Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198620 | XP_003594552.1 | 91.626 | 621 | 26 | 4 | 1 | 599 | 1 | 617 | 0.0 | 1131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198620 | sp|Q9SUC3|MS5_ARATH | 55.319 | 282 | 120 | 3 | 2 | 279 | 4 | 283 | 5.62e-103 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198620 | G7IKX2 | 91.626 | 621 | 26 | 4 | 1 | 599 | 1 | 617 | 0.0 | 1131 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0198620 | Msa0292400 | 0.810774 | 9.753996e-51 | -8.615850e-47 |
| Msa0198620 | Msa0318790 | 0.822726 | 2.030243e-53 | -8.615850e-47 |
| Msa0198620 | Msa0532070 | 0.806643 | 7.445220e-50 | -8.615850e-47 |
| Msa0198620 | Msa0580370 | 0.802326 | 5.916959e-49 | -8.615850e-47 |
| Msa0198620 | Msa0683570 | 0.803221 | 3.865171e-49 | -8.615850e-47 |
| Msa0198620 | Msa0724910 | 0.800832 | 1.197826e-48 | -8.615850e-47 |
| Msa0198620 | Msa0795870 | 0.815469 | 9.097795e-52 | -8.615850e-47 |
| Msa0198620 | Msa0833650 | 0.807864 | 4.103788e-50 | -8.615850e-47 |
| Msa0198620 | Msa0896540 | 0.804118 | 2.518691e-49 | -8.615850e-47 |
| Msa0198620 | Msa1132840 | 0.803769 | 2.975939e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198620 | MtrunA17_Chr2g0292681 | 91.626 | 621 | 26 | 4 | 1 | 599 | 1 | 617 | 0.0 | 1131 |
| Msa0198620 | MtrunA17_Chr2g0292671 | 93.210 | 162 | 11 | 0 | 117 | 278 | 2 | 163 | 2.97e-98 | 297 |
| Msa0198620 | MtrunA17_Chr8g0371521 | 56.522 | 253 | 109 | 1 | 25 | 276 | 13 | 265 | 1.14e-92 | 293 |
| Msa0198620 | MtrunA17_Chr7g0237581 | 55.508 | 236 | 102 | 1 | 44 | 279 | 20 | 252 | 6.29e-86 | 270 |
| Msa0198620 | MtrunA17_Chr7g0237621 | 54.772 | 241 | 106 | 1 | 44 | 284 | 32 | 269 | 7.27e-85 | 267 |
| Msa0198620 | MtrunA17_Chr2g0292661 | 84.906 | 106 | 10 | 2 | 1 | 103 | 1 | 103 | 1.02e-54 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0198620 | AT4G20900.2 | 55.319 | 282 | 120 | 3 | 2 | 279 | 4 | 283 | 5.71e-104 | 321 |
| Msa0198620 | AT4G20900.1 | 52.349 | 298 | 120 | 4 | 2 | 279 | 4 | 299 | 1.50e-99 | 310 |
| Msa0198620 | AT3G51280.1 | 55.336 | 253 | 112 | 1 | 25 | 276 | 7 | 259 | 1.78e-88 | 281 |
| Msa0198620 | AT5G44330.1 | 51.661 | 271 | 125 | 2 | 5 | 275 | 7 | 271 | 2.23e-85 | 274 |
| Msa0198620 | AT5G48850.1 | 57.547 | 212 | 89 | 1 | 37 | 247 | 15 | 226 | 1.44e-82 | 261 |
| Msa0198620 | AT1G04770.1 | 56.338 | 213 | 87 | 1 | 32 | 244 | 10 | 216 | 5.36e-75 | 241 |
| Msa0198620 | AT5G22794.2 | 41.667 | 72 | 42 | 0 | 120 | 191 | 66 | 137 | 1.05e-11 | 65.5 |
Find 126 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATACTCCACACCGAATT+TGG | 0.197802 | 2_1:+17245637 | Msa0198620:CDS |
| CTCCTCGCACTGACACAAAT+TGG | 0.214620 | 2_1:+17245942 | Msa0198620:CDS |
| GATTTCTTTCTCTCAGAAAA+TGG | 0.226099 | 2_1:-17244041 | None:intergenic |
