AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0695430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0695430 MtrunA17_Chr4g0047001 93.005 386 10 5 1 375 1 380 0.0 624
Msa0695430 MtrunA17_Chr2g0282511 40.642 374 135 17 8 371 6 302 3.50e-45 157
Msa0695430 MtrunA17_Chr8g0367161 62.651 83 31 0 45 127 23 105 2.85e-34 129
Msa0695430 MtrunA17_Chr8g0374251 73.529 68 18 0 49 116 63 130 7.03e-33 125
Msa0695430 MtrunA17_Chr2g0328021 76.562 64 15 0 54 117 62 125 9.67e-33 124
Msa0695430 MtrunA17_Chr4g0010151 46.032 126 68 0 47 172 75 200 1.17e-32 125
Msa0695430 MtrunA17_Chr4g0031411 62.222 90 30 1 47 132 68 157 1.73e-32 124
Msa0695430 MtrunA17_Chr2g0326001 83.333 60 10 0 49 108 35 94 2.64e-32 123
Msa0695430 MtrunA17_Chr4g0030051 85.965 57 8 0 50 106 37 93 9.73e-32 121
Msa0695430 MtrunA17_Chr8g0346551 50.847 118 53 2 43 156 13 129 1.03e-31 120
Msa0695430 MtrunA17_Chr3g0127201 71.233 73 16 1 41 108 9 81 1.29e-31 121
Msa0695430 MtrunA17_Chr8g0374111 61.176 85 31 1 41 125 18 100 2.13e-31 119
Msa0695430 MtrunA17_Chr3g0126201 55.882 102 38 2 15 110 7 107 5.20e-31 120
Msa0695430 MtrunA17_Chr2g0282051 55.000 100 38 2 17 110 3 101 8.89e-31 118
Msa0695430 MtrunA17_Chr2g0282441 77.049 61 14 0 45 105 16 76 3.53e-30 118
Msa0695430 MtrunA17_Chr5g0411951 79.630 54 11 0 51 104 40 93 2.37e-29 116
Msa0695430 MtrunA17_Chr7g0223311 71.875 64 18 0 53 116 76 139 2.75e-29 116
Msa0695430 MtrunA17_Chr4g0047761 72.973 74 19 1 38 111 56 128 3.23e-29 115
Msa0695430 MtrunA17_Chr1g0177251 79.310 58 12 0 51 108 9 66 3.45e-29 114
Msa0695430 MtrunA17_Chr1g0188851 67.606 71 21 1 40 108 27 97 4.32e-29 114
Msa0695430 MtrunA17_Chr8g0341671 78.571 56 12 0 50 105 16 71 8.24e-29 111
Msa0695430 MtrunA17_Chr3g0117601 72.131 61 17 0 44 104 51 111 2.08e-28 113
Msa0695430 MtrunA17_Chr4g0061761 81.132 53 10 0 52 104 38 90 2.26e-28 113
Msa0695430 MtrunA17_Chr2g0308011 84.000 50 8 0 53 102 36 85 8.91e-27 105
Msa0695430 MtrunA17_Chr3g0092111 65.625 64 22 0 44 107 126 189 2.27e-26 109
Msa0695430 MtrunA17_Chr4g0042481 62.121 66 25 0 44 109 112 177 7.39e-26 108
Msa0695430 MtrunA17_Chr7g0254161 63.077 65 24 0 45 109 92 156 1.19e-25 107
Msa0695430 MtrunA17_Chr7g0217581 65.079 63 22 0 45 107 223 285 4.19e-25 107
Msa0695430 MtrunA17_Chr6g0453321 67.213 61 20 0 47 107 129 189 7.17e-25 105
Msa0695430 MtrunA17_Chr2g0283811 50.000 94 38 2 44 137 37 121 1.76e-24 98.2
Msa0695430 MtrunA17_Chr6g0460721 56.923 65 28 0 45 109 80 144 2.64e-24 102
Msa0695430 MtrunA17_Chr8g0355261 56.923 65 28 0 44 108 108 172 3.50e-24 103
Msa0695430 MtrunA17_Chr6g0460731 42.056 107 62 0 3 109 45 151 4.53e-24 102
Msa0695430 MtrunA17_Chr5g0417571 63.333 60 22 0 48 107 132 191 4.27e-23 98.6
Msa0695430 MtrunA17_Chr5g0417601 64.407 59 21 0 49 107 135 193 2.91e-21 94.4
Msa0695430 MtrunA17_Chr5g0417551 67.857 56 18 0 52 107 125 180 4.92e-21 93.6
Msa0695430 MtrunA17_Chr5g0417561 70.370 54 16 0 54 107 119 172 6.10e-21 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0695430 AT1G28310.2 36.170 329 163 11 1 319 1 292 4.88e-36 134
Msa0695430 AT1G28310.1 38.462 273 130 9 54 319 27 268 1.68e-35 132
Msa0695430 AT5G65590.1 67.901 81 26 0 35 115 22 102 5.84e-35 131
Msa0695430 AT5G60200.1 81.967 61 11 0 48 108 49 109 5.88e-34 127
Msa0695430 AT3G61850.2 44.828 145 61 4 49 174 57 201 2.62e-32 123
Msa0695430 AT3G61850.3 44.828 145 61 4 49 174 57 201 2.62e-32 123
Msa0695430 AT3G61850.1 45.455 143 59 4 51 174 71 213 2.77e-32 123
Msa0695430 AT2G37590.1 65.753 73 25 0 38 110 73 145 2.97e-32 124
Msa0695430 AT1G07640.1 46.825 126 63 1 35 160 2 123 8.71e-32 121
Msa0695430 AT1G07640.2 40.000 165 88 3 3 160 19 179 1.53e-31 122
Msa0695430 AT1G07640.3 40.000 165 88 3 3 160 27 187 1.85e-31 122
Msa0695430 AT3G55370.1 61.176 85 33 0 26 110 48 132 1.99e-31 121
Msa0695430 AT5G02460.1 82.759 58 10 0 51 108 92 149 2.35e-31 123
Msa0695430 AT3G55370.2 61.176 85 33 0 26 110 48 132 2.88e-31 122
Msa0695430 AT3G55370.3 61.176 85 33 0 26 110 93 177 3.22e-31 122
Msa0695430 AT2G28810.2 79.310 58 12 0 48 105 71 128 4.50e-31 120
Msa0695430 AT5G60850.1 70.667 75 19 1 52 123 49 123 5.03e-31 120
Msa0695430 AT1G21340.1 64.557 79 25 1 39 114 20 98 5.40e-31 119
Msa0695430 AT3G50410.1 63.218 87 28 3 29 111 1 87 6.45e-31 118
Msa0695430 AT2G28810.1 79.310 58 12 0 48 105 88 145 6.52e-31 120
Msa0695430 AT3G45610.1 56.667 90 33 1 51 140 37 120 1.12e-30 117
Msa0695430 AT3G61850.5 52.778 108 41 2 49 146 57 164 1.29e-30 119
Msa0695430 AT2G28510.1 82.456 57 10 0 52 108 46 102 1.44e-30 118
Msa0695430 AT3G61850.4 52.778 108 41 2 49 146 69 176 1.87e-30 119
Msa0695430 AT1G51700.1 76.923 65 12 2 45 108 26 88 2.58e-30 115
Msa0695430 AT3G52440.1 81.818 55 10 0 56 110 27 81 2.64e-29 114
Msa0695430 AT3G52440.2 81.818 55 10 0 56 110 46 100 3.66e-29 114
Msa0695430 AT3G21270.1 84.906 53 8 0 54 106 29 81 5.64e-29 112
Msa0695430 AT4G00940.1 74.603 63 16 0 51 113 65 127 6.46e-29 114
Msa0695430 AT4G00940.3 74.603 63 16 0 51 113 65 127 6.46e-29 114
Msa0695430 AT4G00940.2 74.603 63 16 0 51 113 65 127 6.46e-29 114
Msa0695430 AT4G24060.1 75.000 60 15 0 49 108 48 107 7.75e-29 115
Msa0695430 AT5G66940.1 56.977 86 33 2 50 132 28 112 2.40e-28 110
Msa0695430 AT4G21050.1 60.000 80 32 0 47 126 17 96 2.56e-28 110
Msa0695430 AT4G38000.1 79.310 58 11 1 51 107 38 95 8.28e-28 110
