Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197380 | AES64485.2 | 79.049 | 778 | 74 | 7 | 1 | 690 | 1 | 777 | 0.0 | 1201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197380 | sp|Q9SU29|UPL5_ARATH | 41.232 | 747 | 318 | 15 | 45 | 688 | 143 | 871 | 4.32e-167 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197380 | G7IM34 | 79.049 | 778 | 74 | 7 | 1 | 690 | 1 | 777 | 0.0 | 1201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0197380 | Msa0239240 | 0.922002 | 1.731147e-88 | -8.615850e-47 |
| Msa0197380 | Msa0317010 | 0.932213 | 1.193099e-94 | -8.615850e-47 |
| Msa0197380 | Msa0342750 | 0.801952 | 7.063989e-49 | -8.615850e-47 |
| Msa0197380 | Msa0357340 | 0.808155 | 3.559072e-50 | -8.615850e-47 |
| Msa0197380 | Msa0362450 | 0.800357 | 1.496940e-48 | -8.615850e-47 |
| Msa0197380 | Msa0411390 | 0.801611 | 8.298228e-49 | -8.615850e-47 |
| Msa0197380 | Msa0516440 | 0.803200 | 3.905851e-49 | -8.615850e-47 |
| Msa0197380 | Msa0585230 | 0.800446 | 1.435596e-48 | -8.615850e-47 |
| Msa0197380 | Msa0695430 | 0.800538 | 1.375352e-48 | -8.615850e-47 |
| Msa0197380 | Msa0967280 | 0.827104 | 1.881232e-54 | -8.615850e-47 |
| Msa0197380 | Msa0969520 | 0.802057 | 6.721109e-49 | -8.615850e-47 |
| Msa0197380 | Msa0976670 | 0.817044 | 4.044150e-52 | -8.615850e-47 |
| Msa0197380 | Msa1003620 | 0.813993 | 1.932072e-51 | -8.615850e-47 |
| Msa0197380 | Msa1014540 | 0.812104 | 5.015113e-51 | -8.615850e-47 |
| Msa0197380 | Msa1046460 | 0.804996 | 1.652254e-49 | -8.615850e-47 |
| Msa0197380 | Msa1284680 | 0.806182 | 9.312566e-50 | -8.615850e-47 |
| Msa0197380 | Msa1458750 | 0.810837 | 9.452652e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197380 | MtrunA17_Chr4g0075761 | 47.832 | 761 | 279 | 14 | 42 | 689 | 125 | 880 | 0.0 | 634 |
| Msa0197380 | MtrunA17_Chr2g0289941 | 65.272 | 478 | 80 | 4 | 42 | 433 | 57 | 534 | 0.0 | 600 |
| Msa0197380 | MtrunA17_Chr2g0289961 | 79.339 | 363 | 37 | 2 | 98 | 422 | 9 | 371 | 0.0 | 573 |
| Msa0197380 | MtrunA17_Chr2g0289951 | 86.458 | 288 | 25 | 2 | 417 | 690 | 15 | 302 | 2.07e-176 | 504 |
| Msa0197380 | MtrunA17_Chr2g0289911 | 59.875 | 481 | 116 | 7 | 16 | 422 | 56 | 533 | 1.15e-173 | 507 |
| Msa0197380 | MtrunA17_Chr2g0289901 | 78.370 | 319 | 24 | 2 | 417 | 690 | 15 | 333 | 1.79e-171 | 493 |
| Msa0197380 | MtrunA17_Chr2g0289891 | 54.702 | 521 | 144 | 7 | 16 | 446 | 61 | 579 | 1.96e-170 | 500 |
| Msa0197380 | MtrunA17_Chr2g0289881 | 88.889 | 189 | 20 | 1 | 417 | 604 | 18 | 206 | 6.17e-112 | 338 |
| Msa0197380 | MtrunA17_Chr2g0289931 | 84.615 | 169 | 25 | 1 | 439 | 606 | 1 | 169 | 7.41e-94 | 289 |
| Msa0197380 | MtrunA17_Chr2g0289871 | 92.683 | 82 | 6 | 0 | 608 | 689 | 1 | 82 | 1.27e-47 | 162 |
| Msa0197380 | MtrunA17_Chr3g0132611 | 31.638 | 354 | 207 | 10 | 348 | 675 | 3303 | 3647 | 1.11e-41 | 164 |
| Msa0197380 | MtrunA17_Chr2g0289921 | 81.707 | 82 | 15 | 0 | 608 | 689 | 1 | 82 | 1.68e-41 | 145 |
| Msa0197380 | MtrunA17_Chr5g0427791 | 31.608 | 367 | 215 | 11 | 348 | 688 | 3297 | 3653 | 1.89e-41 | 163 |
| Msa0197380 | MtrunA17_Chr4g0052551 | 29.730 | 370 | 218 | 10 | 348 | 688 | 3379 | 3735 | 1.02e-36 | 149 |
| Msa0197380 | MtrunA17_Chr4g0052561 | 29.459 | 370 | 219 | 10 | 348 | 688 | 3400 | 3756 | 1.77e-35 | 145 |
| Msa0197380 | MtrunA17_Chr7g0265431 | 25.137 | 366 | 228 | 10 | 345 | 675 | 781 | 1135 | 9.26e-27 | 117 |
| Msa0197380 | MtrunA17_Chr2g0293841 | 26.554 | 354 | 226 | 9 | 348 | 675 | 666 | 1011 | 2.91e-25 | 112 |
| Msa0197380 | MtrunA17_Chr4g0037101 | 25.685 | 292 | 166 | 8 | 430 | 675 | 1581 | 1867 | 3.38e-14 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0197380 | AT4G12570.1 | 41.232 | 747 | 318 | 15 | 45 | 688 | 143 | 871 | 4.39e-168 | 504 |
| Msa0197380 | AT1G55860.1 | 31.608 | 367 | 215 | 11 | 348 | 688 | 3323 | 3679 | 2.38e-38 | 154 |
| Msa0197380 | AT1G70320.1 | 31.356 | 354 | 208 | 10 | 348 | 675 | 3300 | 3644 | 1.39e-37 | 152 |
| Msa0197380 | AT3G53090.1 | 26.099 | 364 | 227 | 10 | 345 | 675 | 775 | 1129 | 2.44e-27 | 119 |
| Msa0197380 | AT3G53090.2 | 26.099 | 364 | 227 | 10 | 345 | 675 | 775 | 1129 | 2.44e-27 | 119 |
| Msa0197380 | AT3G17205.1 | 26.836 | 354 | 225 | 9 | 348 | 675 | 671 | 1016 | 1.17e-25 | 113 |
| Msa0197380 | AT3G17205.3 | 26.836 | 354 | 225 | 9 | 348 | 675 | 671 | 1016 | 1.17e-25 | 113 |
| Msa0197380 | AT3G17205.2 | 26.836 | 354 | 225 | 9 | 348 | 675 | 657 | 1002 | 1.22e-25 | 113 |
| Msa0197380 | AT5G02880.1 | 25.568 | 352 | 202 | 12 | 377 | 675 | 1144 | 1488 | 2.72e-16 | 84.0 |
| Msa0197380 | AT4G38600.3 | 24.516 | 310 | 178 | 8 | 416 | 675 | 1571 | 1874 | 2.33e-12 | 71.2 |
| Msa0197380 | AT4G38600.1 | 24.516 | 310 | 178 | 8 | 416 | 675 | 1571 | 1874 | 2.33e-12 | 71.2 |
Find 132 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTATATTTATTAAGTTAT+TGG | 0.162663 | 2_1:+15217387 | Msa0197380:CDS |
| GTTCCACGAGAATTGTAATT+TGG | 0.199105 | 2_1:-15216515 | None:intergenic |
| TATTGCTGATTCTGTGATTA+AGG | 0.213867 | 2_1:+15216925 | Msa0197380:CDS |
| ATTATCAGGTTCACAGGATT+TGG | 0.225978 | 2_1:-15220649 | None:intergenic |
| TATTGACAGGTCTCAGGTTT+TGG | 0.230502 | 2_1:+15217757 | Msa0197380:CDS |
| TCTACAGAGGTAGAGGAATT+AGG | 0.232151 | 2_1:+15219283 | Msa0197380:CDS |
| TATTAAGTTATTGGGCAAAA+TGG | 0.238479 | 2_1:+15217396 | Msa0197380:CDS |
| AGAAGGTTCGTCTGTTCTTT+TGG | 0.247644 | 2_1:+15220565 | Msa0197380:CDS |
| TTGCAGCTACTATACATTAT+AGG | 0.259455 | 2_1:-15219202 | None:intergenic |