| CCTTGCTTTACTGCTGTTGC+AGG | 0.239712 | 2_1:-17246010 | None:intergenic |
| GTTATTCATAAGGTTCCTTC+TGG | 0.250721 | 2_1:+17244101 | Msa0198620:CDS |
| AGTTCAATAATTCAAGATTC+TGG | 0.282103 | 2_1:-17246467 | None:intergenic |
| AAACTGCTGAAGAACATTAT+AGG | 0.304137 | 2_1:+17245294 | Msa0198620:CDS |
| TAGGAACAAACAGTGCAATT+TGG | 0.304689 | 2_1:+17245439 | Msa0198620:CDS |
| GAAGAAGAGTTGGGCGGATA+TGG | 0.311022 | 2_1:+17246293 | Msa0198620:CDS |
| CATCTTGGTTGAACTCTATA+AGG | 0.323260 | 2_1:+17244700 | Msa0198620:CDS |
| AACCCATTCTGTGTTGAGTT+TGG | 0.324775 | 2_1:-17245917 | None:intergenic |
| GCTTGGGCCTACTTGCAAAA+AGG | 0.327423 | 2_1:+17245263 | Msa0198620:CDS |
| TGTTAAAGCCAAACAGGTTC+AGG | 0.331268 | 2_1:+17244136 | Msa0198620:CDS |
| ATGAGAATGATGAGATTCTT+TGG | 0.333088 | 2_1:-17245732 | None:intergenic |
| CCATTTGAGCTCTCCAAATT+CGG | 0.336612 | 2_1:-17245650 | None:intergenic |
| TCTTTATTCACAGAAGCTTC+TGG | 0.341956 | 2_1:-17244065 | None:intergenic |
| GATGCTGCAATAGTAAAATA+TGG | 0.343633 | 2_1:+17245986 | Msa0198620:CDS |
| CGAGAGTGCCTTGAAGGATA+TGG | 0.372126 | 2_1:+17244577 | Msa0198620:CDS |
| AACAAGGAGAGCCAGGTTGC+AGG | 0.377318 | 2_1:+17246617 | Msa0198620:CDS |
| CCGAATTTGGAGAGCTCAAA+TGG | 0.379534 | 2_1:+17245650 | Msa0198620:CDS |
| ACCTGTTTGGCTTTAACATA+AGG | 0.380773 | 2_1:-17244131 | None:intergenic |
| CAAGAGATATCAAGGATACT+TGG | 0.381295 | 2_1:+17245233 | Msa0198620:CDS |
| ATGTAAGGAGCCTTCTCATT+AGG | 0.388722 | 2_1:-17245887 | None:intergenic |
| TGTATTTACCTGAACCTGTT+TGG | 0.388891 | 2_1:-17244144 | None:intergenic |
| CACTGTCCTTTGAGGTTGAT+AGG | 0.391070 | 2_1:+17245420 | Msa0198620:CDS |
| TTCTGGGCTGCCATCAATGC+TGG | 0.391601 | 2_1:+17244545 | Msa0198620:CDS |
| GACGCGATCACCAGCATTGA+TGG | 0.392146 | 2_1:-17244555 | None:intergenic |
| CAGAAAAGCACTGTCCTTTG+AGG | 0.398933 | 2_1:+17245412 | Msa0198620:intron |
| TCCTTATGTTAAAGCCAAAC+AGG | 0.403801 | 2_1:+17244130 | Msa0198620:CDS |
| ACTATTGCAGCATCACCTTC+CGG | 0.407901 | 2_1:-17245977 | None:intergenic |
| GGAGTCATGTAGCACCTTGC+CGG | 0.410106 | 2_1:-17243975 | None:intergenic |
| CATTGATGGCAGCCCAGAAA+AGG | 0.416287 | 2_1:-17244541 | None:intergenic |
| GGATACTTGGGAACTTGGCT+TGG | 0.418538 | 2_1:+17245246 | Msa0198620:CDS |
| GAGTTTGGCTTAATAATGTA+AGG | 0.419019 | 2_1:-17245902 | None:intergenic |
| TCGCGTCGAGAGTGCCTTGA+AGG | 0.421679 | 2_1:+17244571 | Msa0198620:CDS |
| AACTAAAGCCATATCCTTCA+AGG | 0.422487 | 2_1:-17244585 | None:intergenic |
| ATCAAGGATACTTGGGAACT+TGG | 0.426919 | 2_1:+17245241 | Msa0198620:CDS |
| AATGAAAGGGATGTATTCTC+TGG | 0.431775 | 2_1:+17246582 | Msa0198620:CDS |
| TTGTTATTGTTGTAGAGGTC+AGG | 0.432018 | 2_1:+17245083 | Msa0198620:intron |
| CAGTTAGTGGATAAAGATCC+AGG | 0.435700 | 2_1:+17244506 | Msa0198620:intron |
| TGGTTTCAGGCTTCAGGATG+AGG | 0.442996 | 2_1:-17246658 | None:intergenic |