Msa0695430 AT5G62940.1 69.355 62 19 0 43 104 62 123 3.75e-27 111
Msa0695430 AT3G47500.1 66.667 66 22 0 42 107 98 163 2.78e-26 109
Msa0695430 AT5G62430.1 44.860 107 49 2 1 107 11 107 8.62e-26 105
Msa0695430 AT1G64620.1 74.545 55 14 0 49 103 44 98 2.83e-25 105
Msa0695430 AT2G46590.1 78.431 51 11 0 51 101 65 115 3.63e-25 105
Msa0695430 AT2G46590.2 78.431 51 11 0 51 101 77 127 3.99e-25 105
Msa0695430 AT5G39660.3 68.852 61 19 0 47 107 131 191 4.53e-25 106
Msa0695430 AT5G39660.1 68.852 61 19 0 47 107 131 191 4.53e-25 106
Msa0695430 AT5G39660.2 68.852 61 19 0 47 107 131 191 4.53e-25 106
Msa0695430 AT1G69570.1 60.294 68 27 0 47 114 125 192 2.49e-24 103
Msa0695430 AT1G26790.1 63.934 61 22 0 47 107 104 164 2.72e-24 103
Msa0695430 AT1G47655.1 72.549 51 14 0 52 102 27 77 7.20e-24 98.6
Msa0695430 AT1G29160.1 56.338 71 29 1 39 107 45 115 2.12e-23 96.3
Msa0695430 AT2G34140.1 53.086 81 31 1 27 107 38 111 2.27e-23 95.9
Msa0695430 AT4G21040.1 57.143 77 30 2 56 131 27 101 3.17e-23 97.4
Msa0695430 AT4G21080.1 65.517 58 19 1 56 112 27 84 3.25e-21 92.0
Msa0695430 AT4G21030.1 46.053 76 41 0 56 131 23 98 3.93e-14 70.9

Find 122 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATCAATTCTCTTCTTTA+TGG 0.060643 4_4:+64972394 Msa0695430:CDS
CAGATTCTTCTTCTCTTTAT+TGG 0.115189 4_4:+64972932 Msa0695430:CDS
AACAGCAACAACAAGCTTTA+AGG 0.128070 4_4:+64972071 Msa0695430:CDS
ATGTTTCAAGGTTGAGAATT+TGG 0.186147 4_4:+64973312 Msa0695430:three_prime_UTR
CTTCTTCAAGTGGTGGAAAT+AGG 0.186986 4_4:+64972017 Msa0695430:CDS
TGTGGGATTGGTTTGGTATT+TGG 0.216703 4_4:+64973734 Msa0695430:three_prime_UTR
GAATTATGACCAATATTATT+AGG 0.234994 4_4:-64973027 None:intergenic
AACACAGTTACCAAACATTT+TGG 0.243359 4_4:-64971735 None:intergenic
TAATATTATTTACTTTGATT+TGG 0.263250 4_4:+64973697 Msa0695430:three_prime_UTR
GGTTAGGTTATGAGGGTTAT+TGG 0.267988 4_4:+64973642 Msa0695430:three_prime_UTR
GTTAGGTTATGAGGGTTATT+GGG 0.270661 4_4:+64973643 Msa0695430:three_prime_UTR
CAGGTGAATGGTCTTGGATT+AGG 0.278693 4_4:+64972526 Msa0695430:CDS
CATAAAGAAGAGAATTGATA+TGG 0.297144 4_4:-64972393 None:intergenic
AACAACTACAGTTCCATCTT+TGG 0.305663 4_4:+64972616 Msa0695430:CDS
TCATCATGAGGCTGGGATAA+TGG 0.306350 4_4:+64972792 Msa0695430:CDS
TGCTGCAGTGTTGTTGTTGT+TGG 0.309230 4_4:-64972968 None:intergenic
ATGTATTATTGTGATTAGTT+AGG 0.310937 4_4:+64973530 Msa0695430:three_prime_UTR
GTAAAGCCTGTAAAAGATAT+TGG 0.311115 4_4:+64972170 Msa0695430:CDS
TTGGAAGGGGTTAGGTTATG+AGG 0.323142 4_4:+64973634 Msa0695430:three_prime_UTR
TTAGGTTATGAGGGTTATTG+GGG 0.324940 4_4:+64973644 Msa0695430:three_prime_UTR
CATTTGGGGTCAATTGGGTT+TGG 0.331429 4_4:+64973179 Msa0695430:three_prime_UTR
TGTTTCAAGGTTGAGAATTT+GGG 0.332884 4_4:+64973313 Msa0695430:three_prime_UTR
GCTGCTGCTGCTGGTGGTGG+TGG 0.341313 4_4:+64972748 Msa0695430:CDS
GATGATTACAGAAATGGATT+TGG 0.345610 4_4:+64972583 Msa0695430:CDS
ATTAGTTAGGGTGGTGAGGT+TGG 0.349456 4_4:+64973543 Msa0695430:three_prime_UTR
CTTACTCAATCAATCAACTA+TGG 0.352717 4_4:-64973437 None:intergenic
CATCATGATGATTACAGAAA+TGG 0.360895 4_4:+64972577 Msa0695430:CDS
CAACAGGTTTGAGTAGTGTT+TGG 0.362182 4_4:+64972989 Msa0695430:CDS
ACTTAAAGGTGAGAGAGTTT+AGG 0.366369 4_4:+64973235 Msa0695430:three_prime_UTR
CTTAACATTTGGAAGGGGTT+AGG 0.368481 4_4:+64973626 Msa0695430:three_prime_UTR
AGAGTTTCAAGTTCTTCTTC+TGG 0.369826 4_4:+64972475 Msa0695430:CDS
TTCTTCAAGTGGTGGAAATA+GGG 0.372187 4_4:+64972018 Msa0695430:CDS
GGATATGGAGGTTCTTCATT+TGG 0.372923 4_4:+64973403 Msa0695430:three_prime_UTR
TTGTTAACTTTCTTAACATT+TGG 0.385994 4_4:+64973615 Msa0695430:three_prime_UTR
TTAAGTAGAGAAGCCATAAC+TGG 0.397152 4_4:-64972685 None:intergenic
TGTATTATTGTGATTAGTTA+GGG 0.397649 4_4:+64973531 Msa0695430:three_prime_UTR
GGAGCTCAGATCAAGGGATA+TGG 0.400830 4_4:+64973388 Msa0695430:three_prime_UTR
CAGCCTCAGGTGAATGGTCT+TGG 0.403606 4_4:+64972520 Msa0695430:CDS
AAGAGAATTGATATGGTTTG+AGG 0.411504 4_4:-64972386 None:intergenic
GATCACCAACCTAATAATAT+TGG 0.414706 4_4:+64973018 Msa0695430:CDS
CTCATAGAGACCAAAATGTT+TGG 0.415114 4_4:+64971725 Msa0695430:exon
TAGAAGCAATATCAAAACTA+TGG 0.419426 4_4:-64972363 None:intergenic
ATGTTTGAAGAAGAGTGATT+TGG 0.420876 4_4:-64972262 None:intergenic
GATTAATATGTATGTGGGAT+TGG 0.432302 4_4:+64973722 Msa0695430:three_prime_UTR
TTAGTTAGGGTGGTGAGGTT+GGG 0.439956 4_4:+64973544 Msa0695430:three_prime_UTR
GGCGCCAACTGCTCTTTGTC+TGG 0.441603 4_4:+64971683 Msa0695430:five_prime_UTR
AACAACAACACTGCAGCAAC+AGG 0.445401 4_4:+64972973 Msa0695430:CDS
AAGTGGTGGAAATAGGGTTA+TGG 0.446908 4_4:+64972024 Msa0695430:CDS
ACAAACCCATGTTCTCCATC+TGG 0.452753 4_4:-64972909 None:intergenic
ACTATCTAGCTATCTCTTTG+AGG 0.455828 4_4:+64973094 Msa0695430:three_prime_UTR
TAGGTGAAGGACTACAAAAT+AGG 0.461358 4_4:+64972833 Msa0695430:CDS
TGGGTTTGGTTTACTTACAT+TGG 0.461944 4_4:+64973193 Msa0695430:three_prime_UTR
GGCCTCTACTACTCCAGTTA+TGG 0.463925 4_4:+64972672 Msa0695430:CDS
GGGTTTGAATTAGCACTAGT+AGG 0.464115 4_4:-64972319 None:intergenic
GAATTGAACCTTGTTGCAAA+AGG 0.464424 4_4:-64972448 None:intergenic
TATGACCAATATTATTAGGT+TGG 0.469646 4_4:-64973023 None:intergenic
TTTCTGCAACCACCACCAAC+AGG 0.472277 4_4:-64972220 None:intergenic
GCTGGTGGTGGTGGAATGAA+AGG 0.473306 4_4:+64972757 Msa0695430:CDS
AGATGATCGTAAGGTTTCAA+TGG 0.474994 4_4:+64971994 Msa0695430:CDS
ATCCCAGCCTCATGATGAAA+AGG 0.481394 4_4:-64972787 None:intergenic