| CATACCAAGTATCTTGGTTT+TGG | 0.266034 | 2_1:+15219565 | Msa0197380:CDS |
| ACTGCAGGGTGATCTATTTA+TGG | 0.270574 | 2_1:+15217820 | Msa0197380:CDS |
| CTACTTGTCTGCAGCATCTA+TGG | 0.277385 | 2_1:+15219024 | Msa0197380:intron |
| CGACTTAAAAGATGAAATAT+TGG | 0.278126 | 2_1:+15217721 | Msa0197380:CDS |
| TATAATGAGACCACCCATTA+TGG | 0.278183 | 2_1:-15217489 | None:intergenic |
| ATTATATTTATTAAGTTATT+GGG | 0.281268 | 2_1:+15217388 | Msa0197380:CDS |
| TGTTTACCTTGAGGTGTTAT+TGG | 0.292853 | 2_1:+15216994 | Msa0197380:CDS |
| GCTTTCGTTCAACGTTGTTT+TGG | 0.299991 | 2_1:+15217240 | Msa0197380:CDS |
| AAACAAAACTCACCAGTATT+AGG | 0.304280 | 2_1:-15217971 | None:intergenic |
| CTGGTTGGCCGTGAGAATTT+TGG | 0.314742 | 2_1:-15216422 | None:intergenic |
| AAAGAGGATCCCTTGTTTGC+AGG | 0.329535 | 2_1:+15217346 | Msa0197380:CDS |
| CGAAGCATAACCTTTCCTTT+AGG | 0.332753 | 2_1:-15217133 | None:intergenic |
| ACTGAGGGAGTGGTTTGTTT+TGG | 0.334461 | 2_1:+15217877 | Msa0197380:CDS |
| TATATTGATTCAGATGCATT+AGG | 0.337168 | 2_1:+15219250 | Msa0197380:CDS |
| ATATTACTCTAGAAGATATT+CGG | 0.337527 | 2_1:+15219170 | Msa0197380:CDS |
| ATATTGTTTCTTTGATTCTC+AGG | 0.343235 | 2_1:+15216770 | Msa0197380:CDS |
| TAAAGGAAAGGTTATGCTTC+GGG | 0.345031 | 2_1:+15217135 | Msa0197380:CDS |
| GTTAACAAGAAACGTGAAAA+AGG | 0.346285 | 2_1:+15217451 | Msa0197380:CDS |
| ATGTAATATCTGCTTAGATA+TGG | 0.365977 | 2_1:-15219413 | None:intergenic |
| ATGACATTTCTGTTGAAGAT+TGG | 0.367109 | 2_1:+15219536 | Msa0197380:CDS |
| GCATCTTTGTTGACGCTTGT+TGG | 0.374257 | 2_1:+15217091 | Msa0197380:CDS |
| TTAAATTCTCTGATCATTTG+AGG | 0.379653 | 2_1:+15217269 | Msa0197380:CDS |
| GATGGGGACGTTATCCATAA+TGG | 0.381622 | 2_1:+15217475 | Msa0197380:CDS |
| AAACGATGCAAATCTTCAAT+TGG | 0.399515 | 2_1:+15216696 | Msa0197380:CDS |
| GATGAGGGCAAATGATTATC+AGG | 0.400029 | 2_1:-15220663 | None:intergenic |
| CTAAGGTACTTCATCTTCTC+TGG | 0.401953 | 2_1:+15219061 | Msa0197380:CDS |
| GCATCCAATCAAAATCTTCA+TGG | 0.405039 | 2_1:-15219498 | None:intergenic |
| GACTTAAAAGATGAAATATT+GGG | 0.405171 | 2_1:+15217722 | Msa0197380:CDS |
| AGATCACCCTGCAGTGATCT+AGG | 0.411629 | 2_1:-15217812 | None:intergenic |
| TAGTAGCTGCAAGCAAATAT+TGG | 0.414914 | 2_1:+15219213 | Msa0197380:CDS |
| GAACACATCAGCTGCAGTTT+CGG | 0.417894 | 2_1:+15220768 | Msa0197380:CDS |
| GTGAAACATTTACCAGTTGA+AGG | 0.421692 | 2_1:+15220594 | Msa0197380:CDS |
| AAGGCACATACCAAGTATCT+TGG | 0.429383 | 2_1:+15219559 | Msa0197380:CDS |
| CTAAAGGAAAGGTTATGCTT+CGG | 0.430707 | 2_1:+15217134 | Msa0197380:CDS |
| TTCAATTGGTTGGACGGTTG+AGG | 0.451250 | 2_1:+15216710 | Msa0197380:CDS |
| TGCATTAGCTTTGAAGAAGA+AGG | 0.456195 | 2_1:+15219093 | Msa0197380:CDS |
| TATTACTCTAGAAGATATTC+GGG | 0.458771 | 2_1:+15219171 | Msa0197380:CDS |
| TGTGAATTGCTTAGAAGGAC+AGG | 0.459051 | 2_1:+15217022 | Msa0197380:CDS |
| TGAAGTCATGGAGGATTGCT+TGG | 0.463756 | 2_1:+15217429 | Msa0197380:CDS |
| TGGTAAATGCTCTGCACCTA+AGG | 0.468588 | 2_1:+15219044 | Msa0197380:CDS |
| CTCGTCTCCAAAGATGAAAA+AGG | 0.472176 | 2_1:+15216474 | Msa0197380:CDS |
| CATCATCACCAAATGCCTCC+TGG | 0.472195 | 2_1:-15217690 | None:intergenic |
| CCTTCCAAAACCAAGATACT+TGG | 0.475192 | 2_1:-15219569 | None:intergenic |
| TTGTTGTGGATAGTAAGAAC+AGG | 0.477045 | 2_1:+15219347 | Msa0197380:CDS |
| CATTTCTGTTGAAGATTGGA+AGG | 0.477240 | 2_1:+15219540 | Msa0197380:CDS |
| TATAATATCAGCAAAACCTT+GGG | 0.478264 | 2_1:-15219440 | None:intergenic |
| GATGCTTATTGACAGGTCTC+AGG | 0.478608 | 2_1:+15217751 | Msa0197380:CDS |
| CAGGCTTTGTAGAGGTGAAT+CGG | 0.478727 | 2_1:+15216789 | Msa0197380:CDS |
| CAGAGAAGATGAAGTACCTT+AGG | 0.478865 | 2_1:-15219060 | None:intergenic |
| GCTAGCTTTCATAATCCTAA+AGG | 0.480034 | 2_1:+15217118 | Msa0197380:CDS |
| AGCTATGCCTAGATCACTGC+AGG | 0.483671 | 2_1:+15217805 | Msa0197380:CDS |
| AGCAATCCTCCATGACTTCA+AGG | 0.483811 | 2_1:-15217426 | None:intergenic |
| GATGCAAATCTTCAATTGGT+TGG | 0.485465 | 2_1:+15216700 | Msa0197380:CDS |
| ATGAACTGTCCCACGGGCAA+GGG | 0.489287 | 2_1:+15217217 | Msa0197380:CDS |
| TGTAGAGGTGAATCGGTGAT+TGG | 0.489836 | 2_1:+15216796 | Msa0197380:CDS |
| CAAATCTTCAATTGGTTGGA+CGG | 0.491101 | 2_1:+15216704 | Msa0197380:CDS |
| ATGATAGCCATAGAAGAATA+CGG | 0.494700 | 2_1:-15220717 | None:intergenic |
| GATATGAGATGCTTATTGAC+AGG | 0.498174 | 2_1:+15217744 | Msa0197380:CDS |
| CAAATGATTATCAGGTTCAC+AGG | 0.500925 | 2_1:-15220655 | None:intergenic |
| ATGGGGACGTTATCCATAAT+GGG | 0.505059 | 2_1:+15217476 | Msa0197380:CDS |
| TATGAACTGTCCCACGGGCA+AGG | 0.509863 | 2_1:+15217216 | Msa0197380:CDS |
| ATCAACTACTCCTGCAAACA+AGG | 0.510737 | 2_1:-15217356 | None:intergenic |
| GAATTGATTGAGCTCTGCCC+TGG | 0.512619 | 2_1:+15219313 | Msa0197380:CDS |
| TTCAAGAATGAGAAAGCTAC+AGG | 0.519306 | 2_1:+15217845 | Msa0197380:CDS |
| AAGCCATGGAAACCTTCAAC+TGG | 0.519382 | 2_1:-15220606 | None:intergenic |
| CAAAATTCTCACGGCCAACC+AGG | 0.519978 | 2_1:+15216423 | Msa0197380:CDS |
| GAAAATTTGCTTAGATTCGA+AGG | 0.520232 | 2_1:+15216955 | Msa0197380:CDS |
| TGATAGCCATAGAAGAATAC+GGG | 0.522042 | 2_1:-15220716 | None:intergenic |
| ATATAATATCAGCAAAACCT+TGG | 0.523844 | 2_1:-15219441 | None:intergenic |
| TTACCAGTTGAAGGTTTCCA+TGG | 0.535996 | 2_1:+15220603 | Msa0197380:CDS |
| GAACGAAAGCCCCTTGCCCG+TGG | 0.536718 | 2_1:-15217227 | None:intergenic |
| ACAACAAGGCTTTCTCCACC+AGG | 0.542594 | 2_1:-15219331 | None:intergenic |
