AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1305660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1305660 MtrunA17_Chr2g0293831 87.527 465 26 4 1 443 664 1118 0.0 777
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1305660 AT5G49930.1 50.756 463 148 9 1 443 660 1062 3.47e-131 405

Find 119 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCCTCTTATTATGGGTTT+TGG 0.226117 8_3:-69169795 None:intergenic
TTGTCCGAGGCTTCATTTAC+AGG 0.231565 8_3:+69168645 None:intergenic
GAAGATGATATTAATGAAAT+AGG 0.260656 8_3:-69167667 Msa1305660:CDS
CATTGCCACTCTATCTTCTA+AGG 0.268341 8_3:+69167693 None:intergenic
AATGATGTGGATTACTTAAC+AGG 0.288826 8_3:-69167622 Msa1305660:CDS
GGTGTGTATTTGTAGTCTTC+TGG 0.294799 8_3:-69168696 Msa1305660:intron
AATGTCTCTTCCTTCTTGAT+TGG 0.307397 8_3:+69168669 None:intergenic
GAATCAAATTGTTCTTCAAC+AGG 0.316441 8_3:+69169654 None:intergenic
GAATTAGTTGCTTCAATTGT+TGG 0.317333 8_3:-69167104 Msa1305660:CDS
ATCATCTGAAGCTGTAGTTT+TGG 0.325584 8_3:+69169494 None:intergenic
CTTCTGACATGTGGCTGAAT+AGG 0.329806 8_3:+69167171 None:intergenic
TAAATAACTGGTTAGGCAAT+AGG 0.333438 8_3:-69166790 Msa1305660:three_prime_UTR
GGATGTGCTTCTCCATGTTT+CGG 0.338953 8_3:+69169199 None:intergenic
AGGCAACGGCTGAAATTATA+TGG 0.339574 8_3:-69166825 Msa1305660:three_prime_UTR
ACAATTGAAGCAACTAATTC+AGG 0.347362 8_3:+69167107 None:intergenic
TCCCTTACTGCAGGTTTGCT+TGG 0.348886 8_3:+69169267 None:intergenic
GAGCATCCGAATGTCATTAT+TGG 0.352420 8_3:-69169006 Msa1305660:CDS
CTTGATCGAGCTCTGGGACT+TGG 0.355944 8_3:-69169366 Msa1305660:CDS
CGCTTGGATGAGAGTTCATT+GGG 0.358618 8_3:-69169762 Msa1305660:CDS
TGCTCCTTTCTTCCTCGTCT+TGG 0.361938 8_3:+69169024 None:intergenic
TCTTGACTAACTCCCTTGTT+TGG 0.362894 8_3:+69167010 None:intergenic
AAGTTTGAAGCACTCATGTT+AGG 0.368327 8_3:+69167718 None:intergenic
CACCCAACAGAGATCCATTA+GGG 0.382624 8_3:+69166864 None:intergenic
TCCTTTCCATGTCCATCGCT+TGG 0.389389 8_3:+69169178 None:intergenic
GGGAAAACTTAAGAAGATAA+AGG 0.392544 8_3:-69169060 Msa1305660:CDS
TTTCCCTTTCTTCACAGGTC+CGG 0.392703 8_3:+69167504 None:intergenic
AGACACCTCTCAAACTAGTT+TGG 0.393203 8_3:-69169529 Msa1305660:CDS
GTAAATGAAGCCTCGGACAA+AGG 0.402536 8_3:-69168642 Msa1305660:CDS
GGTTTCGTTTATAGATCAAT+TGG 0.403541 8_3:+69166742 None:intergenic
GACCCTTTGTGGGATTTACT+TGG 0.406212 8_3:-69166989 Msa1305660:three_prime_UTR
AAATAACATCGATAAATAAC+TGG 0.412916 8_3:-69166802 Msa1305660:three_prime_UTR
GGAAATTCTTGATCGAGCTC+TGG 0.416560 8_3:-69169373 Msa1305660:CDS
TCGCTTGGATGAGAGTTCAT+TGG 0.417173 8_3:-69169763 Msa1305660:CDS
TCATTTATCTCGGGATTGTA+AGG 0.425596 8_3:-69167794 Msa1305660:CDS
TTCCCTTTCTTCACAGGTCC+GGG 0.431258 8_3:+69167505 None:intergenic
TAAGATTGAACTGCATTGTA+TGG 0.431663 8_3:+69167550 None:intergenic
TGCATTGTATGGACCACATA+CGG 0.434326 8_3:+69167561 None:intergenic
TCACCCAACAGAGATCCATT+AGG 0.440729 8_3:+69166863 None:intergenic
AAATATGTTACAAGTGTAAG+AGG 0.444029 8_3:-69167822 Msa1305660:CDS
GAGTTAGTCAAGACCCTTTG+TGG 0.444059 8_3:-69167000 Msa1305660:exon
TGACTATGCAACAGATCATT+TGG 0.448313 8_3:+69167766 None:intergenic
GATGGAGGAGAGGAGGAAAC+TGG 0.449027 8_3:-69169678 Msa1305660:CDS
TTAAATGAAAGGAGGGTAAG+AGG 0.451366 8_3:-69169732 Msa1305660:CDS
ACCCCTAATGGATCTCTGTT+GGG 0.453602 8_3:-69166866 Msa1305660:three_prime_UTR
TACCCCTAATGGATCTCTGT+TGG 0.466087 8_3:-69166867 Msa1305660:three_prime_UTR
GGTGAGTACTACTGTTAGAT+AGG 0.470613 8_3:-69166845 Msa1305660:three_prime_UTR
