AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649490 MtrunA17_Chr4g0041421 94.737 57 3 0 68 124 35 91 3.09e-34 114
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649490 AT2G43810.2 61.176 85 28 1 45 124 7 91 5.22e-30 103
Msa0649490 AT2G43810.3 61.176 85 28 1 45 124 7 91 5.22e-30 103
Msa0649490 AT2G43810.1 61.176 85 28 1 45 124 7 91 5.22e-30 103
Msa0649490 AT3G59810.3 82.456 57 10 0 68 124 35 91 5.59e-29 101
Msa0649490 AT3G59810.1 82.456 57 10 0 68 124 35 91 5.59e-29 101
Msa0649490 AT3G59810.2 82.456 57 10 0 68 124 35 91 5.59e-29 101

Find 63 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCAAACCAACATATATT+TGG 0.145854 4_3:-56147099 None:intergenic
AAATACTTGTTGGCATATTT+TGG 0.173229 4_3:+56147260 Msa0649490:three_prime_UTR
TCATGGTAATTGAGTTTCTA+TGG 0.245285 4_3:+56147198 Msa0649490:three_prime_UTR
GGTATCCTAGCTTGTCTAGA+TGG 0.292896 4_3:+56146836 Msa0649490:intron
GAGGAAATCAGCTGGAGTTT+TGG 0.321197 4_3:-56144394 None:intergenic
GTTGGATTTGGGAGATCATC+AGG 0.343230 4_3:+56145872 Msa0649490:CDS
CCACTTTGTAAAATACTTGT+TGG 0.347405 4_3:+56147250 Msa0649490:three_prime_UTR
CAAACAGAGGAGTATGTTAA+TGG 0.355057 4_3:+56146881 Msa0649490:CDS
AAGGTACCTTTGCAGCGATA+TGG 0.363913 4_3:-56144207 None:intergenic
TTTGAGTATGAGTGAGGGTT+TGG 0.369343 4_3:-56144138 None:intergenic
TTCTGCTAGAGTCCTCTTTG+AGG 0.400676 4_3:-56147057 None:intergenic
AGCTGGAATAGGAAGGAAAT+GGG 0.404312 4_3:+56145820 Msa0649490:CDS
GCATTCATTCGAGGGAATAA+TGG 0.408713 4_3:+56146929 Msa0649490:CDS
AGGAAGGAAATGGGGTATAG+TGG 0.416649 4_3:+56145829 Msa0649490:CDS
GGAACAGAGAAAAGTGGTTC+AGG 0.419839 4_3:+56144366 Msa0649490:five_prime_UTR
ATCACTTCATCTTCTACCAT+TGG 0.432853 4_3:+56145925 Msa0649490:CDS
GGACAGCTGAAGAACAAGTA+TGG 0.438644 4_3:+56146902 Msa0649490:CDS
AAGCTGGAATAGGAAGGAAA+TGG 0.439725 4_3:+56145819 Msa0649490:CDS
CTAAGAGTAAAAGCTGGAAT+AGG 0.449981 4_3:+56145809 Msa0649490:CDS
AGGTACCTTTGCAGCGATAT+GGG 0.461847 4_3:-56144206 None:intergenic
GTTTCAGACAAATAGGTAAC+CGG 0.473378 4_3:-56147157 None:intergenic
TCTATGGTTATACTATATCA+AGG 0.496579 4_3:+56147214 Msa0649490:three_prime_UTR
ATAGCTACGGAAAGGACCTC+TGG 0.523547 4_3:+56145657 Msa0649490:CDS
AGAGGAATCCAAATATATGT+TGG 0.528071 4_3:+56147091 Msa0649490:three_prime_UTR
GATTTCCTCAAATCCATTCG+TGG 0.535672 4_3:+56144408 Msa0649490:five_prime_UTR
GAAATGGGGTATAGTGGAGG+AGG 0.538918 4_3:+56145835 Msa0649490:CDS
AATCGAAAACGAGGCGCGAT+AGG 0.543071 4_3:-56144177 None:intergenic
GTATCCTAGCTTGTCTAGAT+GGG 0.549331 4_3:+56146837 Msa0649490:CDS
ATGGATTTGAGGAAATCAGC+TGG 0.557310 4_3:-56144402 None:intergenic
TAGAGCTACCACTCTGGTCA+AGG 0.560072 4_3:-56145952 None:intergenic
TATGGTGATGCATTCATTCG+AGG 0.561710 4_3:+56146920 Msa0649490:CDS
TATTGGCTAAGAGTAAAAGC+TGG 0.564294 4_3:+56145803 Msa0649490:CDS
CAAAGAGGACTCTAGCAGAA+GGG 0.565739 4_3:+56147060 Msa0649490:CDS
TTTAGATTGTAAAAGATGAG+TGG 0.566691 4_3:+56144345 Msa0649490:five_prime_UTR
GAGTAAAAGCTGGAATAGGA+AGG 0.573910 4_3:+56145813 Msa0649490:CDS
CGCGACCCATATCGCTGCAA+AGG 0.580989 4_3:+56144201 Msa0649490:five_prime_UTR
TGTACATCAGTACCTCAAAG+AGG 0.584586 4_3:+56147045 Msa0649490:CDS
TATACCCATCTAGACAAGCT+AGG 0.590930 4_3:-56146841 None:intergenic
