AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0411390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0411390 MtrunA17_Chr3g0102681 97.546 652 16 0 1 652 1 652 0.0 1251
Msa0411390 MtrunA17_Chr5g0446731 58.533 668 252 9 1 652 1 659 0.0 615
Msa0411390 MtrunA17_Chr3g0078801 59.132 668 248 9 1 652 1 659 0.0 615
Msa0411390 MtrunA17_Chr2g0290651 43.186 565 309 7 11 570 8 565 1.36e-110 345
Msa0411390 MtrunA17_Chr4g0076431 44.938 563 273 11 14 566 6 541 5.36e-96 306
Msa0411390 MtrunA17_Chr3g0133891 29.703 606 389 10 4 580 269 866 2.41e-42 164
Msa0411390 MtrunA17_Chr1g0153431 27.287 634 391 15 11 594 257 870 9.17e-36 144
Msa0411390 MtrunA17_Chr4g0075951 42.812 313 161 6 261 566 4 305 4.63e-34 132
Msa0411390 MtrunA17_Chr7g0251231 29.538 606 357 16 69 637 55 627 1.51e-26 115
Msa0411390 MtrunA17_Chr8g0369191 31.228 570 323 16 24 571 27 549 2.02e-25 111
Msa0411390 MtrunA17_Chr7g0244501 27.106 273 194 2 299 571 166 433 2.13e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0411390 AT5G55860.1 55.371 661 274 11 1 652 1 649 0.0 573
Msa0411390 AT1G12150.2 40.575 557 309 4 12 568 9 543 2.88e-107 335
Msa0411390 AT1G12150.1 40.575 557 309 4 12 568 9 543 2.88e-107 335
Msa0411390 AT4G17210.1 32.750 571 329 9 2 565 1 523 1.04e-62 217
Msa0411390 AT2G26570.1 29.372 589 384 9 9 573 151 731 3.40e-39 155
Msa0411390 AT2G26570.2 29.372 589 384 9 9 573 151 731 3.40e-39 155
Msa0411390 AT4G33390.1 28.497 579 369 10 24 571 156 720 1.63e-30 128
Msa0411390 AT5G42880.1 27.634 579 372 13 11 571 117 666 1.30e-24 109
Msa0411390 AT1G66840.2 27.916 523 321 10 32 531 11 500 1.19e-23 106
Msa0411390 AT1G66840.1 27.916 523 321 10 32 531 11 500 1.19e-23 106
Msa0411390 AT1G45545.2 25.758 594 377 14 3 576 135 684 4.70e-20 95.5
Msa0411390 AT1G45545.1 25.758 594 377 14 3 576 134 683 5.31e-20 95.1
Msa0411390 AT3G13190.4 32.432 296 107 7 300 592 93 298 2.22e-18 87.0
Msa0411390 AT3G13190.4 44.828 87 43 2 28 114 2 83 1.55e-11 66.6
Msa0411390 AT3G13190.2 32.432 296 107 7 300 592 93 298 2.22e-18 87.0
Msa0411390 AT3G13190.2 44.828 87 43 2 28 114 2 83 1.55e-11 66.6
Msa0411390 AT3G13190.1 32.432 296 107 7 300 592 93 298 2.22e-18 87.0
Msa0411390 AT3G13190.1 44.828 87 43 2 28 114 2 83 1.55e-11 66.6
Msa0411390 AT3G13190.3 32.432 296 107 7 300 592 93 298 2.22e-18 87.0
Msa0411390 AT3G13190.3 44.828 87 43 2 28 114 2 83 1.55e-11 66.6

Find 129 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGTTTGGTGACAAATTA+TGG 0.127940 3_2:+53652854 Msa0411390:three_prime_UTR
GAAATTACTTGCTTTGAAAA+AGG 0.226698 3_2:+53651547 Msa0411390:CDS
CTGATTCTTCAAGACTCTTC+AGG 0.256106 3_2:-53647900 None:intergenic
TTTGGTGAAGGTGCTTTCTC+TGG 0.271342 3_2:+53649122 Msa0411390:CDS
AAAAGAGCTGAACAAGTTAA+AGG 0.285147 3_2:+53650995 Msa0411390:CDS
GATAGAGATGTGTTTGAAAA+TGG 0.297959 3_2:-53647783 None:intergenic
GTTCTTTCACTAGAGAGTTT+TGG 0.299186 3_2:+53650944 Msa0411390:intron
GGACATGCATTATATGTAAA+TGG 0.299725 3_2:+53652876 Msa0411390:three_prime_UTR
AAAGCTGCTGTGTCTCTATT+TGG 0.302297 3_2:+53649104 Msa0411390:CDS
AATCATCACCTCAACATTAT+AGG 0.302365 3_2:+53652536 Msa0411390:CDS
TTTCATGTCAGCTAATTTAT+CGG 0.305879 3_2:-53652263 None:intergenic
ACCTCGGCAGAATAAGCTTT+TGG 0.314205 3_2:-53649167 None:intergenic
CCGCCGTGCTTCCTCAGTTT+CGG 0.320227 3_2:-53651972 None:intergenic
AACACAGGAGGCCTTGAAAA+AGG 0.341599 3_2:+53652390 Msa0411390:CDS
TCGAAGAAAATTAACATTAG+TGG 0.343212 3_2:+53652634 Msa0411390:CDS
TCAAATCATCGACTGTCCTT+TGG 0.346505 3_2:-53651076 None:intergenic
AGCTTTCATGACTGGTAGAT+TGG 0.347786 3_2:+53652963 Msa0411390:three_prime_UTR
TAAAACTTATTACTGAATCT+AGG 0.353268 3_2:+53651108 Msa0411390:CDS
ATTGTATGGTGTTAATAGTT+TGG 0.355345 3_2:+53652841 Msa0411390:three_prime_UTR
TATCTTAGATCTAAATCTTA+AGG 0.355565 3_2:-53648980 None:intergenic
CGCAATTTCATTCATTGTCT+CGG 0.364944 3_2:-53651612 None:intergenic
GAGAGCCAGTAGCAGTTTGC+CGG 0.372052 3_2:-53649019 None:intergenic
CTTAGATTCTTCAGCCGAAC+AGG 0.377156 3_2:-53651900 None:intergenic
ATAGTTTGGTGACAAATTAT+GGG 0.378834 3_2:+53652855 Msa0411390:three_prime_UTR
CAAATCATCGACTGTCCTTT+GGG 0.385506 3_2:-53651075 None:intergenic
TTCCGATGACATCTGTGTTT+CGG 0.387578 3_2:-53652515 None:intergenic
CTGATGGAGCAAACGGTGCC+TGG 0.387841 3_2:+53651192 Msa0411390:CDS
GGATCTGCTTCTTATTTGCC+TGG 0.393498 3_2:+53652694 Msa0411390:CDS
CTCTCTGAAAACTGTTACTT+CGG 0.395985 3_2:+53651679 Msa0411390:CDS
GCTGAAGAATCTAAGGTTAG+AGG 0.403747 3_2:+53651908 Msa0411390:CDS
CTGTTCGGCTGAAGAATCTA+AGG 0.404534 3_2:+53651901 Msa0411390:CDS
TGCTTCTTCCAATGCAAGCT+TGG 0.405983 3_2:-53652050 None:intergenic
GAAAGAACATTCTGAGTTGA+AGG 0.406873 3_2:+53651802 Msa0411390:CDS
AGCTGACACTCTTGCATTCG+AGG 0.408737 3_2:-53651318 None:intergenic