TATAATTGTGGTATAGAAGA+GGG 0.486584 4_4:+64973668 Msa0695430:three_prime_UTR
AACTTTCTTAACATTTGGAA+GGG 0.489571 4_4:+64973620 Msa0695430:three_prime_UTR
TGTCTGTGGAGCTCAGATCA+AGG 0.492001 4_4:+64973381 Msa0695430:three_prime_UTR
CAGGCTTTACAGAAGTGTCT+TGG 0.500398 4_4:-64972157 None:intergenic
TGTTGTTGTTGTTGAGAAGA+AGG 0.501373 4_4:-64972340 None:intergenic
TGGAAGGGGTTAGGTTATGA+GGG 0.501709 4_4:+64973635 Msa0695430:three_prime_UTR
TTGGTTTGGTATTTGGTGTG+TGG 0.501927 4_4:+64973741 Msa0695430:three_prime_UTR
GTTGTTGTTGTTGAGAAGAA+GGG 0.502011 4_4:-64972339 None:intergenic
AATAGAAGAAGAACCAAAGA+TGG 0.508474 4_4:-64972629 None:intergenic
CCTTGAAACATAAAACTGAC+AGG 0.508654 4_4:-64973300 None:intergenic
ATATGTATGTGGGATTGGTT+TGG 0.509849 4_4:+64973727 Msa0695430:three_prime_UTR
TTGGATGATTAATATGTATG+TGG 0.510167 4_4:+64973716 Msa0695430:three_prime_UTR
TCAAAACCAGATGGAGAACA+TGG 0.510931 4_4:+64972903 Msa0695430:CDS
CAGCAGCAGCCTCAGGTGAA+TGG 0.518167 4_4:+64972514 Msa0695430:CDS
CTTAGAAACGTTCCTGTTGG+TGG 0.520182 4_4:+64972208 Msa0695430:CDS
AGTAATAATATGAATGCTAA+TGG 0.525718 4_4:+64972868 Msa0695430:CDS
TAGGTTATGAGGGTTATTGG+GGG 0.526370 4_4:+64973645 Msa0695430:three_prime_UTR
AACTGGAGTAGTAGAGGCCA+TGG 0.527816 4_4:-64972668 None:intergenic
AGTTGATTGATTGAGTAAGT+TGG 0.528561 4_4:+64973441 Msa0695430:three_prime_UTR
GTATAATTGTGGTATAGAAG+AGG 0.529015 4_4:+64973667 Msa0695430:three_prime_UTR
TGTGATTAGTTAGGGTGGTG+AGG 0.530440 4_4:+64973539 Msa0695430:three_prime_UTR
TAACTTTCTTAACATTTGGA+AGG 0.532329 4_4:+64973619 Msa0695430:three_prime_UTR
TGAAGGACTACAAAATAGGT+TGG 0.535498 4_4:+64972837 Msa0695430:CDS
CTAGTAGGAGTTGAAGAAGA+AGG 0.548358 4_4:-64972304 None:intergenic
TGGATGATTAATATGTATGT+GGG 0.548565 4_4:+64973717 Msa0695430:three_prime_UTR
TCTTCAGCAGCAGCAGCCTC+AGG 0.551095 4_4:+64972507 Msa0695430:CDS
GGCTGAGATAGATGATCGTA+AGG 0.560156 4_4:+64971985 Msa0695430:intron
GATACCAGACAAAGAGCAGT+TGG 0.560767 4_4:-64971687 None:intergenic
TGTAAAAGATATTGGACAAG+AGG 0.561250 4_4:+64972178 Msa0695430:CDS
GTTTCAATGGCTTCTTCAAG+TGG 0.563411 4_4:+64972007 Msa0695430:CDS
AGCCATAACTGGAGTAGTAG+AGG 0.573379 4_4:-64972674 None:intergenic
AGAAACGTTCCTGTTGGTGG+TGG 0.578028 4_4:+64972211 Msa0695430:CDS
TGTTGAAGAAGCTCTTGACC+TGG 0.579160 4_4:-64972052 None:intergenic
ACTTTCTTAACATTTGGAAG+GGG 0.581154 4_4:+64973621 Msa0695430:three_prime_UTR
TACAAAATAGGTTGGATCAG+TGG 0.582074 4_4:+64972845 Msa0695430:CDS
AAAAGATATTGGACAAGAGG+TGG 0.582761 4_4:+64972181 Msa0695430:CDS
TCAATGGCTTCTTCAAGTGG+TGG 0.584214 4_4:+64972010 Msa0695430:CDS
GGTGGTGGTGGAATGAAAGG+TGG 0.591912 4_4:+64972760 Msa0695430:CDS
GTCTGTGGAGCTCAGATCAA+GGG 0.592725 4_4:+64973382 Msa0695430:three_prime_UTR
TAACTGTGTTGATGAGAAAA+CGG 0.594803 4_4:+64971748 Msa0695430:CDS
TAATTGTGGTATAGAAGAGG+GGG 0.595120 4_4:+64973670 Msa0695430:three_prime_UTR
GATTCAAAAGAAGTGAAACT+AGG 0.595250 4_4:+64972814 Msa0695430:CDS
TTCAACTAATGATAACTCCA+TGG 0.599304 4_4:+64972651 Msa0695430:CDS
CATGTGTGTAACTGTGTCTG+TGG 0.600953 4_4:+64973367 Msa0695430:three_prime_UTR
CAAAACCAGATGGAGAACAT+GGG 0.602211 4_4:+64972904 Msa0695430:CDS
GGTTGAGAATTTGGGCTGAG+AGG 0.603409 4_4:+64973321 Msa0695430:three_prime_UTR
GATGAAAGGAACTAATGTGT+TGG 0.604060 4_4:+64973584 Msa0695430:three_prime_UTR
ATAATTGTGGTATAGAAGAG+GGG 0.604104 4_4:+64973669 Msa0695430:three_prime_UTR
ATTATTGTGATTAGTTAGGG+TGG 0.604892 4_4:+64973534 Msa0695430:three_prime_UTR
TTTACTCACGATATGATGAA+AGG 0.608417 4_4:+64973570 Msa0695430:three_prime_UTR
ACACTTAGAAACGTTCCTGT+TGG 0.611337 4_4:+64972205 Msa0695430:CDS
TACACACATGATGAGAGAAG+AGG 0.615179 4_4:-64973354 None:intergenic
CACTTGTAACAAATTGACAC+AGG 0.623733 4_4:+64971775 Msa0695430:CDS
AAAGAAGTGAAACTAGGTGA+AGG 0.626336 4_4:+64972820 Msa0695430:CDS
AGGCCATCAAGCGAAACTCA+AGG 0.626605 4_4:+64971662 None:intergenic
ATTTGGGCTGAGAGGAACCT+CGG 0.631553 4_4:+64973329 Msa0695430:three_prime_UTR
AATAATATGAATGCTAATGG+TGG 0.635173 4_4:+64972871 Msa0695430:CDS
CTTGAAACATAAAACTGACA+GGG 0.645108 4_4:-64973299 None:intergenic
GCTCAGATCAAGGGATATGG+AGG 0.647696 4_4:+64973391 Msa0695430:three_prime_UTR
TGATGAGAGAAGAGGATCCG+AGG 0.663407 4_4:-64973346 None:intergenic
AATCCAAGACCATTCACCTG+AGG 0.720277 4_4:-64972523 None:intergenic
GTGTTTGATGAATCACAACG+TGG 0.749662 4_4:-64972097 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATTAGATATTTTTTTAA+TGG - chr4_4:64971947-64971966 None:intergenic 10.0%
!!! TTTTGTTTTTTATTTTCATT+TGG + chr4_4:64973163-64973182 Msa0695430:three_prime_UTR 10.0%
!!! TTTGTTTTTTATTTTCATTT+GGG + chr4_4:64973164-64973183 Msa0695430:three_prime_UTR 10.0%
!! TAATATTATTTACTTTGATT+TGG + chr4_4:64973697-64973716 Msa0695430:three_prime_UTR 10.0%
!!! CAAATTAGATATTTTTTTAA+TGG - chr4_4:64971947-64971966 None:intergenic 10.0%
!!! TTTTGTTTTTTATTTTCATT+TGG + chr4_4:64973163-64973182 Msa0695430:three_prime_UTR 10.0%
!!! TTTGTTTTTTATTTTCATTT+GGG + chr4_4:64973164-64973183 Msa0695430:three_prime_UTR 10.0%
!! TAATATTATTTACTTTGATT+TGG + chr4_4:64973697-64973716 Msa0695430:three_prime_UTR 10.0%
!!! TTGTTTTTTATTTTCATTTG+GGG + chr4_4:64973165-64973184 Msa0695430:three_prime_UTR 15.0%
!! ATAATACATTAGAAAAAGTA+AGG - chr4_4:64973519-64973538 None:intergenic 15.0%
!!! TTGTTTTTTATTTTCATTTG+GGG + chr4_4:64973165-64973184 Msa0695430:three_prime_UTR 15.0%