ATGAGTGGAACAGAGAAAAG+TGG 0.591203 4_3:+56144360 Msa0649490:five_prime_UTR
TGGGTATATGAATATTGCAA+TGG 0.592472 4_3:+56146856 Msa0649490:CDS
CTGCAATCACAGAATAGCTA+CGG 0.593456 4_3:+56145644 Msa0649490:CDS
AGCAGAAGGGGCTTAAACAG+AGG 0.597578 4_3:+56147073 Msa0649490:exon
AAAGAGGACTCTAGCAGAAG+GGG 0.600102 4_3:+56147061 Msa0649490:CDS
TCAAAGAGGACTCTAGCAGA+AGG 0.600306 4_3:+56147059 Msa0649490:CDS
ACGAGGCGCGATAGGAGAGA+AGG 0.602822 4_3:-56144169 None:intergenic
TTGGATTTGGGAGATCATCA+GGG 0.612525 4_3:+56145873 Msa0649490:CDS
ATGGTGATGCATTCATTCGA+GGG 0.615726 4_3:+56146921 Msa0649490:CDS
AAGGAAATGGGGTATAGTGG+AGG 0.624087 4_3:+56145832 Msa0649490:CDS
GCTATTCTGTGATTGCAGCA+TGG 0.628730 4_3:-56145639 None:intergenic
AAAATAACAAATCATTTACT+CGG 0.630547 4_3:+56144106 Msa0649490:five_prime_UTR
ACCTTCTAGAGCTACCACTC+TGG 0.633752 4_3:-56145958 None:intergenic
GCTGGAATAGGAAGGAAATG+GGG 0.635456 4_3:+56145821 Msa0649490:CDS
CTCTGGTCAAGGAAATCCAA+TGG 0.639678 4_3:-56145941 None:intergenic
TATTGCAATGGAACAAACAG+AGG 0.640288 4_3:+56146868 Msa0649490:CDS
ATCACAGAATAGCTACGGAA+AGG 0.644039 4_3:+56145649 Msa0649490:CDS
AACTCTGGTGTTGACTATCG+AGG 0.657618 4_3:+56144553 Msa0649490:five_prime_UTR
GTATGAGTGAGGGTTTGGAT+CGG 0.671968 4_3:-56144133 None:intergenic
GTGATATTAGTGATCCTCCA+TGG 0.677268 4_3:-56145907 None:intergenic
GGGTCGCGAAATCGAAAACG+AGG 0.687157 4_3:-56144186 None:intergenic
TCAGGGTCTCTTGAACACCA+TGG 0.687916 4_3:+56145890 Msa0649490:CDS
TTGGATTTCCTTGACCAGAG+TGG 0.690818 4_3:+56145944 Msa0649490:CDS
CAATTACCATGACAAACGTG+AGG 0.705060 4_3:-56147187 None:intergenic
GGGTCTCTTGAACACCATGG+AGG 0.734511 4_3:+56145893 Msa0649490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTTTTTTTTTAAACT+CGG + chr4_3:56144726-56144745 Msa0649490:intron 10.0%
!! ACTCATTTATTTATTTATTT+CGG + chr4_3:56146274-56146293 Msa0649490:intron 10.0%
!! AAAATAACAAATCATTTACT+CGG + chr4_3:56144106-56144125 Msa0649490:five_prime_UTR 15.0%
!! AATTAACATAACAAAAATCA+CGG - chr4_3:56144307-56144326 None:intergenic 15.0%
!!! TTTGTTATGTTAATTTTTGA+AGG + chr4_3:56144312-56144331 Msa0649490:intron 15.0%
!!! TTAATTTTTGAAGGTTTTTT+AGG + chr4_3:56144321-56144340 Msa0649490:intron 15.0%
!!! TAATTTTTGAAGGTTTTTTA+GGG + chr4_3:56144322-56144341 Msa0649490:intron 15.0%
!!! CTCATTTTTTTTTTTAATTC+TGG + chr4_3:56145240-56145259 Msa0649490:intron 15.0%
!! TATTCATTTAGTTATTCAAT+AGG + chr4_3:56145455-56145474 Msa0649490:intron 15.0%
!! CATAATATAACAAATATAGA+TGG - chr4_3:56145992-56146011 None:intergenic 15.0%
!!! TTTTTTTTTTAAACTCGGTA+TGG + chr4_3:56144731-56144750 Msa0649490:intron 20.0%
!! GCTTAAATGATTAAACAATT+TGG + chr4_3:56146011-56146030 Msa0649490:intron 20.0%
!! TAACTTTAAATTAGACAGAA+AGG - chr4_3:56146242-56146261 None:intergenic 20.0%
!! GTAACTAATCTTATAGTTAT+TGG + chr4_3:56146484-56146503 Msa0649490:intron 20.0%
!! AATTCAAACCAACATATATT+TGG - chr4_3:56147102-56147121 None:intergenic 20.0%
!!! TTGTAACTTTTTGTATTATG+TGG + chr4_3:56147133-56147152 Msa0649490:three_prime_UTR 20.0%
!! TAAAAAAGTTTCAGACAAAT+AGG - chr4_3:56147167-56147186 None:intergenic 20.0%
! TTTAGATTGTAAAAGATGAG+TGG + chr4_3:56144345-56144364 Msa0649490:five_prime_UTR 25.0%
