AlfalfaGEDB | Msa0695430

M. sativa cultivar zhongmu-4 / Msa0695430

KEGG: -
GO: -
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695430	XP_013456998.1	93.005	386	10	5	1	375	1	380	0.0	624

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695430	sp\|Q9FZA4\|DOF14_ARATH	38.462	273	130	9	54	319	27	268	1.65e-34	132

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695430	A0A072UML9	93.005	386	10	5	1	375	1	380	0.0	624

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TFs/TRs:

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Gene ID	Type	Classification
Msa0695430	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001780	Msa0695430	0.833754	4.447862e-56	-8.615850e-47
Msa0011170	Msa0695430	0.803326	3.677744e-49	-8.615850e-47
Msa0031340	Msa0695430	0.812526	4.055673e-51	-8.615850e-47
Msa0039330	Msa0695430	0.820892	5.394360e-53	-8.615850e-47
Msa0170320	Msa0695430	0.805708	1.171632e-49	-8.615850e-47
Msa0188830	Msa0695430	0.803350	3.636029e-49	-8.615850e-47
Msa0197380	Msa0695430	0.800538	1.375352e-48	-8.615850e-47
Msa0201070	Msa0695430	0.815627	8.391456e-52	-8.615850e-47
Msa0220580	Msa0695430	0.839516	1.512561e-57	-8.615850e-47
Msa0220740	Msa0695430	0.804271	2.340730e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695430	MtrunA17_Chr4g0047001	93.005	386	10	5	1	375	1	380	0.0	624
Msa0695430	MtrunA17_Chr2g0282511	40.642	374	135	17	8	371	6	302	3.50e-45	157
Msa0695430	MtrunA17_Chr8g0367161	62.651	83	31	0	45	127	23	105	2.85e-34	129
Msa0695430	MtrunA17_Chr8g0374251	73.529	68	18	0	49	116	63	130	7.03e-33	125
Msa0695430	MtrunA17_Chr2g0328021	76.562	64	15	0	54	117	62	125	9.67e-33	124
Msa0695430	MtrunA17_Chr4g0010151	46.032	126	68	0	47	172	75	200	1.17e-32	125
Msa0695430	MtrunA17_Chr4g0031411	62.222	90	30	1	47	132	68	157	1.73e-32	124
Msa0695430	MtrunA17_Chr2g0326001	83.333	60	10	0	49	108	35	94	2.64e-32	123
Msa0695430	MtrunA17_Chr4g0030051	85.965	57	8	0	50	106	37	93	9.73e-32	121
Msa0695430	MtrunA17_Chr8g0346551	50.847	118	53	2	43	156	13	129	1.03e-31	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0695430	AT1G28310.2	36.170	329	163	11	1	319	1	292	4.88e-36	134
Msa0695430	AT1G28310.1	38.462	273	130	9	54	319	27	268	1.68e-35	132
Msa0695430	AT5G65590.1	67.901	81	26	0	35	115	22	102	5.84e-35	131
Msa0695430	AT5G60200.1	81.967	61	11	0	48	108	49	109	5.88e-34	127
Msa0695430	AT3G61850.2	44.828	145	61	4	49	174	57	201	2.62e-32	123
Msa0695430	AT3G61850.3	44.828	145	61	4	49	174	57	201	2.62e-32	123
Msa0695430	AT3G61850.1	45.455	143	59	4	51	174	71	213	2.77e-32	123
Msa0695430	AT2G37590.1	65.753	73	25	0	38	110	73	145	2.97e-32	124
Msa0695430	AT1G07640.1	46.825	126	63	1	35	160	2	123	8.71e-32	121
Msa0695430	AT1G07640.2	40.000	165	88	3	3	160	19	179	1.53e-31	122