CCCAACTGTGGATTCCAATT+CGG 0.409056 3_2:-53651834 None:intergenic
GTCTGAGCTCGAAGCCTGTT+CGG 0.418955 3_2:+53651886 Msa0411390:CDS
TTGGTGAAGGTGCTTTCTCT+GGG 0.424791 3_2:+53649123 Msa0411390:CDS
ACTGTTACTTCGGAGCTTGA+TGG 0.425760 3_2:+53651689 Msa0411390:CDS
AAAATCCGGCAAACTGCTAC+TGG 0.430151 3_2:+53649014 Msa0411390:CDS
CTTGAAGAATCAGCTTTGTA+AGG 0.434955 3_2:+53647910 Msa0411390:five_prime_UTR
AAAAGAAATTTCAGCTGTAA+AGG 0.450558 3_2:+53651406 Msa0411390:CDS
AAGCTCTTGTGGAGCTTGAA+AGG 0.450937 3_2:+53651051 Msa0411390:CDS
TGCGGCTCTGCATACAGAAA+TGG 0.454267 3_2:+53651631 Msa0411390:CDS
CACGAGACCTATGTGTGAAC+GGG 0.457423 3_2:+53652993 Msa0411390:three_prime_UTR
GCAAACAAAGCTAGCATATG+TGG 0.459076 3_2:+53651439 Msa0411390:CDS
AGAGATGAGAGTGAGTAATC+AGG 0.463077 3_2:-53647708 None:intergenic
AGGGTGAGCTTCGAAGGTGG+CGG 0.468730 3_2:+53652446 Msa0411390:CDS
GTGTCGATCTCTCCAACCTC+TGG 0.475605 3_2:-53649059 None:intergenic
TACATGAAGTTGCGTCTCCT+TGG 0.480195 3_2:-53650967 None:intergenic
AGCAGCAAAGAAGGCAGTTG+AGG 0.480926 3_2:+53652426 Msa0411390:CDS
TCCAATGTTGTACGAGGAGG+TGG 0.492938 3_2:-53652577 None:intergenic
AGCTCTTGTGGAGCTTGAAA+GGG 0.495752 3_2:+53651052 Msa0411390:CDS
AGATATGAAAACTGCAACAC+AGG 0.498887 3_2:+53652375 Msa0411390:CDS
CGAAACTGAGGAAGCACGGC+GGG 0.499299 3_2:+53651973 Msa0411390:CDS
TGATATTAAGCTTTCATGAC+TGG 0.499587 3_2:+53652955 Msa0411390:three_prime_UTR
AGAAGCTGAAAATGCAATGA+AGG 0.500269 3_2:+53651355 Msa0411390:CDS
GAACAAAAGATCGTCTGACT+TGG 0.503808 3_2:+53651655 Msa0411390:CDS
AAAACTTATTACTGAATCTA+GGG 0.504876 3_2:+53651109 Msa0411390:CDS
AGCTTCACAACAAACTATAC+AGG 0.508704 3_2:-53652724 None:intergenic
AAAAGCAATATTGTTGAGGA+TGG 0.511312 3_2:+53652673 Msa0411390:CDS
AGAAAACACTCTTAGAAGCT+TGG 0.512858 3_2:+53651745 Msa0411390:CDS
GCATCTACATCGTCAGAATC+CGG 0.512989 3_2:+53652181 Msa0411390:CDS
TAAATTAGCTGACATGAAAG+TGG 0.513758 3_2:+53652267 Msa0411390:CDS
GTGTTTGAAAATGGAAAAGC+TGG 0.518968 3_2:-53647774 None:intergenic
GGGTGAGCTTCGAAGGTGGC+GGG 0.519859 3_2:+53652447 Msa0411390:CDS
TACTAAGGCTCAAGCTCTTG+TGG 0.520283 3_2:+53651040 Msa0411390:CDS
TCCGAATTGGAATCCACAGT+TGG 0.526090 3_2:+53651833 Msa0411390:CDS
AAAGAACGCTGAAACTACTA+AGG 0.527676 3_2:+53651025 Msa0411390:CDS
CAGTTGAGGGTGAGCTTCGA+AGG 0.529759 3_2:+53652440 Msa0411390:CDS
CACACATAGGTCTCGTGAAA+GGG 0.530322 3_2:-53652987 None:intergenic
GCAGCAAAGAAGGCAGTTGA+GGG 0.530329 3_2:+53652427 Msa0411390:CDS
CAAAAGTACGGTGACTCTGA+TGG 0.536667 3_2:+53651176 Msa0411390:CDS
AACAGACTGAAAAGGTGGGC+TGG 0.541022 3_2:-53649081 None:intergenic
GATGGCTGAAGCAGCAAAGA+AGG 0.543680 3_2:+53652417 Msa0411390:CDS
CCGAATTGGAATCCACAGTT+GGG 0.544037 3_2:+53651834 Msa0411390:CDS
GAAGAAAAGCAATATTGTTG+AGG 0.546596 3_2:+53652669 Msa0411390:CDS
AGATCTGAGGAAAACCCGTC+AGG 0.549936 3_2:+53651283 Msa0411390:CDS
TGAAGCTACCAAGCTTGCAT+TGG 0.554079 3_2:+53652042 Msa0411390:CDS
CGATATTGTCATTGCAGCAC+CGG 0.554335 3_2:-53652200 None:intergenic
AGTGAAAGCATTCTTGCGGT+TGG 0.554825 3_2:+53653031 Msa0411390:three_prime_UTR
TGATGATTTGTGTGTAGTTG+AGG 0.555687 3_2:+53652772 Msa0411390:three_prime_UTR
CCTAGTCTAAAACCAGAGGT+TGG 0.557450 3_2:+53649047 Msa0411390:CDS
ATCACAGCAACAGCAAGCAT+TGG 0.557927 3_2:+53651463 Msa0411390:CDS
GGATGAATCGTATTCCTGAC+GGG 0.561805 3_2:-53651297 None:intergenic
GGTGACTCTGATGGAGCAAA+CGG 0.565178 3_2:+53651185 Msa0411390:CDS
TCCACCTCCTCGTACAACAT+TGG 0.565733 3_2:+53652576 Msa0411390:CDS
GCAGCTTTAACAGACTGAAA+AGG 0.569244 3_2:-53649089 None:intergenic
TATCTCTCCCGTTCACACAT+AGG 0.569947 3_2:-53653000 None:intergenic
AAAGTTGGAGGCAACTCAGA+AGG 0.575379 3_2:+53652345 Msa0411390:CDS
TCACACATAGGTCTCGTGAA+AGG 0.576731 3_2:-53652988 None:intergenic
AGTGGATGCTGCGAAAGCAC+AGG 0.579774 3_2:+53652285 Msa0411390:CDS
AGGAGTTCGAGTCTCTAAAA+CGG 0.584086 3_2:+53652227 Msa0411390:CDS
GCTGTGTCTCTATTTGGTGA+AGG 0.587275 3_2:+53649110 Msa0411390:CDS
AGTCAGGCAAAACAAAAGTA+CGG 0.587853 3_2:+53651164 Msa0411390:CDS
GCTTTAACAGACTGAAAAGG+TGG 0.589140 3_2:-53649086 None:intergenic
GATTTAGATCTAAGATACAA+TGG 0.590064 3_2:+53648986 Msa0411390:exon
AGGATGAATCGTATTCCTGA+CGG 0.591780 3_2:-53651298 None:intergenic
AGTTAGAAAATGCAGTTCAA+AGG 0.592541 3_2:+53651222 Msa0411390:CDS
AAGCGGCAGAAGCTGCAGCT+CGG 0.596772 3_2:+53652485 Msa0411390:CDS
AGCACAGGTAGAAGCTGTGA+AGG 0.598567 3_2:+53652300 Msa0411390:CDS
ACATTAGTGGTATCTTTCAG+AGG 0.602509 3_2:+53652647 Msa0411390:CDS
TCACGAGACCTATGTGTGAA+CGG 0.602611 3_2:+53652992 Msa0411390:three_prime_UTR
TAAGGTTAGAGGTGCATCTG+AGG 0.604601 3_2:+53651919 Msa0411390:CDS
CGAGACAATGAATGAAATTG+CGG 0.608177 3_2:+53651613 Msa0411390:CDS
AGATTACAGTGCTAACTGAA+AGG 0.611910 3_2:+53652143 Msa0411390:CDS
AACTATACAGGATTCTCACC+AGG 0.615709 3_2:-53652712 None:intergenic