!! ATAATACATTAGAAAAAGTA+AGG - chr4_4:64973519-64973538 None:intergenic 15.0%
!! AGTAATAATATGAATGCTAA+TGG + chr4_4:64972868-64972887 Msa0695430:CDS 20.0%
!! GAATTATGACCAATATTATT+AGG - chr4_4:64973030-64973049 None:intergenic 20.0%
!! TACATTGGAACAAAAAAAAA+AGG + chr4_4:64973208-64973227 Msa0695430:three_prime_UTR 20.0%
!! AAAAAAAAGGAGATACTTAA+AGG + chr4_4:64973221-64973240 Msa0695430:three_prime_UTR 20.0%
!! AGAAAAAGTAAGGAAAATAA+AGG - chr4_4:64973509-64973528 None:intergenic 20.0%
!!! ATGTATTATTGTGATTAGTT+AGG + chr4_4:64973530-64973549 Msa0695430:three_prime_UTR 20.0%
!!! TGTATTATTGTGATTAGTTA+GGG + chr4_4:64973531-64973550 Msa0695430:three_prime_UTR 20.0%
!! TTGTTAACTTTCTTAACATT+TGG + chr4_4:64973615-64973634 Msa0695430:three_prime_UTR 20.0%
!! AGTAATAATATGAATGCTAA+TGG + chr4_4:64972868-64972887 Msa0695430:CDS 20.0%
!! GAATTATGACCAATATTATT+AGG - chr4_4:64973030-64973049 None:intergenic 20.0%
!! TACATTGGAACAAAAAAAAA+AGG + chr4_4:64973208-64973227 Msa0695430:three_prime_UTR 20.0%
!! AAAAAAAAGGAGATACTTAA+AGG + chr4_4:64973221-64973240 Msa0695430:three_prime_UTR 20.0%
!! AGAAAAAGTAAGGAAAATAA+AGG - chr4_4:64973509-64973528 None:intergenic 20.0%
!!! ATGTATTATTGTGATTAGTT+AGG + chr4_4:64973530-64973549 Msa0695430:three_prime_UTR 20.0%
!!! TGTATTATTGTGATTAGTTA+GGG + chr4_4:64973531-64973550 Msa0695430:three_prime_UTR 20.0%
!! TTGTTAACTTTCTTAACATT+TGG + chr4_4:64973615-64973634 Msa0695430:three_prime_UTR 20.0%
!!! AAATTTTGTTGTTTTCCTCT+TGG + chr4_4:64971854-64971873 Msa0695430:intron 25.0%
!!! AAGAAAGAGAAAGTGTTTTA+AGG - chr4_4:64971914-64971933 None:intergenic 25.0%
!!! TTGTTTTTCTTATCCTTTGT+AGG + chr4_4:64971964-64971983 Msa0695430:intron 25.0%
! TAGAAGCAATATCAAAACTA+TGG - chr4_4:64972366-64972385 None:intergenic 25.0%
! CATAAAGAAGAGAATTGATA+TGG - chr4_4:64972396-64972415 None:intergenic 25.0%
! CATATCAATTCTCTTCTTTA+TGG + chr4_4:64972394-64972413 Msa0695430:CDS 25.0%
! AATAATATGAATGCTAATGG+TGG + chr4_4:64972871-64972890 Msa0695430:CDS 25.0%
! TATGACCAATATTATTAGGT+TGG - chr4_4:64973026-64973045 None:intergenic 25.0%
!!! TCTTTTTCTTTAGCTCTATT+AGG + chr4_4:64973117-64973136 Msa0695430:three_prime_UTR 25.0%
! TAACTTTCTTAACATTTGGA+AGG + chr4_4:64973619-64973638 Msa0695430:three_prime_UTR 25.0%
! AACTTTCTTAACATTTGGAA+GGG + chr4_4:64973620-64973639 Msa0695430:three_prime_UTR 25.0%
! TATAATTGTGGTATAGAAGA+GGG + chr4_4:64973668-64973687 Msa0695430:three_prime_UTR 25.0%
! TTGGATGATTAATATGTATG+TGG + chr4_4:64973716-64973735 Msa0695430:three_prime_UTR 25.0%
! TGGATGATTAATATGTATGT+GGG + chr4_4:64973717-64973736 Msa0695430:three_prime_UTR 25.0%
!!! AAATTTTGTTGTTTTCCTCT+TGG + chr4_4:64971854-64971873 Msa0695430:intron 25.0%
!!! AAGAAAGAGAAAGTGTTTTA+AGG - chr4_4:64971914-64971933 None:intergenic 25.0%
!!! TTGTTTTTCTTATCCTTTGT+AGG + chr4_4:64971964-64971983 Msa0695430:intron 25.0%
! TAGAAGCAATATCAAAACTA+TGG - chr4_4:64972366-64972385 None:intergenic 25.0%
! CATAAAGAAGAGAATTGATA+TGG - chr4_4:64972396-64972415 None:intergenic 25.0%
! CATATCAATTCTCTTCTTTA+TGG + chr4_4:64972394-64972413 Msa0695430:CDS 25.0%
! AATAATATGAATGCTAATGG+TGG + chr4_4:64972871-64972890 Msa0695430:CDS 25.0%
! TATGACCAATATTATTAGGT+TGG - chr4_4:64973026-64973045 None:intergenic 25.0%
!!! TCTTTTTCTTTAGCTCTATT+AGG + chr4_4:64973117-64973136 Msa0695430:three_prime_UTR 25.0%
! TAACTTTCTTAACATTTGGA+AGG + chr4_4:64973619-64973638 Msa0695430:three_prime_UTR 25.0%
! AACTTTCTTAACATTTGGAA+GGG + chr4_4:64973620-64973639 Msa0695430:three_prime_UTR 25.0%
! TATAATTGTGGTATAGAAGA+GGG + chr4_4:64973668-64973687 Msa0695430:three_prime_UTR 25.0%
! TTGGATGATTAATATGTATG+TGG + chr4_4:64973716-64973735 Msa0695430:three_prime_UTR 25.0%
! TGGATGATTAATATGTATGT+GGG + chr4_4:64973717-64973736 Msa0695430:three_prime_UTR 25.0%
! AACACAGTTACCAAACATTT+TGG - chr4_4:64971738-64971757 None:intergenic 30.0%
! TAACTGTGTTGATGAGAAAA+CGG + chr4_4:64971748-64971767 Msa0695430:CDS 30.0%
GGAAAACAACAAAATTTGAG+TGG - chr4_4:64971851-64971870 None:intergenic 30.0%
!!! AAAGAGAAAGTGTTTTAAGG+TGG - chr4_4:64971911-64971930 None:intergenic 30.0%
GTAAAGCCTGTAAAAGATAT+TGG + chr4_4:64972170-64972189 Msa0695430:CDS 30.0%
! TCTTGTCCAATATCTTTTAC+AGG - chr4_4:64972179-64972198 None:intergenic 30.0%
TGTAAAAGATATTGGACAAG+AGG + chr4_4:64972178-64972197 Msa0695430:CDS 30.0%
ATGTTTGAAGAAGAGTGATT+TGG - chr4_4:64972265-64972284 None:intergenic 30.0%
AAGAGAATTGATATGGTTTG+AGG - chr4_4:64972389-64972408 None:intergenic 30.0%
!! TTGGATTAGGTTTTTCATCT+GGG + chr4_4:64972539-64972558 Msa0695430:CDS 30.0%
CATCATGATGATTACAGAAA+TGG + chr4_4:64972577-64972596 Msa0695430:CDS 30.0%
! GATGATTACAGAAATGGATT+TGG + chr4_4:64972583-64972602 Msa0695430:CDS 30.0%
AATAGAAGAAGAACCAAAGA+TGG - chr4_4:64972632-64972651 None:intergenic 30.0%
TTCAACTAATGATAACTCCA+TGG + chr4_4:64972651-64972670 Msa0695430:CDS 30.0%
GATTCAAAAGAAGTGAAACT+AGG + chr4_4:64972814-64972833 Msa0695430:CDS 30.0%
CAGATTCTTCTTCTCTTTAT+TGG + chr4_4:64972932-64972951 Msa0695430:CDS 30.0%
GATCACCAACCTAATAATAT+TGG + chr4_4:64973018-64973037 Msa0695430:CDS 30.0%
!! TATTTTCATTTGGGGTCAAT+TGG + chr4_4:64973173-64973192 Msa0695430:three_prime_UTR 30.0%
!! ATTTTCATTTGGGGTCAATT+GGG + chr4_4:64973174-64973193 Msa0695430:three_prime_UTR 30.0%
CTTGAAACATAAAACTGACA+GGG - chr4_4:64973302-64973321 None:intergenic 30.0%