!!! TGGATTTTGAATTCAAGTTT+AGG + chr4_3:56144639-56144658 Msa0649490:intron 25.0%
! TTCACAATAAAAAACCACAA+GGG - chr4_3:56144922-56144941 None:intergenic 25.0%
! ATTCACAATAAAAAACCACA+AGG - chr4_3:56144923-56144942 None:intergenic 25.0%
! TTTGGTTAAATGAAAAGAGA+TGG + chr4_3:56145045-56145064 Msa0649490:intron 25.0%
!! AAAGAATAGAGGTTCTAATT+TGG + chr4_3:56145137-56145156 Msa0649490:intron 25.0%
! TTTACTTTCTCTGTCTAATT+TGG + chr4_3:56145199-56145218 Msa0649490:intron 25.0%
!! ATTTGGAGTTATTATGAGAT+TGG + chr4_3:56145154-56145173 Msa0649490:intron 25.0%
! TAAGAGACAAATAGTAAGAA+AGG + chr4_3:56145374-56145393 Msa0649490:intron 25.0%
! ATAGGAGTAGAAATTGAAAT+AGG + chr4_3:56145473-56145492 Msa0649490:intron 25.0%
! TAGTAAAAATTGAGTACACT+AGG + chr4_3:56145726-56145745 Msa0649490:intron 25.0%
! GAAAAAGTTTAGTTGGATTT+GGG + chr4_3:56145861-56145880 Msa0649490:CDS 25.0%
! GTACATCAATACAAATTGAA+TGG - chr4_3:56146037-56146056 None:intergenic 25.0%
!! AGATTAGTTACATAAGATAC+AGG - chr4_3:56146475-56146494 None:intergenic 25.0%
!!! ATAATGCATTGATTGTTTCT+TGG + chr4_3:56146675-56146694 Msa0649490:intron 25.0%
! AGTTTGGTTATATCACTTAT+TGG + chr4_3:56146720-56146739 Msa0649490:intron 25.0%
! GTTACATTATACTTCTATCT+AGG + chr4_3:56146774-56146793 Msa0649490:intron 25.0%
! TCTATGGTTATACTATATCA+AGG + chr4_3:56147214-56147233 Msa0649490:three_prime_UTR 25.0%
!!! AAATACTTGTTGGCATATTT+TGG + chr4_3:56147260-56147279 Msa0649490:three_prime_UTR 25.0%
!!! AAGTTTTTGAGTATGAGTGA+GGG - chr4_3:56144146-56144165 None:intergenic 30.0%
!!! TAAGTTTTTGAGTATGAGTG+AGG - chr4_3:56144147-56144166 None:intergenic 30.0%
ATAACAAAAATCACGGTGTA+AGG - chr4_3:56144300-56144319 None:intergenic 30.0%
TTCATCAATTTGCCATTCTA+TGG + chr4_3:56144594-56144613 Msa0649490:intron 30.0%
! ATTTGCCATTCTATGGTTTT+AGG + chr4_3:56144601-56144620 Msa0649490:intron 30.0%
TAATTTGGCATAGTAGGATT+CGG + chr4_3:56144839-56144858 Msa0649490:intron 30.0%
TCACAATAAAAAACCACAAG+GGG - chr4_3:56144921-56144940 None:intergenic 30.0%
!! TTTTGTTTGTCCAAAGCAAA+AGG - chr4_3:56144993-56145012 None:intergenic 30.0%
TCAGAAAAGGCTATAATGTT+TGG + chr4_3:56145027-56145046 Msa0649490:intron 30.0%
AAATGAAAAGAGATGGAATG+TGG + chr4_3:56145052-56145071 Msa0649490:intron 30.0%
TGAATCCATGAAAAGAATAG+AGG + chr4_3:56145126-56145145 Msa0649490:intron 30.0%
! TAGAACCTCTATTCTTTTCA+TGG - chr4_3:56145134-56145153 None:intergenic 30.0%
ATAGGAGGAAAGAAAAAGTT+AGG + chr4_3:56145491-56145510 Msa0649490:intron 30.0%
AAGAAAAAGTTAGGTTTGAC+TGG + chr4_3:56145500-56145519 Msa0649490:intron 30.0%
AGAAAAAGTTAGGTTTGACT+GGG + chr4_3:56145501-56145520 Msa0649490:intron 30.0%
TAAAAATTGAGTACACTAGG+AGG + chr4_3:56145729-56145748 Msa0649490:intron 30.0%
GTAACTGATCGTTTAGTTAT+TGG + chr4_3:56145786-56145805 Msa0649490:intron 30.0%
CGAAAAAGTTTAGTTGGATT+TGG + chr4_3:56145860-56145879 Msa0649490:CDS 30.0%
TTAGTGAACACAAGTTTCAT+TGG - chr4_3:56146082-56146101 None:intergenic 30.0%
! GGCTATAATGTTTGGTTTAA+TGG + chr4_3:56146110-56146129 Msa0649490:intron 30.0%
! TTTGGTTTAATGGAAAGAGA+TGG + chr4_3:56146120-56146139 Msa0649490:intron 30.0%
TAATGGAAAGAGATGGAATA+TGG + chr4_3:56146127-56146146 Msa0649490:intron 30.0%
AATGGAAAGAGATGGAATAT+GGG + chr4_3:56146128-56146147 Msa0649490:intron 30.0%