TTGAGGGTGAGCTTCGAAGG+TGG 0.618872 3_2:+53652443 Msa0411390:CDS
CTCTCCTAGTCTAAAACCAG+AGG 0.621726 3_2:+53649043 Msa0411390:CDS
GCCAAAAGCTTATTCTGCCG+AGG 0.626983 3_2:+53649166 Msa0411390:CDS
GTCTCTAAAACGGAAAGTCG+AGG 0.629664 3_2:+53652237 Msa0411390:CDS
TGTTAATGAAGTGTGCTGGA+AGG 0.629758 3_2:+53652810 Msa0411390:three_prime_UTR
CATCCGAAACTGAGGAAGCA+CGG 0.630067 3_2:+53651969 Msa0411390:CDS
TTCACTTCCAATGTTGTACG+AGG 0.630608 3_2:-53652583 None:intergenic
TGGAGCTTGAAAGGGCCCAA+AGG 0.633150 3_2:+53651060 Msa0411390:CDS
CTTGGTAGAGACTCTGAAGG+TGG 0.634968 3_2:+53651763 Msa0411390:CDS
ACTTCCAATGTTGTACGAGG+AGG 0.636035 3_2:-53652580 None:intergenic
AGCCGAAACACAGATGTCAT+CGG 0.637623 3_2:+53652513 Msa0411390:CDS
TGCTGCAATGACAATATCGA+CGG 0.647577 3_2:+53652204 Msa0411390:CDS
TCAGTTAACATCCGAAACTG+AGG 0.648666 3_2:+53651961 Msa0411390:CDS
CTTTAACAGACTGAAAAGGT+GGG 0.663688 3_2:-53649085 None:intergenic
TGTGAAGGCTAGCGAAAACG+AGG 0.665471 3_2:+53652315 Msa0411390:CDS
TATGAAAACTGCAACACAGG+AGG 0.667826 3_2:+53652378 Msa0411390:CDS
GACATGCAGATTCCCAACTG+TGG 0.670611 3_2:-53651846 None:intergenic
TGGTGAAGGTGCTTTCTCTG+GGG 0.671640 3_2:+53649124 Msa0411390:CDS
GTAAAGTGAAAGCATTCTTG+CGG 0.674402 3_2:+53653027 Msa0411390:three_prime_UTR
ATGCTGCTAAGCAAGATCTG+AGG 0.688485 3_2:+53651270 Msa0411390:CDS
AAGCTTGGTAGAGACTCTGA+AGG 0.694026 3_2:+53651760 Msa0411390:CDS
TGCAATGACAATATCGACGG+AGG 0.702839 3_2:+53652207 Msa0411390:CDS
CCGAAACTGAGGAAGCACGG+CGG 0.740064 3_2:+53651972 Msa0411390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATATTAAGTTGAATTT+TGG + chr3_2:53648349-53648368 Msa0411390:intron 10.0%
!!! TAAAAATGTTTACATTTTTT+GGG + chr3_2:53648405-53648424 Msa0411390:intron 10.0%
!!! TGTTATTTCTATTAAAAAAT+GGG - chr3_2:53650091-53650110 None:intergenic 10.0%
!!! GTAAAAATGTTTACATTTTT+TGG + chr3_2:53648404-53648423 Msa0411390:intron 15.0%
!!! TATATTATTGTGGTTTTTAA+AGG + chr3_2:53648554-53648573 Msa0411390:intron 15.0%
!!! ATATTATTGTGGTTTTTAAA+GGG + chr3_2:53648555-53648574 Msa0411390:intron 15.0%
!!! TAATCTTTTAAATTGGAATT+TGG - chr3_2:53648807-53648826 None:intergenic 15.0%
!!! CAACAAATAATCTTTTAAAT+TGG - chr3_2:53648814-53648833 None:intergenic 15.0%
!!! TATAAATTACTAGTTTATGA+TGG + chr3_2:53648898-53648917 Msa0411390:intron 15.0%
!!! GTTATTTCTATTAAAAAATG+GGG - chr3_2:53650090-53650109 None:intergenic 15.0%
!!! CTGTTATTTCTATTAAAAAA+TGG - chr3_2:53650092-53650111 None:intergenic 15.0%
!!! CTTTATTAGTAATAACTTTT+CGG + chr3_2:53650203-53650222 Msa0411390:intron 15.0%
!!! TTTTAGATAAAAAATGCAAT+AGG - chr3_2:53650265-53650284 None:intergenic 15.0%
!! AAAGATATTAAATCTGTATT+TGG + chr3_2:53650448-53650467 Msa0411390:intron 15.0%
!! ACTTAATGTTATTATTTACA+TGG - chr3_2:53650573-53650592 None:intergenic 15.0%
!! AATAACATTAAGTAAAACTA+CGG + chr3_2:53650580-53650599 Msa0411390:intron 15.0%
!! AAAAAATTTGATACATGTTA+TGG - chr3_2:53650717-53650736 None:intergenic 15.0%
!!! AAAAAATCAAAACTTTTAAG+AGG - chr3_2:53650830-53650849 None:intergenic 15.0%
!!! ATAGATTTAAATTTTTCTAC+TGG - chr3_2:53652904-53652923 None:intergenic 15.0%
!! GTAGAAAAATTTAAATCTAT+TGG + chr3_2:53652904-53652923 Msa0411390:three_prime_UTR 15.0%
!!! CAACTTAATATTTTAACCAA+AGG - chr3_2:53648344-53648363 None:intergenic 20.0%
!! ATATAAAAGAAGCTATTGAT+AGG + chr3_2:53648629-53648648 Msa0411390:intron 20.0%
!! TATGTTTGAAGATATATTTC+TGG + chr3_2:53648845-53648864 Msa0411390:intron 20.0%
!!! AAGATATATTTCTGGAATTT+GGG + chr3_2:53648853-53648872 Msa0411390:intron 20.0%
!! TATCTTAGATCTAAATCTTA+AGG - chr3_2:53648983-53649002 None:intergenic 20.0%
!!! TCTAAAACAAAAAACAACAA+TGG + chr3_2:53649242-53649261 Msa0411390:intron 20.0%
!!! AAACAGATTCTAAAATTTAC+AGG - chr3_2:53649282-53649301 None:intergenic 20.0%
!! TCTAACTTTATGCTTATAAT+AGG + chr3_2:53649621-53649640 Msa0411390:intron 20.0%
!! CTAACTTTATGCTTATAATA+GGG + chr3_2:53649622-53649641 Msa0411390:intron 20.0%
!! AGAAAATAAAGATAATTCCA+GGG - chr3_2:53649680-53649699 None:intergenic 20.0%
!! TGAATATCAAATAGAAGAAT+AGG - chr3_2:53650145-53650164 None:intergenic 20.0%
!!! ACAATTAGAAACAAGATTTT+TGG + chr3_2:53650400-53650419 Msa0411390:intron 20.0%
!!! CAATTAGAAACAAGATTTTT+GGG + chr3_2:53650401-53650420 Msa0411390:intron 20.0%
!!! AATTAGAAACAAGATTTTTG+GGG + chr3_2:53650402-53650421 Msa0411390:intron 20.0%
!!! TTGTACAAATCTTTGATAAT+GGG - chr3_2:53650665-53650684 None:intergenic 20.0%
!! TAAAACTTATTACTGAATCT+AGG + chr3_2:53651108-53651127 Msa0411390:CDS 20.0%
!! AAAACTTATTACTGAATCTA+GGG + chr3_2:53651109-53651128 Msa0411390:CDS 20.0%
!!! TTTATTGGTTTTGAGAATCT+GGG + chr3_2:53647998-53648017 Msa0411390:intron 25.0%
! AAAGGAACCATAATAAAGTA+AGG - chr3_2:53648081-53648100 None:intergenic 25.0%