| TCTCTGCCCTTCTGATTCTC+AGG | 0.443464 | 2_1:+17244664 | Msa0198620:CDS |
| TTCATTTGTCATTTCCGCAT+TGG | 0.449306 | 2_1:-17246565 | None:intergenic |
| TTAGGATAACTCACAAATGA+AGG | 0.450079 | 2_1:-17245869 | None:intergenic |
| GGAATCTCTTGACAACATCT+TGG | 0.450411 | 2_1:+17244685 | Msa0198620:CDS |
| AACAGAAGCTGCAAATTCAT+TGG | 0.456718 | 2_1:-17246143 | None:intergenic |
| AGAAGCGAACAAGGAGAGCC+AGG | 0.461543 | 2_1:+17246610 | Msa0198620:CDS |
| AGAGTAGGACAGAAAATAAC+CGG | 0.464589 | 2_1:+17245693 | Msa0198620:CDS |
| TTATTCATAAGGTTCCTTCT+GGG | 0.467739 | 2_1:+17244102 | Msa0198620:CDS |
| GATACTTGGGAACTTGGCTT+GGG | 0.467740 | 2_1:+17245247 | Msa0198620:CDS |
| CGCCATCGTCATCGTCATCA+TGG | 0.467936 | 2_1:+17243997 | Msa0198620:CDS |
| TAGTTATGAAGCAACTGAAC+CGG | 0.471911 | 2_1:+17244603 | Msa0198620:CDS |
| AGCCAAACTCAACACAGAAT+GGG | 0.473682 | 2_1:+17245915 | Msa0198620:CDS |
| AAAAGGGAAATTGCTTTACC+TGG | 0.474611 | 2_1:-17244524 | None:intergenic |
| TTTGTGTAAGGAGGAACCTT+CGG | 0.474736 | 2_1:-17245800 | None:intergenic |
| AAGCCAAACTCAACACAGAA+TGG | 0.476640 | 2_1:+17245914 | Msa0198620:CDS |
| GAATTATTGAACTTGAAAGA+TGG | 0.482380 | 2_1:+17246477 | Msa0198620:CDS |
| CAACAAATCTCATACAAAGT+TGG | 0.489792 | 2_1:+17246114 | Msa0198620:CDS |
| CATCGTCATCATGGAAATCA+AGG | 0.500251 | 2_1:+17244006 | Msa0198620:CDS |
| CTGCACCTGTGAATGATACT+TGG | 0.504642 | 2_1:+17246508 | Msa0198620:CDS |
| ATAGCTGCTTCTGTGTTCAA+AGG | 0.511003 | 2_1:-17246070 | None:intergenic |
| GTGCTGAACAAGAGATATCA+AGG | 0.512190 | 2_1:+17245225 | Msa0198620:CDS |
| ATTGATGGCAGCCCAGAAAA+GGG | 0.512233 | 2_1:-17244540 | None:intergenic |
| CTGGAGAGGAGAAGCGAACA+AGG | 0.513061 | 2_1:+17246601 | Msa0198620:CDS |
| GAAGATGGTATGACATATGT+TGG | 0.513644 | 2_1:+17245155 | Msa0198620:CDS |
| AGAAGCAAGATTTCTACTTC+AGG | 0.516971 | 2_1:+17245493 | Msa0198620:CDS |
| AACTGGCGAAGAAGAAGAGT+TGG | 0.522842 | 2_1:+17246283 | Msa0198620:CDS |
| AGTATGAGTTATTCTACAAA+GGG | 0.523931 | 2_1:+17246340 | Msa0198620:CDS |
| GACGTTTGAAAGAAACTCTC+CGG | 0.524804 | 2_1:+17243956 | Msa0198620:CDS |
| CTTCGATTGCTTCATCAGAC+CGG | 0.532814 | 2_1:-17244622 | None:intergenic |
| TATTCATAAGGTTCCTTCTG+GGG | 0.538359 | 2_1:+17244103 | Msa0198620:CDS |
| AATCTCATCATTCTCATGCT+AGG | 0.540394 | 2_1:+17245738 | Msa0198620:CDS |
| ATTGTTGTAGAGGTCAGGAA+GGG | 0.542418 | 2_1:+17245088 | Msa0198620:intron |
| AACAACGAACGCCTTACAGT+TGG | 0.543086 | 2_1:-17246540 | None:intergenic |
| TGCGGAAATGACAAATGAAA+GGG | 0.543181 | 2_1:+17246569 | Msa0198620:CDS |
| GATACAAAAGACCAAAATCA+AGG | 0.543998 | 2_1:+17246166 | Msa0198620:CDS |
| GGTTGAGGAATCCAACTGTA+AGG | 0.546675 | 2_1:+17246529 | Msa0198620:CDS |
| ATGCGGAAATGACAAATGAA+AGG | 0.547001 | 2_1:+17246568 | Msa0198620:CDS |
| GCAAAACATGCAAGATCTCA+AGG | 0.551519 | 2_1:+17245185 | Msa0198620:CDS |