| TTGTACTATTTGTTACAAAG+AGG | 0.544434 | 2_1:+15217330 | Msa0197380:CDS |
| GAATGAGAAAGCTACAGGAC+CGG | 0.545119 | 2_1:+15217850 | Msa0197380:CDS |
| CTGCAAGCAAATATTGGAGA+TGG | 0.545154 | 2_1:+15219219 | Msa0197380:CDS |
| GGATGAGTGCCTTGAAGTCA+TGG | 0.545630 | 2_1:+15217417 | Msa0197380:CDS |
| GCTATCATGCAAGATCGCCT+TGG | 0.551704 | 2_1:+15220732 | Msa0197380:CDS |
| TTGATTCTCAGGCTTTGTAG+AGG | 0.558202 | 2_1:+15216781 | Msa0197380:CDS |
| TTGATTGAGCTCTGCCCTGG+TGG | 0.564545 | 2_1:+15219316 | Msa0197380:CDS |
| CTTTCATAATCCTAAAGGAA+AGG | 0.566374 | 2_1:+15217123 | Msa0197380:CDS |
| GACCGGGTGTACTGAGGGAG+TGG | 0.568062 | 2_1:+15217867 | Msa0197380:CDS |
| CATCCAAATTACAATTCTCG+TGG | 0.574253 | 2_1:+15216512 | Msa0197380:CDS |
| AATGCCAGCAGAGCAAAAGA+AGG | 0.574647 | 2_1:+15220548 | Msa0197380:CDS |
| ATCGGATGGTGCTTGATGCA+TGG | 0.574654 | 2_1:-15217296 | None:intergenic |
| AATGAGAAAGCTACAGGACC+GGG | 0.576399 | 2_1:+15217851 | Msa0197380:CDS |
| ACAAAGATGCAAAACTATCC+CGG | 0.576807 | 2_1:-15217078 | None:intergenic |
| ATTCTCTGATCATTTGAGGA+CGG | 0.580787 | 2_1:+15217273 | Msa0197380:CDS |
| GGATTTGGAAATTAATAGAG+TGG | 0.583185 | 2_1:-15220634 | None:intergenic |
| TGAACTGTCCCACGGGCAAG+GGG | 0.584289 | 2_1:+15217218 | Msa0197380:CDS |
| TCATTATATTATAATCCTGA+AGG | 0.585887 | 2_1:+15217504 | Msa0197380:CDS |
| AGATCGCAGATGAGTTGTTG+AGG | 0.588078 | 2_1:+15217179 | Msa0197380:CDS |
| AACGAAAGCCCCTTGCCCGT+GGG | 0.593129 | 2_1:-15217226 | None:intergenic |
| TTGAGTATGAACTGTCCCAC+GGG | 0.595898 | 2_1:+15217211 | Msa0197380:CDS |
| TACAGGACCGGGTGTACTGA+GGG | 0.597790 | 2_1:+15217862 | Msa0197380:CDS |
| AACCACTCCCTCAGTACACC+CGG | 0.598067 | 2_1:-15217869 | None:intergenic |
| TGAAGATAACTGATGATCAT+CGG | 0.600246 | 2_1:+15217630 | Msa0197380:intron |
| AAAACTCCAATAACACCTCA+AGG | 0.603943 | 2_1:-15217000 | None:intergenic |
| CTACAGGACCGGGTGTACTG+AGG | 0.605276 | 2_1:+15217861 | Msa0197380:CDS |
| ATAGAGTGGAATTCAAGCCA+TGG | 0.606874 | 2_1:-15220620 | None:intergenic |
| TGGCATGTCCAAATGACCAC+AGG | 0.609897 | 2_1:+15217939 | Msa0197380:CDS |
| GTTGCAGGGTGTTTACCTTG+AGG | 0.613279 | 2_1:+15216985 | Msa0197380:CDS |
| GTGAATTGCTTAGAAGGACA+GGG | 0.613382 | 2_1:+15217023 | Msa0197380:CDS |
| AGGTAGAGGAATTAGGACAC+AGG | 0.613656 | 2_1:+15219290 | Msa0197380:CDS |
| ACCGACCACCAAAATTCTCA+CGG | 0.619816 | 2_1:+15216414 | Msa0197380:CDS |
| GAACAGAGTCTCCGCGAATG+CGG | 0.631669 | 2_1:+15216667 | Msa0197380:CDS |
| GGTAGAGGAATTAGGACACA+GGG | 0.633632 | 2_1:+15219291 | Msa0197380:CDS |
| TTTGAGTATGAACTGTCCCA+CGG | 0.634776 | 2_1:+15217210 | Msa0197380:CDS |
| TTTGAAGAAGAAGGTGCACG+TGG | 0.640792 | 2_1:+15219102 | Msa0197380:CDS |
| AAAGGAAAGGTTATGCTTCG+GGG | 0.650365 | 2_1:+15217136 | Msa0197380:CDS |
| GTTCTTGAGTGATGATTCCA+AGG | 0.654533 | 2_1:-15220749 | None:intergenic |
| TGGTGGAGAAAGCCTTGTTG+TGG | 0.658729 | 2_1:+15219333 | Msa0197380:CDS |
| AAAATTCTCACGGCCAACCA+GGG | 0.679970 | 2_1:+15216424 | Msa0197380:CDS |
| TCAACTACTCCTGCAAACAA+GGG | 0.680763 | 2_1:-15217355 | None:intergenic |
| TGTTCTTACTATCCACAACA+AGG | 0.692481 | 2_1:-15219345 | None:intergenic |
| GGGACGTTATCCATAATGGG+TGG | 0.703329 | 2_1:+15217479 | Msa0197380:CDS |
| GATAGCCATAGAAGAATACG+GGG | 0.703482 | 2_1:-15220715 | None:intergenic |
| AGATAACTGATGATCATCGG+TGG | 0.706841 | 2_1:+15217633 | Msa0197380:intron |
| CAACAAGGCTTTCTCCACCA+GGG | 0.706861 | 2_1:-15219330 | None:intergenic |
| TGTTGTGGATAGTAAGAACA+GGG | 0.709105 | 2_1:+15219348 | Msa0197380:CDS |
| TTGAAGAAGAAGGTGCACGT+GGG | 0.718697 | 2_1:+15219103 | Msa0197380:CDS |
| GCTATGCCTAGATCACTGCA+GGG | 0.735867 | 2_1:+15217806 | Msa0197380:CDS |
| TGAGTGCCTTGAAGTCATGG+AGG | 0.788698 | 2_1:+15217420 | Msa0197380:CDS |
| ATAGCCATAGAAGAATACGG+GGG | 0.792007 | 2_1:-15220714 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTATTGATAAAAAATATA+CGG | - | chr2_1:15218773-15218792 | None:intergenic | 10.0% |
| !!! | AAATTTATGTTTCTTTTGAA+AGG | - | chr2_1:15218079-15218098 | None:intergenic | 15.0% |
| !! | TTTACAAAATGAAATTTCTT+AGG | + | chr2_1:15218117-15218136 | Msa0197380:intron | 15.0% |
| !! | CTTAAAATATTGAAAGTTAA+TGG | - | chr2_1:15218299-15218318 | None:intergenic | 15.0% |
| !!! | TATAAATTATATTGACTATG+AGG | + | chr2_1:15218880-15218899 | Msa0197380:intron | 15.0% |
| !!! | ATAAATTATATTGACTATGA+GGG | + | chr2_1:15218881-15218900 | Msa0197380:intron | 15.0% |
| !!! | GTTTTATTTTATAAGATTAG+AGG | - | chr2_1:15219873-15219892 | None:intergenic | 15.0% |
| !!! | TATTTTATCCAAAAAAAACT+TGG | + | chr2_1:15220511-15220530 | Msa0197380:intron | 15.0% |
| !!! | TTTTTCTGTTTTCATGTTTA+TGG | + | chr2_1:15216862-15216881 | Msa0197380:intron | 20.0% |
| !! | AGTACAATTCAAAAATTCAT+CGG | - | chr2_1:15217317-15217336 | None:intergenic | 20.0% |
| !! | TCATTATATTATAATCCTGA+AGG | + | chr2_1:15217504-15217523 | Msa0197380:CDS | 20.0% |
| !!! | AATATTTCATCTTTTAAGTC+GGG | - | chr2_1:15217722-15217741 | None:intergenic | 20.0% |
| !!! | CAATATTTCATCTTTTAAGT+CGG | - | chr2_1:15217723-15217742 | None:intergenic | 20.0% |
| !! | GACTTAAAAGATGAAATATT+GGG | + | chr2_1:15217722-15217741 | Msa0197380:CDS | 20.0% |
| !! | TTCTTAGGATAATAAAATGT+TGG | + | chr2_1:15218132-15218151 | Msa0197380:intron | 20.0% |
| !! | AAAAAAGAAGATTAAGTTTG+TGG | + | chr2_1:15218457-15218476 | Msa0197380:intron | 20.0% |
| !! | TATGTAACAATTGTGAAAAA+TGG | + | chr2_1:15218484-15218503 | Msa0197380:intron | 20.0% |
