AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0357340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357340 MtrunA17_Chr3g0094221 80.311 386 22 4 1 334 275 658 0.0 571
Msa0357340 MtrunA17_Chr8g0375191 55.959 386 112 6 1 332 1308 1689 3.71e-130 409
Msa0357340 MtrunA17_Chr8g0375181 55.699 386 113 6 1 332 1385 1766 7.53e-130 409
Msa0357340 MtrunA17_Chr8g0375151 53.368 386 122 6 1 332 1264 1645 1.91e-124 393
Msa0357340 MtrunA17_Chr8g0375861 42.338 385 148 7 1 332 856 1219 1.00e-87 288
Msa0357340 MtrunA17_Chr8g0375871 42.338 385 148 7 1 332 856 1219 1.17e-87 287
Msa0357340 MtrunA17_Chr5g0435821 65.278 72 22 2 1 70 508 578 1.06e-19 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 50 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAGACTAGTTTGGTTTA+TGG 0.141597 3_1:-39199420 Msa0357340:CDS
GTGCAAGGGCCTTCAATTTA+AGG 0.163196 3_1:-39199205 Msa0357340:intron
AAGGCCCTTGCACTCTAAAA+TGG 0.255682 3_1:+39199215 None:intergenic
TGGGAACATTGGAGGGTTTA+GGG 0.280701 3_1:-39199319 Msa0357340:CDS
GTGGGAACATTGGAGGGTTT+AGG 0.295908 3_1:-39199320 Msa0357340:CDS
GAAATAATGTCACATATAAA+AGG 0.314158 3_1:-39200023 None:intergenic
GAAGAAATCGTGCGCCTTGT+TGG 0.377349 3_1:-39199258 Msa0357340:CDS
GTTGAAGGTGGAGACTAGTT+TGG 0.400621 3_1:-39199427 Msa0357340:intron
AAGAAATCGTGCGCCTTGTT+GGG 0.421241 3_1:-39199257 Msa0357340:CDS
TAGGGAAGATCAAGTAATCT+TGG 0.425862 3_1:-39199301 Msa0357340:CDS
CATGAAGGAAAATAATTTGT+TGG 0.426320 3_1:-39199027 Msa0357340:CDS
TTGCTTCTTCTCCTTTGAAA+AGG 0.426422 3_1:-39199073 Msa0357340:CDS
TTCTCCTTTGAAAAGGCGAT+GGG 0.427960 3_1:-39199066 Msa0357340:CDS
AGAAGATTGATCTTACATCT+TGG 0.442831 3_1:+39199631 None:intergenic
AAGGCGCACGATTTCTTCCT+TGG 0.446342 3_1:+39199263 None:intergenic
CTAGAGCAAGGAAGAGGTTG+TGG 0.447577 3_1:-39198914 Msa0357340:CDS
CTTCTCCTTTGAAAAGGCGA+TGG 0.455090 3_1:-39199067 Msa0357340:CDS
GGGGATACAGCTCAAACAAT+TGG 0.465389 3_1:-39199675 Msa0357340:CDS
TTCATAGATTGTATAACAAT+AGG 0.467858 3_1:+39199390 None:intergenic
AAGATCAAGTAATCTTGGTA+AGG 0.476025 3_1:-39199296 Msa0357340:CDS
GTTGAGACAATGAAGGTTGA+AGG 0.499098 3_1:-39198795 Msa0357340:CDS
CTCCTTTGAAAAGGCGATGG+GGG 0.507076 3_1:-39199064 Msa0357340:CDS
CAAGAGCTTGTTTCCCAACA+AGG 0.511125 3_1:+39199244 None:intergenic
TGAACTAAAACAACTGTATG+TGG 0.514070 3_1:-39198943 Msa0357340:CDS
GGTTACAACGGTGGGAACAT+TGG 0.518954 3_1:-39199330 Msa0357340:CDS
ACAACGGTGGGAACATTGGA+GGG 0.527945 3_1:-39199326 Msa0357340:CDS
TACAACGGTGGGAACATTGG+AGG 0.535147 3_1:-39199327 Msa0357340:CDS
GCAGAAATGGTTACAACGGT+GGG 0.538108 3_1:-39199338 Msa0357340:CDS
TTCTCTAGTTGAGACAATGA+AGG 0.539182 3_1:-39198802 Msa0357340:CDS
CTTTAACTAGAGCAAGGAAG+AGG 0.541846 3_1:-39198920 Msa0357340:CDS
ATTGTTATACAATCTATGAA+TGG 0.556649 3_1:-39199387 Msa0357340:CDS
GGCAGAAATGGTTACAACGG+TGG 0.572779 3_1:-39199339 Msa0357340:CDS
AGCATAAAAGCAGCTGAGAG+TGG 0.574731 3_1:-39199999 Msa0357340:CDS
ATTTGTAGAAATGTTGAAGA+GGG 0.580895 3_1:-39199711 Msa0357340:intron
GAAGAGGTTGTGGATTTGTG+AGG 0.581622 3_1:-39198904 Msa0357340:CDS
AGATCAAGTAATCTTGGTAA+GGG 0.588630 3_1:-39199295 Msa0357340:CDS
TACAGCTCAAACAATTGGAA+GGG 0.590099 3_1:-39199670 Msa0357340:CDS
GAGGTTGTGGATTTGTGAGG+AGG 0.612974 3_1:-39198901 Msa0357340:CDS
TTGTAATTGATCTCCATCGT+AGG 0.618294 3_1:-39199830 Msa0357340:intron
GAGTGGTAAGCTGAGTCGTG+AGG 0.620826 3_1:-39199982 Msa0357340:CDS
ACAGCTCAAACAATTGGAAG+GGG 0.621908 3_1:-39199669 Msa0357340:CDS
CATTTGTAGAAATGTTGAAG+AGG 0.622542 3_1:-39199712 Msa0357340:intron
ATACAGCTCAAACAATTGGA+AGG 0.624276 3_1:-39199671 Msa0357340:CDS
TTTCGGTCCTCAACCTACGA+TGG 0.629683 3_1:+39199817 None:intergenic
ATGTGGCTTTAACTAGAGCA+AGG 0.630690 3_1:-39198926 Msa0357340:CDS
TCTCCTTTGAAAAGGCGATG+GGG 0.633135 3_1:-39199065 Msa0357340:CDS
TTTGGCAGAAATGGTTACAA+CGG 0.635872 3_1:-39199342 Msa0357340:CDS
GATTATATATGAGTACATGA+AGG 0.640035 3_1:-39199042 Msa0357340:CDS
GAACTTTAGTACTCATGCCG+AGG 0.678831 3_1:-39199514 Msa0357340:CDS
GGTAAGGGATGATTCTACCA+AGG 0.679324 3_1:-39199280 Msa0357340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAACCTTAAATTGA+AGG + chr3_1:39199615-39199634 None:intergenic 15.0%
!!! ACAATGTTTTATGTTTTTTT+CGG - chr3_1:39199679-39199698 Msa0357340:CDS 15.0%
!!! TTTTAAAAACCTTAAATTGA+AGG + chr3_1:39199615-39199634 None:intergenic 15.0%
!!! ACAATGTTTTATGTTTTTTT+CGG - chr3_1:39199679-39199698 Msa0357340:CDS 15.0%
!! TTCATAGATTGTATAACAAT+AGG + chr3_1:39199421-39199440 None:intergenic 20.0%
!! ATTGTTATACAATCTATGAA+TGG - chr3_1:39199421-39199440 Msa0357340:CDS 20.0%
!!! CAATGTTTTATGTTTTTTTC+GGG - chr3_1:39199680-39199699 Msa0357340:CDS 20.0%
!! TTCATAGATTGTATAACAAT+AGG + chr3_1:39199421-39199440 None:intergenic 20.0%
!! ATTGTTATACAATCTATGAA+TGG - chr3_1:39199421-39199440 Msa0357340:CDS 20.0%
!!! CAATGTTTTATGTTTTTTTC+GGG - chr3_1:39199680-39199699 Msa0357340:CDS 20.0%
! ACTATGAAAAAATGAAGATG+CGG - chr3_1:39198930-39198949 Msa0357340:CDS 25.0%
! ATTTGTAGAAATGTTGAAGA+GGG - chr3_1:39199097-39199116 Msa0357340:CDS 25.0%
!! AGAATCTAAAAGTCAGTTTT+TGG - chr3_1:39199216-39199235 Msa0357340:CDS 25.0%
! AAAAAGAATGAGAAGATGAA+AGG - chr3_1:39199241-39199260 Msa0357340:CDS 25.0%
! AAATTCAATTGACATGTTGA+AGG - chr3_1:39199366-39199385 Msa0357340:CDS 25.0%
!!! GTTTTTTTCGGGAATTTTTT+AGG - chr3_1:39199691-39199710 Msa0357340:CDS 25.0%
! GATTATATATGAGTACATGA+AGG - chr3_1:39199766-39199785 Msa0357340:intron 25.0%
!! CATGAAGGAAAATAATTTGT+TGG - chr3_1:39199781-39199800 Msa0357340:intron 25.0%
!! TTTTCCCAATAAGAAAACAT+GGG + chr3_1:39199953-39199972 None:intergenic 25.0%
! ACTATGAAAAAATGAAGATG+CGG - chr3_1:39198930-39198949 Msa0357340:CDS 25.0%
! ATTTGTAGAAATGTTGAAGA+GGG - chr3_1:39199097-39199116 Msa0357340:CDS 25.0%
!! AGAATCTAAAAGTCAGTTTT+TGG - chr3_1:39199216-39199235 Msa0357340:CDS 25.0%
! AAAAAGAATGAGAAGATGAA+AGG - chr3_1:39199241-39199260 Msa0357340:CDS 25.0%
! AAATTCAATTGACATGTTGA+AGG - chr3_1:39199366-39199385 Msa0357340:CDS 25.0%
!!! GTTTTTTTCGGGAATTTTTT+AGG - chr3_1:39199691-39199710 Msa0357340:CDS 25.0%
! GATTATATATGAGTACATGA+AGG - chr3_1:39199766-39199785 Msa0357340:intron 25.0%
!! CATGAAGGAAAATAATTTGT+TGG - chr3_1:39199781-39199800 Msa0357340:intron 25.0%
!! TTTTCCCAATAAGAAAACAT+GGG + chr3_1:39199953-39199972 None:intergenic 25.0%
! TACATCACCCTTGTATTTTT+CGG + chr3_1:39199011-39199030 None:intergenic 30.0%
CATTTGTAGAAATGTTGAAG+AGG - chr3_1:39199096-39199115 Msa0357340:CDS 30.0%
AGAAGATTGATCTTACATCT+TGG + chr3_1:39199180-39199199 None:intergenic 30.0%
! AATCCGATTCTGACAATTTT+TGG - chr3_1:39199448-39199467 Msa0357340:intron 30.0%
AAGATCAAGTAATCTTGGTA+AGG - chr3_1:39199512-39199531 Msa0357340:CDS 30.0%
AGATCAAGTAATCTTGGTAA+GGG - chr3_1:39199513-39199532 Msa0357340:CDS 30.0%
!!! TTTAACCATTTTAGAGTGCA+AGG - chr3_1:39199588-39199607 Msa0357340:CDS 30.0%
!!! TTAACCATTTTAGAGTGCAA+GGG - chr3_1:39199589-39199608 Msa0357340:CDS 30.0%
TGAACTAAAACAACTGTATG+TGG - chr3_1:39199865-39199884 Msa0357340:CDS 30.0%
! TAAGCCCATGTTTTCTTATT+GGG - chr3_1:39199946-39199965 Msa0357340:CDS 30.0%
! CTTTTCCCAATAAGAAAACA+TGG + chr3_1:39199954-39199973 None:intergenic 30.0%
! TACATCACCCTTGTATTTTT+CGG + chr3_1:39199011-39199030 None:intergenic 30.0%
CATTTGTAGAAATGTTGAAG+AGG - chr3_1:39199096-39199115 Msa0357340:CDS 30.0%
AGAAGATTGATCTTACATCT+TGG + chr3_1:39199180-39199199 None:intergenic 30.0%
! AATCCGATTCTGACAATTTT+TGG - chr3_1:39199448-39199467 Msa0357340:intron 30.0%
AAGATCAAGTAATCTTGGTA+AGG - chr3_1:39199512-39199531 Msa0357340:CDS 30.0%
AGATCAAGTAATCTTGGTAA+GGG - chr3_1:39199513-39199532 Msa0357340:CDS 30.0%
!!! TTTAACCATTTTAGAGTGCA+AGG - chr3_1:39199588-39199607 Msa0357340:CDS 30.0%
!!! TTAACCATTTTAGAGTGCAA+GGG - chr3_1:39199589-39199608 Msa0357340:CDS 30.0%
TGAACTAAAACAACTGTATG+TGG - chr3_1:39199865-39199884 Msa0357340:CDS 30.0%
! TAAGCCCATGTTTTCTTATT+GGG - chr3_1:39199946-39199965 Msa0357340:CDS 30.0%
! CTTTTCCCAATAAGAAAACA+TGG + chr3_1:39199954-39199973 None:intergenic 30.0%
TGAAAAAATGAAGATGCGGA+AGG - chr3_1:39198934-39198953 Msa0357340:CDS 35.0%
GAAAAAATGAAGATGCGGAA+GGG - chr3_1:39198935-39198954 Msa0357340:CDS 35.0%
TTGTAATTGATCTCCATCGT+AGG - chr3_1:39198978-39198997 Msa0357340:CDS 35.0%
TTGAGGACCGAAAAATACAA+GGG - chr3_1:39199001-39199020 Msa0357340:CDS 35.0%
TGTGTTCATTGATGAAGTTC+AGG - chr3_1:39199039-39199058 Msa0357340:CDS 35.0%
TGAAGTTCAGGATCTAACAA+TGG - chr3_1:39199051-39199070 Msa0357340:CDS 35.0%
!! AAGAGGGTTTTGTGTTTTGT+GGG - chr3_1:39199113-39199132 Msa0357340:intron 35.0%
ATACAGCTCAAACAATTGGA+AGG - chr3_1:39199137-39199156 Msa0357340:intron 35.0%
TACAGCTCAAACAATTGGAA+GGG - chr3_1:39199138-39199157 Msa0357340:intron 35.0%
!! TTGTGACAATTTTAGCACCT+CGG + chr3_1:39199314-39199333 None:intergenic 35.0%
TTCAATTGACATGTTGAAGG+TGG - chr3_1:39199369-39199388 Msa0357340:CDS 35.0%
CTGCCAAAAATTGTCAGAAT+CGG + chr3_1:39199454-39199473 None:intergenic 35.0%
!!! CTGACAATTTTTGGCAGAAA+TGG - chr3_1:39199457-39199476 Msa0357340:intron 35.0%
TTTGGCAGAAATGGTTACAA+CGG - chr3_1:39199466-39199485 Msa0357340:intron 35.0%
TAGGGAAGATCAAGTAATCT+TGG - chr3_1:39199507-39199526 Msa0357340:CDS 35.0%
! TTGCTTCTTCTCCTTTGAAA+AGG - chr3_1:39199735-39199754 Msa0357340:intron 35.0%
! CTAAGCCCATGTTTTCTTAT+TGG - chr3_1:39199945-39199964 Msa0357340:CDS 35.0%
TTCTCTAGTTGAGACAATGA+AGG - chr3_1:39200006-39200025 Msa0357340:CDS 35.0%
TGAAAAAATGAAGATGCGGA+AGG - chr3_1:39198934-39198953 Msa0357340:CDS 35.0%
GAAAAAATGAAGATGCGGAA+GGG - chr3_1:39198935-39198954 Msa0357340:CDS 35.0%
TTGTAATTGATCTCCATCGT+AGG - chr3_1:39198978-39198997 Msa0357340:CDS 35.0%
TTGAGGACCGAAAAATACAA+GGG - chr3_1:39199001-39199020 Msa0357340:CDS 35.0%
TGTGTTCATTGATGAAGTTC+AGG - chr3_1:39199039-39199058 Msa0357340:CDS 35.0%
TGAAGTTCAGGATCTAACAA+TGG - chr3_1:39199051-39199070 Msa0357340:CDS 35.0%
!! AAGAGGGTTTTGTGTTTTGT+GGG - chr3_1:39199113-39199132 Msa0357340:intron 35.0%
ATACAGCTCAAACAATTGGA+AGG - chr3_1:39199137-39199156 Msa0357340:intron 35.0%
TACAGCTCAAACAATTGGAA+GGG - chr3_1:39199138-39199157 Msa0357340:intron 35.0%
!! TTGTGACAATTTTAGCACCT+CGG + chr3_1:39199314-39199333 None:intergenic 35.0%
TTCAATTGACATGTTGAAGG+TGG - chr3_1:39199369-39199388 Msa0357340:CDS 35.0%
CTGCCAAAAATTGTCAGAAT+CGG + chr3_1:39199454-39199473 None:intergenic 35.0%
!!! CTGACAATTTTTGGCAGAAA+TGG - chr3_1:39199457-39199476 Msa0357340:intron 35.0%
TTTGGCAGAAATGGTTACAA+CGG - chr3_1:39199466-39199485 Msa0357340:intron 35.0%
TAGGGAAGATCAAGTAATCT+TGG - chr3_1:39199507-39199526 Msa0357340:CDS 35.0%
! TTGCTTCTTCTCCTTTGAAA+AGG - chr3_1:39199735-39199754 Msa0357340:intron 35.0%
! CTAAGCCCATGTTTTCTTAT+TGG - chr3_1:39199945-39199964 Msa0357340:CDS 35.0%
TTCTCTAGTTGAGACAATGA+AGG - chr3_1:39200006-39200025 Msa0357340:CDS 35.0%
GTTGAGGACCGAAAAATACA+AGG - chr3_1:39199000-39199019 Msa0357340:CDS 40.0%
!! GAAGAGGGTTTTGTGTTTTG+TGG - chr3_1:39199112-39199131 Msa0357340:intron 40.0%
!! AGAGGGTTTTGTGTTTTGTG+GGG - chr3_1:39199114-39199133 Msa0357340:intron 40.0%
ACAGCTCAAACAATTGGAAG+GGG - chr3_1:39199139-39199158 Msa0357340:intron 40.0%
!! GTGGAGACTAGTTTGGTTTA+TGG - chr3_1:39199388-39199407 Msa0357340:CDS 40.0%
! TTCTCCTTTGAAAAGGCGAT+GGG - chr3_1:39199742-39199761 Msa0357340:intron 40.0%
!! ATGTGGCTTTAACTAGAGCA+AGG - chr3_1:39199882-39199901 Msa0357340:CDS 40.0%
CTTTAACTAGAGCAAGGAAG+AGG - chr3_1:39199888-39199907 Msa0357340:CDS 40.0%
GTTGAGACAATGAAGGTTGA+AGG - chr3_1:39200013-39200032 Msa0357340:CDS 40.0%
GTTGAGGACCGAAAAATACA+AGG - chr3_1:39199000-39199019 Msa0357340:CDS 40.0%
!! GAAGAGGGTTTTGTGTTTTG+TGG - chr3_1:39199112-39199131 Msa0357340:intron 40.0%
!! AGAGGGTTTTGTGTTTTGTG+GGG - chr3_1:39199114-39199133 Msa0357340:intron 40.0%
ACAGCTCAAACAATTGGAAG+GGG - chr3_1:39199139-39199158 Msa0357340:intron 40.0%
!! GTGGAGACTAGTTTGGTTTA+TGG - chr3_1:39199388-39199407 Msa0357340:CDS 40.0%
! TTCTCCTTTGAAAAGGCGAT+GGG - chr3_1:39199742-39199761 Msa0357340:intron 40.0%
!! ATGTGGCTTTAACTAGAGCA+AGG - chr3_1:39199882-39199901 Msa0357340:CDS 40.0%
CTTTAACTAGAGCAAGGAAG+AGG - chr3_1:39199888-39199907 Msa0357340:CDS 40.0%
GTTGAGACAATGAAGGTTGA+AGG - chr3_1:39200013-39200032 Msa0357340:CDS 40.0%
AGCATAAAAGCAGCTGAGAG+TGG - chr3_1:39198809-39198828 Msa0357340:CDS 45.0%
TTGATCTCCATCGTAGGTTG+AGG - chr3_1:39198984-39199003 Msa0357340:CDS 45.0%
GGGGATACAGCTCAAACAAT+TGG - chr3_1:39199133-39199152 Msa0357340:intron 45.0%
GAACTTTAGTACTCATGCCG+AGG - chr3_1:39199294-39199313 Msa0357340:CDS 45.0%
! GTTGAAGGTGGAGACTAGTT+TGG - chr3_1:39199381-39199400 Msa0357340:CDS 45.0%
GCAGAAATGGTTACAACGGT+GGG - chr3_1:39199470-39199489 Msa0357340:intron 45.0%
TGGGAACATTGGAGGGTTTA+GGG - chr3_1:39199489-39199508 Msa0357340:intron 45.0%
GGTAAGGGATGATTCTACCA+AGG - chr3_1:39199528-39199547 Msa0357340:CDS 45.0%
! AAGAAATCGTGCGCCTTGTT+GGG - chr3_1:39199551-39199570 Msa0357340:CDS 45.0%
! CAAGAGCTTGTTTCCCAACA+AGG + chr3_1:39199567-39199586 None:intergenic 45.0%
! AAGGCCCTTGCACTCTAAAA+TGG + chr3_1:39199596-39199615 None:intergenic 45.0%
GTGCAAGGGCCTTCAATTTA+AGG - chr3_1:39199603-39199622 Msa0357340:CDS 45.0%
! CTTCTCCTTTGAAAAGGCGA+TGG - chr3_1:39199741-39199760 Msa0357340:intron 45.0%
! TCTCCTTTGAAAAGGCGATG+GGG - chr3_1:39199743-39199762 Msa0357340:intron 45.0%
GAAGAGGTTGTGGATTTGTG+AGG - chr3_1:39199904-39199923 Msa0357340:CDS 45.0%
AGCATAAAAGCAGCTGAGAG+TGG - chr3_1:39198809-39198828 Msa0357340:CDS 45.0%
TTGATCTCCATCGTAGGTTG+AGG - chr3_1:39198984-39199003 Msa0357340:CDS 45.0%
GGGGATACAGCTCAAACAAT+TGG - chr3_1:39199133-39199152 Msa0357340:intron 45.0%
GAACTTTAGTACTCATGCCG+AGG - chr3_1:39199294-39199313 Msa0357340:CDS 45.0%
! GTTGAAGGTGGAGACTAGTT+TGG - chr3_1:39199381-39199400 Msa0357340:CDS 45.0%
GCAGAAATGGTTACAACGGT+GGG - chr3_1:39199470-39199489 Msa0357340:intron 45.0%
TGGGAACATTGGAGGGTTTA+GGG - chr3_1:39199489-39199508 Msa0357340:intron 45.0%
GGTAAGGGATGATTCTACCA+AGG - chr3_1:39199528-39199547 Msa0357340:CDS 45.0%
! AAGAAATCGTGCGCCTTGTT+GGG - chr3_1:39199551-39199570 Msa0357340:CDS 45.0%
! CAAGAGCTTGTTTCCCAACA+AGG + chr3_1:39199567-39199586 None:intergenic 45.0%
! AAGGCCCTTGCACTCTAAAA+TGG + chr3_1:39199596-39199615 None:intergenic 45.0%
GTGCAAGGGCCTTCAATTTA+AGG - chr3_1:39199603-39199622 Msa0357340:CDS 45.0%
! CTTCTCCTTTGAAAAGGCGA+TGG - chr3_1:39199741-39199760 Msa0357340:intron 45.0%
! TCTCCTTTGAAAAGGCGATG+GGG - chr3_1:39199743-39199762 Msa0357340:intron 45.0%
GAAGAGGTTGTGGATTTGTG+AGG - chr3_1:39199904-39199923 Msa0357340:CDS 45.0%
TTTCGGTCCTCAACCTACGA+TGG + chr3_1:39198994-39199013 None:intergenic 50.0%
GGCAGAAATGGTTACAACGG+TGG - chr3_1:39199469-39199488 Msa0357340:intron 50.0%
GGTTACAACGGTGGGAACAT+TGG - chr3_1:39199478-39199497 Msa0357340:intron 50.0%
TACAACGGTGGGAACATTGG+AGG - chr3_1:39199481-39199500 Msa0357340:intron 50.0%
ACAACGGTGGGAACATTGGA+GGG - chr3_1:39199482-39199501 Msa0357340:intron 50.0%
GTGGGAACATTGGAGGGTTT+AGG - chr3_1:39199488-39199507 Msa0357340:intron 50.0%
AAGGCGCACGATTTCTTCCT+TGG + chr3_1:39199548-39199567 None:intergenic 50.0%
GAAGAAATCGTGCGCCTTGT+TGG - chr3_1:39199550-39199569 Msa0357340:CDS 50.0%
! CTCCTTTGAAAAGGCGATGG+GGG - chr3_1:39199744-39199763 Msa0357340:intron 50.0%
! ATCCCCCATCGCCTTTTCAA+AGG + chr3_1:39199749-39199768 None:intergenic 50.0%
CTAGAGCAAGGAAGAGGTTG+TGG - chr3_1:39199894-39199913 Msa0357340:CDS 50.0%
GAGGTTGTGGATTTGTGAGG+AGG - chr3_1:39199907-39199926 Msa0357340:CDS 50.0%
TTTCGGTCCTCAACCTACGA+TGG + chr3_1:39198994-39199013 None:intergenic 50.0%
GGCAGAAATGGTTACAACGG+TGG - chr3_1:39199469-39199488 Msa0357340:intron 50.0%
GGTTACAACGGTGGGAACAT+TGG - chr3_1:39199478-39199497 Msa0357340:intron 50.0%
TACAACGGTGGGAACATTGG+AGG - chr3_1:39199481-39199500 Msa0357340:intron 50.0%
ACAACGGTGGGAACATTGGA+GGG - chr3_1:39199482-39199501 Msa0357340:intron 50.0%
GTGGGAACATTGGAGGGTTT+AGG - chr3_1:39199488-39199507 Msa0357340:intron 50.0%
AAGGCGCACGATTTCTTCCT+TGG + chr3_1:39199548-39199567 None:intergenic 50.0%
GAAGAAATCGTGCGCCTTGT+TGG - chr3_1:39199550-39199569 Msa0357340:CDS 50.0%
! CTCCTTTGAAAAGGCGATGG+GGG - chr3_1:39199744-39199763 Msa0357340:intron 50.0%
! ATCCCCCATCGCCTTTTCAA+AGG + chr3_1:39199749-39199768 None:intergenic 50.0%
CTAGAGCAAGGAAGAGGTTG+TGG - chr3_1:39199894-39199913 Msa0357340:CDS 50.0%
GAGGTTGTGGATTTGTGAGG+AGG - chr3_1:39199907-39199926 Msa0357340:CDS 50.0%
GAGTGGTAAGCTGAGTCGTG+AGG - chr3_1:39198826-39198845 Msa0357340:CDS 55.0%
GAGTGGTAAGCTGAGTCGTG+AGG - chr3_1:39198826-39198845 Msa0357340:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 39198791 39200039 39198791 ID=Msa0357340;Name=Msa0357340
chr3_1 mRNA 39198791 39200039 39198791 ID=Msa0357340-mRNA-1;Parent=Msa0357340;Name=Msa0357340-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.33|0|0.75|0.33|0.25|4|0|334
chr3_1 exon 39199831 39200039 39199831 ID=Msa0357340-mRNA-1:exon:7039;Parent=Msa0357340-mRNA-1
chr3_1 exon 39199494 39199725 39199494 ID=Msa0357340-mRNA-1:exon:7038;Parent=Msa0357340-mRNA-1
chr3_1 exon 39199206 39199442 39199206 ID=Msa0357340-mRNA-1:exon:7037;Parent=Msa0357340-mRNA-1
chr3_1 exon 39198791 39199117 39198791 ID=Msa0357340-mRNA-1:exon:7036;Parent=Msa0357340-mRNA-1
chr3_1 CDS 39199831 39200039 39199831 ID=Msa0357340-mRNA-1:cds;Parent=Msa0357340-mRNA-1
chr3_1 CDS 39199494 39199725 39199494 ID=Msa0357340-mRNA-1:cds;Parent=Msa0357340-mRNA-1
chr3_1 CDS 39199206 39199442 39199206 ID=Msa0357340-mRNA-1:cds;Parent=Msa0357340-mRNA-1
chr3_1 CDS 39198791 39199117 39198791 ID=Msa0357340-mRNA-1:cds;Parent=Msa0357340-mRNA-1
Gene Sequence

>Msa0357340

ATGTCACATATAAAAGGCAGCATAAAAGCAGCTGAGAGTGGTAAGCTGAGTCGTGAGGACTATTGTACTTTATCTGAAAGTCGAGCATCGAGTAGTTTGAGCATGAAAACAAGAGAACTGATATATGATATCTTTCAAAACTATGAAAAAATGAAGATGCGGAAGGGAGAATTTGATATTGCTGATATTGTAATTGATCTCCATCGTAGAAATGTTGAAGAGGGTTTTGTGTTTTGTGGGGATACAGCTCAAACAATTGGAAGGGGTATCGATTTTAGATTCCAAGATGTAAGATCAATCTTCTTCAACAAGTTTGTGTTAGAATCTAAAAGTCAGTTTTTGGATAAAAAGAATGAGAAGATGAAAGGTTGCATTTCTGATATTTTCATGTTGAGTGAGAACTTTAGTACTCATGCCGAGGTGCTAAAATTGTCACAAAGTGTGGAGACTAGTTTGGTTTATGGAGAATCACCTATTGTTATACAATCTATGAATGGTGAAAATCCGATTCTGACAATTTTTGGCAGAAATGGTTACAACGGTGGGAACATTGGAGGGTTTAGGGAAGATCAAGTAATCTTGGTAAGGGATGATTCTACCAAGGAAGAAATCGTGCGCCTTGTTGGGAAACAAGCTCTTGTTTTAACCATTTTAGAGTGCAAGGGCCTTCAATTTAAGGATGTGTTATTGTACAACTTTTTTGCTTCTTCTCCTTTGAAAAGGCGATGGGGGATTATATATGAGTACATGAAGGAAAATAATTTGTTGGACTGTCATTCGCGTATTAACTGTCAAAGTTTTGTCGATTCGAAGCATAATGTTTTGTGCTCTGAACTAAAACAACTGTATGTGGCTTTAACTAGAGCAAGGAAGAGGTTGTGGATTTGTGAGGAGGATGTAGAAGAGTTTTCTAAGCCCATGTTTTCTTATTGGGAAAAGAAGAATCTTGTACAATTCAAGATACTAGATAATTCTCTAGTTGAGACAATGAAGGTTGAAGGATGA

Protein sequence

>Msa0357340

MSHIKGSIKAAESGKLSREDYCTLSESRASSSLSMKTRELIYDIFQNYEKMKMRKGEFDIADIVIDLHRRNVEEGFVFCGDTAQTIGRGIDFRFQDVRSIFFNKFVLESKSQFLDKKNEKMKGCISDIFMLSENFSTHAEVLKLSQSVETSLVYGESPIVIQSMNGENPILTIFGRNGYNGGNIGGFREDQVILVRDDSTKEEIVRLVGKQALVLTILECKGLQFKDVLLYNFFASSPLKRRWGIIYEYMKENNLLDCHSRINCQSFVDSKHNVLCSELKQLYVALTRARKRLWICEEDVEEFSKPMFSYWEKKNLVQFKILDNSLVETMKVEG*