Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190720 | XP_003593377.1 | 92.135 | 178 | 14 | 0 | 73 | 250 | 242 | 419 | 1.44e-105 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190720 | sp|Q8LDI5|CXXS1_ARATH | 65.672 | 67 | 23 | 0 | 9 | 75 | 2 | 68 | 3.33e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190720 | G7IK18 | 92.135 | 178 | 14 | 0 | 73 | 250 | 242 | 419 | 6.89e-106 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0150300 | Msa0190720 | 0.823484 | 1.351056e-53 | -8.615850e-47 |
| Msa0190720 | Msa0385580 | 0.800357 | 1.496699e-48 | -8.615850e-47 |
| Msa0190720 | Msa0647500 | 0.812539 | 4.029440e-51 | -8.615850e-47 |
| Msa0190720 | Msa0649490 | 0.802007 | 6.882250e-49 | -8.615850e-47 |
| Msa0190720 | Msa0690150 | 0.802007 | 6.879949e-49 | -8.615850e-47 |
| Msa0190720 | Msa0692950 | 0.819068 | 1.410067e-52 | -8.615850e-47 |
| Msa0190720 | Msa0711780 | 0.817014 | 4.106547e-52 | -8.615850e-47 |
| Msa0190720 | Msa0777990 | 0.801311 | 9.560377e-49 | -8.615850e-47 |
| Msa0190720 | Msa0794670 | 0.811232 | 7.760723e-51 | -8.615850e-47 |
| Msa0190720 | Msa1160590 | 0.800670 | 1.292796e-48 | -8.615850e-47 |
| Msa0190720 | Msa1165920 | 0.808733 | 2.679119e-50 | -8.615850e-47 |
| Msa0190720 | Msa1305660 | 0.809208 | 2.119489e-50 | -8.615850e-47 |
| Msa0190720 | Msa1394290 | 0.808675 | 2.756895e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190720 | MtrunA17_Chr2g0280431 | 92.135 | 178 | 14 | 0 | 73 | 250 | 242 | 419 | 1.33e-109 | 322 |
| Msa0190720 | MtrunA17_Chr2g0280411 | 94.667 | 75 | 4 | 0 | 1 | 75 | 1 | 75 | 2.39e-48 | 155 |
| Msa0190720 | MtrunA17_Chr4g0061741 | 50.617 | 162 | 64 | 5 | 60 | 219 | 119 | 266 | 7.87e-37 | 130 |
| Msa0190720 | MtrunA17_Chr4g0042051 | 60.000 | 80 | 31 | 1 | 5 | 83 | 6 | 85 | 4.40e-27 | 101 |
| Msa0190720 | MtrunA17_Chr2g0319291 | 61.194 | 67 | 26 | 0 | 8 | 74 | 9 | 75 | 4.18e-25 | 96.3 |
| Msa0190720 | MtrunA17_Chr3g0113131 | 34.426 | 183 | 90 | 8 | 73 | 236 | 191 | 362 | 5.35e-13 | 67.8 |
| Msa0190720 | MtrunA17_Chr1g0155721 | 35.714 | 70 | 45 | 0 | 9 | 78 | 6 | 75 | 3.70e-11 | 58.9 |
| Msa0190720 | MtrunA17_Chr3g0142051 | 37.879 | 66 | 41 | 0 | 9 | 74 | 6 | 71 | 4.92e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190720 | AT1G11530.1 | 65.672 | 67 | 23 | 0 | 9 | 75 | 2 | 68 | 3.39e-24 | 94.0 |
| Msa0190720 | AT2G40790.2 | 36.364 | 66 | 42 | 0 | 8 | 73 | 39 | 104 | 2.13e-12 | 63.5 |