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Find 122 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATATTGGACAAGAGG+TGG	0.582761	4_4:+64972181	Msa0695430:CDS
AAAGAAGTGAAACTAGGTGA+AGG	0.626336	4_4:+64972820	Msa0695430:CDS
AACAACAACACTGCAGCAAC+AGG	0.445401	4_4:+64972973	Msa0695430:CDS
AACAACTACAGTTCCATCTT+TGG	0.305663	4_4:+64972616	Msa0695430:CDS
AACACAGTTACCAAACATTT+TGG	0.243359	4_4:-64971735	None:intergenic
AACAGCAACAACAAGCTTTA+AGG	0.128070	4_4:+64972071	Msa0695430:CDS
AACTGGAGTAGTAGAGGCCA+TGG	0.527816	4_4:-64972668	None:intergenic
AACTTTCTTAACATTTGGAA+GGG	0.489571	4_4:+64973620	Msa0695430:three_prime_UTR
AAGAGAATTGATATGGTTTG+AGG	0.411504	4_4:-64972386	None:intergenic
AAGTGGTGGAAATAGGGTTA+TGG	0.446908	4_4:+64972024	Msa0695430:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAAAACAACAAAATTTGAG+TGG	-	chr4_4:64971851-64971870	None:intergenic	30.0%
GTAAAGCCTGTAAAAGATAT+TGG	+	chr4_4:64972170-64972189	Msa0695430:CDS	30.0%
TGTAAAAGATATTGGACAAG+AGG	+	chr4_4:64972178-64972197	Msa0695430:CDS	30.0%
ATGTTTGAAGAAGAGTGATT+TGG	-	chr4_4:64972265-64972284	None:intergenic	30.0%
AAGAGAATTGATATGGTTTG+AGG	-	chr4_4:64972389-64972408	None:intergenic	30.0%
CATCATGATGATTACAGAAA+TGG	+	chr4_4:64972577-64972596	Msa0695430:CDS	30.0%
AATAGAAGAAGAACCAAAGA+TGG	-	chr4_4:64972632-64972651	None:intergenic	30.0%
TTCAACTAATGATAACTCCA+TGG	+	chr4_4:64972651-64972670	Msa0695430:CDS	30.0%
GATTCAAAAGAAGTGAAACT+AGG	+	chr4_4:64972814-64972833	Msa0695430:CDS	30.0%
CAGATTCTTCTTCTCTTTAT+TGG	+	chr4_4:64972932-64972951	Msa0695430:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	64971672	64973763	64971672	ID=Msa0695430;Name=Msa0695430
chr4_4	mRNA	64971672	64973763	64971672	ID=Msa0695430-mRNA-1;Parent=Msa0695430;Name=Msa0695430-mRNA-1;_AED=0.00;_eAED=0.00;_QI=68\|1\|1\|1\|0\|0.5\|2\|701\|377
chr4_4	exon	64971672	64971796	64971672	ID=Msa0695430-mRNA-1:exon:18646;Parent=Msa0695430-mRNA-1
chr4_4	exon	64971986	64973763	64971986	ID=Msa0695430-mRNA-1:exon:18647;Parent=Msa0695430-mRNA-1
chr4_4	five_prime_UTR	64971672	64971739	64971672	ID=Msa0695430-mRNA-1:five_prime_utr;Parent=Msa0695430-mRNA-1
chr4_4	CDS	64971740	64971796	64971740	ID=Msa0695430-mRNA-1:cds;Parent=Msa0695430-mRNA-1
chr4_4	CDS	64971986	64973062	64971986	ID=Msa0695430-mRNA-1:cds;Parent=Msa0695430-mRNA-1
chr4_4	three_prime_UTR	64973063	64973763	64973063	ID=Msa0695430-mRNA-1:three_prime_utr;Parent=Msa0695430-mRNA-1

Gene Sequence

>Msa0695430

ATGTTTGGTAACTGTGTTGATGAGAAAACGGTAATCACTTGTAACAAATTGACACAGGCTGAGATAGATGATCGTAAGGTTTCAATGGCTTCTTCAAGTGGTGGAAATAGGGTTATGGAAAAACCAGGTCAAGAGCTTCTTCAACAGCAACAACAAGCTTTAAGGTGTCCACGTTGTGATTCATCAAACACTAAATTCTGTTACTACAATAACTACAGTTTATCACAACCAAGACACTTCTGTAAAGCCTGTAAAAGATATTGGACAAGAGGTGGAACACTTAGAAACGTTCCTGTTGGTGGTGGTTGCAGAAAAAACAAACGTCTTAAACGACCAAATCACTCTTCTTCAAACATTGATACTGCTACTGCTTCTCCTTCTTCTTCAACTCCTACTAGTGCTAATTCAAACCCTTCTTCTCAACAACAACAACACCATAGTTTTGATATTGCTTCTACCTCAAACCATATCAATTCTCTTCTTTATGGTAACTCTTCTTGTCATGATGTGATGAACTTTCCTTTTGCAACAAGGTTCAATTCTACTAGAGTTTCAAGTTCTTCTTCTGGTTATGATCATCTTCAGCAGCAGCAGCCTCAGGTGAATGGTCTTGGATTAGGTTTTTCATCTGGGGTAGTTAATCTTAATCATCATGATGATTACAGAAATGGATTTGGTTCAAATAATAACAACTACAGTTCCATCTTTGGTTCTTCTTCTATTTCAACTAATGATAACTCCATGGCCTCTACTACTCCAGTTATGGCTTCTCTACTTAACTCTACACTACTACAACAGAAATTCATGAGTACAGCTGCTGCTGCTGCTGCTGGTGGTGGTGGAATGAAAGGTGGTGATCCTTTTCATCATGAGGCTGGGATAATGGATTCAAAAGAAGTGAAACTAGGTGAAGGACTACAAAATAGGTTGGATCAGTGGAGTAATAATATGAATGCTAATGGTGGTGTTGCTTTTCAAAACCAGATGGAGAACATGGGTTTGTCAGATTCTTCTTCTCTTTATTGGAATAACAACAACACCAACAACAACAACACTGCAGCAACAGGTTTGAGTAGTGTTTGGAGTATTGATCACCAACCTAATAATATTGGTCATAATTCAGTTATTCTCTGA

Protein sequence

>Msa0695430

MFGNCVDEKTVITCNKLTQAEIDDRKVSMASSSGGNRVMEKPGQELLQQQQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPNHSSSNIDTATASPSSSTPTSANSNPSSQQQQHHSFDIASTSNHINSLLYGNSSCHDVMNFPFATRFNSTRVSSSSSGYDHLQQQQPQVNGLGLGFSSGVVNLNHHDDYRNGFGSNNNNYSSIFGSSSISTNDNSMASTTPVMASLLNSTLLQQKFMSTAAAAAAGGGGMKGGDPFHHEAGIMDSKEVKLGEGLQNRLDQWSNNMNANGGVAFQNQMENMGLSDSSSLYWNNNNTNNNNTAATGLSSVWSIDHQPNNIGHNSVIL*