ATGTTTCAAGGTTGAGAATT+TGG + chr4_4:64973312-64973331 Msa0695430:three_prime_UTR 30.0%
TGTTTCAAGGTTGAGAATTT+GGG + chr4_4:64973313-64973332 Msa0695430:three_prime_UTR 30.0%
CTTACTCAATCAATCAACTA+TGG - chr4_4:64973440-64973459 None:intergenic 30.0%
AGTTGATTGATTGAGTAAGT+TGG + chr4_4:64973441-64973460 Msa0695430:three_prime_UTR 30.0%
! ATTATTGTGATTAGTTAGGG+TGG + chr4_4:64973534-64973553 Msa0695430:three_prime_UTR 30.0%
TTTACTCACGATATGATGAA+AGG + chr4_4:64973570-64973589 Msa0695430:three_prime_UTR 30.0%
ACTTTCTTAACATTTGGAAG+GGG + chr4_4:64973621-64973640 Msa0695430:three_prime_UTR 30.0%
GTATAATTGTGGTATAGAAG+AGG + chr4_4:64973667-64973686 Msa0695430:three_prime_UTR 30.0%
ATAATTGTGGTATAGAAGAG+GGG + chr4_4:64973669-64973688 Msa0695430:three_prime_UTR 30.0%
GATTAATATGTATGTGGGAT+TGG + chr4_4:64973722-64973741 Msa0695430:three_prime_UTR 30.0%
! AACACAGTTACCAAACATTT+TGG - chr4_4:64971738-64971757 None:intergenic 30.0%
! TAACTGTGTTGATGAGAAAA+CGG + chr4_4:64971748-64971767 Msa0695430:CDS 30.0%
GGAAAACAACAAAATTTGAG+TGG - chr4_4:64971851-64971870 None:intergenic 30.0%
!!! AAAGAGAAAGTGTTTTAAGG+TGG - chr4_4:64971911-64971930 None:intergenic 30.0%
GTAAAGCCTGTAAAAGATAT+TGG + chr4_4:64972170-64972189 Msa0695430:CDS 30.0%
! TCTTGTCCAATATCTTTTAC+AGG - chr4_4:64972179-64972198 None:intergenic 30.0%
TGTAAAAGATATTGGACAAG+AGG + chr4_4:64972178-64972197 Msa0695430:CDS 30.0%
ATGTTTGAAGAAGAGTGATT+TGG - chr4_4:64972265-64972284 None:intergenic 30.0%
AAGAGAATTGATATGGTTTG+AGG - chr4_4:64972389-64972408 None:intergenic 30.0%
!! TTGGATTAGGTTTTTCATCT+GGG + chr4_4:64972539-64972558 Msa0695430:CDS 30.0%
CATCATGATGATTACAGAAA+TGG + chr4_4:64972577-64972596 Msa0695430:CDS 30.0%
! GATGATTACAGAAATGGATT+TGG + chr4_4:64972583-64972602 Msa0695430:CDS 30.0%
AATAGAAGAAGAACCAAAGA+TGG - chr4_4:64972632-64972651 None:intergenic 30.0%
TTCAACTAATGATAACTCCA+TGG + chr4_4:64972651-64972670 Msa0695430:CDS 30.0%
GATTCAAAAGAAGTGAAACT+AGG + chr4_4:64972814-64972833 Msa0695430:CDS 30.0%
CAGATTCTTCTTCTCTTTAT+TGG + chr4_4:64972932-64972951 Msa0695430:CDS 30.0%
GATCACCAACCTAATAATAT+TGG + chr4_4:64973018-64973037 Msa0695430:CDS 30.0%
!! TATTTTCATTTGGGGTCAAT+TGG + chr4_4:64973173-64973192 Msa0695430:three_prime_UTR 30.0%
!! ATTTTCATTTGGGGTCAATT+GGG + chr4_4:64973174-64973193 Msa0695430:three_prime_UTR 30.0%
CTTGAAACATAAAACTGACA+GGG - chr4_4:64973302-64973321 None:intergenic 30.0%
ATGTTTCAAGGTTGAGAATT+TGG + chr4_4:64973312-64973331 Msa0695430:three_prime_UTR 30.0%
TGTTTCAAGGTTGAGAATTT+GGG + chr4_4:64973313-64973332 Msa0695430:three_prime_UTR 30.0%
CTTACTCAATCAATCAACTA+TGG - chr4_4:64973440-64973459 None:intergenic 30.0%
AGTTGATTGATTGAGTAAGT+TGG + chr4_4:64973441-64973460 Msa0695430:three_prime_UTR 30.0%
! ATTATTGTGATTAGTTAGGG+TGG + chr4_4:64973534-64973553 Msa0695430:three_prime_UTR 30.0%
TTTACTCACGATATGATGAA+AGG + chr4_4:64973570-64973589 Msa0695430:three_prime_UTR 30.0%
ACTTTCTTAACATTTGGAAG+GGG + chr4_4:64973621-64973640 Msa0695430:three_prime_UTR 30.0%
GTATAATTGTGGTATAGAAG+AGG + chr4_4:64973667-64973686 Msa0695430:three_prime_UTR 30.0%
ATAATTGTGGTATAGAAGAG+GGG + chr4_4:64973669-64973688 Msa0695430:three_prime_UTR 30.0%
GATTAATATGTATGTGGGAT+TGG + chr4_4:64973722-64973741 Msa0695430:three_prime_UTR 30.0%
CTCATAGAGACCAAAATGTT+TGG + chr4_4:64971725-64971744 Msa0695430:exon 35.0%
CACTTGTAACAAATTGACAC+AGG + chr4_4:64971775-64971794 Msa0695430:CDS 35.0%
AGATGATCGTAAGGTTTCAA+TGG + chr4_4:64971994-64972013 Msa0695430:CDS 35.0%
! TTCTTCAAGTGGTGGAAATA+GGG + chr4_4:64972018-64972037 Msa0695430:CDS 35.0%
AATAGGGTTATGGAAAAACC+AGG + chr4_4:64972034-64972053 Msa0695430:CDS 35.0%
AACAGCAACAACAAGCTTTA+AGG + chr4_4:64972071-64972090 Msa0695430:CDS 35.0%
AAAAGATATTGGACAAGAGG+TGG + chr4_4:64972181-64972200 Msa0695430:CDS 35.0%
! GTTGTTGTTGTTGAGAAGAA+GGG - chr4_4:64972342-64972361 None:intergenic 35.0%
! TGTTGTTGTTGTTGAGAAGA+AGG - chr4_4:64972343-64972362 None:intergenic 35.0%
! TGAACTTTCCTTTTGCAACA+AGG + chr4_4:64972440-64972459 Msa0695430:CDS 35.0%
GAATTGAACCTTGTTGCAAA+AGG - chr4_4:64972451-64972470 None:intergenic 35.0%
!! AGAGTTTCAAGTTCTTCTTC+TGG + chr4_4:64972475-64972494 Msa0695430:CDS 35.0%
!! CTTGGATTAGGTTTTTCATC+TGG + chr4_4:64972538-64972557 Msa0695430:CDS 35.0%
!! TGGATTAGGTTTTTCATCTG+GGG + chr4_4:64972540-64972559 Msa0695430:CDS 35.0%
AACAACTACAGTTCCATCTT+TGG + chr4_4:64972616-64972635 Msa0695430:CDS 35.0%
TTAAGTAGAGAAGCCATAAC+TGG - chr4_4:64972688-64972707 None:intergenic 35.0%
AAAGAAGTGAAACTAGGTGA+AGG + chr4_4:64972820-64972839 Msa0695430:CDS 35.0%
TAGGTGAAGGACTACAAAAT+AGG + chr4_4:64972833-64972852 Msa0695430:CDS 35.0%
TGAAGGACTACAAAATAGGT+TGG + chr4_4:64972837-64972856 Msa0695430:CDS 35.0%
! TACAAAATAGGTTGGATCAG+TGG + chr4_4:64972845-64972864 Msa0695430:CDS 35.0%
!!! TGTTGCTTTTCAAAACCAGA+TGG + chr4_4:64972894-64972913 Msa0695430:CDS 35.0%
ACTATCTAGCTATCTCTTTG+AGG + chr4_4:64973094-64973113 Msa0695430:three_prime_UTR 35.0%
! TGGGTTTGGTTTACTTACAT+TGG + chr4_4:64973193-64973212 Msa0695430:three_prime_UTR 35.0%
ACTTAAAGGTGAGAGAGTTT+AGG + chr4_4:64973235-64973254 Msa0695430:three_prime_UTR 35.0%
CCTTGAAACATAAAACTGAC+AGG - chr4_4:64973303-64973322 None:intergenic 35.0%
!! CCTGTCAGTTTTATGTTTCA+AGG + chr4_4:64973300-64973319 Msa0695430:three_prime_UTR 35.0%