| Msa0190720 | AT2G40790.1 | 36.364 | 66 | 42 | 0 | 8 | 73 | 39 | 104 | 2.13e-12 | 63.5 |
| Msa0190720 | AT3G56420.1 | 37.313 | 67 | 42 | 0 | 7 | 73 | 38 | 104 | 4.89e-12 | 62.8 |
| Msa0190720 | AT3G56420.2 | 37.313 | 67 | 42 | 0 | 7 | 73 | 38 | 104 | 4.89e-12 | 62.8 |
| Msa0190720 | AT3G56420.3 | 37.313 | 67 | 42 | 0 | 7 | 73 | 38 | 104 | 4.89e-12 | 62.8 |
| Msa0190720 | AT3G51030.1 | 37.879 | 66 | 41 | 0 | 9 | 74 | 6 | 71 | 1.84e-11 | 60.1 |
Find 44 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAGAAATCAAGCAAAT+AGG | 0.257807 | 2_1:-6245187 | None:intergenic |
| TTGTTCACTTTACTGCTTCA+TGG | 0.264633 | 2_1:-6246133 | Msa0190720:CDS |
| TTGGAGCAAAATTGCTTCTA+AGG | 0.274708 | 2_1:-6245571 | Msa0190720:CDS |
| ACAGAGAGAAACAGAAAATC+TGG | 0.310559 | 2_1:+6246056 | None:intergenic |
| TGAATCGCGCTGAGGTGGTT+AGG | 0.312947 | 2_1:-6245239 | Msa0190720:CDS |
| GTCAGATAGGGTTGAGTTGG+AGG | 0.367989 | 2_1:-6245304 | Msa0190720:CDS |
| TGCTCTCTTATCATGAGCTT+TGG | 0.370081 | 2_1:+6245611 | None:intergenic |
| GCAGACTAGATTGGCATTGC+AGG | 0.370825 | 2_1:-6245214 | Msa0190720:CDS |
| AAGAAGAAATCAAGCAAATA+GGG | 0.379593 | 2_1:-6245186 | None:intergenic |
| GAGAATTCTGATTAGAAGCT+TGG | 0.402282 | 2_1:+6246261 | None:intergenic |
| TCTCTTCAATTGCTGAGCAT+TGG | 0.418880 | 2_1:+6245680 | None:intergenic |
| GAATCGCGCTGAGGTGGTTA+GGG | 0.419146 | 2_1:-6245238 | Msa0190720:CDS |
| TAAGAATGAAAGTGGAAAAG+TGG | 0.453012 | 2_1:-6245442 | Msa0190720:CDS |
| GGAGAGGTGGAAGAAGTTGC+AGG | 0.459564 | 2_1:-6245283 | Msa0190720:CDS |
| AATCACTAAGAGTGCTAAGA+AGG | 0.463625 | 2_1:-6245517 | Msa0190720:CDS |
| TGATTGATTCTTTGCAATCA+TGG | 0.469609 | 2_1:-6246298 | Msa0190720:CDS |
| ATAGTTACTAAGAATGAAAG+TGG | 0.473928 | 2_1:-6245450 | Msa0190720:CDS |
| GGAGTCAGATAGGGTTGAGT+TGG | 0.474759 | 2_1:-6245307 | Msa0190720:CDS |
| GGGTATAGCTGTGCTGGATA+AGG | 0.490129 | 2_1:-6245361 | Msa0190720:CDS |
| GGGTTGAGTTGGAGGAGAGG+TGG | 0.490174 | 2_1:-6245296 | Msa0190720:CDS |
| TCTAAGGAAGCTGAAGAAAA+CGG | 0.508657 | 2_1:-6245555 | Msa0190720:CDS |
| AAATGGTGGTTCTGCTAGGA+AGG | 0.513798 | 2_1:-6245481 | Msa0190720:CDS |
| GAAGTTGCAGGCTGCCGAGA+TGG | 0.515486 | 2_1:-6245271 | Msa0190720:CDS |
| ATAGGGTTGAGTTGGAGGAG+AGG | 0.516403 | 2_1:-6245299 | Msa0190720:CDS |
| GGTTAGGGAGCAGACTAGAT+TGG | 0.517395 | 2_1:-6245223 | Msa0190720:CDS |
| AGAATCAATCACCACTACCT+TGG | 0.527546 | 2_1:+6246310 | None:intergenic |
| GTTAAATTTGATGAGGCTGC+GGG | 0.528643 | 2_1:-6245381 | Msa0190720:CDS |