!!! TGATGTTTTTTTCATTCTGA+AGG + chr3_2:53648297-53648316 Msa0411390:intron 25.0%
! TCCTGAAAATTCTAATGTAT+TGG + chr3_2:53648457-53648476 Msa0411390:intron 25.0%
! CCTGAAAATTCTAATGTATT+GGG + chr3_2:53648458-53648477 Msa0411390:intron 25.0%
! GTTTAACAAGCATTATTAGT+TGG + chr3_2:53648509-53648528 Msa0411390:intron 25.0%
! TGTGTAACTGTATATTATTG+TGG + chr3_2:53648544-53648563 Msa0411390:intron 25.0%
!!! GAAGATATATTTCTGGAATT+TGG + chr3_2:53648852-53648871 Msa0411390:intron 25.0%
!! GATTTAGATCTAAGATACAA+TGG + chr3_2:53648986-53649005 Msa0411390:exon 25.0%
!!! AATTGTCAGTTTTGATTAGT+AGG + chr3_2:53649190-53649209 Msa0411390:intron 25.0%
! CAAATAAGGTAATCCAAATT+AGG + chr3_2:53649538-53649557 Msa0411390:intron 25.0%
! GGCAAATATAAAACCTAATT+TGG - chr3_2:53649554-53649573 None:intergenic 25.0%
! CAGAAAATAAAGATAATTCC+AGG - chr3_2:53649681-53649700 None:intergenic 25.0%
! TTTCTATAGAAAAACTGCAA+CGG + chr3_2:53649770-53649789 Msa0411390:intron 25.0%
! AACATATGAAAAGAAACACA+AGG - chr3_2:53650119-53650138 None:intergenic 25.0%
!! TGATTATCTGAAGTTGTAAT+TGG + chr3_2:53650301-53650320 Msa0411390:intron 25.0%
!! GATTATCTGAAGTTGTAATT+GGG + chr3_2:53650302-53650321 Msa0411390:intron 25.0%
!! ATTATCTGAAGTTGTAATTG+GGG + chr3_2:53650303-53650322 Msa0411390:intron 25.0%
! GTACAGAGTATAGATAATTT+AGG - chr3_2:53650354-53650373 None:intergenic 25.0%
!!! ATCTTGTTTCTAATTGTCAT+AGG - chr3_2:53650397-53650416 None:intergenic 25.0%
! ATCTGTATTTGGTTATAAGA+TGG + chr3_2:53650459-53650478 Msa0411390:intron 25.0%
! ATGAGATATTCCTACTTAAA+TGG - chr3_2:53650495-53650514 None:intergenic 25.0%
! ATTTAAGTAGGAATATCTCA+TGG + chr3_2:53650494-53650513 Msa0411390:intron 25.0%
! TACATGGAAGATATAAAACA+TGG - chr3_2:53650557-53650576 None:intergenic 25.0%
! CTTGTACAAATCTTTGATAA+TGG - chr3_2:53650666-53650685 None:intergenic 25.0%
! TTATCAAAGATTTGTACAAG+TGG + chr3_2:53650666-53650685 Msa0411390:intron 25.0%
! AATAAGATTACATAGTTCAG+TGG - chr3_2:53650854-53650873 None:intergenic 25.0%
!! ATTTTCTCCTTTTCATTTTG+TGG + chr3_2:53650910-53650929 Msa0411390:intron 25.0%
! ATGAAAACCACAAAATGAAA+AGG - chr3_2:53650920-53650939 None:intergenic 25.0%
! AAAAGAAATTTCAGCTGTAA+AGG + chr3_2:53651406-53651425 Msa0411390:CDS 25.0%
!! TTTCTTTTTGGATTGTTCAA+GGG - chr3_2:53651531-53651550 None:intergenic 25.0%
!! ATTTCTTTTTGGATTGTTCA+AGG - chr3_2:53651532-53651551 None:intergenic 25.0%
!! CAAAGCAAGTAATTTCTTTT+TGG - chr3_2:53651543-53651562 None:intergenic 25.0%
!!! GAAATTACTTGCTTTGAAAA+AGG + chr3_2:53651547-53651566 Msa0411390:CDS 25.0%
!! TTCAAGACTTTTTGTGATTT+CGG - chr3_2:53651582-53651601 None:intergenic 25.0%
! TTTCATGTCAGCTAATTTAT+CGG - chr3_2:53652266-53652285 None:intergenic 25.0%
!! TTTTGAATCCTATAATGTTG+AGG - chr3_2:53652547-53652566 None:intergenic 25.0%
! TCGAAGAAAATTAACATTAG+TGG + chr3_2:53652634-53652653 Msa0411390:CDS 25.0%
!! ATTGTATGGTGTTAATAGTT+TGG + chr3_2:53652841-53652860 Msa0411390:three_prime_UTR 25.0%
!! AATAGTTTGGTGACAAATTA+TGG + chr3_2:53652854-53652873 Msa0411390:three_prime_UTR 25.0%
!! ATAGTTTGGTGACAAATTAT+GGG + chr3_2:53652855-53652874 Msa0411390:three_prime_UTR 25.0%
GATAGAGATGTGTTTGAAAA+TGG - chr3_2:53647786-53647805 None:intergenic 30.0%
! GTTAAAGATGGAAGCTTTAT+TGG + chr3_2:53647983-53648002 Msa0411390:intron 30.0%
!!! CTTTATTGGTTTTGAGAATC+TGG + chr3_2:53647997-53648016 Msa0411390:intron 30.0%
! AGTATTTTGTGTGTTCATGA+TGG + chr3_2:53648027-53648046 Msa0411390:intron 30.0%
! GTATTTTGTGTGTTCATGAT+GGG + chr3_2:53648028-53648047 Msa0411390:intron 30.0%
TGAGCTACCTTACTTTATTA+TGG + chr3_2:53648071-53648090 Msa0411390:intron 30.0%
GAAACCACAAAACAAAACAA+AGG - chr3_2:53648099-53648118 None:intergenic 30.0%
! TCATTTTCATGTTCTGTTTG+CGG + chr3_2:53648117-53648136 Msa0411390:intron 30.0%
!!! TCTGTCGTTTTAAACATACT+TGG + chr3_2:53648155-53648174 Msa0411390:intron 30.0%
TTTCAAACTGAAAAAGCCTT+TGG + chr3_2:53648325-53648344 Msa0411390:intron 30.0%
! CCCAATACATTAGAATTTTC+AGG - chr3_2:53648461-53648480 None:intergenic 30.0%
!! GGTTTTTAAAGGGTCTTAAT+TGG + chr3_2:53648565-53648584 Msa0411390:intron 30.0%
!! TTTTAAAGGGTCTTAATTGG+TGG + chr3_2:53648568-53648587 Msa0411390:intron 30.0%
AAAGTCAAGATAGACATGAT+TGG - chr3_2:53648751-53648770 None:intergenic 30.0%
!! TCTTCTACCATGTTTTTAAC+AGG + chr3_2:53648944-53648963 Msa0411390:intron 30.0%
AAACCAACCTGTTAAAAACA+TGG - chr3_2:53648954-53648973 None:intergenic 30.0%
ATACAATGGTTGCAAAAATC+CGG + chr3_2:53649000-53649019 Msa0411390:exon 30.0%
!!! AATAAGCTTTTGGCTTCTTA+TGG - chr3_2:53649160-53649179 None:intergenic 30.0%
ATCAAAACTGACAATTACCT+CGG - chr3_2:53649186-53649205 None:intergenic 30.0%
TCTTAGCTACAAATTCTTTG+TGG + chr3_2:53649216-53649235 Msa0411390:intron 30.0%
AACAAGCTGAAAACAAGTTA+TGG + chr3_2:53649442-53649461 Msa0411390:intron 30.0%