!! TCTCTTCAACTATTTCTACA+CGG - chr4_3:56146302-56146321 None:intergenic 30.0%
! TCTTTTCAATTCCTCAACAT+GGG - chr4_3:56146350-56146369 None:intergenic 30.0%
! TTCTTTTCAATTCCTCAACA+TGG - chr4_3:56146351-56146370 None:intergenic 30.0%
ACAAGAGACAAATAGTAAGA+AGG + chr4_3:56146403-56146422 Msa0649490:intron 30.0%
AGAGTAGAAGTTGAAATACA+AGG + chr4_3:56146510-56146529 Msa0649490:intron 30.0%
GAGTAGAAGTTGAAATACAA+GGG + chr4_3:56146511-56146530 Msa0649490:intron 30.0%
AAGTTGAAATACAAGGGAAA+GGG + chr4_3:56146517-56146536 Msa0649490:intron 30.0%
ATTAACCTCTGTTACTAGTT+TGG + chr4_3:56146704-56146723 Msa0649490:intron 30.0%
TATAACCAAACTAGTAACAG+AGG - chr4_3:56146712-56146731 None:intergenic 30.0%
! AAACTAGGCTCAATTGTTTT+TGG + chr4_3:56146802-56146821 Msa0649490:intron 30.0%
!!! TTGTTTTTGGTTAATCTTGC+AGG + chr4_3:56146815-56146834 Msa0649490:intron 30.0%
TGGGTATATGAATATTGCAA+TGG + chr4_3:56146856-56146875 Msa0649490:CDS 30.0%
AGAGGAATCCAAATATATGT+TGG + chr4_3:56147091-56147110 Msa0649490:three_prime_UTR 30.0%
! ACTTTTTGTATTATGTGGAC+CGG + chr4_3:56147138-56147157 Msa0649490:three_prime_UTR 30.0%
TCATGGTAATTGAGTTTCTA+TGG + chr4_3:56147198-56147217 Msa0649490:three_prime_UTR 30.0%
! ACAAGTATTTTACAAAGTGG+CGG - chr4_3:56147250-56147269 None:intergenic 30.0%
! CCAACAAGTATTTTACAAAG+TGG - chr4_3:56147253-56147272 None:intergenic 30.0%
CCACTTTGTAAAATACTTGT+TGG + chr4_3:56147250-56147269 Msa0649490:three_prime_UTR 30.0%
!!! CAGAATGTTTTAGCTTAGTT+TGG + chr4_3:56147283-56147302 Msa0649490:three_prime_UTR 30.0%
AGTGACCTAAAACCATAGAA+TGG - chr4_3:56144609-56144628 None:intergenic 35.0%
!!! TCTATGGTTTTAGGTCACTT+TGG + chr4_3:56144610-56144629 Msa0649490:intron 35.0%
!! TTAGGTCACTTTGGAATTTG+TGG + chr4_3:56144619-56144638 Msa0649490:intron 35.0%
! AAGTTTAGGTTCACATTCCT+AGG + chr4_3:56144653-56144672 Msa0649490:intron 35.0%
CCTACTATGCCAAATTATGT+GGG - chr4_3:56144836-56144855 None:intergenic 35.0%
TCCTACTATGCCAAATTATG+TGG - chr4_3:56144837-56144856 None:intergenic 35.0%
! TTCGGACAAGAGAATTTTAG+AGG + chr4_3:56144857-56144876 Msa0649490:intron 35.0%
GCACATCAACACTAATTGAA+TGG - chr4_3:56144961-56144980 None:intergenic 35.0%
!! TCAATTAGTGTTGATGTGCA+TGG + chr4_3:56144962-56144981 Msa0649490:intron 35.0%
! TGCTTTGGACAAACAAAACT+TGG + chr4_3:56144995-56145014 Msa0649490:intron 35.0%
! GCTTTGGACAAACAAAACTT+GGG + chr4_3:56144996-56145015 Msa0649490:intron 35.0%
TTGGGTTCACTAATCAGAAA+AGG + chr4_3:56145014-56145033 Msa0649490:intron 35.0%
! CTTTTCAACTGCTAAAAGCA+GGG - chr4_3:56145316-56145335 None:intergenic 35.0%
! TCTTTTCAACTGCTAAAAGC+AGG - chr4_3:56145317-56145336 None:intergenic 35.0%
! TAGTAAGAAAGGAGTACACT+AGG + chr4_3:56145385-56145404 Msa0649490:intron 35.0%
TACACTAGGAGAAATAAGCA+TGG + chr4_3:56145399-56145418 Msa0649490:intron 35.0%
GGAGTAGAAATTGAAATAGG+AGG + chr4_3:56145476-56145495 Msa0649490:intron 35.0%
GAAAAAGTTAGGTTTGACTG+GGG + chr4_3:56145502-56145521 Msa0649490:intron 35.0%
TACCATTTCATCTTCAACCA+TGG + chr4_3:56145565-56145584 Msa0649490:intron 35.0%
ACCATTTCATCTTCAACCAT+GGG + chr4_3:56145566-56145585 Msa0649490:intron 35.0%
ACCAGAGTAGTATCACATAT+TGG + chr4_3:56145598-56145617 Msa0649490:intron 35.0%