| TGCTCAGCAATTGAAGAGAA+AGG | 0.529680 | 2_1:-6245676 | Msa0190720:CDS |
| GGCTGCGGGTATAGCTGTGC+TGG | 0.534970 | 2_1:-6245367 | Msa0190720:CDS |
| GGTTAAATTTGATGAGGCTG+CGG | 0.538193 | 2_1:-6245382 | Msa0190720:CDS |
| GCAAAACAAGTCCAAGGTAG+TGG | 0.548033 | 2_1:-6246321 | Msa0190720:CDS |
| GATTGATTCTTTGCAATCAT+GGG | 0.549324 | 2_1:-6246297 | Msa0190720:CDS |
| CAATTGAAGAGAAAGGTTCG+TGG | 0.552666 | 2_1:-6245669 | Msa0190720:CDS |
| AAAAGCGGTTTGGAATTGAT+GGG | 0.574547 | 2_1:-6245330 | Msa0190720:CDS |
| AATGGAATCATAGCCACTGA+TGG | 0.585805 | 2_1:+6246104 | None:intergenic |
| CAGAGAGAAACAGAAAATCT+GGG | 0.587856 | 2_1:+6246057 | None:intergenic |
| TTCATGGTGCATGCCATCAG+TGG | 0.591969 | 2_1:-6246117 | Msa0190720:CDS |
| GAAAGTGGAAAAGTGGAAAG+TGG | 0.593025 | 2_1:-6245435 | Msa0190720:CDS |
| CATAGAGCAAAACAAGTCCA+AGG | 0.613866 | 2_1:-6246327 | Msa0190720:CDS |
| GGAAAAGTGGAAAGTGGTGT+TGG | 0.619417 | 2_1:-6245429 | Msa0190720:CDS |
| AAAGCGGTTTGGAATTGATG+GGG | 0.621162 | 2_1:-6245329 | Msa0190720:CDS |
| TGTTGATGTTGATGAAGTCA+AGG | 0.653275 | 2_1:-6246036 | Msa0190720:intron |
| CGAACTGGTTAAATTTGATG+AGG | 0.653994 | 2_1:-6245388 | Msa0190720:CDS |
| AAGCGGTTTGGAATTGATGG+GGG | 0.669970 | 2_1:-6245328 | Msa0190720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GACTGTTTATAAAGAATTAA+AGG | + | chr2_1:6245328-6245347 | None:intergenic | 20.0% |
| !! | TACAAGAATTGAAAACAAAT+GGG | + | chr2_1:6245525-6245544 | None:intergenic | 20.0% |
| !! | GACTGTTTATAAAGAATTAA+AGG | + | chr2_1:6245328-6245347 | None:intergenic | 20.0% |
| !! | TACAAGAATTGAAAACAAAT+GGG | + | chr2_1:6245525-6245544 | None:intergenic | 20.0% |
| ! | CTACAAGAATTGAAAACAAA+TGG | + | chr2_1:6245526-6245545 | None:intergenic | 25.0% |
| ! | TGATGTGTTTAGATATGTAA+TGG | + | chr2_1:6245602-6245621 | None:intergenic | 25.0% |
| ! | TATGCTATATGAGAACATTA+TGG | - | chr2_1:6245692-6245711 | Msa0190720:CDS | 25.0% |
| ! | ATAGTTACTAAGAATGAAAG+TGG | - | chr2_1:6246073-6246092 | Msa0190720:CDS | 25.0% |
| ! | CTACAAGAATTGAAAACAAA+TGG | + | chr2_1:6245526-6245545 | None:intergenic | 25.0% |
| ! | TGATGTGTTTAGATATGTAA+TGG | + | chr2_1:6245602-6245621 | None:intergenic | 25.0% |
| ! | TATGCTATATGAGAACATTA+TGG | - | chr2_1:6245692-6245711 | Msa0190720:CDS | 25.0% |
| ! | ATAGTTACTAAGAATGAAAG+TGG | - | chr2_1:6246073-6246092 | Msa0190720:CDS | 25.0% |
| ! | TGATTGATTCTTTGCAATCA+TGG | - | chr2_1:6245225-6245244 | Msa0190720:CDS | 30.0% |