CTAGTAGGTAAACTCAAATA+AGG + chr3_2:53649524-53649543 Msa0411390:intron 30.0%
AAGTGAAAAGTGAGATGTAA+GGG - chr3_2:53649752-53649771 None:intergenic 30.0%
AAAGTGAAAAGTGAGATGTA+AGG - chr3_2:53649753-53649772 None:intergenic 30.0%
AACATAAAAGGATGTTGACA+TGG - chr3_2:53649948-53649967 None:intergenic 30.0%
! AAAAAATGGGGTATTTCAAC+AGG - chr3_2:53650078-53650097 None:intergenic 30.0%
AGGCTGAAAGTTCTATTATA+AGG - chr3_2:53650245-53650264 None:intergenic 30.0%
GAATATCTCATGGATATGAT+AGG + chr3_2:53650504-53650523 Msa0411390:intron 30.0%
!! AATGCTACATCTTTTTCACT+TGG + chr3_2:53650635-53650654 Msa0411390:intron 30.0%
!!! TAACTTGTTCAGCTCTTTTT+CGG - chr3_2:53650994-53651013 None:intergenic 30.0%
AAAAGAGCTGAACAAGTTAA+AGG + chr3_2:53650995-53651014 Msa0411390:CDS 30.0%
! ATTTTCTAACTCTTCTTTCC+AGG - chr3_2:53651213-53651232 None:intergenic 30.0%
AGTTAGAAAATGCAGTTCAA+AGG + chr3_2:53651222-53651241 Msa0411390:CDS 30.0%
! TCAAGACTTTTTGTGATTTC+GGG - chr3_2:53651581-53651600 None:intergenic 30.0%
GAAAAAACTGAAAGAAGCAA+CGG + chr3_2:53652075-53652094 Msa0411390:CDS 30.0%
TAAATTAGCTGACATGAAAG+TGG + chr3_2:53652267-53652286 Msa0411390:CDS 30.0%
!!! AAACGAGGTTTTGAAAAAGT+TGG + chr3_2:53652330-53652349 Msa0411390:CDS 30.0%
AATCATCACCTCAACATTAT+AGG + chr3_2:53652536-53652555 Msa0411390:CDS 30.0%
GAAGAAAAGCAATATTGTTG+AGG + chr3_2:53652669-53652688 Msa0411390:CDS 30.0%
AAAAGCAATATTGTTGAGGA+TGG + chr3_2:53652673-53652692 Msa0411390:CDS 30.0%
! ATTTTGTTAATGAAGTGTGC+TGG + chr3_2:53652806-53652825 Msa0411390:three_prime_UTR 30.0%
!!! GGAAGGAAAGTTTTATTGTA+TGG + chr3_2:53652827-53652846 Msa0411390:three_prime_UTR 30.0%
GGACATGCATTATATGTAAA+TGG + chr3_2:53652876-53652895 Msa0411390:three_prime_UTR 30.0%
TGATATTAAGCTTTCATGAC+TGG + chr3_2:53652955-53652974 Msa0411390:three_prime_UTR 30.0%
GTGTTTGAAAATGGAAAAGC+TGG - chr3_2:53647777-53647796 None:intergenic 35.0%
! CTTGAAGAATCAGCTTTGTA+AGG + chr3_2:53647910-53647929 Msa0411390:five_prime_UTR 35.0%
!! GTTGCTGATTCAGTTAAAGA+TGG + chr3_2:53647971-53647990 Msa0411390:intron 35.0%
!!! GGTTCCTTTGTTTTGTTTTG+TGG + chr3_2:53648092-53648111 Msa0411390:intron 35.0%
TCAGACACAAACAAAGTCAA+GGG - chr3_2:53648230-53648249 None:intergenic 35.0%
TTCAGACACAAACAAAGTCA+AGG - chr3_2:53648231-53648250 None:intergenic 35.0%
TCTTAATTGGTGGAAGATTG+TGG + chr3_2:53648578-53648597 Msa0411390:intron 35.0%
CATACAATCAGCAAAACTAC+TGG - chr3_2:53648723-53648742 None:intergenic 35.0%
!! CAGTAGTTTTGCTGATTGTA+TGG + chr3_2:53648721-53648740 Msa0411390:intron 35.0%
!! CTACCATGTTTTTAACAGGT+TGG + chr3_2:53648948-53648967 Msa0411390:intron 35.0%
CTTTAACAGACTGAAAAGGT+GGG - chr3_2:53649088-53649107 None:intergenic 35.0%
! ACTGTTTTCACAAGCTCTTA+TGG + chr3_2:53649407-53649426 Msa0411390:intron 35.0%
AGACTATTAGAGAGAGCTTA+TGG - chr3_2:53649486-53649505 None:intergenic 35.0%
! AAATGCTTTTCCATGCTAGT+AGG + chr3_2:53649509-53649528 Msa0411390:intron 35.0%
! TTTGAGTTTACCTACTAGCA+TGG - chr3_2:53649522-53649541 None:intergenic 35.0%
! AAAGTGCAGACAGTGTTTTA+TGG + chr3_2:53649649-53649668 Msa0411390:intron 35.0%
! AGTGTTTTATGGATTTTCCC+TGG + chr3_2:53649660-53649679 Msa0411390:intron 35.0%
GAAAGAAGAAAGAGTGAGTT+AGG - chr3_2:53649870-53649889 None:intergenic 35.0%
! CATCCTTTTATGTTTCAGCA+TGG + chr3_2:53649954-53649973 Msa0411390:intron 35.0%
CTACCATGCTGAAACATAAA+AGG - chr3_2:53649960-53649979 None:intergenic 35.0%
CATATACAAGGAAGACATGA+TGG - chr3_2:53650006-53650025 None:intergenic 35.0%
ATGTCTTCCTTGTATATGTG+TGG + chr3_2:53650008-53650027 Msa0411390:intron 35.0%
GTGTATACCACACATATACA+AGG - chr3_2:53650018-53650037 None:intergenic 35.0%
! TGTGATGTTGCCATTTAAGT+AGG + chr3_2:53650482-53650501 Msa0411390:intron 35.0%
GTTCTTGAATTGAATGAAGC+AGG - chr3_2:53650535-53650554 None:intergenic 35.0%
TGCATTCTAAGCTTGAAAGA+AGG - chr3_2:53650891-53650910 None:intergenic 35.0%
! GTTCTTTCACTAGAGAGTTT+TGG + chr3_2:53650944-53650963 Msa0411390:intron 35.0%
AAAGAACGCTGAAACTACTA+AGG + chr3_2:53651025-53651044 Msa0411390:CDS 35.0%
AGTCAGGCAAAACAAAAGTA+CGG + chr3_2:53651164-53651183 Msa0411390:CDS 35.0%
AGAAGCTGAAAATGCAATGA+AGG + chr3_2:53651355-53651374 Msa0411390:CDS 35.0%
AAAAAGTCTTGAAGCACAGT+TGG + chr3_2:53651589-53651608 Msa0411390:CDS 35.0%
CGCAATTTCATTCATTGTCT+CGG - chr3_2:53651615-53651634 None:intergenic 35.0%
CGAGACAATGAATGAAATTG+CGG + chr3_2:53651613-53651632 Msa0411390:CDS 35.0%
! CTCTCTGAAAACTGTTACTT+CGG + chr3_2:53651679-53651698 Msa0411390:CDS 35.0%
AGAAAACACTCTTAGAAGCT+TGG + chr3_2:53651745-53651764 Msa0411390:CDS 35.0%
! GAAAGAACATTCTGAGTTGA+AGG + chr3_2:53651802-53651821 Msa0411390:CDS 35.0%
AGATTACAGTGCTAACTGAA+AGG + chr3_2:53652143-53652162 Msa0411390:CDS 35.0%