ACCAATATGTGATACTACTC+TGG - chr4_3:56145602-56145621 None:intergenic 35.0%
GTAGTATCACATATTGGTGT+AGG + chr4_3:56145604-56145623 Msa0649490:intron 35.0%
! TATTGGCTAAGAGTAAAAGC+TGG + chr4_3:56145803-56145822 Msa0649490:CDS 35.0%
CTAAGAGTAAAAGCTGGAAT+AGG + chr4_3:56145809-56145828 Msa0649490:CDS 35.0%
GAGGAACGAAAAAGTTTAGT+TGG + chr4_3:56145854-56145873 Msa0649490:CDS 35.0%
ATCACTTCATCTTCTACCAT+TGG + chr4_3:56145925-56145944 Msa0649490:CDS 35.0%
!! ACAAGTTGCACTTTTTGCTT+TGG + chr4_3:56146055-56146074 Msa0649490:intron 35.0%
!! CAAGTTGCACTTTTTGCTTT+GGG + chr4_3:56146056-56146075 Msa0649490:intron 35.0%
! TTTTCAAATACCCCATGTTG+AGG + chr4_3:56146336-56146355 Msa0649490:intron 35.0%
! CTTTTCAATTCCTCAACATG+GGG - chr4_3:56146349-56146368 None:intergenic 35.0%
GAAGTTGAAATACAAGGGAA+AGG + chr4_3:56146516-56146535 Msa0649490:intron 35.0%
ATCACTTCATCTAACACCAT+TGG + chr4_3:56146623-56146642 Msa0649490:intron 35.0%
GGTTATATCACTTATTGGTG+TGG + chr4_3:56146725-56146744 Msa0649490:intron 35.0%
TATCACTTATTGGTGTGGAT+TGG + chr4_3:56146730-56146749 Msa0649490:intron 35.0%
TCTATCTAGGTACACAAACT+AGG + chr4_3:56146787-56146806 Msa0649490:intron 35.0%
TATTGCAATGGAACAAACAG+AGG + chr4_3:56146868-56146887 Msa0649490:CDS 35.0%
! CAAACAGAGGAGTATGTTAA+TGG + chr4_3:56146881-56146900 Msa0649490:CDS 35.0%
GTTTCAGACAAATAGGTAAC+CGG - chr4_3:56147160-56147179 None:intergenic 35.0%
! TTTTTACCTCACGTTTGTCA+TGG + chr4_3:56147181-56147200 Msa0649490:three_prime_UTR 35.0%
TTTGAGTATGAGTGAGGGTT+TGG - chr4_3:56144141-56144160 None:intergenic 40.0%
ATGAGTGGAACAGAGAAAAG+TGG + chr4_3:56144360-56144379 Msa0649490:five_prime_UTR 40.0%
ATGGATTTGAGGAAATCAGC+TGG - chr4_3:56144405-56144424 None:intergenic 40.0%
GATTTCCTCAAATCCATTCG+TGG + chr4_3:56144408-56144427 Msa0649490:five_prime_UTR 40.0%
TTTAAACTCGGTATGGTCCA+AGG + chr4_3:56144738-56144757 Msa0649490:intron 40.0%
!! ATGGACTAGCCCACATAATT+TGG + chr4_3:56144824-56144843 Msa0649490:intron 40.0%
CCCACATAATTTGGCATAGT+AGG + chr4_3:56144833-56144852 Msa0649490:intron 40.0%
!! TTTTAGAGGAGCACACTCTA+AGG + chr4_3:56144871-56144890 Msa0649490:intron 40.0%
! CATGGTTACACCTTTTGCTT+TGG + chr4_3:56144980-56144999 Msa0649490:intron 40.0%
TGAAAAGAGATGGAATGTGG+TGG + chr4_3:56145055-56145074 Msa0649490:intron 40.0%
GAGAAATAAGCATGGAACAG+AGG + chr4_3:56145407-56145426 Msa0649490:intron 40.0%
TCCCATGGTTGAAGATGAAA+TGG - chr4_3:56145570-56145589 None:intergenic 40.0%
ATGTGATACTACTCTGGTCA+AGG - chr4_3:56145596-56145615 None:intergenic 40.0%
CTGCAATCACAGAATAGCTA+CGG + chr4_3:56145644-56145663 Msa0649490:CDS 40.0%
ATCACAGAATAGCTACGGAA+AGG + chr4_3:56145649-56145668 Msa0649490:CDS 40.0%
AGCTAAAAATGTTGCACCAG+AGG - chr4_3:56145676-56145695 None:intergenic 40.0%
ATTGAGTACACTAGGAGGAA+TGG + chr4_3:56145734-56145753 Msa0649490:intron 40.0%
GAGTAAAAGCTGGAATAGGA+AGG + chr4_3:56145813-56145832 Msa0649490:CDS 40.0%
AAGCTGGAATAGGAAGGAAA+TGG + chr4_3:56145819-56145838 Msa0649490:CDS 40.0%
AGCTGGAATAGGAAGGAAAT+GGG + chr4_3:56145820-56145839 Msa0649490:CDS 40.0%
TTGGATTTGGGAGATCATCA+GGG + chr4_3:56145873-56145892 Msa0649490:CDS 40.0%
GTGATATTAGTGATCCTCCA+TGG - chr4_3:56145910-56145929 None:intergenic 40.0%