| ! | GATTGATTCTTTGCAATCAT+GGG | - | chr2_1:6245226-6245245 | Msa0190720:CDS | 30.0% |
| ! | ACATTGAAACTTTGACTTAC+AGG | + | chr2_1:6245287-6245306 | None:intergenic | 30.0% |
| TTTAGATATGTAATGGTACG+AGG | + | chr2_1:6245595-6245614 | None:intergenic | 30.0% | |
| ! | TGGAAATCAAAACCTTTTTG+TGG | - | chr2_1:6245662-6245681 | Msa0190720:CDS | 30.0% |
| GCATATCTATATCCACAAAA+AGG | + | chr2_1:6245677-6245696 | None:intergenic | 30.0% | |
| !! | CATTTGATCTTTTCAAGGTT+TGG | - | chr2_1:6245933-6245952 | Msa0190720:intron | 30.0% |
| TAAGAATGAAAGTGGAAAAG+TGG | - | chr2_1:6246081-6246100 | Msa0190720:CDS | 30.0% | |
| ATTCAAAAACACTTCCATCT+CGG | + | chr2_1:6246269-6246288 | None:intergenic | 30.0% | |
| ! | TGATTGATTCTTTGCAATCA+TGG | - | chr2_1:6245225-6245244 | Msa0190720:CDS | 30.0% |
| ! | GATTGATTCTTTGCAATCAT+GGG | - | chr2_1:6245226-6245245 | Msa0190720:CDS | 30.0% |
| ! | ACATTGAAACTTTGACTTAC+AGG | + | chr2_1:6245287-6245306 | None:intergenic | 30.0% |
| TTTAGATATGTAATGGTACG+AGG | + | chr2_1:6245595-6245614 | None:intergenic | 30.0% | |
| ! | TGGAAATCAAAACCTTTTTG+TGG | - | chr2_1:6245662-6245681 | Msa0190720:CDS | 30.0% |
| GCATATCTATATCCACAAAA+AGG | + | chr2_1:6245677-6245696 | None:intergenic | 30.0% | |
| !! | CATTTGATCTTTTCAAGGTT+TGG | - | chr2_1:6245933-6245952 | Msa0190720:intron | 30.0% |
| TAAGAATGAAAGTGGAAAAG+TGG | - | chr2_1:6246081-6246100 | Msa0190720:CDS | 30.0% | |
| ATTCAAAAACACTTCCATCT+CGG | + | chr2_1:6246269-6246288 | None:intergenic | 30.0% | |
| GAGAATTCTGATTAGAAGCT+TGG | + | chr2_1:6245265-6245284 | None:intergenic | 35.0% | |
| !! | CAGTCTTCAAATTGATTTGC+TGG | - | chr2_1:6245343-6245362 | Msa0190720:CDS | 35.0% |
| TTGTTCACTTTACTGCTTCA+TGG | - | chr2_1:6245390-6245409 | Msa0190720:CDS | 35.0% | |
| GATGCGAATTCTTCGAAAAA+TGG | + | chr2_1:6245440-6245459 | None:intergenic | 35.0% | |
| CAGAGAGAAACAGAAAATCT+GGG | + | chr2_1:6245469-6245488 | None:intergenic | 35.0% | |
| ACAGAGAGAAACAGAAAATC+TGG | + | chr2_1:6245470-6245489 | None:intergenic | 35.0% | |
| ! | TGTTGATGTTGATGAAGTCA+AGG | - | chr2_1:6245487-6245506 | Msa0190720:CDS | 35.0% |
| !!! | GAGAGCATTTGATCTTTTCA+AGG | - | chr2_1:6245928-6245947 | Msa0190720:intron | 35.0% |
| TTGGAGCAAAATTGCTTCTA+AGG | - | chr2_1:6245952-6245971 | Msa0190720:intron | 35.0% | |
| TCTAAGGAAGCTGAAGAAAA+CGG | - | chr2_1:6245968-6245987 | Msa0190720:intron | 35.0% | |
| !! | AATCACTAAGAGTGCTAAGA+AGG | - | chr2_1:6246006-6246025 | Msa0190720:intron | 35.0% |