| !! | TTACACAATTAAGAGTTAAT+AGG | - | chr2_1:15218642-15218661 | None:intergenic | 20.0% |
| !!! | ATATTACTCTAGAAGATATT+CGG | + | chr2_1:15219170-15219189 | Msa0197380:CDS | 20.0% |
| !! | AAAATAAATAGTGAAGATGA+AGG | - | chr2_1:15219634-15219653 | None:intergenic | 20.0% |
| !! | ACTAAATTGTAACCAAAAAA+AGG | + | chr2_1:15219721-15219740 | Msa0197380:intron | 20.0% |
| !! | TCCTAAGAACTATTTAAATA+GGG | - | chr2_1:15219769-15219788 | None:intergenic | 20.0% |
| !! | TTCCTAAGAACTATTTAAAT+AGG | - | chr2_1:15219770-15219789 | None:intergenic | 20.0% |
| !! | TATTTAAATAGTTCTTAGGA+AGG | + | chr2_1:15219769-15219788 | Msa0197380:intron | 20.0% |
| !! | AGGCAATTATACAAAATATA+GGG | - | chr2_1:15220065-15220084 | None:intergenic | 20.0% |
| !! | AAGGCAATTATACAAAATAT+AGG | - | chr2_1:15220066-15220085 | None:intergenic | 20.0% |
| !! | ATAATTATGATTTCATGCAT+CGG | - | chr2_1:15220132-15220151 | None:intergenic | 20.0% |
| !! | TAATGACATAAAAAAGTCAT+AGG | - | chr2_1:15220347-15220366 | None:intergenic | 20.0% |
| !! | ATATTGTTTCTTTGATTCTC+AGG | + | chr2_1:15216770-15216789 | Msa0197380:CDS | 25.0% |
| ! | TTAAATTCTCTGATCATTTG+AGG | + | chr2_1:15217269-15217288 | Msa0197380:CDS | 25.0% |
| !! | TTGTACTATTTGTTACAAAG+AGG | + | chr2_1:15217330-15217349 | Msa0197380:CDS | 25.0% |
| ! | TATTAAGTTATTGGGCAAAA+TGG | + | chr2_1:15217396-15217415 | Msa0197380:CDS | 25.0% |
| !!! | ATATTTCATCTTTTAAGTCG+GGG | - | chr2_1:15217721-15217740 | None:intergenic | 25.0% |
| ! | CGACTTAAAAGATGAAATAT+TGG | + | chr2_1:15217721-15217740 | Msa0197380:CDS | 25.0% |
| ! | ACTTGTCATTGAAAAATACT+TGG | - | chr2_1:15218041-15218060 | None:intergenic | 25.0% |
| ! | GATACAGAAATAAACTATTG+AGG | - | chr2_1:15218242-15218261 | None:intergenic | 25.0% |
| !! | AATTTTCTATAAAGCCTCAA+TGG | - | chr2_1:15218928-15218947 | None:intergenic | 25.0% |
| !! | TATTACTCTAGAAGATATTC+GGG | + | chr2_1:15219171-15219190 | Msa0197380:CDS | 25.0% |
| !!! | TATATTGATTCAGATGCATT+AGG | + | chr2_1:15219250-15219269 | Msa0197380:CDS | 25.0% |
| ! | ATGTAATATCTGCTTAGATA+TGG | - | chr2_1:15219416-15219435 | None:intergenic | 25.0% |
| ! | TATAATATCAGCAAAACCTT+GGG | - | chr2_1:15219443-15219462 | None:intergenic | 25.0% |
| ! | ATATAATATCAGCAAAACCT+TGG | - | chr2_1:15219444-15219463 | None:intergenic | 25.0% |
| !!! | TTAGTTTGTTCTCCTTTTTT+TGG | - | chr2_1:15219736-15219755 | None:intergenic | 25.0% |
| ! | CTAAGAACTATTTAAATAGG+GGG | - | chr2_1:15219767-15219786 | None:intergenic | 25.0% |
| ! | CCTAAGAACTATTTAAATAG+GGG | - | chr2_1:15219768-15219787 | None:intergenic | 25.0% |
| !! | TTTTATAAGATTAGAGGACA+TGG | - | chr2_1:15219867-15219886 | None:intergenic | 25.0% |
| !! | AGAGAAGTGAATTTTATAAG+TGG | - | chr2_1:15219938-15219957 | None:intergenic | 25.0% |
| ! | AACAAAACCATGTTACTATT+TGG | - | chr2_1:15220108-15220127 | None:intergenic | 25.0% |
| ! | ACACACTTCTTAAAAAGATT+TGG | - | chr2_1:15220174-15220193 | None:intergenic | 25.0% |
| !!! | ATCTTTTTAAGAAGTGTGTT+CGG | + | chr2_1:15220175-15220194 | Msa0197380:intron | 25.0% |
| ! | TTTCGAATTCATTATAACAC+TGG | - | chr2_1:15220278-15220297 | None:intergenic | 25.0% |
| ! | TTGATGTAGAATCGGAATTT+TGG | - | chr2_1:15216614-15216633 | None:intergenic | 30.0% |
| ATCAATCGTTGATGTAGAAT+CGG | - | chr2_1:15216622-15216641 | None:intergenic | 30.0% | |
| CATCAACGATTGATATATGA+AGG | + | chr2_1:15216628-15216647 | Msa0197380:intron | 30.0% | |
| AAACGATGCAAATCTTCAAT+TGG | + | chr2_1:15216696-15216715 | Msa0197380:CDS | 30.0% | |
| !!! | TGTGTTGCTTTCAACATTTT+AGG | - | chr2_1:15216748-15216767 | None:intergenic | 30.0% |
| !! | TATTGCTGATTCTGTGATTA+AGG | + | chr2_1:15216925-15216944 | Msa0197380:CDS | 30.0% |
| ! | GAAAATTTGCTTAGATTCGA+AGG | + | chr2_1:15216955-15216974 | Msa0197380:CDS | 30.0% |
| !! | AGTTTTGTGAATTGCTTAGA+AGG | + | chr2_1:15217017-15217036 | Msa0197380:CDS | 30.0% |
| !!! | ATCATCTGTATGTTTTTTGC+CGG | + | chr2_1:15217059-15217078 | Msa0197380:CDS | 30.0% |
| CTTTCATAATCCTAAAGGAA+AGG | + | chr2_1:15217123-15217142 | Msa0197380:CDS | 30.0% | |
| CAATTCAAAAATTCATCGGA+TGG | - | chr2_1:15217313-15217332 | None:intergenic | 30.0% | |
| GTTAACAAGAAACGTGAAAA+AGG | + | chr2_1:15217451-15217470 | Msa0197380:CDS | 30.0% | |
| AGATGTGAAATAATACCTTC+AGG | - | chr2_1:15217522-15217541 | None:intergenic | 30.0% | |
| TGAAGATAACTGATGATCAT+CGG | + | chr2_1:15217630-15217649 | Msa0197380:intron | 30.0% | |
| TATTAGGAAAAAATCTCCTG+TGG | - | chr2_1:15217958-15217977 | None:intergenic | 30.0% | |
| !!! | AGGAGATTTTTTCCTAATAC+TGG | + | chr2_1:15217959-15217978 | Msa0197380:CDS | 30.0% |
| AAACAAAACTCACCAGTATT+AGG | - | chr2_1:15217974-15217993 | None:intergenic | 30.0% | |
| TGAAAAATACTTGGAAAGCA+TGG | - | chr2_1:15218032-15218051 | None:intergenic | 30.0% | |
| AAGAAAAAAGATGTTCCACA+AGG | - | chr2_1:15218330-15218349 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTCTTCCTGAATAG+AGG | + | chr2_1:15218339-15218358 | Msa0197380:intron | 30.0% |
| !!! | CTTTTTTCTTCCTGAATAGA+GGG | + | chr2_1:15218340-15218359 | Msa0197380:intron | 30.0% |
| ACTTTAACACTTCTGTCAAA+AGG | - | chr2_1:15218597-15218616 | None:intergenic | 30.0% | |
| TTAAGAGTTAATAGGTGAAC+TGG | - | chr2_1:15218634-15218653 | None:intergenic | 30.0% | |
| AGTACCTAACATTAGCAAAT+GGG | - | chr2_1:15218710-15218729 | None:intergenic | 30.0% | |
| TAGTACCTAACATTAGCAAA+TGG | - | chr2_1:15218711-15218730 | None:intergenic | 30.0% | |