TTGTGTTCACTAACCAGCAA+TGG + chr4_3:56146089-56146108 Msa0649490:intron 40.0%
CCAAACATTATAGCCATTGC+TGG - chr4_3:56146105-56146124 None:intergenic 40.0%
CCAGCAATGGCTATAATGTT+TGG + chr4_3:56146102-56146121 Msa0649490:intron 40.0%
TAAGAAGGTAGTAGTACGCT+AGG + chr4_3:56146418-56146437 Msa0649490:intron 40.0%
AGTAGAGCTTGGAAGAAACT+TGG + chr4_3:56146545-56146564 Msa0649490:intron 40.0%
GTAGAGCTTGGAAGAAACTT+GGG + chr4_3:56146546-56146565 Msa0649490:intron 40.0%
!! GAAGAAACTTGGGTTGGATT+GGG + chr4_3:56146556-56146575 Msa0649490:intron 40.0%
!! AAGAAACTTGGGTTGGATTG+GGG + chr4_3:56146557-56146576 Msa0649490:intron 40.0%
TTATTCCAGAGCTACCACTT+TGG - chr4_3:56146659-56146678 None:intergenic 40.0%
! GTATCCTAGCTTGTCTAGAT+GGG + chr4_3:56146837-56146856 Msa0649490:CDS 40.0%
TATACCCATCTAGACAAGCT+AGG - chr4_3:56146844-56146863 None:intergenic 40.0%
! TATGGTGATGCATTCATTCG+AGG + chr4_3:56146920-56146939 Msa0649490:CDS 40.0%
! ATGGTGATGCATTCATTCGA+GGG + chr4_3:56146921-56146940 Msa0649490:CDS 40.0%
GCATTCATTCGAGGGAATAA+TGG + chr4_3:56146929-56146948 Msa0649490:CDS 40.0%
TGTACATCAGTACCTCAAAG+AGG + chr4_3:56147045-56147064 Msa0649490:CDS 40.0%
CAATTACCATGACAAACGTG+AGG - chr4_3:56147190-56147209 None:intergenic 40.0%
GTATGAGTGAGGGTTTGGAT+CGG - chr4_3:56144136-56144155 None:intergenic 45.0%
AGGTACCTTTGCAGCGATAT+GGG - chr4_3:56144209-56144228 None:intergenic 45.0%
! AAGGTACCTTTGCAGCGATA+TGG - chr4_3:56144210-56144229 None:intergenic 45.0%
GGAACAGAGAAAAGTGGTTC+AGG + chr4_3:56144366-56144385 Msa0649490:five_prime_UTR 45.0%
! GAGGAAATCAGCTGGAGTTT+TGG - chr4_3:56144397-56144416 None:intergenic 45.0%
! GTCTACCACGAATGGATTTG+AGG - chr4_3:56144416-56144435 None:intergenic 45.0%
GTGGTTGTTAAGCTCAACTC+TGG + chr4_3:56144538-56144557 Msa0649490:five_prime_UTR 45.0%
!! AACTCTGGTGTTGACTATCG+AGG + chr4_3:56144553-56144572 Msa0649490:five_prime_UTR 45.0%
ACATTCCTAGGTCACAGTTG+TGG + chr4_3:56144665-56144684 Msa0649490:intron 45.0%
TACTACCACAACTGTGACCT+AGG - chr4_3:56144673-56144692 None:intergenic 45.0%
! CTTTAATTTCCCCTGGACAG+TGG - chr4_3:56144787-56144806 None:intergenic 45.0%
!! GCTTTGGCTTTAATTTCCCC+TGG - chr4_3:56144794-56144813 None:intergenic 45.0%
AGCCAAAGCTAAGCTCTGTA+TGG + chr4_3:56144805-56144824 Msa0649490:intron 45.0%
GTCCATACAGAGCTTAGCTT+TGG - chr4_3:56144810-56144829 None:intergenic 45.0%
ATGGTATGAGTCATCGTCCA+AGG - chr4_3:56145551-56145570 None:intergenic 45.0%
GCTATTCTGTGATTGCAGCA+TGG - chr4_3:56145642-56145661 None:intergenic 45.0%
GCTGGAATAGGAAGGAAATG+GGG + chr4_3:56145821-56145840 Msa0649490:CDS 45.0%
AGGAAGGAAATGGGGTATAG+TGG + chr4_3:56145829-56145848 Msa0649490:CDS 45.0%
AAGGAAATGGGGTATAGTGG+AGG + chr4_3:56145832-56145851 Msa0649490:CDS 45.0%
GTTGGATTTGGGAGATCATC+AGG + chr4_3:56145872-56145891 Msa0649490:CDS 45.0%
CTCTGGTCAAGGAAATCCAA+TGG - chr4_3:56145944-56145963 None:intergenic 45.0%
TTGGATTTCCTTGACCAGAG+TGG + chr4_3:56145944-56145963 Msa0649490:CDS 45.0%
AAAGGGTAGACAGTAGAGCT+TGG + chr4_3:56146534-56146553 Msa0649490:intron 45.0%
AGCTTGGAAGAAACTTGGGT+TGG + chr4_3:56146550-56146569 Msa0649490:intron 45.0%
!! GGAAGAAACTTGGGTTGGAT+TGG + chr4_3:56146555-56146574 Msa0649490:intron 45.0%