| AAGGAAGCTCCTGTTAAAAA+TGG | - | chr2_1:6246025-6246044 | Msa0190720:intron | 35.0% | |
| ! | TTAAAAATGGTGGTTCTGCT+AGG | - | chr2_1:6246038-6246057 | Msa0190720:CDS | 35.0% |
| CGAACTGGTTAAATTTGATG+AGG | - | chr2_1:6246135-6246154 | Msa0190720:CDS | 35.0% | |
| ! | AAAAAGCGGTTTGGAATTGA+TGG | - | chr2_1:6246192-6246211 | Msa0190720:intron | 35.0% |
| ! | AAAAGCGGTTTGGAATTGAT+GGG | - | chr2_1:6246193-6246212 | Msa0190720:intron | 35.0% |
| GAGAATTCTGATTAGAAGCT+TGG | + | chr2_1:6245265-6245284 | None:intergenic | 35.0% | |
| !! | CAGTCTTCAAATTGATTTGC+TGG | - | chr2_1:6245343-6245362 | Msa0190720:CDS | 35.0% |
| TTGTTCACTTTACTGCTTCA+TGG | - | chr2_1:6245390-6245409 | Msa0190720:CDS | 35.0% | |
| GATGCGAATTCTTCGAAAAA+TGG | + | chr2_1:6245440-6245459 | None:intergenic | 35.0% | |
| CAGAGAGAAACAGAAAATCT+GGG | + | chr2_1:6245469-6245488 | None:intergenic | 35.0% | |
| ACAGAGAGAAACAGAAAATC+TGG | + | chr2_1:6245470-6245489 | None:intergenic | 35.0% | |
| ! | TGTTGATGTTGATGAAGTCA+AGG | - | chr2_1:6245487-6245506 | Msa0190720:CDS | 35.0% |
| !!! | GAGAGCATTTGATCTTTTCA+AGG | - | chr2_1:6245928-6245947 | Msa0190720:intron | 35.0% |
| TTGGAGCAAAATTGCTTCTA+AGG | - | chr2_1:6245952-6245971 | Msa0190720:intron | 35.0% | |
| TCTAAGGAAGCTGAAGAAAA+CGG | - | chr2_1:6245968-6245987 | Msa0190720:intron | 35.0% | |
| !! | AATCACTAAGAGTGCTAAGA+AGG | - | chr2_1:6246006-6246025 | Msa0190720:intron | 35.0% |
| AAGGAAGCTCCTGTTAAAAA+TGG | - | chr2_1:6246025-6246044 | Msa0190720:intron | 35.0% | |
| ! | TTAAAAATGGTGGTTCTGCT+AGG | - | chr2_1:6246038-6246057 | Msa0190720:CDS | 35.0% |
| CGAACTGGTTAAATTTGATG+AGG | - | chr2_1:6246135-6246154 | Msa0190720:CDS | 35.0% | |
| ! | AAAAAGCGGTTTGGAATTGA+TGG | - | chr2_1:6246192-6246211 | Msa0190720:intron | 35.0% |
| ! | AAAAGCGGTTTGGAATTGAT+GGG | - | chr2_1:6246193-6246212 | Msa0190720:intron | 35.0% |
| !!! | CTTGGACTTGTTTTGCTCTA+TGG | + | chr2_1:6245198-6245217 | None:intergenic | 40.0% |
| CATAGAGCAAAACAAGTCCA+AGG | - | chr2_1:6245196-6245215 | Msa0190720:CDS | 40.0% | |
| AGAATCAATCACCACTACCT+TGG | + | chr2_1:6245216-6245235 | None:intergenic | 40.0% | |
| AATGGAATCATAGCCACTGA+TGG | + | chr2_1:6245422-6245441 | None:intergenic | 40.0% | |
| CTGTCAACTTTCTGTTTGAG+TGG | - | chr2_1:6245642-6245661 | Msa0190720:CDS | 40.0% | |
| GAAGAAATCGATGAAAGCTG+AGG | - | chr2_1:6245820-6245839 | Msa0190720:intron | 40.0% | |
| TCTCTTCAATTGCTGAGCAT+TGG | + | chr2_1:6245846-6245865 | None:intergenic | 40.0% | |