ACATCGATAAATAACTGGTT+AGG 0.472181 8_3:-69166797 Msa1305660:three_prime_UTR
AAAATCAGCCGTGGACAAAA+GGG 0.472781 8_3:-69169080 Msa1305660:CDS
TTATATGCTGTTCCCGTATG+TGG 0.477989 8_3:-69167574 Msa1305660:CDS
ATCTCTACAGTGTTGAAACT+TGG 0.478000 8_3:+69166904 None:intergenic
AGACCTTTCCCTTTCTTCAC+AGG 0.479531 8_3:+69167499 None:intergenic
TAAATGAAGCCTCGGACAAA+GGG 0.482878 8_3:-69168641 Msa1305660:CDS
CCTTTGTGGGATTTACTTGG+TGG 0.483871 8_3:-69166986 Msa1305660:three_prime_UTR
TATCGAGTGAAGATAATTCC+CGG 0.488121 8_3:-69167523 Msa1305660:CDS
AACCAAGCAAACCTGCAGTA+AGG 0.490136 8_3:-69169269 Msa1305660:CDS
AGAGGGTAGGTCATTTATCT+CGG 0.496475 8_3:-69167804 Msa1305660:CDS
TTCCCGGACCTGTGAAGAAA+GGG 0.497216 8_3:-69167507 Msa1305660:CDS
TACGGTTTATCCCTTACTGC+AGG 0.500983 8_3:+69169258 None:intergenic
AAGAGAATGTCAGTTGGGAG+TGG 0.502462 8_3:+69167595 None:intergenic
CATATAAGAGAATGTCAGTT+GGG 0.505929 8_3:+69167590 None:intergenic
TGGAGAAACTGCTGCAGACT+CGG 0.506095 8_3:-69169607 Msa1305660:CDS
GAAATTCTTGATCGAGCTCT+GGG 0.511076 8_3:-69169372 Msa1305660:CDS
TGGGATCACATTTAAATGAA+AGG 0.511113 8_3:-69169743 Msa1305660:CDS
ATTCCCGGACCTGTGAAGAA+AGG 0.512559 8_3:-69167508 Msa1305660:CDS
CTGACCAAGACGAGGAAGAA+AGG 0.517332 8_3:-69169028 Msa1305660:CDS
GAGGGTAGGTCATTTATCTC+GGG 0.519641 8_3:-69167803 Msa1305660:CDS
AAGCAAGTCTTCTGAGGGTA+TGG 0.520395 8_3:+69169554 None:intergenic
AACTAATTCAGGATCAGTAC+AGG 0.525075 8_3:+69167118 None:intergenic
TCACAGCCAATAATGACATT+CGG 0.528851 8_3:+69169000 None:intergenic
CTTAGAAGATAGAGTGGCAA+TGG 0.530917 8_3:-69167692 Msa1305660:CDS
AGTTAGTCAAGACCCTTTGT+GGG 0.536001 8_3:-69166999 Msa1305660:exon
AAGGAGGGTAAGAGGAGAGG+AGG 0.543851 8_3:-69169724 Msa1305660:CDS
AATGTGAAGATAACTGCAGC+TGG 0.545052 8_3:-69167080 Msa1305660:CDS
TGAAAGGAGGGTAAGAGGAG+AGG 0.547133 8_3:-69169727 Msa1305660:CDS
CAGAGATCCATTAGGGGTAA+CGG 0.551145 8_3:+69166871 None:intergenic
GTCTGCAAGCAAGTCTTCTG+AGG 0.553373 8_3:+69169548 None:intergenic
ACCAAGCAAACCTGCAGTAA+GGG 0.553730 8_3:-69169268 Msa1305660:CDS
GCATTGTATGGACCACATAC+GGG 0.556140 8_3:+69167562 None:intergenic
ATCTGTCTCCCCTCAGCTTG+AGG 0.557479 8_3:-69169394 Msa1305660:CDS
CACCAAGTAAATCCCACAAA+GGG 0.560846 8_3:+69166987 None:intergenic
AAACTGCTGCAGACTCGGAA+AGG 0.566261 8_3:-69169602 Msa1305660:CDS
ATCACATTTAAATGAAAGGA+GGG 0.567523 8_3:-69169739 Msa1305660:CDS
TCTCATCCAAGCGAAATAGC+AGG 0.568191 8_3:+69169772 None:intergenic
TTCTGGAAAACCAATCAAGA+AGG 0.569329 8_3:-69168679 Msa1305660:CDS
CTGAGGGGAGACAGATGCTA+AGG 0.571094 8_3:+69169401 None:intergenic
GCACATCCAAGCGATGGACA+TGG 0.577129 8_3:-69169184 Msa1305660:CDS
ATAGATGATAATGTTGCTGA+TGG 0.578022 8_3:-69169696 Msa1305660:CDS
CTACAGTGTTGAAACTTGGA+AGG 0.581217 8_3:+69166908 None:intergenic
GATCACATTTAAATGAAAGG+AGG 0.583189 8_3:-69169740 Msa1305660:CDS
TGCAGCCAAACTAGTTTGAG+AGG 0.584392 8_3:+69169524 None:intergenic
TGTTGCTGATGGAGGAGAGG+AGG 0.584835 8_3:-69169685 Msa1305660:CDS
GCTTAAAATGAACCGAAACA+TGG 0.585661 8_3:-69169211 Msa1305660:CDS
GATGATAATGTTGCTGATGG+AGG 0.586492 8_3:-69169693 Msa1305660:CDS
TCCAAGCGATGGACATGGAA+AGG 0.586944 8_3:-69169179 Msa1305660:CDS
GAGAAATTATCTGACTTCAG+TGG 0.596681 8_3:-69169429 Msa1305660:CDS
TGAAAATTTGAAGACGGTGG+TGG 0.598822 8_3:-69169107 Msa1305660:intron
CAAGAATTTCCTCAAGCTGA+GGG 0.599666 8_3:+69169385 None:intergenic
CTTGTCCTTAGAAGATAGAG+TGG 0.599708 8_3:-69167698 Msa1305660:CDS
GCTGCAGACTCGGAAAGGAA+TGG 0.600310 8_3:-69169597 Msa1305660:CDS