GATGAAAGGAACTAATGTGT+TGG + chr4_4:64973584-64973603 Msa0695430:three_prime_UTR 35.0%
GTTAGGTTATGAGGGTTATT+GGG + chr4_4:64973643-64973662 Msa0695430:three_prime_UTR 35.0%
TTAGGTTATGAGGGTTATTG+GGG + chr4_4:64973644-64973663 Msa0695430:three_prime_UTR 35.0%
TAATTGTGGTATAGAAGAGG+GGG + chr4_4:64973670-64973689 Msa0695430:three_prime_UTR 35.0%
!! ATATGTATGTGGGATTGGTT+TGG + chr4_4:64973727-64973746 Msa0695430:three_prime_UTR 35.0%
CTCATAGAGACCAAAATGTT+TGG + chr4_4:64971725-64971744 Msa0695430:exon 35.0%
CACTTGTAACAAATTGACAC+AGG + chr4_4:64971775-64971794 Msa0695430:CDS 35.0%
AGATGATCGTAAGGTTTCAA+TGG + chr4_4:64971994-64972013 Msa0695430:CDS 35.0%
! TTCTTCAAGTGGTGGAAATA+GGG + chr4_4:64972018-64972037 Msa0695430:CDS 35.0%
AATAGGGTTATGGAAAAACC+AGG + chr4_4:64972034-64972053 Msa0695430:CDS 35.0%
AACAGCAACAACAAGCTTTA+AGG + chr4_4:64972071-64972090 Msa0695430:CDS 35.0%
AAAAGATATTGGACAAGAGG+TGG + chr4_4:64972181-64972200 Msa0695430:CDS 35.0%
! GTTGTTGTTGTTGAGAAGAA+GGG - chr4_4:64972342-64972361 None:intergenic 35.0%
! TGTTGTTGTTGTTGAGAAGA+AGG - chr4_4:64972343-64972362 None:intergenic 35.0%
! TGAACTTTCCTTTTGCAACA+AGG + chr4_4:64972440-64972459 Msa0695430:CDS 35.0%
GAATTGAACCTTGTTGCAAA+AGG - chr4_4:64972451-64972470 None:intergenic 35.0%
!! AGAGTTTCAAGTTCTTCTTC+TGG + chr4_4:64972475-64972494 Msa0695430:CDS 35.0%
!! CTTGGATTAGGTTTTTCATC+TGG + chr4_4:64972538-64972557 Msa0695430:CDS 35.0%
!! TGGATTAGGTTTTTCATCTG+GGG + chr4_4:64972540-64972559 Msa0695430:CDS 35.0%
AACAACTACAGTTCCATCTT+TGG + chr4_4:64972616-64972635 Msa0695430:CDS 35.0%
TTAAGTAGAGAAGCCATAAC+TGG - chr4_4:64972688-64972707 None:intergenic 35.0%
AAAGAAGTGAAACTAGGTGA+AGG + chr4_4:64972820-64972839 Msa0695430:CDS 35.0%
TAGGTGAAGGACTACAAAAT+AGG + chr4_4:64972833-64972852 Msa0695430:CDS 35.0%
TGAAGGACTACAAAATAGGT+TGG + chr4_4:64972837-64972856 Msa0695430:CDS 35.0%
! TACAAAATAGGTTGGATCAG+TGG + chr4_4:64972845-64972864 Msa0695430:CDS 35.0%
!!! TGTTGCTTTTCAAAACCAGA+TGG + chr4_4:64972894-64972913 Msa0695430:CDS 35.0%
ACTATCTAGCTATCTCTTTG+AGG + chr4_4:64973094-64973113 Msa0695430:three_prime_UTR 35.0%
! TGGGTTTGGTTTACTTACAT+TGG + chr4_4:64973193-64973212 Msa0695430:three_prime_UTR 35.0%
ACTTAAAGGTGAGAGAGTTT+AGG + chr4_4:64973235-64973254 Msa0695430:three_prime_UTR 35.0%
CCTTGAAACATAAAACTGAC+AGG - chr4_4:64973303-64973322 None:intergenic 35.0%
!! CCTGTCAGTTTTATGTTTCA+AGG + chr4_4:64973300-64973319 Msa0695430:three_prime_UTR 35.0%
GATGAAAGGAACTAATGTGT+TGG + chr4_4:64973584-64973603 Msa0695430:three_prime_UTR 35.0%
GTTAGGTTATGAGGGTTATT+GGG + chr4_4:64973643-64973662 Msa0695430:three_prime_UTR 35.0%
TTAGGTTATGAGGGTTATTG+GGG + chr4_4:64973644-64973663 Msa0695430:three_prime_UTR 35.0%
TAATTGTGGTATAGAAGAGG+GGG + chr4_4:64973670-64973689 Msa0695430:three_prime_UTR 35.0%
!! ATATGTATGTGGGATTGGTT+TGG + chr4_4:64973727-64973746 Msa0695430:three_prime_UTR 35.0%
GATAGAGAAAGAGAGTGAGA+TGG - chr4_4:64971803-64971822 None:intergenic 40.0%
TGGCTATATTCTGTTCCAAG+AGG - chr4_4:64971872-64971891 None:intergenic 40.0%
TCATCTATCTCAGCCTACAA+AGG - chr4_4:64971980-64971999 None:intergenic 40.0%
GTTTCAATGGCTTCTTCAAG+TGG + chr4_4:64972007-64972026 Msa0695430:CDS 40.0%
! CTTCTTCAAGTGGTGGAAAT+AGG + chr4_4:64972017-64972036 Msa0695430:CDS 40.0%
! AAGTGGTGGAAATAGGGTTA+TGG + chr4_4:64972024-64972043 Msa0695430:CDS 40.0%
GTGTTTGATGAATCACAACG+TGG - chr4_4:64972100-64972119 None:intergenic 40.0%
ACACTTAGAAACGTTCCTGT+TGG + chr4_4:64972205-64972224 Msa0695430:CDS 40.0%
CTAGTAGGAGTTGAAGAAGA+AGG - chr4_4:64972307-64972326 None:intergenic 40.0%
GGGTTTGAATTAGCACTAGT+AGG - chr4_4:64972322-64972341 None:intergenic 40.0%
! TGGTGATCCTTTTCATCATG+AGG + chr4_4:64972780-64972799 Msa0695430:CDS 40.0%
! ATCCTTTTCATCATGAGGCT+GGG + chr4_4:64972785-64972804 Msa0695430:CDS 40.0%
TCAAAACCAGATGGAGAACA+TGG + chr4_4:64972903-64972922 Msa0695430:CDS 40.0%
CAAAACCAGATGGAGAACAT+GGG + chr4_4:64972904-64972923 Msa0695430:CDS 40.0%
CAACAGGTTTGAGTAGTGTT+TGG + chr4_4:64972989-64973008 Msa0695430:CDS 40.0%
TACACACATGATGAGAGAAG+AGG - chr4_4:64973357-64973376 None:intergenic 40.0%
GGATATGGAGGTTCTTCATT+TGG + chr4_4:64973403-64973422 Msa0695430:three_prime_UTR 40.0%
CTTAACATTTGGAAGGGGTT+AGG + chr4_4:64973626-64973645 Msa0695430:three_prime_UTR 40.0%
GGTTAGGTTATGAGGGTTAT+TGG + chr4_4:64973642-64973661 Msa0695430:three_prime_UTR 40.0%
TAGGTTATGAGGGTTATTGG+GGG + chr4_4:64973645-64973664 Msa0695430:three_prime_UTR 40.0%
! GGTTATTGGGGGTATAATTG+TGG + chr4_4:64973656-64973675 Msa0695430:three_prime_UTR 40.0%
!! TGTGGGATTGGTTTGGTATT+TGG + chr4_4:64973734-64973753 Msa0695430:three_prime_UTR 40.0%
!! TTGGTTTGGTATTTGGTGTG+TGG + chr4_4:64973741-64973760 Msa0695430:three_prime_UTR 40.0%
!! TGGTTTGGTATTTGGTGTGT+GGG + chr4_4:64973742-64973761 Msa0695430:three_prime_UTR 40.0%
GATAGAGAAAGAGAGTGAGA+TGG - chr4_4:64971803-64971822 None:intergenic 40.0%
TGGCTATATTCTGTTCCAAG+AGG - chr4_4:64971872-64971891 None:intergenic 40.0%
TCATCTATCTCAGCCTACAA+AGG - chr4_4:64971980-64971999 None:intergenic 40.0%
GTTTCAATGGCTTCTTCAAG+TGG + chr4_4:64972007-64972026 Msa0695430:CDS 40.0%
! CTTCTTCAAGTGGTGGAAAT+AGG + chr4_4:64972017-64972036 Msa0695430:CDS 40.0%
! AAGTGGTGGAAATAGGGTTA+TGG + chr4_4:64972024-64972043 Msa0695430:CDS 40.0%
GTGTTTGATGAATCACAACG+TGG - chr4_4:64972100-64972119 None:intergenic 40.0%