!! TTGGATTGGGGAGAGTATCA+GGG + chr4_3:56146569-56146588 Msa0649490:intron 45.0%
CTTTGGTCAAGGAGATCCAA+TGG - chr4_3:56146642-56146661 None:intergenic 45.0%
TTGGATCTCCTTGACCAAAG+TGG + chr4_3:56146642-56146661 Msa0649490:intron 45.0%
! GGTATCCTAGCTTGTCTAGA+TGG + chr4_3:56146836-56146855 Msa0649490:intron 45.0%
GGACAGCTGAAGAACAAGTA+TGG + chr4_3:56146902-56146921 Msa0649490:CDS 45.0%
TTCTGCTAGAGTCCTCTTTG+AGG - chr4_3:56147060-56147079 None:intergenic 45.0%
TCAAAGAGGACTCTAGCAGA+AGG + chr4_3:56147059-56147078 Msa0649490:CDS 45.0%
CAAAGAGGACTCTAGCAGAA+GGG + chr4_3:56147060-56147079 Msa0649490:CDS 45.0%
AAAGAGGACTCTAGCAGAAG+GGG + chr4_3:56147061-56147080 Msa0649490:CDS 45.0%
AATCGAAAACGAGGCGCGAT+AGG - chr4_3:56144180-56144199 None:intergenic 50.0%
AGCGAGAAGAGAAGACGAGA+AGG - chr4_3:56144229-56144248 None:intergenic 50.0%
GAATTGGTCCCCGGATAAGT+CGG - chr4_3:56144765-56144784 None:intergenic 50.0%
TTTCCCCTGGACAGTGGAAT+TGG - chr4_3:56144781-56144800 None:intergenic 50.0%
GGTTCCTAGCCTACACAATC+AGG + chr4_3:56144892-56144911 Msa0649490:intron 50.0%
GTTGCCTGATTGTGTAGGCT+AGG - chr4_3:56144899-56144918 None:intergenic 50.0%
AAGGGGTTGCCTGATTGTGT+AGG - chr4_3:56144904-56144923 None:intergenic 50.0%
AGTTAGGTTTGACTGGGGAG+AGG + chr4_3:56145507-56145526 Msa0649490:intron 50.0%
TTTGACTGGGGAGAGGATCA+GGG + chr4_3:56145514-56145533 Msa0649490:intron 50.0%
TCAGGGTCTCTCAAACACCT+TGG + chr4_3:56145531-56145550 Msa0649490:intron 50.0%
ATAGCTACGGAAAGGACCTC+TGG + chr4_3:56145657-56145676 Msa0649490:CDS 50.0%
CACTAGGAGGAATGGCACAT+AGG + chr4_3:56145742-56145761 Msa0649490:intron 50.0%
! GAAATGGGGTATAGTGGAGG+AGG + chr4_3:56145835-56145854 Msa0649490:CDS 50.0%
TCAGGGTCTCTTGAACACCA+TGG + chr4_3:56145890-56145909 Msa0649490:CDS 50.0%
TAGAGCTACCACTCTGGTCA+AGG - chr4_3:56145955-56145974 None:intergenic 50.0%
!! ACCAGAGTGGTAGCTCTAGA+AGG + chr4_3:56145957-56145976 Msa0649490:intron 50.0%
!! ACCTTCTAGAGCTACCACTC+TGG - chr4_3:56145961-56145980 None:intergenic 50.0%
!! GTTGGATTGGGGAGAGTATC+AGG + chr4_3:56146568-56146587 Msa0649490:intron 50.0%
TCCCTCTAACACCTTGGAGA+GGG + chr4_3:56146592-56146611 Msa0649490:intron 50.0%
! ACCCTCTCCAAGGTGTTAGA+GGG - chr4_3:56146596-56146615 None:intergenic 50.0%
GATAAGAGTCACCCTCTCCA+AGG - chr4_3:56146606-56146625 None:intergenic 50.0%
CAGAGCTACCACTTTGGTCA+AGG - chr4_3:56146653-56146672 None:intergenic 50.0%
CTTGACCAAAGTGGTAGCTC+TGG + chr4_3:56146651-56146670 Msa0649490:intron 50.0%
AGCAGAAGGGGCTTAAACAG+AGG + chr4_3:56147073-56147092 Msa0649490:exon 50.0%
GGGTCGCGAAATCGAAAACG+AGG - chr4_3:56144189-56144208 None:intergenic 55.0%
! GGTCCAAGGACCGACTTATC+CGG + chr4_3:56144752-56144771 Msa0649490:intron 55.0%
! GTCCAAGGACCGACTTATCC+GGG + chr4_3:56144753-56144772 Msa0649490:intron 55.0%
! TCCAAGGACCGACTTATCCG+GGG + chr4_3:56144754-56144773 Msa0649490:intron 55.0%
TGGACAGTGGAATTGGTCCC+CGG - chr4_3:56144774-56144793 None:intergenic 55.0%
GGGACCAATTCCACTGTCCA+GGG + chr4_3:56144774-56144793 Msa0649490:intron 55.0%
GGACCAATTCCACTGTCCAG+GGG + chr4_3:56144775-56144794 Msa0649490:intron 55.0%
CACAATCAGGCAACCCCTTG+TGG + chr4_3:56144905-56144924 Msa0649490:intron 55.0%
GTTTGACTGGGGAGAGGATC+AGG + chr4_3:56145513-56145532 Msa0649490:intron 55.0%