AGATATGAAAACTGCAACAC+AGG + chr3_2:53652375-53652394 Msa0411390:CDS 35.0%
ACATTAGTGGTATCTTTCAG+AGG + chr3_2:53652647-53652666 Msa0411390:CDS 35.0%
AGCTTCACAACAAACTATAC+AGG - chr3_2:53652727-53652746 None:intergenic 35.0%
! TGATGATTTGTGTGTAGTTG+AGG + chr3_2:53652772-53652791 Msa0411390:three_prime_UTR 35.0%
!! GTAAAGTGAAAGCATTCTTG+CGG + chr3_2:53653027-53653046 Msa0411390:three_prime_UTR 35.0%
CTGATTCTTCAAGACTCTTC+AGG - chr3_2:53647903-53647922 None:intergenic 40.0%
!!! CATGATGGGTTTTTGTTGTG+TGG + chr3_2:53648042-53648061 Msa0411390:intron 40.0%
!!! TCTGGTTTTAGACTAGGAGA+GGG - chr3_2:53649044-53649063 None:intergenic 40.0%
GCTTTAACAGACTGAAAAGG+TGG - chr3_2:53649089-53649108 None:intergenic 40.0%
! GCAGCTTTAACAGACTGAAA+AGG - chr3_2:53649092-53649111 None:intergenic 40.0%
AAAGCTGCTGTGTCTCTATT+TGG + chr3_2:53649104-53649123 Msa0411390:CDS 40.0%
!!! GCTTTTGGCTTCTTATGGAT+AGG - chr3_2:53649155-53649174 None:intergenic 40.0%
AAGCTCTTATGGAGAGCTTA+TGG + chr3_2:53649418-53649437 Msa0411390:intron 40.0%
GAGCTTATGGAAACAGCTTA+TGG - chr3_2:53649473-53649492 None:intergenic 40.0%
CTATAGAAAAACTGCAACGG+TGG + chr3_2:53649773-53649792 Msa0411390:intron 40.0%
GTTTGCATAACATCGAAGTC+TGG - chr3_2:53649815-53649834 None:intergenic 40.0%
GGAGTGAGAATCTATGTAGA+AGG - chr3_2:53649894-53649913 None:intergenic 40.0%
! ATCTGAAGTTGTAATTGGGG+TGG + chr3_2:53650306-53650325 Msa0411390:intron 40.0%
! CAAATCATCGACTGTCCTTT+GGG - chr3_2:53651078-53651097 None:intergenic 40.0%
! TCAAATCATCGACTGTCCTT+TGG - chr3_2:53651079-53651098 None:intergenic 40.0%
AACAGAAGCTGCAAAAAGTC+AGG + chr3_2:53651148-53651167 Msa0411390:CDS 40.0%
AGGATGAATCGTATTCCTGA+CGG - chr3_2:53651301-53651320 None:intergenic 40.0%
GCAAACAAAGCTAGCATATG+TGG + chr3_2:53651439-53651458 Msa0411390:CDS 40.0%
GAACAAAAGATCGTCTGACT+TGG + chr3_2:53651655-53651674 Msa0411390:CDS 40.0%
GAAGGAAAAAGAGTCCGAAT+TGG + chr3_2:53651820-53651839 Msa0411390:CDS 40.0%
! GCTGAAGAATCTAAGGTTAG+AGG + chr3_2:53651908-53651927 Msa0411390:CDS 40.0%
TCAGTTAACATCCGAAACTG+AGG + chr3_2:53651961-53651980 Msa0411390:CDS 40.0%
TGCTGCAATGACAATATCGA+CGG + chr3_2:53652204-53652223 Msa0411390:CDS 40.0%
! AGGAGTTCGAGTCTCTAAAA+CGG + chr3_2:53652227-53652246 Msa0411390:CDS 40.0%
!!! CGAGGTTTTGAAAAAGTTGG+AGG + chr3_2:53652333-53652352 Msa0411390:CDS 40.0%
TATGAAAACTGCAACACAGG+AGG + chr3_2:53652378-53652397 Msa0411390:CDS 40.0%
TTCCGATGACATCTGTGTTT+CGG - chr3_2:53652518-53652537 None:intergenic 40.0%
TTCACTTCCAATGTTGTACG+AGG - chr3_2:53652586-53652605 None:intergenic 40.0%
AACTATACAGGATTCTCACC+AGG - chr3_2:53652715-53652734 None:intergenic 40.0%
TGTTAATGAAGTGTGCTGGA+AGG + chr3_2:53652810-53652829 Msa0411390:three_prime_UTR 40.0%
AGCTTTCATGACTGGTAGAT+TGG + chr3_2:53652963-53652982 Msa0411390:three_prime_UTR 40.0%
! GAGAGAGAGAGAGATGGTTT+TGG - chr3_2:53647820-53647839 None:intergenic 45.0%
!!! GGTTTTGAGAATCTGGGTTG+TGG + chr3_2:53648004-53648023 Msa0411390:intron 45.0%
GAGCTTTCAGCTGTGCAAAT+AGG - chr3_2:53648439-53648458 None:intergenic 45.0%
GGTGGAAGATTGTGGAATCT+TGG + chr3_2:53648586-53648605 Msa0411390:intron 45.0%
!! CAGCAAAACTACTGGCTCTT+AGG - chr3_2:53648715-53648734 None:intergenic 45.0%
AAAATCCGGCAAACTGCTAC+TGG + chr3_2:53649014-53649033 Msa0411390:CDS 45.0%
!!! CTCTGGTTTTAGACTAGGAG+AGG - chr3_2:53649045-53649064 None:intergenic 45.0%
! CTCTCCTAGTCTAAAACCAG+AGG + chr3_2:53649043-53649062 Msa0411390:CDS 45.0%
!!! CCAACCTCTGGTTTTAGACT+AGG - chr3_2:53649050-53649069 None:intergenic 45.0%
! CCTAGTCTAAAACCAGAGGT+TGG + chr3_2:53649047-53649066 Msa0411390:CDS 45.0%
! GCTGTGTCTCTATTTGGTGA+AGG + chr3_2:53649110-53649129 Msa0411390:CDS 45.0%
!! TTTGGTGAAGGTGCTTTCTC+TGG + chr3_2:53649122-53649141 Msa0411390:CDS 45.0%
!! TTGGTGAAGGTGCTTTCTCT+GGG + chr3_2:53649123-53649142 Msa0411390:CDS 45.0%
! ACCTCGGCAGAATAAGCTTT+TGG - chr3_2:53649170-53649189 None:intergenic 45.0%
TGGGAAGAAACTCAAGAGTC+TGG - chr3_2:53649575-53649594 None:intergenic 45.0%
AGTTTCTTCCCATTGCAAGC+AGG + chr3_2:53649583-53649602 Msa0411390:intron 45.0%
! TCAAAGTGCCTGCTTGCAAT+GGG - chr3_2:53649594-53649613 None:intergenic 45.0%
! ATCAAAGTGCCTGCTTGCAA+TGG - chr3_2:53649595-53649614 None:intergenic 45.0%
ATGCAAACTTCTTTGCCCGA+AGG + chr3_2:53649827-53649846 Msa0411390:intron 45.0%
!! GTTAGGAGAGTGCGGTTTTT+CGG - chr3_2:53649853-53649872 None:intergenic 45.0%
AAGAGTGAGTTAGGAGAGTG+CGG - chr3_2:53649861-53649880 None:intergenic 45.0%
TGAATGGACAAGGAGGGTAA+GGG - chr3_2:53649922-53649941 None:intergenic 45.0%
GATGTTGACATGGCAGTGAA+TGG - chr3_2:53649938-53649957 None:intergenic 45.0%
! GTTGTAATTGGGGTGGACTT+TGG + chr3_2:53650313-53650332 Msa0411390:intron 45.0%
GGGTGTCTCAACAATGTTCT+TGG + chr3_2:53650422-53650441 Msa0411390:intron 45.0%