TACTACTGTTAGATAGGCAA+CGG 0.601548 8_3:-69166839 Msa1305660:three_prime_UTR
GCATATAAGAGAATGTCAGT+TGG 0.601563 8_3:+69167589 None:intergenic
GATTTGTTGCTTCTGACATG+TGG 0.602826 8_3:+69167162 None:intergenic
ATTACCTGTAAATGAAGCCT+CGG 0.607254 8_3:-69168649 Msa1305660:CDS
TCAAGAATTTCCTCAAGCTG+AGG 0.610198 8_3:+69169384 None:intergenic
TCTGAGAAGAATGTTGCTGA+TGG 0.611457 8_3:-69169627 Msa1305660:CDS
GGAGAAGCACATCCAAGCGA+TGG 0.611586 8_3:-69169190 Msa1305660:CDS
TGTTACAAGTGTAAGAGGGT+AGG 0.612164 8_3:-69167817 Msa1305660:CDS
AGAAGCAACAAATCGTGAGA+AGG 0.613858 8_3:-69167153 Msa1305660:CDS
GGACCTGTGAAGAAAGGGAA+AGG 0.618912 8_3:-69167502 Msa1305660:intron
CCACCAAGTAAATCCCACAA+AGG 0.622139 8_3:+69166986 None:intergenic
AATATGTTACAAGTGTAAGA+GGG 0.635432 8_3:-69167821 Msa1305660:CDS
TCTGCAAGCAAGTCTTCTGA+GGG 0.651636 8_3:+69169549 None:intergenic
TAATGTTGCTGATGGAGGAG+AGG 0.653586 8_3:-69169688 Msa1305660:CDS
GAAGTATGCTGACCAAGACG+AGG 0.656394 8_3:-69169036 Msa1305660:CDS
ATGATGTGGATTACTTAACA+GGG 0.669233 8_3:-69167621 Msa1305660:CDS
AAAAGAGCAGTGCCAAACAA+GGG 0.672610 8_3:-69167022 Msa1305660:CDS
AAGAATTTCCTCAAGCTGAG+GGG 0.677466 8_3:+69169386 None:intergenic
AATCAAATTGTTCTTCAACA+GGG 0.681729 8_3:+69169655 None:intergenic
ACCCAACAGAGATCCATTAG+GGG 0.757722 8_3:+69166865 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAAATTTAACATCTA+TGG + chr8_3:69167649-69167668 None:intergenic 10.0%
!! TATTCTAATTTAAAAGTTTA+GGG + chr8_3:69167682-69167701 None:intergenic 10.0%
!! AATATTACATATAGAATAAA+AGG + chr8_3:69168148-69168167 None:intergenic 10.0%
!! AAATTAACCTTATTAATTAT+AGG + chr8_3:69168414-69168433 None:intergenic 10.0%
!!! TTCATAACTTTTATTTGATT+TGG + chr8_3:69167191-69167210 None:intergenic 15.0%
!! CTATTCTAATTTAAAAGTTT+AGG + chr8_3:69167683-69167702 None:intergenic 15.0%
!! TCAAAGTTAAAAGATATTTC+TGG - chr8_3:69167372-69167391 Msa1305660:intron 20.0%
!! AATCTTGTTCTGATTTAAAT+TGG - chr8_3:69167978-69167997 Msa1305660:intron 20.0%
!! ATCTTGTTCTGATTTAAATT+GGG - chr8_3:69167979-69167998 Msa1305660:intron 20.0%
!!! TTTATATGAACCAATTTGTT+TGG - chr8_3:69168025-69168044 Msa1305660:intron 20.0%
!! CAAATAAGCTTGAATAATTT+AGG - chr8_3:69168061-69168080 Msa1305660:intron 20.0%
!!! CTATATGTAATATTTTAGCA+TGG - chr8_3:69168154-69168173 Msa1305660:intron 20.0%
!! AAGTGATGCAAATAATTATA+GGG + chr8_3:69168341-69168360 None:intergenic 20.0%
!! TGACTTTGTATTTATGATAA+TGG - chr8_3:69168376-69168395 Msa1305660:intron 20.0%
!! ATAATACAGTAAACAAGTTA+AGG + chr8_3:69168646-69168665 None:intergenic 20.0%
!! CTGTATTATAATGTTTATTG+TGG - chr8_3:69168657-69168676 Msa1305660:CDS 20.0%
!!! TTACACTTGTAACATATTTT+CGG + chr8_3:69168700-69168719 None:intergenic 20.0%
!! GAAGATGATATTAATGAAAT+AGG - chr8_3:69168856-69168875 Msa1305660:intron 20.0%
!! AAAATAGAGAGAATGATAAA+TGG + chr8_3:69169216-69169235 None:intergenic 20.0%
!! AAATAACATCGATAAATAAC+TGG - chr8_3:69169721-69169740 Msa1305660:CDS 20.0%
! ATCACATTTAAATGAAAGGA+GGG - chr8_3:69166784-69166803 Msa1305660:three_prime_UTR 25.0%
! AATCAAATTGTTCTTCAACA+GGG + chr8_3:69166871-69166890 None:intergenic 25.0%
!!! ATTTGAAGTTTTATTGTGTC+TGG - chr8_3:69167590-69167609 Msa1305660:CDS 25.0%
! AAGATGCAAAAATCAATTCA+AGG + chr8_3:69167764-69167783 None:intergenic 25.0%
!!! TGTTGATTTAACTTTAAAGC+TGG - chr8_3:69167806-69167825 Msa1305660:CDS 25.0%
! AAAATTCAAGCTGAAGATTA+AGG + chr8_3:69168008-69168027 None:intergenic 25.0%
! ACAAATGACACTTATTAAGA+GGG + chr8_3:69168202-69168221 None:intergenic 25.0%
! TACAAATGACACTTATTAAG+AGG + chr8_3:69168203-69168222 None:intergenic 25.0%
!!! GTGTCATTTGTAAAGAAAAA+AGG - chr8_3:69168211-69168230 Msa1305660:intron 25.0%
! AAATAATTATAGGGTACGAT+TGG + chr8_3:69168332-69168351 None:intergenic 25.0%
! GAAGTGATGCAAATAATTAT+AGG + chr8_3:69168342-69168361 None:intergenic 25.0%
!!! CTTTGTATTTATGATAATGG+TGG - chr8_3:69168379-69168398 Msa1305660:intron 25.0%
! ACACACACCTATAATTAATA+AGG - chr8_3:69168404-69168423 Msa1305660:intron 25.0%
! TTACAGTGAAGTTTATATCT+CGG + chr8_3:69168575-69168594 None:intergenic 25.0%
! ATTATAATGTTTATTGTGGC+AGG - chr8_3:69168661-69168680 Msa1305660:CDS 25.0%
! AAATATGTTACAAGTGTAAG+AGG - chr8_3:69168701-69168720 Msa1305660:intron 25.0%
! AATATGTTACAAGTGTAAGA+GGG - chr8_3:69168702-69168721 Msa1305660:intron 25.0%
!!! GATCAATTGATGATGAAAAA+AGG + chr8_3:69169064-69169083 None:intergenic 25.0%
!!! TAACATAAGAAGTTTTAAGC+AGG + chr8_3:69169092-69169111 None:intergenic 25.0%
! TTGAAGCAAAAACAAAAGAA+AGG - chr8_3:69169476-69169495 Msa1305660:CDS 25.0%
!!! TTGGTGGAAAATGTTTTTTT+TGG - chr8_3:69169553-69169572 Msa1305660:CDS 25.0%
TGGGATCACATTTAAATGAA+AGG - chr8_3:69166780-69166799 Msa1305660:three_prime_UTR 30.0%
GATCACATTTAAATGAAAGG+AGG - chr8_3:69166783-69166802 Msa1305660:three_prime_UTR 30.0%
! ATAGATGATAATGTTGCTGA+TGG - chr8_3:69166827-69166846 Msa1305660:three_prime_UTR 30.0%
GAATCAAATTGTTCTTCAAC+AGG + chr8_3:69166872-69166891 None:intergenic 30.0%
! CTCTCAGCTTTTGATATATA+CGG + chr8_3:69167286-69167305 None:intergenic 30.0%
AGATGCTGAAAATTTGAAGA+CGG - chr8_3:69167410-69167429 Msa1305660:intron 30.0%
GGGAAAACTTAAGAAGATAA+AGG - chr8_3:69167463-69167482 Msa1305660:intron 30.0%
! TTTGCATCTTTTTATATCCG+TGG - chr8_3:69167774-69167793 Msa1305660:CDS 30.0%
AATCAACACAATTTCATCCA+CGG + chr8_3:69167794-69167813 None:intergenic 30.0%
! TATGAACCAATTTGTTTGGA+TGG - chr8_3:69168029-69168048 Msa1305660:intron 30.0%
! ATGAACCAATTTGTTTGGAT+GGG - chr8_3:69168030-69168049 Msa1305660:intron 30.0%
ATGCACATAATGACTTAGAA+GGG + chr8_3:69168275-69168294 None:intergenic 30.0%
CAAAGTCAAAGATAATGACT+CGG + chr8_3:69168364-69168383 None:intergenic 30.0%
TCTTTGATTGCTTCAAAGTT+TGG + chr8_3:69168458-69168477 None:intergenic 30.0%
GTAATCAGTTAATAGATACG+AGG + chr8_3:69168553-69168572 None:intergenic 30.0%
ATTAGACAGTAAACCAATTG+AGG - chr8_3:69168595-69168614 Msa1305660:intron 30.0%
GAAAGAAAAACTGAATGATG+TGG - chr8_3:69168888-69168907 Msa1305660:intron 30.0%
! AATGATGTGGATTACTTAAC+AGG - chr8_3:69168901-69168920 Msa1305660:intron 30.0%
! ATGATGTGGATTACTTAACA+GGG - chr8_3:69168902-69168921 Msa1305660:intron 30.0%
CATATAAGAGAATGTCAGTT+GGG + chr8_3:69168936-69168955 None:intergenic 30.0%
TAAGATTGAACTGCATTGTA+TGG + chr8_3:69168976-69168995 None:intergenic 30.0%
AAATAAGATACCCTTATTCC+GGG + chr8_3:69169271-69169290 None:intergenic 30.0%
GAAATAAGATACCCTTATTC+CGG + chr8_3:69169272-69169291 None:intergenic 30.0%
CAAACGAGGAAAAAAAGTTA+TGG + chr8_3:69169304-69169323 None:intergenic 30.0%
ACAATTGAAGCAACTAATTC+AGG + chr8_3:69169419-69169438 None:intergenic 30.0%
GAATTAGTTGCTTCAATTGT+TGG - chr8_3:69169419-69169438 Msa1305660:CDS 30.0%
ACATCGATAAATAACTGGTT+AGG - chr8_3:69169726-69169745 Msa1305660:CDS 30.0%
TAAATAACTGGTTAGGCAAT+AGG - chr8_3:69169733-69169752 Msa1305660:CDS 30.0%
GGTTTCGTTTATAGATCAAT+TGG + chr8_3:69169784-69169803 None:intergenic 30.0%
TTAAATGAAAGGAGGGTAAG+AGG - chr8_3:69166791-69166810 Msa1305660:three_prime_UTR 35.0%
!! ATCATCTGAAGCTGTAGTTT+TGG + chr8_3:69167032-69167051 None:intergenic 35.0%
GAGAAATTATCTGACTTCAG+TGG - chr8_3:69167094-69167113 Msa1305660:CDS 35.0%
GCTTAAAATGAACCGAAACA+TGG - chr8_3:69167312-69167331 Msa1305660:intron 35.0%
! TAAGTTTTCCCTTTTGTCCA+CGG + chr8_3:69167454-69167473 None:intergenic 35.0%
TCACAGCCAATAATGACATT+CGG + chr8_3:69167526-69167545 None:intergenic 35.0%
TGGAAATCTATCATCTTAGC+AGG + chr8_3:69167629-69167648 None:intergenic 35.0%
AGAACTAAAATACCACATCG+AGG - chr8_3:69167715-69167734 Msa1305660:CDS 35.0%
! TTCTGGAAAACCAATCAAGA+AGG - chr8_3:69167844-69167863 Msa1305660:intron 35.0%
AATGTCTCTTCCTTCTTGAT+TGG + chr8_3:69167857-69167876 None:intergenic 35.0%
ATTACCTGTAAATGAAGCCT+CGG - chr8_3:69167874-69167893 Msa1305660:intron 35.0%
AAAGGGAAAAAATCTGACAG+TGG - chr8_3:69167899-69167918 Msa1305660:intron 35.0%
AATCAGAACAAGATTCCCAT+TGG + chr8_3:69167973-69167992 None:intergenic 35.0%
! TGAACCAATTTGTTTGGATG+GGG - chr8_3:69168031-69168050 Msa1305660:intron 35.0%
GATGCACATAATGACTTAGA+AGG + chr8_3:69168276-69168295 None:intergenic 35.0%
! GCATTGACAGATAATGACTT+AGG + chr8_3:69168302-69168321 None:intergenic 35.0%
AACATTCACAGCGTATGAAA+GGG + chr8_3:69168510-69168529 None:intergenic 35.0%
AAACATTCACAGCGTATGAA+AGG + chr8_3:69168511-69168530 None:intergenic 35.0%
GCATTAATTGACACCTCAAT+TGG + chr8_3:69168611-69168630 None:intergenic 35.0%
TCATTTATCTCGGGATTGTA+AGG - chr8_3:69168729-69168748 Msa1305660:intron 35.0%
TGACTATGCAACAGATCATT+TGG + chr8_3:69168760-69168779 None:intergenic 35.0%
! AAGTTTGAAGCACTCATGTT+AGG + chr8_3:69168808-69168827 None:intergenic 35.0%
GCATATAAGAGAATGTCAGT+TGG + chr8_3:69168937-69168956 None:intergenic 35.0%
TATCGAGTGAAGATAATTCC+CGG - chr8_3:69169000-69169019 Msa1305660:intron 35.0%
TTTACTACGCATCAATTACG+AGG + chr8_3:69169170-69169189 None:intergenic 35.0%
AACTAATTCAGGATCAGTAC+AGG + chr8_3:69169408-69169427 None:intergenic 35.0%
! ATCTCTACAGTGTTGAAACT+TGG + chr8_3:69169622-69169641 None:intergenic 35.0%
TACTACTGTTAGATAGGCAA+CGG - chr8_3:69169684-69169703 Msa1305660:CDS 35.0%
! GATGATAATGTTGCTGATGG+AGG - chr8_3:69166830-69166849 Msa1305660:three_prime_UTR 40.0%
TCTGAGAAGAATGTTGCTGA+TGG - chr8_3:69166896-69166915 Msa1305660:three_prime_UTR 40.0%
AGACACCTCTCAAACTAGTT+TGG - chr8_3:69166994-69167013 Msa1305660:three_prime_UTR 40.0%
AAGAATTTCCTCAAGCTGAG+GGG + chr8_3:69167140-69167159 None:intergenic 40.0%
CAAGAATTTCCTCAAGCTGA+GGG + chr8_3:69167141-69167160 None:intergenic 40.0%
TCAAGAATTTCCTCAAGCTG+AGG + chr8_3:69167142-69167161 None:intergenic 40.0%
GAAATTCTTGATCGAGCTCT+GGG - chr8_3:69167151-69167170 Msa1305660:CDS 40.0%
TGCTGAAAATTTGAAGACGG+TGG - chr8_3:69167413-69167432 Msa1305660:intron 40.0%
TGAAAATTTGAAGACGGTGG+TGG - chr8_3:69167416-69167435 Msa1305660:intron 40.0%
AAAAATCAGCCGTGGACAAA+AGG - chr8_3:69167442-69167461 Msa1305660:intron 40.0%
AAAATCAGCCGTGGACAAAA+GGG - chr8_3:69167443-69167462 Msa1305660:intron 40.0%
GAGCATCCGAATGTCATTAT+TGG - chr8_3:69167517-69167536 Msa1305660:CDS 40.0%
GGTGTGTATTTGTAGTCTTC+TGG - chr8_3:69167827-69167846 Msa1305660:CDS 40.0%
TAAATGAAGCCTCGGACAAA+GGG - chr8_3:69167882-69167901 Msa1305660:intron 40.0%
!!! AGATTTTTTCCCTTTGTCCG+AGG + chr8_3:69167894-69167913 None:intergenic 40.0%
AACTCGGTATAGTAGGTTCA+TGG - chr8_3:69168117-69168136 Msa1305660:intron 40.0%
AAAGGGAAATGAACCAAGCT+TGG + chr8_3:69168493-69168512 None:intergenic 40.0%
!! CATATTTTCGGAGCATCTAC+AGG + chr8_3:69168688-69168707 None:intergenic 40.0%
TGTTACAAGTGTAAGAGGGT+AGG - chr8_3:69168706-69168725 Msa1305660:intron 40.0%
AGAGGGTAGGTCATTTATCT+CGG - chr8_3:69168719-69168738 Msa1305660:intron 40.0%
! AGGATTTTCTTCAGCTTCAC+TGG + chr8_3:69168788-69168807 None:intergenic 40.0%
CTTGTCCTTAGAAGATAGAG+TGG - chr8_3:69168825-69168844 Msa1305660:intron 40.0%
CATTGCCACTCTATCTTCTA+AGG + chr8_3:69168833-69168852 None:intergenic 40.0%
CTTAGAAGATAGAGTGGCAA+TGG - chr8_3:69168831-69168850 Msa1305660:intron 40.0%
TTATATGCTGTTCCCGTATG+TGG - chr8_3:69168949-69168968 Msa1305660:intron 40.0%
TGCATTGTATGGACCACATA+CGG + chr8_3:69168965-69168984 None:intergenic 40.0%
TTATGTTATGACCAAGTCGC+AGG - chr8_3:69169104-69169123 Msa1305660:intron 40.0%
TTCTATGATTTCCTGCGACT+TGG + chr8_3:69169118-69169137 None:intergenic 40.0%
CAATTACGAGGAGCAAAAAG+TGG + chr8_3:69169158-69169177 None:intergenic 40.0%
TTTATGCAGCAACAGATTCC+CGG - chr8_3:69169250-69169269 Msa1305660:CDS 40.0%
!! GATTTGTTGCTTCTGACATG+TGG + chr8_3:69169364-69169383 None:intergenic 40.0%
AGAAGCAACAAATCGTGAGA+AGG - chr8_3:69169370-69169389 Msa1305660:CDS 40.0%
AATGTGAAGATAACTGCAGC+TGG - chr8_3:69169443-69169462 Msa1305660:CDS 40.0%
AAAAAGAGCAGTGCCAAACA+AGG - chr8_3:69169500-69169519 Msa1305660:CDS 40.0%
AAAAGAGCAGTGCCAAACAA+GGG - chr8_3:69169501-69169520 Msa1305660:CDS 40.0%
TCTTGACTAACTCCCTTGTT+TGG + chr8_3:69169516-69169535 None:intergenic 40.0%
AGTTAGTCAAGACCCTTTGT+GGG - chr8_3:69169524-69169543 Msa1305660:CDS 40.0%
CACCAAGTAAATCCCACAAA+GGG + chr8_3:69169539-69169558 None:intergenic 40.0%
! CTACAGTGTTGAAACTTGGA+AGG + chr8_3:69169618-69169637 None:intergenic 40.0%
!!! GTTTTTTCCGTTACCCCTAA+TGG - chr8_3:69169645-69169664 Msa1305660:CDS 40.0%
GGTGAGTACTACTGTTAGAT+AGG - chr8_3:69169678-69169697 Msa1305660:CDS 40.0%
AGGCAACGGCTGAAATTATA+TGG - chr8_3:69169698-69169717 Msa1305660:CDS 40.0%
!!! TTTTGGCCTGCTATTTCGCT+TGG - chr8_3:69166745-69166764 Msa1305660:three_prime_UTR 45.0%
TCTCATCCAAGCGAAATAGC+AGG + chr8_3:69166754-69166773 None:intergenic 45.0%
TCGCTTGGATGAGAGTTCAT+TGG - chr8_3:69166760-69166779 Msa1305660:three_prime_UTR 45.0%
CGCTTGGATGAGAGTTCATT+GGG - chr8_3:69166761-69166780 Msa1305660:three_prime_UTR 45.0%
TAATGTTGCTGATGGAGGAG+AGG - chr8_3:69166835-69166854 Msa1305660:three_prime_UTR 45.0%
! AAGCAAGTCTTCTGAGGGTA+TGG + chr8_3:69166972-69166991 None:intergenic 45.0%
TCTGCAAGCAAGTCTTCTGA+GGG + chr8_3:69166977-69166996 None:intergenic 45.0%
! TGCAGCCAAACTAGTTTGAG+AGG + chr8_3:69167002-69167021 None:intergenic 45.0%
GGAAATTCTTGATCGAGCTC+TGG - chr8_3:69167150-69167169 Msa1305660:CDS 45.0%
AACCAAGCAAACCTGCAGTA+AGG - chr8_3:69167254-69167273 Msa1305660:intron 45.0%
ACCAAGCAAACCTGCAGTAA+GGG - chr8_3:69167255-69167274 Msa1305660:intron 45.0%
TACGGTTTATCCCTTACTGC+AGG + chr8_3:69167268-69167287 None:intergenic 45.0%
GGATGTGCTTCTCCATGTTT+CGG + chr8_3:69167327-69167346 None:intergenic 45.0%
GGTGGTAAAAAAATCAGCCG+TGG - chr8_3:69167434-69167453 Msa1305660:intron 45.0%
TGCTGAGAATATCCTCGATG+TGG + chr8_3:69167730-69167749 None:intergenic 45.0%
TTGTCCGAGGCTTCATTTAC+AGG + chr8_3:69167881-69167900 None:intergenic 45.0%
GTAAATGAAGCCTCGGACAA+AGG - chr8_3:69167881-69167900 Msa1305660:intron 45.0%
CAGCACATTGTCAGCAATAC+TGG + chr8_3:69167948-69167967 None:intergenic 45.0%
TGACAATGTGCTGAGCCAAT+GGG - chr8_3:69167955-69167974 Msa1305660:intron 45.0%
CAAGCCCCATCCAAACAAAT+TGG + chr8_3:69168038-69168057 None:intergenic 45.0%
! CAATTTGTTTGGATGGGGCT+TGG - chr8_3:69168036-69168055 Msa1305660:intron 45.0%
GCTCACAAACTCGGTATAGT+AGG - chr8_3:69168110-69168129 Msa1305660:intron 45.0%
! AGTTGAGTTGTGACCAAGCT+TGG - chr8_3:69168477-69168496 Msa1305660:intron 45.0%
GAGGGTAGGTCATTTATCTC+GGG - chr8_3:69168720-69168739 Msa1305660:intron 45.0%
AAGAGAATGTCAGTTGGGAG+TGG + chr8_3:69168931-69168950 None:intergenic 45.0%
GCATTGTATGGACCACATAC+GGG + chr8_3:69168964-69168983 None:intergenic 45.0%
TTTCCCTTTCTTCACAGGTC+CGG + chr8_3:69169022-69169041 None:intergenic 45.0%
AGACCTTTCCCTTTCTTCAC+AGG + chr8_3:69169027-69169046 None:intergenic 45.0%
AGCAACAGATTCCCGGAATA+AGG - chr8_3:69169257-69169276 Msa1305660:CDS 45.0%
GCAACAGATTCCCGGAATAA+GGG - chr8_3:69169258-69169277 Msa1305660:CDS 45.0%
TGCAGCTGTACAATCAAACG+AGG + chr8_3:69169318-69169337 None:intergenic 45.0%
CTTCTGACATGTGGCTGAAT+AGG + chr8_3:69169355-69169374 None:intergenic 45.0%
GAGTTAGTCAAGACCCTTTG+TGG - chr8_3:69169523-69169542 Msa1305660:CDS 45.0%
GACCCTTTGTGGGATTTACT+TGG - chr8_3:69169534-69169553 Msa1305660:CDS 45.0%
CCACCAAGTAAATCCCACAA+AGG + chr8_3:69169540-69169559 None:intergenic 45.0%
CCTTTGTGGGATTTACTTGG+TGG - chr8_3:69169537-69169556 Msa1305660:CDS 45.0%
CAGAGATCCATTAGGGGTAA+CGG + chr8_3:69169655-69169674 None:intergenic 45.0%
! TACCCCTAATGGATCTCTGT+TGG - chr8_3:69169656-69169675 Msa1305660:CDS 45.0%
! ACCCCTAATGGATCTCTGTT+GGG - chr8_3:69169657-69169676 Msa1305660:CDS 45.0%
ACCCAACAGAGATCCATTAG+GGG + chr8_3:69169661-69169680 None:intergenic 45.0%
CACCCAACAGAGATCCATTA+GGG + chr8_3:69169662-69169681 None:intergenic 45.0%
TCACCCAACAGAGATCCATT+AGG + chr8_3:69169663-69169682 None:intergenic 45.0%
TGAAAGGAGGGTAAGAGGAG+AGG - chr8_3:69166796-69166815 Msa1305660:three_prime_UTR 50.0%
TGGAGAAACTGCTGCAGACT+CGG - chr8_3:69166916-69166935 Msa1305660:three_prime_UTR 50.0%
AAACTGCTGCAGACTCGGAA+AGG - chr8_3:69166921-69166940 Msa1305660:three_prime_UTR 50.0%
GTCTGCAAGCAAGTCTTCTG+AGG + chr8_3:69166978-69166997 None:intergenic 50.0%
! TCCCTTACTGCAGGTTTGCT+TGG + chr8_3:69167259-69167278 None:intergenic 50.0%
TCCAAGCGATGGACATGGAA+AGG - chr8_3:69167344-69167363 Msa1305660:intron 50.0%
TCCTTTCCATGTCCATCGCT+TGG + chr8_3:69167348-69167367 None:intergenic 50.0%
GAAGTATGCTGACCAAGACG+AGG - chr8_3:69167487-69167506 Msa1305660:intron 50.0%
CTGACCAAGACGAGGAAGAA+AGG - chr8_3:69167495-69167514 Msa1305660:intron 50.0%
TGCTCCTTTCTTCCTCGTCT+TGG + chr8_3:69167502-69167521 None:intergenic 50.0%
CTGACAATGTGCTGAGCCAA+TGG - chr8_3:69167954-69167973 Msa1305660:intron 50.0%
GCTGAGCTAGCTCACAAACT+CGG - chr8_3:69168101-69168120 Msa1305660:intron 50.0%
ATTCCCGGACCTGTGAAGAA+AGG - chr8_3:69169015-69169034 Msa1305660:CDS 50.0%
TTCCCGGACCTGTGAAGAAA+GGG - chr8_3:69169016-69169035 Msa1305660:CDS 50.0%
TTCCCTTTCTTCACAGGTCC+GGG + chr8_3:69169021-69169040 None:intergenic 50.0%
GGACCTGTGAAGAAAGGGAA+AGG - chr8_3:69169021-69169040 Msa1305660:CDS 50.0%
AAGGAGGGTAAGAGGAGAGG+AGG - chr8_3:69166799-69166818 Msa1305660:three_prime_UTR 55.0%
TGTTGCTGATGGAGGAGAGG+AGG - chr8_3:69166838-69166857 Msa1305660:three_prime_UTR 55.0%
GATGGAGGAGAGGAGGAAAC+TGG - chr8_3:69166845-69166864 Msa1305660:three_prime_UTR 55.0%
GCTGCAGACTCGGAAAGGAA+TGG - chr8_3:69166926-69166945 Msa1305660:three_prime_UTR 55.0%
CTGAGGGGAGACAGATGCTA+AGG + chr8_3:69167125-69167144 None:intergenic 55.0%
ATCTGTCTCCCCTCAGCTTG+AGG - chr8_3:69167129-69167148 Msa1305660:CDS 55.0%
!! CTTGATCGAGCTCTGGGACT+TGG - chr8_3:69167157-69167176 Msa1305660:CDS 55.0%
! GGAGAAGCACATCCAAGCGA+TGG - chr8_3:69167333-69167352 Msa1305660:intron 55.0%
GCACATCCAAGCGATGGACA+TGG - chr8_3:69167339-69167358 Msa1305660:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 69166740 69169805 69166740 ID=Msa1305660;Name=Msa1305660
chr8_3 mRNA 69166740 69169805 69166740 ID=Msa1305660-mRNA-1;Parent=Msa1305660;Name=Msa1305660-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.75|0.6|1|1|1|5|276|461
chr8_3 exon 69166740 69167212 69166740 ID=Msa1305660-mRNA-1:exon:21453;Parent=Msa1305660-mRNA-1
chr8_3 exon 69167503 69167862 69167503 ID=Msa1305660-mRNA-1:exon:21452;Parent=Msa1305660-mRNA-1
chr8_3 exon 69168625 69168703 69168625 ID=Msa1305660-mRNA-1:exon:21451;Parent=Msa1305660-mRNA-1
chr8_3 exon 69169004 69169116 69169004 ID=Msa1305660-mRNA-1:exon:21450;Parent=Msa1305660-mRNA-1
chr8_3 exon 69169169 69169805 69169169 ID=Msa1305660-mRNA-1:exon:21449;Parent=Msa1305660-mRNA-1
chr8_3 CDS 69169169 69169805 69169169 ID=Msa1305660-mRNA-1:cds;Parent=Msa1305660-mRNA-1
chr8_3 CDS 69169004 69169116 69169004 ID=Msa1305660-mRNA-1:cds;Parent=Msa1305660-mRNA-1
chr8_3 CDS 69168625 69168703 69168625 ID=Msa1305660-mRNA-1:cds;Parent=Msa1305660-mRNA-1
chr8_3 CDS 69167503 69167862 69167503 ID=Msa1305660-mRNA-1:cds;Parent=Msa1305660-mRNA-1
chr8_3 CDS 69167016 69167212 69167016 ID=Msa1305660-mRNA-1:cds;Parent=Msa1305660-mRNA-1
chr8_3 three_prime_UTR 69166740 69167015 69166740 ID=Msa1305660-mRNA-1:three_prime_utr;Parent=Msa1305660-mRNA-1
Gene Sequence

>Msa1305660

ATGGGTTTTGGCCTGCTATTTCGCTTGGATGAGAGTTCATTGGGATCACATTTAAATGAAAGGAGGGTAAGAGGAGAGGAGGAAACAATAGATGATAATGTTGCTGATGGAGGAGAGGAGGAAACTGGCCCTGTTGAAGAACAATTTGATTCAGAGTCTGAGAAGAATGTTGCTGATGGAGAAACTGCTGCAGACTCGGAAAGGAATGGTAATATATCTGCATATTCATCCATACCCTCAGAAGACTTGCTTGCAGACACCTCTCAAACTAGTTTGGCTGCAATTAATGCCAAAACTACAGCTTCAGATGATTTTTCTGCAAAAGATACAAGTACAAAAAATATGCTTGATAGTGAGAAATTATCTGACTTCAGTGGAAATGCCTTAGCATCTGTCTCCCCTCAGCTTGAGGAAATTCTTGATCGAGCTCTGGGACTTGGATCTGTTGCCAAATCAAATAAAAGTTATGAAGCTGAGAATACTCAGCTTGATTTAAGCAGTGAGAATCGTAACGAACCAAGCAAACCTGCAGTAAGGGATAAACCGTATATATCAAAAGCTGAGAGAAGAAAGCTTAAAATGAACCGAAACATGGAGAAGCACATCCAAGCGATGGACATGGAAAGGACAAATCAAAACGGTGGTGGTAAAAAAATCAGCCGTGGACAAAAGGGAAAACTTAAGAAGATAAAGGAGAAGTATGCTGACCAAGACGAGGAAGAAAGGAGCATCCGAATGTCATTATTGGCTTCTTCTGGAAAACCAATCAAGAAGGAAGAGACATTACCTGTAAATGAAGCCTCGGACAAAGGGAAAAAATCTGACAGTGGTCCTGTAGATGCTCCGAAAATATGTTACAAGTGTAAGAGGGTAGGTCATTTATCTCGGGATTGTAAGGAGCAACCAAATGATCTGTTGCATAGTCATGCAACCAGTGAAGCTGAAGAAAATCCTAACATGAGTGCTTCAAACTTGTCCTTAGAAGATAGAGTGGCAATGGAAGAAGATGATATTAATGAAATAGGAGAAGAAGAGAAAGAAAAACTGAATGATGTGGATTACTTAACAGGGAATCCACTCCCAACTGACATTCTCTTATATGCTGTTCCCGTATGTGGTCCATACAATGCAGTTCAATCTTACAAGTATCGAGTGAAGATAATTCCCGGACCTGTGAAGAAAGGGAAAGCTGCAAAAACTGCAATGAACCTATTCAGCCACATGTCAGAAGCAACAAATCGTGAGAAGGAGTTGATGAAAGCCTGTACTGATCCTGAATTAGTTGCTTCAATTGTTGGTAATGTGAAGATAACTGCAGCTGGACTTACTCAATTGAAGCAAAAACAAAAGAAAGGCAAAAAGAGCAGTGCCAAACAAGGGAGTTAG

Protein sequence

>Msa1305660

MGFGLLFRLDESSLGSHLNERRVRGEEETIDDNVADGGEEETGPVEEQFDSESEKNVADGETAADSERNGNISAYSSIPSEDLLADTSQTSLAAINAKTTASDDFSAKDTSTKNMLDSEKLSDFSGNALASVSPQLEEILDRALGLGSVAKSNKSYEAENTQLDLSSENRNEPSKPAVRDKPYISKAERRKLKMNRNMEKHIQAMDMERTNQNGGGKKISRGQKGKLKKIKEKYADQDEEERSIRMSLLASSGKPIKKEETLPVNEASDKGKKSDSGPVDAPKICYKCKRVGHLSRDCKEQPNDLLHSHATSEAEENPNMSASNLSLEDRVAMEEDDINEIGEEEKEKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYRVKIIPGPVKKGKAAKTAMNLFSHMSEATNREKELMKACTDPELVASIVGNVKITAAGLTQLKQKQKKGKKSSAKQGS*