| TTTGCTAATGTTAGGTACTA+AGG | + | chr2_1:15218711-15218730 | Msa0197380:intron | 30.0% | |
| !!! | TCGTGTATTTTTCAAGCAAT+TGG | + | chr2_1:15219138-15219157 | Msa0197380:CDS | 30.0% |
| TTGCAGCTACTATACATTAT+AGG | - | chr2_1:15219205-15219224 | None:intergenic | 30.0% | |
| !! | TAGACCATGAAGATTTTGAT+TGG | + | chr2_1:15219494-15219513 | Msa0197380:CDS | 30.0% |
| !!! | ATTTTGATTGGATGCTTCAT+GGG | + | chr2_1:15219506-15219525 | Msa0197380:CDS | 30.0% |
| ATGACATTTCTGTTGAAGAT+TGG | + | chr2_1:15219536-15219555 | Msa0197380:CDS | 30.0% | |
| TATGTAGGATACTGATCTTA+TGG | + | chr2_1:15219592-15219611 | Msa0197380:intron | 30.0% | |
| ATGTAGGATACTGATCTTAT+GGG | + | chr2_1:15219593-15219612 | Msa0197380:intron | 30.0% | |
| CCAAAAAATGCAAGAAAAGA+GGG | - | chr2_1:15219659-15219678 | None:intergenic | 30.0% | |
| ACCAAAAAATGCAAGAAAAG+AGG | - | chr2_1:15219660-15219679 | None:intergenic | 30.0% | |
| CCCCTATTTAAATAGTTCTT+AGG | + | chr2_1:15219765-15219784 | Msa0197380:intron | 30.0% | |
| AACAATTCTGTCATGGAAAT+TGG | - | chr2_1:15219895-15219914 | None:intergenic | 30.0% | |
| !!! | AGTGGTTTTATTTTGAAACG+AGG | - | chr2_1:15219920-15219939 | None:intergenic | 30.0% |
| ATCAAAACTTGAACCTAACA+CGG | - | chr2_1:15220039-15220058 | None:intergenic | 30.0% | |
| ! | GTTACTATTTGGAAGCATAA+AGG | - | chr2_1:15220097-15220116 | None:intergenic | 30.0% |
| TATGCTTCCAAATAGTAACA+TGG | + | chr2_1:15220098-15220117 | Msa0197380:intron | 30.0% | |
| !!! | GTTTTAACTAGATTCTGCAA+AGG | - | chr2_1:15220256-15220275 | None:intergenic | 30.0% |
| TGTTGAAACTTTCACATTCT+AGG | - | chr2_1:15220303-15220322 | None:intergenic | 30.0% | |
| ACTCATCATGTAAATTTGCA+AGG | + | chr2_1:15220455-15220474 | Msa0197380:intron | 30.0% | |
| !!! | ACAATCTGCCAAGTTTTTTT+TGG | - | chr2_1:15220522-15220541 | None:intergenic | 30.0% |
| AAAAAACTTGGCAGATTGTT+AGG | + | chr2_1:15220523-15220542 | Msa0197380:intron | 30.0% | |
| GGATTTGGAAATTAATAGAG+TGG | - | chr2_1:15220637-15220656 | None:intergenic | 30.0% | |
| TAAAAACATGTGTGAGATGA+GGG | - | chr2_1:15220681-15220700 | None:intergenic | 30.0% | |
| ATGATAGCCATAGAAGAATA+CGG | - | chr2_1:15220720-15220739 | None:intergenic | 30.0% | |
| !! | TCTGAGACCTTTTTCATCTT+TGG | - | chr2_1:15216484-15216503 | None:intergenic | 35.0% |
| CATCCAAATTACAATTCTCG+TGG | + | chr2_1:15216512-15216531 | Msa0197380:CDS | 35.0% | |
| GTTCCACGAGAATTGTAATT+TGG | - | chr2_1:15216518-15216537 | None:intergenic | 35.0% | |
| GATGCAAATCTTCAATTGGT+TGG | + | chr2_1:15216700-15216719 | Msa0197380:CDS | 35.0% | |
| CAAATCTTCAATTGGTTGGA+CGG | + | chr2_1:15216704-15216723 | Msa0197380:CDS | 35.0% | |
| TATGGAAATTCCTTCACTGT+TGG | + | chr2_1:15216880-15216899 | Msa0197380:intron | 35.0% | |
| ! | TGTTTACCTTGAGGTGTTAT+TGG | + | chr2_1:15216994-15217013 | Msa0197380:CDS | 35.0% |
| AAAACTCCAATAACACCTCA+AGG | - | chr2_1:15217003-15217022 | None:intergenic | 35.0% | |
| !!! | TCATCTGTATGTTTTTTGCC+GGG | + | chr2_1:15217060-15217079 | Msa0197380:CDS | 35.0% |
| ACAAAGATGCAAAACTATCC+CGG | - | chr2_1:15217081-15217100 | None:intergenic | 35.0% | |
| !! | GCTAGCTTTCATAATCCTAA+AGG | + | chr2_1:15217118-15217137 | Msa0197380:CDS | 35.0% |
| CTAAAGGAAAGGTTATGCTT+CGG | + | chr2_1:15217134-15217153 | Msa0197380:CDS | 35.0% | |
| TAAAGGAAAGGTTATGCTTC+GGG | + | chr2_1:15217135-15217154 | Msa0197380:CDS | 35.0% | |
| ! | AGATGAGTTGTTGAGGTTTT+TGG | + | chr2_1:15217186-15217205 | Msa0197380:CDS | 35.0% |
| ATTCTCTGATCATTTGAGGA+CGG | + | chr2_1:15217273-15217292 | Msa0197380:CDS | 35.0% | |
| AAGAAACGTGAAAAAGGTGA+TGG | + | chr2_1:15217457-15217476 | Msa0197380:CDS | 35.0% | |
| AGAAACGTGAAAAAGGTGAT+GGG | + | chr2_1:15217458-15217477 | Msa0197380:CDS | 35.0% | |
| TATAATGAGACCACCCATTA+TGG | - | chr2_1:15217492-15217511 | None:intergenic | 35.0% | |
| TGCTACCTCATATGATTGTT+CGG | + | chr2_1:15217603-15217622 | Msa0197380:intron | 35.0% | |
| !! | TTGTGACTGATTTTGAATCC+AGG | + | chr2_1:15217672-15217691 | Msa0197380:CDS | 35.0% |
| GATATGAGATGCTTATTGAC+AGG | + | chr2_1:15217744-15217763 | Msa0197380:CDS | 35.0% | |
| TTCAAGAATGAGAAAGCTAC+AGG | + | chr2_1:15217845-15217864 | Msa0197380:CDS | 35.0% | |
| ! | TCCAAACAATGCTCTTTTTG+TGG | + | chr2_1:15217919-15217938 | Msa0197380:CDS | 35.0% |
| AAAAATCTCCTGTGGTCATT+TGG | - | chr2_1:15217950-15217969 | None:intergenic | 35.0% | |
| ATTGTGAAGTCCATGTTCAA+AGG | + | chr2_1:15218174-15218193 | Msa0197380:intron | 35.0% | |
| ! | TAGTCTTGAACCTTTGAACA+TGG | - | chr2_1:15218187-15218206 | None:intergenic | 35.0% |
| ATCAGTAGCAATGATTCATC+TGG | + | chr2_1:15218259-15218278 | Msa0197380:intron | 35.0% | |
| TCAGTAGCAATGATTCATCT+GGG | + | chr2_1:15218260-15218279 | Msa0197380:intron | 35.0% | |
| !! | ATGATTCATCTGGGTTTTAG+AGG | + | chr2_1:15218269-15218288 | Msa0197380:intron | 35.0% |
| AAAAAAGATGTTCCACAAGG+AGG | - | chr2_1:15218327-15218346 | None:intergenic | 35.0% | |
| AACAATTGAGAGACTTCCAA+TGG | - | chr2_1:15218378-15218397 | None:intergenic | 35.0% | |
| GGGATATGAAGTTCTATTCA+AGG | - | chr2_1:15218523-15218542 | None:intergenic | 35.0% | |
| TTGAAATACCTAAGACAGCT+GGG | - | chr2_1:15218543-15218562 | None:intergenic | 35.0% | |
| TGTTAAAGTTGAACCGTGAT+GGG | + | chr2_1:15218608-15218627 | Msa0197380:intron | 35.0% | |
| ! | AGTTCCCATTTGCTAATGTT+AGG | + | chr2_1:15218703-15218722 | Msa0197380:intron | 35.0% |
| ! | TGCATGTTGGTTAGATTAGT+TGG | - | chr2_1:15218965-15218984 | None:intergenic | 35.0% |
| TGTAAAAGTTCGTTGCATGT+TGG | - | chr2_1:15218978-15218997 | None:intergenic | 35.0% | |
| !! | TGCATTAGCTTTGAAGAAGA+AGG | + | chr2_1:15219093-15219112 | Msa0197380:CDS | 35.0% |
| !!! | GTATTTTTCAAGCAATTGGC+TGG | + | chr2_1:15219142-15219161 | Msa0197380:CDS | 35.0% |
| TAGTAGCTGCAAGCAAATAT+TGG | + | chr2_1:15219213-15219232 | Msa0197380:CDS | 35.0% | |
| TGTTCTTACTATCCACAACA+AGG | - | chr2_1:15219348-15219367 | None:intergenic | 35.0% | |
| TTGTTGTGGATAGTAAGAAC+AGG | + | chr2_1:15219347-15219366 | Msa0197380:CDS | 35.0% | |
| TGTTGTGGATAGTAAGAACA+GGG | + | chr2_1:15219348-15219367 | Msa0197380:CDS | 35.0% | |
| ! | CAGATATTACATTTTGCCCA+AGG | + | chr2_1:15219424-15219443 | Msa0197380:CDS | 35.0% |
| GCATCCAATCAAAATCTTCA+TGG | - | chr2_1:15219501-15219520 | None:intergenic | 35.0% | |
| !!! | GATTTTGATTGGATGCTTCA+TGG | + | chr2_1:15219505-15219524 | Msa0197380:CDS | 35.0% |
| CATTTCTGTTGAAGATTGGA+AGG | + | chr2_1:15219540-15219559 | Msa0197380:CDS | 35.0% | |
| ! | CATACCAAGTATCTTGGTTT+TGG | + | chr2_1:15219565-15219584 | Msa0197380:CDS | 35.0% |
| ! | CCCTCTTTTCTTGCATTTTT+TGG | + | chr2_1:15219656-15219675 | Msa0197380:intron | 35.0% |
| GATGCAGGAGTAGATTTATT+GGG | + | chr2_1:15219791-15219810 | Msa0197380:intron | 35.0% | |
| GCAATACATATCTTGCTACA+TGG | + | chr2_1:15219813-15219832 | Msa0197380:intron | 35.0% | |
| TTGCTACATGGTTATCTCTA+AGG | + | chr2_1:15219825-15219844 | Msa0197380:intron | 35.0% | |
| TGACTGATGATCAGGAAATA+AGG | - | chr2_1:15219961-15219980 | None:intergenic | 35.0% | |
| TCAAAACTTGAACCTAACAC+GGG | - | chr2_1:15220038-15220057 | None:intergenic | 35.0% | |
| ATAGGAACTTACTATGCAGA+TGG | - | chr2_1:15220329-15220348 | None:intergenic | 35.0% | |
| TGCAGTTATTGAAGTCTTTC+TGG | + | chr2_1:15220417-15220436 | Msa0197380:intron | 35.0% | |
| GTGAAACATTTACCAGTTGA+AGG | + | chr2_1:15220594-15220613 | Msa0197380:CDS | 35.0% | |
| ATTATCAGGTTCACAGGATT+TGG | - | chr2_1:15220652-15220671 | None:intergenic | 35.0% | |
| CAAATGATTATCAGGTTCAC+AGG | - | chr2_1:15220658-15220677 | None:intergenic | 35.0% | |
| GTAAAAACATGTGTGAGATG+AGG | - | chr2_1:15220682-15220701 | None:intergenic | 35.0% | |
| TGATAGCCATAGAAGAATAC+GGG | - | chr2_1:15220719-15220738 | None:intergenic | 35.0% | |
| !!! | AGGATGTGAGTTTTGAGAAG+TGG | - | chr2_1:15216456-15216475 | None:intergenic | 40.0% |
| !! | CTTTTTCATCTTTGGAGACG+AGG | - | chr2_1:15216476-15216495 | None:intergenic | 40.0% |
| CTCGTCTCCAAAGATGAAAA+AGG | + | chr2_1:15216474-15216493 | Msa0197380:CDS | 40.0% | |
| ! | TTGATTCTCAGGCTTTGTAG+AGG | + | chr2_1:15216781-15216800 | Msa0197380:CDS | 40.0% |
| TAAAGAGCTACCAACAGTGA+AGG | - | chr2_1:15216893-15216912 | None:intergenic | 40.0% | |
| TTCGAAGGACAAAAAGTTGC+AGG | + | chr2_1:15216970-15216989 | Msa0197380:CDS | 40.0% | |
| TCGAAGGACAAAAAGTTGCA+GGG | + | chr2_1:15216971-15216990 | Msa0197380:CDS | 40.0% | |
| TGTGAATTGCTTAGAAGGAC+AGG | + | chr2_1:15217022-15217041 | Msa0197380:CDS | 40.0% | |
| GTGAATTGCTTAGAAGGACA+GGG | + | chr2_1:15217023-15217042 | Msa0197380:CDS | 40.0% | |
| CGAAGCATAACCTTTCCTTT+AGG | - | chr2_1:15217136-15217155 | None:intergenic | 40.0% | |
| AAAGGAAAGGTTATGCTTCG+GGG | + | chr2_1:15217136-15217155 | Msa0197380:CDS | 40.0% | |
| TTTGAGTATGAACTGTCCCA+CGG | + | chr2_1:15217210-15217229 | Msa0197380:CDS | 40.0% | |
| ! | GCTTTCGTTCAACGTTGTTT+TGG | + | chr2_1:15217240-15217259 | Msa0197380:CDS | 40.0% |
| TCAACTACTCCTGCAAACAA+GGG | - | chr2_1:15217358-15217377 | None:intergenic | 40.0% | |
| ATCAACTACTCCTGCAAACA+AGG | - | chr2_1:15217359-15217378 | None:intergenic | 40.0% | |
| GAAACGTGAAAAAGGTGATG+GGG | + | chr2_1:15217459-15217478 | Msa0197380:CDS | 40.0% | |
| ATGGGGACGTTATCCATAAT+GGG | + | chr2_1:15217476-15217495 | Msa0197380:CDS | 40.0% | |
| ACGTACCGAACAATCATATG+AGG | - | chr2_1:15217611-15217630 | None:intergenic | 40.0% | |
| AGATAACTGATGATCATCGG+TGG | + | chr2_1:15217633-15217652 | Msa0197380:intron | 40.0% | |
| !! | TGACTGATTTTGAATCCAGG+AGG | + | chr2_1:15217675-15217694 | Msa0197380:CDS | 40.0% |
| !!! | TTTTGAATCCAGGAGGCATT+TGG | + | chr2_1:15217682-15217701 | Msa0197380:CDS | 40.0% |
| ! | TATTGACAGGTCTCAGGTTT+TGG | + | chr2_1:15217757-15217776 | Msa0197380:CDS | 40.0% |
| ACTGCAGGGTGATCTATTTA+TGG | + | chr2_1:15217820-15217839 | Msa0197380:CDS | 40.0% | |
| !! | GCCACAAAAAGAGCATTGTT+TGG | - | chr2_1:15217923-15217942 | None:intergenic | 40.0% |
| ! | AAATGTTGGCCTAGTGTTCA+AGG | + | chr2_1:15218146-15218165 | Msa0197380:intron | 40.0% |
| ! | AATGTTGGCCTAGTGTTCAA+GGG | + | chr2_1:15218147-15218166 | Msa0197380:intron | 40.0% |
| !! | TTTTAAGAGACTCCTCCTTG+TGG | + | chr2_1:15218312-15218331 | Msa0197380:intron | 40.0% |
| TTCTTCCTGAATAGAGGGAA+TGG | + | chr2_1:15218345-15218364 | Msa0197380:intron | 40.0% | |
| GTTGAAATACCTAAGACAGC+TGG | - | chr2_1:15218544-15218563 | None:intergenic | 40.0% | |
| CTGTCTTAGGTATTTCAACG+AGG | + | chr2_1:15218545-15218564 | Msa0197380:intron | 40.0% | |
| GTGTTAAAGTTGAACCGTGA+TGG | + | chr2_1:15218607-15218626 | Msa0197380:intron | 40.0% | |
| GTTACATCAAGTAGCCATTG+AGG | + | chr2_1:15218911-15218930 | Msa0197380:intron | 40.0% | |
| ! | CAGAGAAGATGAAGTACCTT+AGG | - | chr2_1:15219063-15219082 | None:intergenic | 40.0% |
| ! | CTAAGGTACTTCATCTTCTC+TGG | + | chr2_1:15219061-15219080 | Msa0197380:CDS | 40.0% |
| CTGCAAGCAAATATTGGAGA+TGG | + | chr2_1:15219219-15219238 | Msa0197380:CDS | 40.0% | |