!! TCACTAGAGAGTTTTGGCCA+AGG + chr3_2:53650950-53650969 Msa0411390:intron 45.0%
TACATGAAGTTGCGTCTCCT+TGG - chr3_2:53650970-53650989 None:intergenic 45.0%
TACTAAGGCTCAAGCTCTTG+TGG + chr3_2:53651040-53651059 Msa0411390:CDS 45.0%
AAGCTCTTGTGGAGCTTGAA+AGG + chr3_2:53651051-53651070 Msa0411390:CDS 45.0%
AGCTCTTGTGGAGCTTGAAA+GGG + chr3_2:53651052-53651071 Msa0411390:CDS 45.0%
! CAAAAGTACGGTGACTCTGA+TGG + chr3_2:53651176-53651195 Msa0411390:CDS 45.0%
ATGCTGCTAAGCAAGATCTG+AGG + chr3_2:53651270-53651289 Msa0411390:CDS 45.0%
GGATGAATCGTATTCCTGAC+GGG - chr3_2:53651300-53651319 None:intergenic 45.0%
ATCACAGCAACAGCAAGCAT+TGG + chr3_2:53651463-53651482 Msa0411390:CDS 45.0%
AAGCTTGGTAGAGACTCTGA+AGG + chr3_2:53651760-53651779 Msa0411390:CDS 45.0%
TCCGAATTGGAATCCACAGT+TGG + chr3_2:53651833-53651852 Msa0411390:CDS 45.0%
CCCAACTGTGGATTCCAATT+CGG - chr3_2:53651837-53651856 None:intergenic 45.0%
CCGAATTGGAATCCACAGTT+GGG + chr3_2:53651834-53651853 Msa0411390:CDS 45.0%
CTTAGATTCTTCAGCCGAAC+AGG - chr3_2:53651903-53651922 None:intergenic 45.0%
CTGTTCGGCTGAAGAATCTA+AGG + chr3_2:53651901-53651920 Msa0411390:CDS 45.0%
! TAAGGTTAGAGGTGCATCTG+AGG + chr3_2:53651919-53651938 Msa0411390:CDS 45.0%
TGAAGCTACCAAGCTTGCAT+TGG + chr3_2:53652042-53652061 Msa0411390:CDS 45.0%
TGCTTCTTCCAATGCAAGCT+TGG - chr3_2:53652053-53652072 None:intergenic 45.0%
GCATCTACATCGTCAGAATC+CGG + chr3_2:53652181-53652200 Msa0411390:CDS 45.0%
CGATATTGTCATTGCAGCAC+CGG - chr3_2:53652203-53652222 None:intergenic 45.0%
TGCAATGACAATATCGACGG+AGG + chr3_2:53652207-53652226 Msa0411390:CDS 45.0%
!! GTCTCTAAAACGGAAAGTCG+AGG + chr3_2:53652237-53652256 Msa0411390:CDS 45.0%
AAAGTTGGAGGCAACTCAGA+AGG + chr3_2:53652345-53652364 Msa0411390:CDS 45.0%
AACACAGGAGGCCTTGAAAA+AGG + chr3_2:53652390-53652409 Msa0411390:CDS 45.0%
GGAGCGAGAACAGAAAAAAG+CGG + chr3_2:53652468-53652487 Msa0411390:CDS 45.0%
AGCCGAAACACAGATGTCAT+CGG + chr3_2:53652513-53652532 Msa0411390:CDS 45.0%
ACTTCCAATGTTGTACGAGG+AGG - chr3_2:53652583-53652602 None:intergenic 45.0%
! GGATCTGCTTCTTATTTGCC+TGG + chr3_2:53652694-53652713 Msa0411390:CDS 45.0%
CACACATAGGTCTCGTGAAA+GGG - chr3_2:53652990-53653009 None:intergenic 45.0%
TCACACATAGGTCTCGTGAA+AGG - chr3_2:53652991-53653010 None:intergenic 45.0%
TCACGAGACCTATGTGTGAA+CGG + chr3_2:53652992-53653011 Msa0411390:three_prime_UTR 45.0%
TATCTCTCCCGTTCACACAT+AGG - chr3_2:53653003-53653022 None:intergenic 45.0%
GAGAGAGAGAGAGAGAGAGA+TGG - chr3_2:53647826-53647845 None:intergenic 50.0%
AACAGACTGAAAAGGTGGGC+TGG - chr3_2:53649084-53649103 None:intergenic 50.0%
!! TGGTGAAGGTGCTTTCTCTG+GGG + chr3_2:53649124-53649143 Msa0411390:CDS 50.0%
GCCAAAAGCTTATTCTGCCG+AGG + chr3_2:53649166-53649185 Msa0411390:CDS 50.0%
ACAAGGAGGGTAAGGGTTAG+AGG - chr3_2:53649915-53649934 None:intergenic 50.0%
GTGAATGGACAAGGAGGGTA+AGG - chr3_2:53649923-53649942 None:intergenic 50.0%
TGGCAGTGAATGGACAAGGA+GGG - chr3_2:53649928-53649947 None:intergenic 50.0%
ATGGCAGTGAATGGACAAGG+AGG - chr3_2:53649929-53649948 None:intergenic 50.0%
GACATGGCAGTGAATGGACA+AGG - chr3_2:53649932-53649951 None:intergenic 50.0%
GGTGACTCTGATGGAGCAAA+CGG + chr3_2:53651185-53651204 Msa0411390:CDS 50.0%
AGATCTGAGGAAAACCCGTC+AGG + chr3_2:53651283-53651302 Msa0411390:CDS 50.0%
AGCTGACACTCTTGCATTCG+AGG - chr3_2:53651321-53651340 None:intergenic 50.0%
TGCGGCTCTGCATACAGAAA+TGG + chr3_2:53651631-53651650 Msa0411390:CDS 50.0%
! CTTGGTAGAGACTCTGAAGG+TGG + chr3_2:53651763-53651782 Msa0411390:CDS 50.0%
GACATGCAGATTCCCAACTG+TGG - chr3_2:53651849-53651868 None:intergenic 50.0%
CATCCGAAACTGAGGAAGCA+CGG + chr3_2:53651969-53651988 Msa0411390:CDS 50.0%
AGCACAGGTAGAAGCTGTGA+AGG + chr3_2:53652300-53652319 Msa0411390:CDS 50.0%
TGTGAAGGCTAGCGAAAACG+AGG + chr3_2:53652315-53652334 Msa0411390:CDS 50.0%
!! AGCCATCGCAGCCTTTTTCA+AGG - chr3_2:53652404-53652423 None:intergenic 50.0%
GATGGCTGAAGCAGCAAAGA+AGG + chr3_2:53652417-53652436 Msa0411390:CDS 50.0%
AGCAGCAAAGAAGGCAGTTG+AGG + chr3_2:53652426-53652445 Msa0411390:CDS 50.0%
GCAGCAAAGAAGGCAGTTGA+GGG + chr3_2:53652427-53652446 Msa0411390:CDS 50.0%
TCCACCTCCTCGTACAACAT+TGG + chr3_2:53652576-53652595 Msa0411390:CDS 50.0%
TCCAATGTTGTACGAGGAGG+TGG - chr3_2:53652580-53652599 None:intergenic 50.0%
CACGAGACCTATGTGTGAAC+GGG + chr3_2:53652993-53653012 Msa0411390:three_prime_UTR 50.0%
GAGAGCCAGTAGCAGTTTGC+CGG - chr3_2:53649022-53649041 None:intergenic 55.0%
! GTGTCGATCTCTCCAACCTC+TGG - chr3_2:53649062-53649081 None:intergenic 55.0%
!! AGTGCGGTTTTTCGGCCTTC+GGG - chr3_2:53649845-53649864 None:intergenic 55.0%
!! GAGTGCGGTTTTTCGGCCTT+CGG - chr3_2:53649846-53649865 None:intergenic 55.0%
TGGAGCTTGAAAGGGCCCAA+AGG + chr3_2:53651060-53651079 Msa0411390:CDS 55.0%