CTCTGGTCAAGGAGATCCCA+TGG - chr4_3:56145585-56145604 None:intergenic 55.0%
GGGTCTCTTGAACACCATGG+AGG + chr4_3:56145893-56145912 Msa0649490:CDS 55.0%
TCAGGGTCCCTCTAACACCT+TGG + chr4_3:56146586-56146605 Msa0649490:intron 55.0%
GTCCCTCTAACACCTTGGAG+AGG + chr4_3:56146591-56146610 Msa0649490:intron 55.0%
! CACCCTCTCCAAGGTGTTAG+AGG - chr4_3:56146597-56146616 None:intergenic 55.0%
ACGAGGCGCGATAGGAGAGA+AGG - chr4_3:56144172-56144191 None:intergenic 60.0%
CGCGACCCATATCGCTGCAA+AGG + chr4_3:56144201-56144220 Msa0649490:five_prime_UTR 60.0%
TCCCCGGATAAGTCGGTCCT+TGG - chr4_3:56144758-56144777 None:intergenic 60.0%
GGGGACCAATTCCACTGTCC+AGG + chr4_3:56144773-56144792 Msa0649490:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 56144092 56147395 56144092 ID=Msa0649490;Name=Msa0649490
chr4_3 mRNA 56144092 56147395 56144092 ID=Msa0649490-mRNA-1;Parent=Msa0649490;Name=Msa0649490-mRNA-1;_AED=0.14;_eAED=0.14;_QI=275|0.5|0.71|0.71|0.5|0.42|7|307|124
chr4_3 exon 56144092 56144222 56144092 ID=Msa0649490-mRNA-1:exon:14514;Parent=Msa0649490-mRNA-1
chr4_3 exon 56144334 56144435 56144334 ID=Msa0649490-mRNA-1:exon:14515;Parent=Msa0649490-mRNA-1
chr4_3 exon 56144536 56144574 56144536 ID=Msa0649490-mRNA-1:exon:14516;Parent=Msa0649490-mRNA-1
chr4_3 exon 56145626 56145678 56145626 ID=Msa0649490-mRNA-1:exon:14517;Parent=Msa0649490-mRNA-1
chr4_3 exon 56145802 56145965 56145802 ID=Msa0649490-mRNA-1:exon:14518;Parent=Msa0649490-mRNA-1
chr4_3 exon 56146837 56146950 56146837 ID=Msa0649490-mRNA-1:exon:14519;Parent=Msa0649490-mRNA-1
chr4_3 exon 56147042 56147395 56147042 ID=Msa0649490-mRNA-1:exon:14520;Parent=Msa0649490-mRNA-1
chr4_3 five_prime_UTR 56144092 56144222 56144092 ID=Msa0649490-mRNA-1:five_prime_utr;Parent=Msa0649490-mRNA-1
chr4_3 five_prime_UTR 56144334 56144435 56144334 ID=Msa0649490-mRNA-1:five_prime_utr;Parent=Msa0649490-mRNA-1
chr4_3 five_prime_UTR 56144536 56144574 56144536 ID=Msa0649490-mRNA-1:five_prime_utr;Parent=Msa0649490-mRNA-1
chr4_3 five_prime_UTR 56145626 56145628 56145626 ID=Msa0649490-mRNA-1:five_prime_utr;Parent=Msa0649490-mRNA-1
chr4_3 CDS 56145629 56145678 56145629 ID=Msa0649490-mRNA-1:cds;Parent=Msa0649490-mRNA-1
chr4_3 CDS 56145802 56145965 56145802 ID=Msa0649490-mRNA-1:cds;Parent=Msa0649490-mRNA-1
chr4_3 CDS 56146837 56146950 56146837 ID=Msa0649490-mRNA-1:cds;Parent=Msa0649490-mRNA-1
chr4_3 CDS 56147042 56147088 56147042 ID=Msa0649490-mRNA-1:cds;Parent=Msa0649490-mRNA-1
chr4_3 three_prime_UTR 56147089 56147395 56147089 ID=Msa0649490-mRNA-1:three_prime_utr;Parent=Msa0649490-mRNA-1
Gene Sequence

>Msa0649490

ATGTTGTTAACCATGCTGCAATCACAGAATAGCTACGGAAAGGACCTCTGTTATTGGCTAAGAGTAAAAGCTGGAATAGGAAGGAAATGGGGTATAGTGGAGGAGGAACGAAAAAGTTTAGTTGGATTTGGGAGATCATCAGGGTCTCTTGAACACCATGGAGGATCACTAATATCACTTCATCTTCTACCATTGGATTTCCTTGACCAGAGTGGTATCCTAGCTTGTCTAGATGGGTATATGAATATTGCAATGGAACAAACAGAGGAGTATGTTAATGGACAGCTGAAGAACAAGTATGGTGATGCATTCATTCGAGGGAATAATGTTTTGTACATCAGTACCTCAAAGAGGACTCTAGCAGAAGGGGCTTAA

Protein sequence

>Msa0649490

MLLTMLQSQNSYGKDLCYWLRVKAGIGRKWGIVEEERKSLVGFGRSSGSLEHHGGSLISLHLLPLDFLDQSGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEGA*