AlfalfaGEDB | Msa0411390

M. sativa cultivar zhongmu-4 / Msa0411390

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016020 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0071944
PFAM: PF05701.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411390	XP_003600388.2	97.546	652	16	0	1	652	1	652	0.0	1251

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411390	sp\|Q9LVQ4\|Y5586_ARATH	55.371	661	274	11	1	652	1	649	0.0	573

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411390	G7IXR7	97.546	652	16	0	1	652	1	652	0.0	1251

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0411390	0.834554	2.802200e-56	-8.615850e-47
Msa0006110	Msa0411390	0.830382	3.031393e-55	-8.615850e-47
Msa0007990	Msa0411390	0.804018	2.641626e-49	-8.615850e-47
Msa0009180	Msa0411390	0.806471	8.093252e-50	-8.615850e-47
Msa0009190	Msa0411390	0.829644	4.587110e-55	-8.615850e-47
Msa0015390	Msa0411390	0.826953	2.043612e-54	-8.615850e-47
Msa0020410	Msa0411390	0.819720	1.001599e-52	-8.615850e-47
Msa0023330	Msa0411390	0.803097	4.101808e-49	-8.615850e-47
Msa0026430	Msa0411390	0.820982	5.142639e-53	-8.615850e-47
Msa0026910	Msa0411390	0.807618	4.628529e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411390	MtrunA17_Chr3g0102681	97.546	652	16	0	1	652	1	652	0.0	1251
Msa0411390	MtrunA17_Chr5g0446731	58.533	668	252	9	1	652	1	659	0.0	615
Msa0411390	MtrunA17_Chr3g0078801	59.132	668	248	9	1	652	1	659	0.0	615
Msa0411390	MtrunA17_Chr2g0290651	43.186	565	309	7	11	570	8	565	1.36e-110	345
Msa0411390	MtrunA17_Chr4g0076431	44.938	563	273	11	14	566	6	541	5.36e-96	306
Msa0411390	MtrunA17_Chr3g0133891	29.703	606	389	10	4	580	269	866	2.41e-42	164
Msa0411390	MtrunA17_Chr1g0153431	27.287	634	391	15	11	594	257	870	9.17e-36	144
Msa0411390	MtrunA17_Chr4g0075951	42.812	313	161	6	261	566	4	305	4.63e-34	132
Msa0411390	MtrunA17_Chr7g0251231	29.538	606	357	16	69	637	55	627	1.51e-26	115
Msa0411390	MtrunA17_Chr8g0369191	31.228	570	323	16	24	571	27	549	2.02e-25	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0411390	AT5G55860.1	55.371	661	274	11	1	652	1	649	0.0	573
Msa0411390	AT1G12150.2	40.575	557	309	4	12	568	9	543	2.88e-107	335
Msa0411390	AT1G12150.1	40.575	557	309	4	12	568	9	543	2.88e-107	335
Msa0411390	AT4G17210.1	32.750	571	329	9	2	565	1	523	1.04e-62	217
Msa0411390	AT2G26570.1	29.372	589	384	9	9	573	151	731	3.40e-39	155
Msa0411390	AT2G26570.2	29.372	589	384	9	9	573	151	731	3.40e-39	155
Msa0411390	AT4G33390.1	28.497	579	369	10	24	571	156	720	1.63e-30	128
Msa0411390	AT5G42880.1	27.634	579	372	13	11	571	117	666	1.30e-24	109
Msa0411390	AT1G66840.2	27.916	523	321	10	32	531	11	500	1.19e-23	106
Msa0411390	AT1G66840.1	27.916	523	321	10	32	531	11	500	1.19e-23	106

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Find 129 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTATTACTGAATCTA+GGG	0.504876	3_2:+53651109	Msa0411390:CDS
AAAAGAAATTTCAGCTGTAA+AGG	0.450558	3_2:+53651406	Msa0411390:CDS
AAAAGAGCTGAACAAGTTAA+AGG	0.285147	3_2:+53650995	Msa0411390:CDS
AAAAGCAATATTGTTGAGGA+TGG	0.511312	3_2:+53652673	Msa0411390:CDS
AAAATCCGGCAAACTGCTAC+TGG	0.430151	3_2:+53649014	Msa0411390:CDS
AAAGAACGCTGAAACTACTA+AGG	0.527676	3_2:+53651025	Msa0411390:CDS
AAAGCTGCTGTGTCTCTATT+TGG	0.302297	3_2:+53649104	Msa0411390:CDS
AAAGTTGGAGGCAACTCAGA+AGG	0.575379	3_2:+53652345	Msa0411390:CDS
AACACAGGAGGCCTTGAAAA+AGG	0.341599	3_2:+53652390	Msa0411390:CDS
AACAGACTGAAAAGGTGGGC+TGG	0.541022	3_2:-53649081	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAGAGATGTGTTTGAAAA+TGG	-	chr3_2:53647786-53647805	None:intergenic	30.0%
TGAGCTACCTTACTTTATTA+TGG	+	chr3_2:53648071-53648090	Msa0411390:intron	30.0%
GAAACCACAAAACAAAACAA+AGG	-	chr3_2:53648099-53648118	None:intergenic	30.0%
TTTCAAACTGAAAAAGCCTT+TGG	+	chr3_2:53648325-53648344	Msa0411390:intron	30.0%
AAAGTCAAGATAGACATGAT+TGG	-	chr3_2:53648751-53648770	None:intergenic	30.0%
AAACCAACCTGTTAAAAACA+TGG	-	chr3_2:53648954-53648973	None:intergenic	30.0%
ATACAATGGTTGCAAAAATC+CGG	+	chr3_2:53649000-53649019	Msa0411390:exon	30.0%
ATCAAAACTGACAATTACCT+CGG	-	chr3_2:53649186-53649205	None:intergenic	30.0%
TCTTAGCTACAAATTCTTTG+TGG	+	chr3_2:53649216-53649235	Msa0411390:intron	30.0%
AACAAGCTGAAAACAAGTTA+TGG	+	chr3_2:53649442-53649461	Msa0411390:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	53647710	53653052	53647710	ID=Msa0411390;Name=Msa0411390
chr3_2	mRNA	53647710	53653052	53647710	ID=Msa0411390-mRNA-1;Parent=Msa0411390;Name=Msa0411390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=261\|1\|1\|1\|0.5\|0.33\|3\|320\|652
chr3_2	exon	53647710	53647931	53647710	ID=Msa0411390-mRNA-1:exon:10733;Parent=Msa0411390-mRNA-1
chr3_2	exon	53648966	53649187	53648966	ID=Msa0411390-mRNA-1:exon:10734;Parent=Msa0411390-mRNA-1
chr3_2	exon	53650957	53653052	53650957	ID=Msa0411390-mRNA-1:exon:10735;Parent=Msa0411390-mRNA-1
chr3_2	five_prime_UTR	53647710	53647931	53647710	ID=Msa0411390-mRNA-1:five_prime_utr;Parent=Msa0411390-mRNA-1
chr3_2	five_prime_UTR	53648966	53649004	53648966	ID=Msa0411390-mRNA-1:five_prime_utr;Parent=Msa0411390-mRNA-1
chr3_2	CDS	53649005	53649187	53649005	ID=Msa0411390-mRNA-1:cds;Parent=Msa0411390-mRNA-1
chr3_2	CDS	53650957	53652732	53650957	ID=Msa0411390-mRNA-1:cds;Parent=Msa0411390-mRNA-1
chr3_2	three_prime_UTR	53652733	53653052	53652733	ID=Msa0411390-mRNA-1:three_prime_utr;Parent=Msa0411390-mRNA-1

Gene Sequence

>Msa0411390

ATGGTTGCAAAAATCCGGCAAACTGCTACTGGCTCTCCCTCTCCTAGTCTAAAACCAGAGGTTGGAGAGATCGACACCAGCCCACCTTTTCAGTCTGTTAAAGCTGCTGTGTCTCTATTTGGTGAAGGTGCTTTCTCTGGGGAAAGACCTATCCATAAGAAGCCAAAAGCTTATTCTGCCGAGAGAGTTTTGGCCAAGGAGACGCAACTTCATGTAGCCGAAAAAGAGCTGAACAAGTTAAAGGAACAAGTAAAGAACGCTGAAACTACTAAGGCTCAAGCTCTTGTGGAGCTTGAAAGGGCCCAAAGGACAGTCGATGATTTGACACAGAAGCTAAAACTTATTACTGAATCTAGGGAGTTAGCAACGAAAGCAACAGAAGCTGCAAAAAGTCAGGCAAAACAAAAGTACGGTGACTCTGATGGAGCAAACGGTGCCTGGAAAGAAGAGTTAGAAAATGCAGTTCAAAGGTATGCATCTATCATGACAGAACTTGATGCTGCTAAGCAAGATCTGAGGAAAACCCGTCAGGAATACGATTCATCCTCGAATGCAAGAGTGTCAGCTGTCAAGAGAACAGAAGAAGCTGAAAATGCAATGAAGGAAAACACAGAAAGAGTATCTGAGCTGTCAAAAGAAATTTCAGCTGTAAAGGAGTCAATTGAGCAAACAAAGCTAGCATATGTGGAATCACAGCAACAGCAAGCATTGGTATTATCTGAAAAAGATGCTCTTAGACAATCATACAAAGCTACCCTTGAACAATCCAAAAAGAAATTACTTGCTTTGAAAAAGGAATTTAATCCCGAAATCACAAAAAGTCTTGAAGCACAGTTGGCCGAGACAATGAATGAAATTGCGGCTCTGCATACAGAAATGGAGAACAAAAGATCGTCTGACTTGGACTCTCTGAAAACTGTTACTTCGGAGCTTGATGGTGCGAAAGAATCGCTGCAGAAAGTAGTAGATGAAGAAAACACTCTTAGAAGCTTGGTAGAGACTCTGAAGGTGGAACTAGAGAATGTAAAGAAAGAACATTCTGAGTTGAAGGAAAAAGAGTCCGAATTGGAATCCACAGTTGGGAATCTGCATGTCAAACTTCGCAAAAGTAAGTCTGAGCTCGAAGCCTGTTCGGCTGAAGAATCTAAGGTTAGAGGTGCATCTGAGGAAATGATCTTGACGCTGAGTCAGTTAACATCCGAAACTGAGGAAGCACGGCGGGAAGCAGAAGATATGAAGAACAAGACAGAAGAGCTAAAGAAAGAAGCTGAAGCTACCAAGCTTGCATTGGAAGAAGCAGAGAAAAAACTGAAAGAAGCAACGGAAGAAGCAGAAGCAGCAAAAGCAGCTGAAGCTAGTGCAATCGAGCAGATTACAGTGCTAACTGAAAGGACTAGTGCAAGACGTGCATCTACATCGTCAGAATCCGGTGCTGCAATGACAATATCGACGGAGGAGTTCGAGTCTCTAAAACGGAAAGTCGAGGAATCCGATAAATTAGCTGACATGAAAGTGGATGCTGCGAAAGCACAGGTAGAAGCTGTGAAGGCTAGCGAAAACGAGGTTTTGAAAAAGTTGGAGGCAACTCAGAAGGAGATTGAAGATATGAAAACTGCAACACAGGAGGCCTTGAAAAAGGCTGCGATGGCTGAAGCAGCAAAGAAGGCAGTTGAGGGTGAGCTTCGAAGGTGGCGGGAGCGAGAACAGAAAAAAGCGGCAGAAGCTGCAGCTCGGATACTAGCCGAAACACAGATGTCATCGGAATCATCACCTCAACATTATAGGATTCAAAAGCAGAATGTTCCACCTCCTCGTACAACATTGGAAGTGAAAAAGTTAGATAAAGAGAAGATTTCAGTTTCGAAGAAAATTAACATTAGTGGTATCTTTCAGAGGAAGAAAAGCAATATTGTTGAGGATGGATCTGCTTCTTATTTGCCTGGTGAGAATCCTGTATAG

Protein sequence

>Msa0411390

MVAKIRQTATGSPSPSLKPEVGEIDTSPPFQSVKAAVSLFGEGAFSGERPIHKKPKAYSAERVLAKETQLHVAEKELNKLKEQVKNAETTKAQALVELERAQRTVDDLTQKLKLITESRELATKATEAAKSQAKQKYGDSDGANGAWKEELENAVQRYASIMTELDAAKQDLRKTRQEYDSSSNARVSAVKRTEEAENAMKENTERVSELSKEISAVKESIEQTKLAYVESQQQQALVLSEKDALRQSYKATLEQSKKKLLALKKEFNPEITKSLEAQLAETMNEIAALHTEMENKRSSDLDSLKTVTSELDGAKESLQKVVDEENTLRSLVETLKVELENVKKEHSELKEKESELESTVGNLHVKLRKSKSELEACSAEESKVRGASEEMILTLSQLTSETEEARREAEDMKNKTEELKKEAEATKLALEEAEKKLKEATEEAEAAKAAEASAIEQITVLTERTSARRASTSSESGAAMTISTEEFESLKRKVEESDKLADMKVDAAKAQVEAVKASENEVLKKLEATQKEIEDMKTATQEALKKAAMAEAAKKAVEGELRRWREREQKKAAEAAARILAETQMSSESSPQHYRIQKQNVPPPRTTLEVKKLDKEKISVSKKINISGIFQRKKSNIVEDGSASYLPGENPV*