GTCTGAGCTCGAAGCCTGTT+CGG + chr3_2:53651886-53651905 Msa0411390:CDS 55.0%
! AGTGGATGCTGCGAAAGCAC+AGG + chr3_2:53652285-53652304 Msa0411390:CDS 55.0%
GGCCTTGAAAAAGGCTGCGA+TGG + chr3_2:53652399-53652418 Msa0411390:CDS 55.0%
CAGTTGAGGGTGAGCTTCGA+AGG + chr3_2:53652440-53652459 Msa0411390:CDS 55.0%
TTGAGGGTGAGCTTCGAAGG+TGG + chr3_2:53652443-53652462 Msa0411390:CDS 55.0%
CTGATGGAGCAAACGGTGCC+TGG + chr3_2:53651192-53651211 Msa0411390:CDS 60.0%
CCGCCGTGCTTCCTCAGTTT+CGG - chr3_2:53651975-53651994 None:intergenic 60.0%
! CCGAAACTGAGGAAGCACGG+CGG + chr3_2:53651972-53651991 Msa0411390:CDS 60.0%
! CGAAACTGAGGAAGCACGGC+GGG + chr3_2:53651973-53651992 Msa0411390:CDS 60.0%
AGGGTGAGCTTCGAAGGTGG+CGG + chr3_2:53652446-53652465 Msa0411390:CDS 60.0%
AAGCGGCAGAAGCTGCAGCT+CGG + chr3_2:53652485-53652504 Msa0411390:CDS 60.0%
GGGTGAGCTTCGAAGGTGGC+GGG + chr3_2:53652447-53652466 Msa0411390:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 53647710 53653052 53647710 ID=Msa0411390;Name=Msa0411390
chr3_2 mRNA 53647710 53653052 53647710 ID=Msa0411390-mRNA-1;Parent=Msa0411390;Name=Msa0411390-mRNA-1;_AED=0.02;_eAED=0.02;_QI=261|1|1|1|0.5|0.33|3|320|652
chr3_2 exon 53647710 53647931 53647710 ID=Msa0411390-mRNA-1:exon:10733;Parent=Msa0411390-mRNA-1
chr3_2 exon 53648966 53649187 53648966 ID=Msa0411390-mRNA-1:exon:10734;Parent=Msa0411390-mRNA-1
chr3_2 exon 53650957 53653052 53650957 ID=Msa0411390-mRNA-1:exon:10735;Parent=Msa0411390-mRNA-1
chr3_2 five_prime_UTR 53647710 53647931 53647710 ID=Msa0411390-mRNA-1:five_prime_utr;Parent=Msa0411390-mRNA-1
chr3_2 five_prime_UTR 53648966 53649004 53648966 ID=Msa0411390-mRNA-1:five_prime_utr;Parent=Msa0411390-mRNA-1
chr3_2 CDS 53649005 53649187 53649005 ID=Msa0411390-mRNA-1:cds;Parent=Msa0411390-mRNA-1
chr3_2 CDS 53650957 53652732 53650957 ID=Msa0411390-mRNA-1:cds;Parent=Msa0411390-mRNA-1
chr3_2 three_prime_UTR 53652733 53653052 53652733 ID=Msa0411390-mRNA-1:three_prime_utr;Parent=Msa0411390-mRNA-1
Gene Sequence

>Msa0411390

ATGGTTGCAAAAATCCGGCAAACTGCTACTGGCTCTCCCTCTCCTAGTCTAAAACCAGAGGTTGGAGAGATCGACACCAGCCCACCTTTTCAGTCTGTTAAAGCTGCTGTGTCTCTATTTGGTGAAGGTGCTTTCTCTGGGGAAAGACCTATCCATAAGAAGCCAAAAGCTTATTCTGCCGAGAGAGTTTTGGCCAAGGAGACGCAACTTCATGTAGCCGAAAAAGAGCTGAACAAGTTAAAGGAACAAGTAAAGAACGCTGAAACTACTAAGGCTCAAGCTCTTGTGGAGCTTGAAAGGGCCCAAAGGACAGTCGATGATTTGACACAGAAGCTAAAACTTATTACTGAATCTAGGGAGTTAGCAACGAAAGCAACAGAAGCTGCAAAAAGTCAGGCAAAACAAAAGTACGGTGACTCTGATGGAGCAAACGGTGCCTGGAAAGAAGAGTTAGAAAATGCAGTTCAAAGGTATGCATCTATCATGACAGAACTTGATGCTGCTAAGCAAGATCTGAGGAAAACCCGTCAGGAATACGATTCATCCTCGAATGCAAGAGTGTCAGCTGTCAAGAGAACAGAAGAAGCTGAAAATGCAATGAAGGAAAACACAGAAAGAGTATCTGAGCTGTCAAAAGAAATTTCAGCTGTAAAGGAGTCAATTGAGCAAACAAAGCTAGCATATGTGGAATCACAGCAACAGCAAGCATTGGTATTATCTGAAAAAGATGCTCTTAGACAATCATACAAAGCTACCCTTGAACAATCCAAAAAGAAATTACTTGCTTTGAAAAAGGAATTTAATCCCGAAATCACAAAAAGTCTTGAAGCACAGTTGGCCGAGACAATGAATGAAATTGCGGCTCTGCATACAGAAATGGAGAACAAAAGATCGTCTGACTTGGACTCTCTGAAAACTGTTACTTCGGAGCTTGATGGTGCGAAAGAATCGCTGCAGAAAGTAGTAGATGAAGAAAACACTCTTAGAAGCTTGGTAGAGACTCTGAAGGTGGAACTAGAGAATGTAAAGAAAGAACATTCTGAGTTGAAGGAAAAAGAGTCCGAATTGGAATCCACAGTTGGGAATCTGCATGTCAAACTTCGCAAAAGTAAGTCTGAGCTCGAAGCCTGTTCGGCTGAAGAATCTAAGGTTAGAGGTGCATCTGAGGAAATGATCTTGACGCTGAGTCAGTTAACATCCGAAACTGAGGAAGCACGGCGGGAAGCAGAAGATATGAAGAACAAGACAGAAGAGCTAAAGAAAGAAGCTGAAGCTACCAAGCTTGCATTGGAAGAAGCAGAGAAAAAACTGAAAGAAGCAACGGAAGAAGCAGAAGCAGCAAAAGCAGCTGAAGCTAGTGCAATCGAGCAGATTACAGTGCTAACTGAAAGGACTAGTGCAAGACGTGCATCTACATCGTCAGAATCCGGTGCTGCAATGACAATATCGACGGAGGAGTTCGAGTCTCTAAAACGGAAAGTCGAGGAATCCGATAAATTAGCTGACATGAAAGTGGATGCTGCGAAAGCACAGGTAGAAGCTGTGAAGGCTAGCGAAAACGAGGTTTTGAAAAAGTTGGAGGCAACTCAGAAGGAGATTGAAGATATGAAAACTGCAACACAGGAGGCCTTGAAAAAGGCTGCGATGGCTGAAGCAGCAAAGAAGGCAGTTGAGGGTGAGCTTCGAAGGTGGCGGGAGCGAGAACAGAAAAAAGCGGCAGAAGCTGCAGCTCGGATACTAGCCGAAACACAGATGTCATCGGAATCATCACCTCAACATTATAGGATTCAAAAGCAGAATGTTCCACCTCCTCGTACAACATTGGAAGTGAAAAAGTTAGATAAAGAGAAGATTTCAGTTTCGAAGAAAATTAACATTAGTGGTATCTTTCAGAGGAAGAAAAGCAATATTGTTGAGGATGGATCTGCTTCTTATTTGCCTGGTGAGAATCCTGTATAG

Protein sequence

>Msa0411390

MVAKIRQTATGSPSPSLKPEVGEIDTSPPFQSVKAAVSLFGEGAFSGERPIHKKPKAYSAERVLAKETQLHVAEKELNKLKEQVKNAETTKAQALVELERAQRTVDDLTQKLKLITESRELATKATEAAKSQAKQKYGDSDGANGAWKEELENAVQRYASIMTELDAAKQDLRKTRQEYDSSSNARVSAVKRTEEAENAMKENTERVSELSKEISAVKESIEQTKLAYVESQQQQALVLSEKDALRQSYKATLEQSKKKLLALKKEFNPEITKSLEAQLAETMNEIAALHTEMENKRSSDLDSLKTVTSELDGAKESLQKVVDEENTLRSLVETLKVELENVKKEHSELKEKESELESTVGNLHVKLRKSKSELEACSAEESKVRGASEEMILTLSQLTSETEEARREAEDMKNKTEELKKEAEATKLALEEAEKKLKEATEEAEAAKAAEASAIEQITVLTERTSARRASTSSESGAAMTISTEEFESLKRKVEESDKLADMKVDAAKAQVEAVKASENEVLKKLEATQKEIEDMKTATQEALKKAAMAEAAKKAVEGELRRWREREQKKAAEAAARILAETQMSSESSPQHYRIQKQNVPPPRTTLEVKKLDKEKISVSKKINISGIFQRKKSNIVEDGSASYLPGENPV*