| ! | AGGACTGACATTTTCTACAG+AGG | + | chr2_1:15219270-15219289 | Msa0197380:CDS | 40.0% |
| ! | GACATTTTCTACAGAGGTAG+AGG | + | chr2_1:15219276-15219295 | Msa0197380:CDS | 40.0% |
| TCTACAGAGGTAGAGGAATT+AGG | + | chr2_1:15219283-15219302 | Msa0197380:CDS | 40.0% | |
| AAGGCACATACCAAGTATCT+TGG | + | chr2_1:15219559-15219578 | Msa0197380:CDS | 40.0% | |
| CCTTCCAAAACCAAGATACT+TGG | - | chr2_1:15219572-15219591 | None:intergenic | 40.0% | |
| !!! | CCAAGTATCTTGGTTTTGGA+AGG | + | chr2_1:15219569-15219588 | Msa0197380:CDS | 40.0% |
| !!! | CTTGGTTTTGGAAGGTATGT+AGG | + | chr2_1:15219577-15219596 | Msa0197380:intron | 40.0% |
| ATAGTTCTTAGGAAGGATGC+AGG | + | chr2_1:15219776-15219795 | Msa0197380:intron | 40.0% | |
| GGATGCAGGAGTAGATTTAT+TGG | + | chr2_1:15219790-15219809 | Msa0197380:intron | 40.0% | |
| AAGCATAAAGGAACTGAGGA+AGG | - | chr2_1:15220085-15220104 | None:intergenic | 40.0% | |
| ! | TTGGAAGCATAAAGGAACTG+AGG | - | chr2_1:15220089-15220108 | None:intergenic | 40.0% |
| AGGTAAATACGACTGCACTA+TGG | - | chr2_1:15220205-15220224 | None:intergenic | 40.0% | |
| ! | ACTGCACTATGGTAATGCAA+AGG | - | chr2_1:15220225-15220244 | None:intergenic | 40.0% |
| AGGTAAATACGACTGCACTA+TGG | - | chr2_1:15220205-15220224 | None:intergenic | 40.0% | |
| ! | AGAAGGTTCGTCTGTTCTTT+TGG | + | chr2_1:15220565-15220584 | Msa0197380:CDS | 40.0% |
| TTACCAGTTGAAGGTTTCCA+TGG | + | chr2_1:15220603-15220622 | Msa0197380:CDS | 40.0% | |
| ATAGAGTGGAATTCAAGCCA+TGG | - | chr2_1:15220623-15220642 | None:intergenic | 40.0% | |
| GATGAGGGCAAATGATTATC+AGG | - | chr2_1:15220666-15220685 | None:intergenic | 40.0% | |
| ATAGCCATAGAAGAATACGG+GGG | - | chr2_1:15220717-15220736 | None:intergenic | 40.0% | |
| GATAGCCATAGAAGAATACG+GGG | - | chr2_1:15220718-15220737 | None:intergenic | 40.0% | |
| GTTCTTGAGTGATGATTCCA+AGG | - | chr2_1:15220752-15220771 | None:intergenic | 40.0% | |
| ACCGACCACCAAAATTCTCA+CGG | + | chr2_1:15216414-15216433 | Msa0197380:CDS | 45.0% | |
| AAAATTCTCACGGCCAACCA+GGG | + | chr2_1:15216424-15216443 | Msa0197380:CDS | 45.0% | |
| ! | TTGAGAAGTGGTTTTTGCCC+TGG | - | chr2_1:15216444-15216463 | None:intergenic | 45.0% |
| TTCAATTGGTTGGACGGTTG+AGG | + | chr2_1:15216710-15216729 | Msa0197380:CDS | 45.0% | |
| ! | CAGGCTTTGTAGAGGTGAAT+CGG | + | chr2_1:15216789-15216808 | Msa0197380:CDS | 45.0% |
| TGTAGAGGTGAATCGGTGAT+TGG | + | chr2_1:15216796-15216815 | Msa0197380:CDS | 45.0% | |
| GCATCTTTGTTGACGCTTGT+TGG | + | chr2_1:15217091-15217110 | Msa0197380:CDS | 45.0% | |
| AGATCGCAGATGAGTTGTTG+AGG | + | chr2_1:15217179-15217198 | Msa0197380:CDS | 45.0% | |
| TTGAGTATGAACTGTCCCAC+GGG | + | chr2_1:15217211-15217230 | Msa0197380:CDS | 45.0% | |
| ! | AAAGAGGATCCCTTGTTTGC+AGG | + | chr2_1:15217346-15217365 | Msa0197380:CDS | 45.0% |
| AGCAATCCTCCATGACTTCA+AGG | - | chr2_1:15217429-15217448 | None:intergenic | 45.0% | |
| TGAAGTCATGGAGGATTGCT+TGG | + | chr2_1:15217429-15217448 | Msa0197380:CDS | 45.0% | |
| GATGGGGACGTTATCCATAA+TGG | + | chr2_1:15217475-15217494 | Msa0197380:CDS | 45.0% | |
| CACATCTCCAAGTTCTACAG+CGG | + | chr2_1:15217535-15217554 | Msa0197380:intron | 45.0% | |
| ! | CGGTGCACAAGAACAGTTTT+GGG | + | chr2_1:15217555-15217574 | Msa0197380:intron | 45.0% |
| ! | GGTGCACAAGAACAGTTTTG+GGG | + | chr2_1:15217556-15217575 | Msa0197380:intron | 45.0% |
| GATGCTTATTGACAGGTCTC+AGG | + | chr2_1:15217751-15217770 | Msa0197380:CDS | 45.0% | |
| GAATGAGAAAGCTACAGGAC+CGG | + | chr2_1:15217850-15217869 | Msa0197380:CDS | 45.0% | |
| AATGAGAAAGCTACAGGACC+GGG | + | chr2_1:15217851-15217870 | Msa0197380:CDS | 45.0% | |
| !!! | ACTGAGGGAGTGGTTTGTTT+TGG | + | chr2_1:15217877-15217896 | Msa0197380:CDS | 45.0% |
| !!! | GTGGTTTGTTTTGGTGTGTC+AGG | + | chr2_1:15217886-15217905 | Msa0197380:CDS | 45.0% |
| CAATTACGCCCTTGAACACT+AGG | - | chr2_1:15218158-15218177 | None:intergenic | 45.0% | |
| AGGATCCATTCCCTCTATTC+AGG | - | chr2_1:15218353-15218372 | None:intergenic | 45.0% | |
| TTGAGAGACTTCCAATGGAG+AGG | - | chr2_1:15218373-15218392 | None:intergenic | 45.0% | |
| CTTCATATCCCAGCTGTCTT+AGG | + | chr2_1:15218532-15218551 | Msa0197380:intron | 45.0% | |
| AGATGCTGCAGACAAGTAGA+AGG | - | chr2_1:15219023-15219042 | None:intergenic | 45.0% | |
| CTACTTGTCTGCAGCATCTA+TGG | + | chr2_1:15219024-15219043 | Msa0197380:intron | 45.0% | |
| TGGTAAATGCTCTGCACCTA+AGG | + | chr2_1:15219044-15219063 | Msa0197380:CDS | 45.0% | |
| ! | TTTGAAGAAGAAGGTGCACG+TGG | + | chr2_1:15219102-15219121 | Msa0197380:CDS | 45.0% |
| ! | TTGAAGAAGAAGGTGCACGT+GGG | + | chr2_1:15219103-15219122 | Msa0197380:CDS | 45.0% |
| AGGTAGAGGAATTAGGACAC+AGG | + | chr2_1:15219290-15219309 | Msa0197380:CDS | 45.0% | |
| GGTAGAGGAATTAGGACACA+GGG | + | chr2_1:15219291-15219310 | Msa0197380:CDS | 45.0% | |
| TTAGAGGACATGGAACACAG+CGG | - | chr2_1:15219857-15219876 | None:intergenic | 45.0% | |
| CGAGGCAAACAATTCTGTCA+TGG | - | chr2_1:15219902-15219921 | None:intergenic | 45.0% | |
| CTCTAGCATGACTGATGATC+AGG | - | chr2_1:15219969-15219988 | None:intergenic | 45.0% | |
| AATGCCAGCAGAGCAAAAGA+AGG | + | chr2_1:15220548-15220567 | Msa0197380:CDS | 45.0% | |
| AAGCCATGGAAACCTTCAAC+TGG | - | chr2_1:15220609-15220628 | None:intergenic | 45.0% | |
| CTTTCCCCCGTATTCTTCTA+TGG | + | chr2_1:15220710-15220729 | Msa0197380:CDS | 45.0% | |
| GAACACATCAGCTGCAGTTT+CGG | + | chr2_1:15220768-15220787 | Msa0197380:CDS | 45.0% | |
| !! | TATTATATTTATTAAGTTAT+TGG | + | chr2_1:15217387-15217406 | Msa0197380:CDS | 5.0% |
| !! | ATTATATTTATTAAGTTATT+GGG | + | chr2_1:15217388-15217407 | Msa0197380:CDS | 5.0% |
| !! | GCCGTGAGAATTTTGGTGGT+CGG | - | chr2_1:15216418-15216437 | None:intergenic | 50.0% |
| ! | GTTGGCCGTGAGAATTTTGG+TGG | - | chr2_1:15216422-15216441 | None:intergenic | 50.0% |
| !! | CTGGTTGGCCGTGAGAATTT+TGG | - | chr2_1:15216425-15216444 | None:intergenic | 50.0% |
| CAAAATTCTCACGGCCAACC+AGG | + | chr2_1:15216423-15216442 | Msa0197380:CDS | 50.0% | |
| ! | GAAGTGGTTTTTGCCCTGGT+TGG | - | chr2_1:15216440-15216459 | None:intergenic | 50.0% |
| ! | GTTGCAGGGTGTTTACCTTG+AGG | + | chr2_1:15216985-15217004 | Msa0197380:CDS | 50.0% |
| ATCGGATGGTGCTTGATGCA+TGG | - | chr2_1:15217299-15217318 | None:intergenic | 50.0% | |
| GGATGAGTGCCTTGAAGTCA+TGG | + | chr2_1:15217417-15217436 | Msa0197380:CDS | 50.0% | |
| TGAGTGCCTTGAAGTCATGG+AGG | + | chr2_1:15217420-15217439 | Msa0197380:CDS | 50.0% | |
| ! | GGGACGTTATCCATAATGGG+TGG | + | chr2_1:15217479-15217498 | Msa0197380:CDS | 50.0% |
| TTGTGCACCGCTGTAGAACT+TGG | - | chr2_1:15217545-15217564 | None:intergenic | 50.0% | |
| ! | GCGGTGCACAAGAACAGTTT+TGG | + | chr2_1:15217554-15217573 | Msa0197380:intron | 50.0% |
| CATCATCACCAAATGCCTCC+TGG | - | chr2_1:15217693-15217712 | None:intergenic | 50.0% | |
| AGCTATGCCTAGATCACTGC+AGG | + | chr2_1:15217805-15217824 | Msa0197380:CDS | 50.0% | |
| GCTATGCCTAGATCACTGCA+GGG | + | chr2_1:15217806-15217825 | Msa0197380:CDS | 50.0% | |
| AGATCACCCTGCAGTGATCT+AGG | - | chr2_1:15217815-15217834 | None:intergenic | 50.0% | |
| TGGCATGTCCAAATGACCAC+AGG | + | chr2_1:15217939-15217958 | Msa0197380:CDS | 50.0% | |
| AGGGAATGGATCCTCTCCAT+TGG | + | chr2_1:15218359-15218378 | Msa0197380:intron | 50.0% | |
| ATAGGTGAACTGGCCCATCA+CGG | - | chr2_1:15218624-15218643 | None:intergenic | 50.0% | |
| GAATTGATTGAGCTCTGCCC+TGG | + | chr2_1:15219313-15219332 | Msa0197380:CDS | 50.0% | |
| CAACAAGGCTTTCTCCACCA+GGG | - | chr2_1:15219333-15219352 | None:intergenic | 50.0% | |
| ACAACAAGGCTTTCTCCACC+AGG | - | chr2_1:15219334-15219353 | None:intergenic | 50.0% | |
| !! | TGGTGGAGAAAGCCTTGTTG+TGG | + | chr2_1:15219333-15219352 | Msa0197380:CDS | 50.0% |
| TAGAGGACATGGAACACAGC+GGG | - | chr2_1:15219856-15219875 | None:intergenic | 50.0% | |
| TTGAACCTAACACGGGCACA+CGG | - | chr2_1:15220031-15220050 | None:intergenic | 50.0% | |
| ! | CGAACCTTCTTTTGCTCTGC+TGG | - | chr2_1:15220555-15220574 | None:intergenic | 50.0% |
| GCTATCATGCAAGATCGCCT+TGG | + | chr2_1:15220732-15220751 | Msa0197380:CDS | 50.0% | |
| GAACAGAGTCTCCGCGAATG+CGG | + | chr2_1:15216667-15216686 | Msa0197380:CDS | 55.0% | |
| ! | CGTTTTCGATGCCGCATTCG+CGG | - | chr2_1:15216681-15216700 | None:intergenic | 55.0% |
| TATGAACTGTCCCACGGGCA+AGG | + | chr2_1:15217216-15217235 | Msa0197380:CDS | 55.0% | |
| ATGAACTGTCCCACGGGCAA+GGG | + | chr2_1:15217217-15217236 | Msa0197380:CDS | 55.0% | |
| TACAGGACCGGGTGTACTGA+GGG | + | chr2_1:15217862-15217881 | Msa0197380:CDS | 55.0% | |
| AACCACTCCCTCAGTACACC+CGG | - | chr2_1:15217872-15217891 | None:intergenic | 55.0% | |
| TTGATTGAGCTCTGCCCTGG+TGG | + | chr2_1:15219316-15219335 | Msa0197380:CDS | 55.0% | |
| AGAGGACATGGAACACAGCG+GGG | - | chr2_1:15219855-15219874 | None:intergenic | 55.0% | |
| TGAACTGTCCCACGGGCAAG+GGG | + | chr2_1:15217218-15217237 | Msa0197380:CDS | 60.0% | |
| AACGAAAGCCCCTTGCCCGT+GGG | - | chr2_1:15217229-15217248 | None:intergenic | 60.0% | |
| CTACAGGACCGGGTGTACTG+AGG | + | chr2_1:15217861-15217880 | Msa0197380:CDS | 60.0% | |
| TCTAGCCGTGTGCCCGTGTT+AGG | + | chr2_1:15220023-15220042 | Msa0197380:intron | 60.0% | |
| GAACGAAAGCCCCTTGCCCG+TGG | - | chr2_1:15217230-15217249 | None:intergenic | 65.0% | |
| GACCGGGTGTACTGAGGGAG+TGG | + | chr2_1:15217867-15217886 | Msa0197380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 15216409 | 15220800 | 15216409 | ID=Msa0197380;Name=Msa0197380 |
| chr2_1 | mRNA | 15216409 | 15220800 | 15216409 | ID=Msa0197380-mRNA-1;Parent=Msa0197380;Name=Msa0197380-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.2|0|1|1|1|6|0|690 |
| chr2_1 | exon | 15216409 | 15216538 | 15216409 | ID=Msa0197380-mRNA-1:exon:6456;Parent=Msa0197380-mRNA-1 |
| chr2_1 | exon | 15216650 | 15216817 | 15216650 | ID=Msa0197380-mRNA-1:exon:6457;Parent=Msa0197380-mRNA-1 |
| chr2_1 | exon | 15216906 | 15217525 | 15216906 | ID=Msa0197380-mRNA-1:exon:6458;Parent=Msa0197380-mRNA-1 |
| chr2_1 | exon | 15217635 | 15217980 | 15217635 | ID=Msa0197380-mRNA-1:exon:6459;Parent=Msa0197380-mRNA-1 |
| chr2_1 | exon | 15219038 | 15219590 | 15219038 | ID=Msa0197380-mRNA-1:exon:6460;Parent=Msa0197380-mRNA-1 |
| chr2_1 | exon | 15220545 | 15220800 | 15220545 | ID=Msa0197380-mRNA-1:exon:6461;Parent=Msa0197380-mRNA-1 |
| chr2_1 | CDS | 15216409 | 15216538 | 15216409 | ID=Msa0197380-mRNA-1:cds;Parent=Msa0197380-mRNA-1 |
| chr2_1 | CDS | 15216650 | 15216817 | 15216650 | ID=Msa0197380-mRNA-1:cds;Parent=Msa0197380-mRNA-1 |
| chr2_1 | CDS | 15216906 | 15217525 | 15216906 | ID=Msa0197380-mRNA-1:cds;Parent=Msa0197380-mRNA-1 |
| chr2_1 | CDS | 15217635 | 15217980 | 15217635 | ID=Msa0197380-mRNA-1:cds;Parent=Msa0197380-mRNA-1 |
| chr2_1 | CDS | 15219038 | 15219590 | 15219038 | ID=Msa0197380-mRNA-1:cds;Parent=Msa0197380-mRNA-1 |
| chr2_1 | CDS | 15220545 | 15220800 | 15220545 | ID=Msa0197380-mRNA-1:cds;Parent=Msa0197380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