| TGCTCAGCAATTGAAGAGAA+AGG | - | chr2_1:6245847-6245866 | Msa0190720:intron | 40.0% | |
| CAATTGAAGAGAAAGGTTCG+TGG | - | chr2_1:6245854-6245873 | Msa0190720:intron | 40.0% | |
| TGCTCTCTTATCATGAGCTT+TGG | + | chr2_1:6245915-6245934 | None:intergenic | 40.0% | |
| GAAGCTCCTGTTAAAAATGG+TGG | - | chr2_1:6246028-6246047 | Msa0190720:intron | 40.0% | |
| !! | GCAGAACCACCATTTTTAAC+AGG | + | chr2_1:6246037-6246056 | None:intergenic | 40.0% |
| GAAAGTGGAAAAGTGGAAAG+TGG | - | chr2_1:6246088-6246107 | Msa0190720:CDS | 40.0% | |
| ! | GAGTTTCATTTTGAGCGAAC+TGG | - | chr2_1:6246120-6246139 | Msa0190720:CDS | 40.0% |
| GGTTAAATTTGATGAGGCTG+CGG | - | chr2_1:6246141-6246160 | Msa0190720:intron | 40.0% | |
| GTTAAATTTGATGAGGCTGC+GGG | - | chr2_1:6246142-6246161 | Msa0190720:intron | 40.0% | |
| GATAAGGATGCTGCAAAAAG+CGG | - | chr2_1:6246178-6246197 | Msa0190720:intron | 40.0% | |
| ! | AAAGCGGTTTGGAATTGATG+GGG | - | chr2_1:6246194-6246213 | Msa0190720:intron | 40.0% |
| !!! | CTTGGACTTGTTTTGCTCTA+TGG | + | chr2_1:6245198-6245217 | None:intergenic | 40.0% |
| CATAGAGCAAAACAAGTCCA+AGG | - | chr2_1:6245196-6245215 | Msa0190720:CDS | 40.0% | |
| AGAATCAATCACCACTACCT+TGG | + | chr2_1:6245216-6245235 | None:intergenic | 40.0% | |
| AATGGAATCATAGCCACTGA+TGG | + | chr2_1:6245422-6245441 | None:intergenic | 40.0% | |
| CTGTCAACTTTCTGTTTGAG+TGG | - | chr2_1:6245642-6245661 | Msa0190720:CDS | 40.0% | |
| GAAGAAATCGATGAAAGCTG+AGG | - | chr2_1:6245820-6245839 | Msa0190720:intron | 40.0% | |
| TCTCTTCAATTGCTGAGCAT+TGG | + | chr2_1:6245846-6245865 | None:intergenic | 40.0% | |
| TGCTCAGCAATTGAAGAGAA+AGG | - | chr2_1:6245847-6245866 | Msa0190720:intron | 40.0% | |
| CAATTGAAGAGAAAGGTTCG+TGG | - | chr2_1:6245854-6245873 | Msa0190720:intron | 40.0% | |
| TGCTCTCTTATCATGAGCTT+TGG | + | chr2_1:6245915-6245934 | None:intergenic | 40.0% | |
| GAAGCTCCTGTTAAAAATGG+TGG | - | chr2_1:6246028-6246047 | Msa0190720:intron | 40.0% | |
| !! | GCAGAACCACCATTTTTAAC+AGG | + | chr2_1:6246037-6246056 | None:intergenic | 40.0% |
| GAAAGTGGAAAAGTGGAAAG+TGG | - | chr2_1:6246088-6246107 | Msa0190720:CDS | 40.0% | |
| ! | GAGTTTCATTTTGAGCGAAC+TGG | - | chr2_1:6246120-6246139 | Msa0190720:CDS | 40.0% |
| GGTTAAATTTGATGAGGCTG+CGG | - | chr2_1:6246141-6246160 | Msa0190720:intron | 40.0% | |
| GTTAAATTTGATGAGGCTGC+GGG | - | chr2_1:6246142-6246161 | Msa0190720:intron | 40.0% | |
| GATAAGGATGCTGCAAAAAG+CGG | - | chr2_1:6246178-6246197 | Msa0190720:intron | 40.0% | |
| ! | AAAGCGGTTTGGAATTGATG+GGG | - | chr2_1:6246194-6246213 | Msa0190720:intron | 40.0% |
| GCAAAACAAGTCCAAGGTAG+TGG | - | chr2_1:6245202-6245221 | Msa0190720:CDS | 45.0% | |
| ! | AAATGGTGGTTCTGCTAGGA+AGG | - | chr2_1:6246042-6246061 | Msa0190720:CDS | 45.0% |
| GGAAAAGTGGAAAGTGGTGT+TGG | - | chr2_1:6246094-6246113 | Msa0190720:CDS | 45.0% | |
| ! | AAGCGGTTTGGAATTGATGG+GGG | - | chr2_1:6246195-6246214 | Msa0190720:intron | 45.0% |
| AATTGATGGGGGAGTCAGAT+AGG | - | chr2_1:6246206-6246225 | Msa0190720:intron | 45.0% | |
| ATTGATGGGGGAGTCAGATA+GGG | - | chr2_1:6246207-6246226 | Msa0190720:intron | 45.0% | |
| !! | AGTGTTTTTGAATCGCGCTG+AGG | - | chr2_1:6246276-6246295 | Msa0190720:CDS | 45.0% |
| GCAAAACAAGTCCAAGGTAG+TGG | - | chr2_1:6245202-6245221 | Msa0190720:CDS | 45.0% | |
| ! | AAATGGTGGTTCTGCTAGGA+AGG | - | chr2_1:6246042-6246061 | Msa0190720:CDS | 45.0% |
| GGAAAAGTGGAAAGTGGTGT+TGG | - | chr2_1:6246094-6246113 | Msa0190720:CDS | 45.0% | |
| ! | AAGCGGTTTGGAATTGATGG+GGG | - | chr2_1:6246195-6246214 | Msa0190720:intron | 45.0% |
| AATTGATGGGGGAGTCAGAT+AGG | - | chr2_1:6246206-6246225 | Msa0190720:intron | 45.0% | |
| ATTGATGGGGGAGTCAGATA+GGG | - | chr2_1:6246207-6246226 | Msa0190720:intron | 45.0% | |
| !! | AGTGTTTTTGAATCGCGCTG+AGG | - | chr2_1:6246276-6246295 | Msa0190720:CDS | 45.0% |
| TTCATGGTGCATGCCATCAG+TGG | - | chr2_1:6245406-6245425 | Msa0190720:CDS | 50.0% | |
| GGGTATAGCTGTGCTGGATA+AGG | - | chr2_1:6246162-6246181 | Msa0190720:intron | 50.0% | |
| GGATGCTGCAAAAAGCGGTT+TGG | - | chr2_1:6246183-6246202 | Msa0190720:intron | 50.0% | |
| GGAGTCAGATAGGGTTGAGT+TGG | - | chr2_1:6246216-6246235 | Msa0190720:intron | 50.0% | |
| !! | GTCAGATAGGGTTGAGTTGG+AGG | - | chr2_1:6246219-6246238 | Msa0190720:intron | 50.0% |
| !! | ATAGGGTTGAGTTGGAGGAG+AGG | - | chr2_1:6246224-6246243 | Msa0190720:intron | 50.0% |
| ! | GTTTTTGAATCGCGCTGAGG+TGG | - | chr2_1:6246279-6246298 | Msa0190720:CDS | 50.0% |
| GGTTAGGGAGCAGACTAGAT+TGG | - | chr2_1:6246300-6246319 | Msa0190720:CDS | 50.0% | |
| GCAGACTAGATTGGCATTGC+AGG | - | chr2_1:6246309-6246328 | Msa0190720:CDS | 50.0% | |
| TTCATGGTGCATGCCATCAG+TGG | - | chr2_1:6245406-6245425 | Msa0190720:CDS | 50.0% | |
| GGGTATAGCTGTGCTGGATA+AGG | - | chr2_1:6246162-6246181 | Msa0190720:intron | 50.0% | |
| GGATGCTGCAAAAAGCGGTT+TGG | - | chr2_1:6246183-6246202 | Msa0190720:intron | 50.0% | |
| GGAGTCAGATAGGGTTGAGT+TGG | - | chr2_1:6246216-6246235 | Msa0190720:intron | 50.0% | |
| !! | GTCAGATAGGGTTGAGTTGG+AGG | - | chr2_1:6246219-6246238 | Msa0190720:intron | 50.0% |
| !! | ATAGGGTTGAGTTGGAGGAG+AGG | - | chr2_1:6246224-6246243 | Msa0190720:intron | 50.0% |
| ! | GTTTTTGAATCGCGCTGAGG+TGG | - | chr2_1:6246279-6246298 | Msa0190720:CDS | 50.0% |
| GGTTAGGGAGCAGACTAGAT+TGG | - | chr2_1:6246300-6246319 | Msa0190720:CDS | 50.0% | |
| GCAGACTAGATTGGCATTGC+AGG | - | chr2_1:6246309-6246328 | Msa0190720:CDS | 50.0% | |
| GGAGAGGTGGAAGAAGTTGC+AGG | - | chr2_1:6246240-6246259 | Msa0190720:intron | 55.0% | |
| TGAATCGCGCTGAGGTGGTT+AGG | - | chr2_1:6246284-6246303 | Msa0190720:CDS | 55.0% | |
| GAATCGCGCTGAGGTGGTTA+GGG | - | chr2_1:6246285-6246304 | Msa0190720:CDS | 55.0% | |
| GGAGAGGTGGAAGAAGTTGC+AGG | - | chr2_1:6246240-6246259 | Msa0190720:intron | 55.0% | |
| TGAATCGCGCTGAGGTGGTT+AGG | - | chr2_1:6246284-6246303 | Msa0190720:CDS | 55.0% | |
| GAATCGCGCTGAGGTGGTTA+GGG | - | chr2_1:6246285-6246304 | Msa0190720:CDS | 55.0% | |
| !! | GGGTTGAGTTGGAGGAGAGG+TGG | - | chr2_1:6246227-6246246 | Msa0190720:intron | 60.0% |
| GAAGTTGCAGGCTGCCGAGA+TGG | - | chr2_1:6246252-6246271 | Msa0190720:intron | 60.0% | |
| !! | GGGTTGAGTTGGAGGAGAGG+TGG | - | chr2_1:6246227-6246246 | Msa0190720:intron | 60.0% |
| GAAGTTGCAGGCTGCCGAGA+TGG | - | chr2_1:6246252-6246271 | Msa0190720:intron | 60.0% | |
| GGCTGCGGGTATAGCTGTGC+TGG | - | chr2_1:6246156-6246175 | Msa0190720:intron | 65.0% | |
| GGCTGCGGGTATAGCTGTGC+TGG | - | chr2_1:6246156-6246175 | Msa0190720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 6245188 | 6246357 | 6245188 | ID=Msa0190720;Name=Msa0190720 |
| chr2_1 | mRNA | 6245188 | 6246357 | 6245188 | ID=Msa0190720-mRNA-1;Parent=Msa0190720;Name=Msa0190720-mRNA-1;_AED=0.53;_eAED=0.53;_QI=0|0|0|0.66|1|1|3|0|251 |
| chr2_1 | exon | 6246259 | 6246357 | 6246259 | ID=Msa0190720-mRNA-1:exon:2850;Parent=Msa0190720-mRNA-1 |
| chr2_1 | exon | 6246037 | 6246159 | 6246037 | ID=Msa0190720-mRNA-1:exon:2849;Parent=Msa0190720-mRNA-1 |
| chr2_1 | exon | 6245188 | 6245721 | 6245188 | ID=Msa0190720-mRNA-1:exon:2848;Parent=Msa0190720-mRNA-1 |
| chr2_1 | CDS | 6246259 | 6246357 | 6246259 | ID=Msa0190720-mRNA-1:cds;Parent=Msa0190720-mRNA-1 |
| chr2_1 | CDS | 6246037 | 6246159 | 6246037 | ID=Msa0190720-mRNA-1:cds;Parent=Msa0190720-mRNA-1 |
| chr2_1 | CDS | 6245188 | 6245721 | 6245188 | ID=Msa0190720-mRNA-1:cds;Parent=Msa0190720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