ACACTTAGAAACGTTCCTGT+TGG + chr4_4:64972205-64972224 Msa0695430:CDS 40.0%
CTAGTAGGAGTTGAAGAAGA+AGG - chr4_4:64972307-64972326 None:intergenic 40.0%
GGGTTTGAATTAGCACTAGT+AGG - chr4_4:64972322-64972341 None:intergenic 40.0%
! TGGTGATCCTTTTCATCATG+AGG + chr4_4:64972780-64972799 Msa0695430:CDS 40.0%
! ATCCTTTTCATCATGAGGCT+GGG + chr4_4:64972785-64972804 Msa0695430:CDS 40.0%
TCAAAACCAGATGGAGAACA+TGG + chr4_4:64972903-64972922 Msa0695430:CDS 40.0%
CAAAACCAGATGGAGAACAT+GGG + chr4_4:64972904-64972923 Msa0695430:CDS 40.0%
CAACAGGTTTGAGTAGTGTT+TGG + chr4_4:64972989-64973008 Msa0695430:CDS 40.0%
TACACACATGATGAGAGAAG+AGG - chr4_4:64973357-64973376 None:intergenic 40.0%
GGATATGGAGGTTCTTCATT+TGG + chr4_4:64973403-64973422 Msa0695430:three_prime_UTR 40.0%
CTTAACATTTGGAAGGGGTT+AGG + chr4_4:64973626-64973645 Msa0695430:three_prime_UTR 40.0%
GGTTAGGTTATGAGGGTTAT+TGG + chr4_4:64973642-64973661 Msa0695430:three_prime_UTR 40.0%
TAGGTTATGAGGGTTATTGG+GGG + chr4_4:64973645-64973664 Msa0695430:three_prime_UTR 40.0%
! GGTTATTGGGGGTATAATTG+TGG + chr4_4:64973656-64973675 Msa0695430:three_prime_UTR 40.0%
!! TGTGGGATTGGTTTGGTATT+TGG + chr4_4:64973734-64973753 Msa0695430:three_prime_UTR 40.0%
GATACCAGACAAAGAGCAGT+TGG - chr4_4:64971690-64971709 None:intergenic 45.0%
!!! GTGGTGCATGTTTTAGTCAG+TGG - chr4_4:64971892-64971911 None:intergenic 45.0%
GGCTGAGATAGATGATCGTA+AGG + chr4_4:64971985-64972004 Msa0695430:intron 45.0%
TCAATGGCTTCTTCAAGTGG+TGG + chr4_4:64972010-64972029 Msa0695430:CDS 45.0%
TGTTGAAGAAGCTCTTGACC+TGG - chr4_4:64972055-64972074 None:intergenic 45.0%
!! CAGGCTTTACAGAAGTGTCT+TGG - chr4_4:64972160-64972179 None:intergenic 45.0%
CTTAGAAACGTTCCTGTTGG+TGG + chr4_4:64972208-64972227 Msa0695430:CDS 45.0%
AATCCAAGACCATTCACCTG+AGG - chr4_4:64972526-64972545 None:intergenic 45.0%
! CAGGTGAATGGTCTTGGATT+AGG + chr4_4:64972526-64972545 Msa0695430:CDS 45.0%
AGCCATAACTGGAGTAGTAG+AGG - chr4_4:64972677-64972696 None:intergenic 45.0%
! GATCCTTTTCATCATGAGGC+TGG + chr4_4:64972784-64972803 Msa0695430:CDS 45.0%
ATCCCAGCCTCATGATGAAA+AGG - chr4_4:64972790-64972809 None:intergenic 45.0%
TCATCATGAGGCTGGGATAA+TGG + chr4_4:64972792-64972811 Msa0695430:CDS 45.0%
ACAAACCCATGTTCTCCATC+TGG - chr4_4:64972912-64972931 None:intergenic 45.0%
! TGCTGCAGTGTTGTTGTTGT+TGG - chr4_4:64972971-64972990 None:intergenic 45.0%
AACAACAACACTGCAGCAAC+AGG + chr4_4:64972973-64972992 Msa0695430:CDS 45.0%
! CATTTGGGGTCAATTGGGTT+TGG + chr4_4:64973179-64973198 Msa0695430:three_prime_UTR 45.0%
CATGTGTGTAACTGTGTCTG+TGG + chr4_4:64973367-64973386 Msa0695430:three_prime_UTR 45.0%
! TGTGATTAGTTAGGGTGGTG+AGG + chr4_4:64973539-64973558 Msa0695430:three_prime_UTR 45.0%
ATTAGTTAGGGTGGTGAGGT+TGG + chr4_4:64973543-64973562 Msa0695430:three_prime_UTR 45.0%
TTAGTTAGGGTGGTGAGGTT+GGG + chr4_4:64973544-64973563 Msa0695430:three_prime_UTR 45.0%
TTGGAAGGGGTTAGGTTATG+AGG + chr4_4:64973634-64973653 Msa0695430:three_prime_UTR 45.0%
TGGAAGGGGTTAGGTTATGA+GGG + chr4_4:64973635-64973654 Msa0695430:three_prime_UTR 45.0%
GATACCAGACAAAGAGCAGT+TGG - chr4_4:64971690-64971709 None:intergenic 45.0%
!!! GTGGTGCATGTTTTAGTCAG+TGG - chr4_4:64971892-64971911 None:intergenic 45.0%
GGCTGAGATAGATGATCGTA+AGG + chr4_4:64971985-64972004 Msa0695430:intron 45.0%
TCAATGGCTTCTTCAAGTGG+TGG + chr4_4:64972010-64972029 Msa0695430:CDS 45.0%
TGTTGAAGAAGCTCTTGACC+TGG - chr4_4:64972055-64972074 None:intergenic 45.0%
!! CAGGCTTTACAGAAGTGTCT+TGG - chr4_4:64972160-64972179 None:intergenic 45.0%
CTTAGAAACGTTCCTGTTGG+TGG + chr4_4:64972208-64972227 Msa0695430:CDS 45.0%
AATCCAAGACCATTCACCTG+AGG - chr4_4:64972526-64972545 None:intergenic 45.0%
! CAGGTGAATGGTCTTGGATT+AGG + chr4_4:64972526-64972545 Msa0695430:CDS 45.0%
AGCCATAACTGGAGTAGTAG+AGG - chr4_4:64972677-64972696 None:intergenic 45.0%
! GATCCTTTTCATCATGAGGC+TGG + chr4_4:64972784-64972803 Msa0695430:CDS 45.0%
ATCCCAGCCTCATGATGAAA+AGG - chr4_4:64972790-64972809 None:intergenic 45.0%
TCATCATGAGGCTGGGATAA+TGG + chr4_4:64972792-64972811 Msa0695430:CDS 45.0%
ACAAACCCATGTTCTCCATC+TGG - chr4_4:64972912-64972931 None:intergenic 45.0%
! TGCTGCAGTGTTGTTGTTGT+TGG - chr4_4:64972971-64972990 None:intergenic 45.0%
AACAACAACACTGCAGCAAC+AGG + chr4_4:64972973-64972992 Msa0695430:CDS 45.0%
! CATTTGGGGTCAATTGGGTT+TGG + chr4_4:64973179-64973198 Msa0695430:three_prime_UTR 45.0%
CATGTGTGTAACTGTGTCTG+TGG + chr4_4:64973367-64973386 Msa0695430:three_prime_UTR 45.0%
! TGTGATTAGTTAGGGTGGTG+AGG + chr4_4:64973539-64973558 Msa0695430:three_prime_UTR 45.0%
ATTAGTTAGGGTGGTGAGGT+TGG + chr4_4:64973543-64973562 Msa0695430:three_prime_UTR 45.0%
TTAGTTAGGGTGGTGAGGTT+GGG + chr4_4:64973544-64973563 Msa0695430:three_prime_UTR 45.0%
TTGGAAGGGGTTAGGTTATG+AGG + chr4_4:64973634-64973653 Msa0695430:three_prime_UTR 45.0%
TGGAAGGGGTTAGGTTATGA+GGG + chr4_4:64973635-64973654 Msa0695430:three_prime_UTR 45.0%
! AGAAACGTTCCTGTTGGTGG+TGG + chr4_4:64972211-64972230 Msa0695430:CDS 50.0%
TTTCTGCAACCACCACCAAC+AGG - chr4_4:64972223-64972242 None:intergenic 50.0%
AACTGGAGTAGTAGAGGCCA+TGG - chr4_4:64972671-64972690 None:intergenic 50.0%
GGCCTCTACTACTCCAGTTA+TGG + chr4_4:64972672-64972691 Msa0695430:CDS 50.0%
GGTTGAGAATTTGGGCTGAG+AGG + chr4_4:64973321-64973340 Msa0695430:three_prime_UTR 50.0%
ATTTGGGCTGAGAGGAACCT+CGG + chr4_4:64973329-64973348 Msa0695430:three_prime_UTR 50.0%
