGGTGCACTTGCTGGTTTCTTCGTTATGTCTCTTCACGTTTTTGTTGGATTTAGGTTTGCGGCTATGATATTTGCTTTCTTTTTCACTTCGTCTGCACTCACAAAAAAGGGACAAGATACGAAGCGGTTGATTGATCCTGAATTCAAACAAGGTGGACAACGAAACTGGATACAAGTTCTGGCCAATAGTGGCATTGCCTCTGTTCTGATTGTAGCTTTATGGGTACTAACAGAAGGGAAGGATCAGTGCATGAACTCTAAAGACTCGGCTCTAATTACCGCTCTCATTGGTGGTGTTATTGGCCATTATTGCTGCTGCAATGGAGACACATGGTCTTCTGAGCTTGGAGTTCTCAGTAATGATCGGTCTCGTCTAATCACAACCTTCAAGCCTGTGAGGAAGGGTACAAATGGTGGTGTGACAAAAACAGGACTTCTAGCAGCTGCAGCTGGTGGAAGTGTCATTGGAGTGTCGTATGTTCTTCTAGAACTTTTGACAATCAGGTGTGGGTCTGATAGAATTCTCAAGCAACTATTGGTCATACCCCTCACTACCGTGGCAGGACTATGTGGAAGTATCATTGACTCTCTATTGGGCGCAACATTGCAATTTAGTGGATTCTGCTCTATTCGCCAGAAGGTTGTTGGAAATCCAGGACCAACCGTTAAAAAGATTTCAGGTCTCAGTATTCTTGACAACAATGCAGTGAACTTTGTGTCAATACTATTGACCACAATTTTAACTTCAGTCGCTTGTTTGTACATATTTTAA

Protein sequence

>Msa1300420

MDPSISQWIRPLVAVTVGSLIAFRAHRKNSLSTSGALAGFFVMSLHVFVGFRFAAMIFAFFFTSSALTKKGQDTKRLIDPEFKQGGQRNWIQVLANSGIASVLIVALWVLTEGKDQCMNSKDSALITALIGGVIGHYCCCNGDTWSSELGVLSNDRSRLITTFKPVRKGTNGGVTKTGLLAAAAGGSVIGVSYVLLELLTIRCGSDRILKQLLVIPLTTVAGLCGSIIDSLLGATLQFSGFCSIRQKVVGNPGPTVKKISGLSILDNNAVNFVSILLTTILTSVACLYIF*