TGATGAGAGAAGAGGATCCG+AGG - chr4_4:64973349-64973368 None:intergenic 50.0%
TGTCTGTGGAGCTCAGATCA+AGG + chr4_4:64973381-64973400 Msa0695430:three_prime_UTR 50.0%
GTCTGTGGAGCTCAGATCAA+GGG + chr4_4:64973382-64973401 Msa0695430:three_prime_UTR 50.0%
GGAGCTCAGATCAAGGGATA+TGG + chr4_4:64973388-64973407 Msa0695430:three_prime_UTR 50.0%
GCTCAGATCAAGGGATATGG+AGG + chr4_4:64973391-64973410 Msa0695430:three_prime_UTR 50.0%
! AGAAACGTTCCTGTTGGTGG+TGG + chr4_4:64972211-64972230 Msa0695430:CDS 50.0%
TTTCTGCAACCACCACCAAC+AGG - chr4_4:64972223-64972242 None:intergenic 50.0%
AACTGGAGTAGTAGAGGCCA+TGG - chr4_4:64972671-64972690 None:intergenic 50.0%
GGCCTCTACTACTCCAGTTA+TGG + chr4_4:64972672-64972691 Msa0695430:CDS 50.0%
GGTTGAGAATTTGGGCTGAG+AGG + chr4_4:64973321-64973340 Msa0695430:three_prime_UTR 50.0%
ATTTGGGCTGAGAGGAACCT+CGG + chr4_4:64973329-64973348 Msa0695430:three_prime_UTR 50.0%
TGATGAGAGAAGAGGATCCG+AGG - chr4_4:64973349-64973368 None:intergenic 50.0%
TGTCTGTGGAGCTCAGATCA+AGG + chr4_4:64973381-64973400 Msa0695430:three_prime_UTR 50.0%
GTCTGTGGAGCTCAGATCAA+GGG + chr4_4:64973382-64973401 Msa0695430:three_prime_UTR 50.0%
GGAGCTCAGATCAAGGGATA+TGG + chr4_4:64973388-64973407 Msa0695430:three_prime_UTR 50.0%
GCTCAGATCAAGGGATATGG+AGG + chr4_4:64973391-64973410 Msa0695430:three_prime_UTR 50.0%
CAGCCTCAGGTGAATGGTCT+TGG + chr4_4:64972520-64972539 Msa0695430:CDS 55.0%
!! GCTGGTGGTGGTGGAATGAA+AGG + chr4_4:64972757-64972776 Msa0695430:CDS 55.0%
!! GGTGGTGGTGGAATGAAAGG+TGG + chr4_4:64972760-64972779 Msa0695430:CDS 55.0%
CAGCCTCAGGTGAATGGTCT+TGG + chr4_4:64972520-64972539 Msa0695430:CDS 55.0%
!! GCTGGTGGTGGTGGAATGAA+AGG + chr4_4:64972757-64972776 Msa0695430:CDS 55.0%
!! GGTGGTGGTGGAATGAAAGG+TGG + chr4_4:64972760-64972779 Msa0695430:CDS 55.0%
GGCGCCAACTGCTCTTTGTC+TGG + chr4_4:64971683-64971702 Msa0695430:five_prime_UTR 60.0%
TCTTCAGCAGCAGCAGCCTC+AGG + chr4_4:64972507-64972526 Msa0695430:CDS 60.0%
CAGCAGCAGCCTCAGGTGAA+TGG + chr4_4:64972514-64972533 Msa0695430:CDS 60.0%
GGCGCCAACTGCTCTTTGTC+TGG + chr4_4:64971683-64971702 Msa0695430:five_prime_UTR 60.0%
TCTTCAGCAGCAGCAGCCTC+AGG + chr4_4:64972507-64972526 Msa0695430:CDS 60.0%
CAGCAGCAGCCTCAGGTGAA+TGG + chr4_4:64972514-64972533 Msa0695430:CDS 60.0%
ACAGCTGCTGCTGCTGCTGC+TGG + chr4_4:64972739-64972758 Msa0695430:CDS 65.0%
ACAGCTGCTGCTGCTGCTGC+TGG + chr4_4:64972739-64972758 Msa0695430:CDS 65.0%
GCTGCTGCTGCTGCTGCTGG+TGG + chr4_4:64972742-64972761 Msa0695430:CDS 70.0%
GCTGCTGCTGCTGCTGGTGG+TGG + chr4_4:64972745-64972764 Msa0695430:CDS 70.0%
!! GCTGCTGCTGCTGGTGGTGG+TGG + chr4_4:64972748-64972767 Msa0695430:CDS 70.0%
GCTGCTGCTGCTGCTGCTGG+TGG + chr4_4:64972742-64972761 Msa0695430:CDS 70.0%
GCTGCTGCTGCTGCTGGTGG+TGG + chr4_4:64972745-64972764 Msa0695430:CDS 70.0%
!! GCTGCTGCTGCTGGTGGTGG+TGG + chr4_4:64972748-64972767 Msa0695430:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 64971672 64973763 64971672 ID=Msa0695430;Name=Msa0695430
chr4_4 mRNA 64971672 64973763 64971672 ID=Msa0695430-mRNA-1;Parent=Msa0695430;Name=Msa0695430-mRNA-1;_AED=0.00;_eAED=0.00;_QI=68|1|1|1|0|0.5|2|701|377
chr4_4 exon 64971672 64971796 64971672 ID=Msa0695430-mRNA-1:exon:18646;Parent=Msa0695430-mRNA-1
chr4_4 exon 64971986 64973763 64971986 ID=Msa0695430-mRNA-1:exon:18647;Parent=Msa0695430-mRNA-1
chr4_4 five_prime_UTR 64971672 64971739 64971672 ID=Msa0695430-mRNA-1:five_prime_utr;Parent=Msa0695430-mRNA-1
chr4_4 CDS 64971740 64971796 64971740 ID=Msa0695430-mRNA-1:cds;Parent=Msa0695430-mRNA-1
chr4_4 CDS 64971986 64973062 64971986 ID=Msa0695430-mRNA-1:cds;Parent=Msa0695430-mRNA-1
chr4_4 three_prime_UTR 64973063 64973763 64973063 ID=Msa0695430-mRNA-1:three_prime_utr;Parent=Msa0695430-mRNA-1
Gene Sequence

>Msa0695430

ATGTTTGGTAACTGTGTTGATGAGAAAACGGTAATCACTTGTAACAAATTGACACAGGCTGAGATAGATGATCGTAAGGTTTCAATGGCTTCTTCAAGTGGTGGAAATAGGGTTATGGAAAAACCAGGTCAAGAGCTTCTTCAACAGCAACAACAAGCTTTAAGGTGTCCACGTTGTGATTCATCAAACACTAAATTCTGTTACTACAATAACTACAGTTTATCACAACCAAGACACTTCTGTAAAGCCTGTAAAAGATATTGGACAAGAGGTGGAACACTTAGAAACGTTCCTGTTGGTGGTGGTTGCAGAAAAAACAAACGTCTTAAACGACCAAATCACTCTTCTTCAAACATTGATACTGCTACTGCTTCTCCTTCTTCTTCAACTCCTACTAGTGCTAATTCAAACCCTTCTTCTCAACAACAACAACACCATAGTTTTGATATTGCTTCTACCTCAAACCATATCAATTCTCTTCTTTATGGTAACTCTTCTTGTCATGATGTGATGAACTTTCCTTTTGCAACAAGGTTCAATTCTACTAGAGTTTCAAGTTCTTCTTCTGGTTATGATCATCTTCAGCAGCAGCAGCCTCAGGTGAATGGTCTTGGATTAGGTTTTTCATCTGGGGTAGTTAATCTTAATCATCATGATGATTACAGAAATGGATTTGGTTCAAATAATAACAACTACAGTTCCATCTTTGGTTCTTCTTCTATTTCAACTAATGATAACTCCATGGCCTCTACTACTCCAGTTATGGCTTCTCTACTTAACTCTACACTACTACAACAGAAATTCATGAGTACAGCTGCTGCTGCTGCTGCTGGTGGTGGTGGAATGAAAGGTGGTGATCCTTTTCATCATGAGGCTGGGATAATGGATTCAAAAGAAGTGAAACTAGGTGAAGGACTACAAAATAGGTTGGATCAGTGGAGTAATAATATGAATGCTAATGGTGGTGTTGCTTTTCAAAACCAGATGGAGAACATGGGTTTGTCAGATTCTTCTTCTCTTTATTGGAATAACAACAACACCAACAACAACAACACTGCAGCAACAGGTTTGAGTAGTGTTTGGAGTATTGATCACCAACCTAATAATATTGGTCATAATTCAGTTATTCTCTGA
Protein sequence

>Msa0695430

MFGNCVDEKTVITCNKLTQAEIDDRKVSMASSSGGNRVMEKPGQELLQQQQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPNHSSSNIDTATASPSSSTPTSANSNPSSQQQQHHSFDIASTSNHINSLLYGNSSCHDVMNFPFATRFNSTRVSSSSSGYDHLQQQQPQVNGLGLGFSSGVVNLNHHDDYRNGFGSNNNNYSSIFGSSSISTNDNSMASTTPVMASLLNSTLLQQKFMSTAAAAAAGGGGMKGGDPFHHEAGIMDSKEVKLGEGLQNRLDQWSNNMNANGGVAFQNQMENMGLSDSSSLYWNNNNTNNNNTAATGLSSVWSIDHQPNNIGHNSVIL*