| GAGAATCAGAAGGGCAGAGA+TGG | 0.552406 | 2_1:-17244661 | None:intergenic |
| ATGGAGTCAACAGCACCACC+AGG | 0.552571 | 2_1:+17245599 | Msa0198620:CDS |
| TATTGTTGTAGAGGTCAGGA+AGG | 0.553264 | 2_1:+17245087 | Msa0198620:intron |
| CTCAACCAAGTATCATTCAC+AGG | 0.564017 | 2_1:-17246513 | None:intergenic |
| AAGAGATATCAAGGATACTT+GGG | 0.565042 | 2_1:+17245234 | Msa0198620:CDS |
| TCAGAAAATGGAGAACGTGC+AGG | 0.565835 | 2_1:-17244029 | None:intergenic |
| CTGACACAAATTGGAGAACA+AGG | 0.572861 | 2_1:+17245951 | Msa0198620:CDS |
| CTCCAATTTGTGTCAGTGCG+AGG | 0.574309 | 2_1:-17245944 | None:intergenic |
| TGTGATGACATATTCCTCCC+TGG | 0.576964 | 2_1:-17245617 | None:intergenic |
| ACTGGCGAAGAAGAAGAGTT+GGG | 0.579173 | 2_1:+17246284 | Msa0198620:CDS |
| AAATGGAAAGACCACTGATA+CGG | 0.580779 | 2_1:+17245667 | Msa0198620:CDS |
| GAGTATGAGTTATTCTACAA+AGG | 0.581799 | 2_1:+17246339 | Msa0198620:CDS |
| AATCAGAAGGGCAGAGATGG+CGG | 0.582287 | 2_1:-17244658 | None:intergenic |
| AAGTTGAAGCAAATTGAAGA+TGG | 0.583679 | 2_1:+17245140 | Msa0198620:CDS |
| TACACAAATGCTGCAAGAGA+TGG | 0.588606 | 2_1:+17245580 | Msa0198620:CDS |
| TGTGAGTTATCCTAATGAGA+AGG | 0.593270 | 2_1:+17245877 | Msa0198620:CDS |
| TCCTGCAAAATCCGATCCGA+AGG | 0.595239 | 2_1:+17245784 | Msa0198620:CDS |
| AGAGATTCCTGAGAATCAGA+AGG | 0.602703 | 2_1:-17244671 | None:intergenic |
| TGGCATCAGATGTCAAAGAC+CGG | 0.602945 | 2_1:-17245712 | None:intergenic |
| TTGTAATGTGACCGACGAGA+AGG | 0.603818 | 2_1:-17246429 | None:intergenic |
| ATGGTATGACATATGTTGGA+AGG | 0.607080 | 2_1:+17245159 | Msa0198620:CDS |
| TTTCAGGCTTCAGGATGAGG+AGG | 0.622716 | 2_1:-17246655 | None:intergenic |
| TTTGTTCCTATCAACCTCAA+AGG | 0.625304 | 2_1:-17245426 | None:intergenic |
| CATGATGACGATGACGATGG+CGG | 0.626423 | 2_1:-17243996 | None:intergenic |
| CTGTGAATGATACTTGGTTG+AGG | 0.629053 | 2_1:+17246514 | Msa0198620:CDS |
| CCACTGATACGGTTAAGAGT+AGG | 0.632752 | 2_1:+17245678 | Msa0198620:CDS |
| TAATGTGACCGACGAGAAGG+AGG | 0.634041 | 2_1:-17246426 | None:intergenic |
| AAGGGATGTATTCTCTGGAG+AGG | 0.640670 | 2_1:+17246587 | Msa0198620:CDS |
| TGGAGAACAAGGACACCGGA+AGG | 0.640937 | 2_1:+17245962 | Msa0198620:CDS |
| CAAAACATGCAAGATCTCAA+GGG | 0.644877 | 2_1:+17245186 | Msa0198620:CDS |
| GAGATTCCTGAGAATCAGAA+GGG | 0.645235 | 2_1:-17244670 | None:intergenic |
| TTGAAAGAAACTCTCCGGCA+AGG | 0.645421 | 2_1:+17243961 | Msa0198620:CDS |
| ACATAAGGAGAATCCCCAGA+AGG | 0.655272 | 2_1:-17244116 | None:intergenic |
| CCTGCAACAGCAGTAAAGCA+AGG | 0.655550 | 2_1:+17246010 | Msa0198620:CDS |
| GCGTTCGTTGTTTACCAATG+CGG | 0.655956 | 2_1:+17246551 | Msa0198620:CDS |
| TCTATCAACCTCCTTCTCGT+CGG | 0.657812 | 2_1:+17246418 | Msa0198620:CDS |
| GTAAGGAGGAACCTTCGGAT+CGG | 0.666757 | 2_1:-17245795 | None:intergenic |
| TGACTGTTGAAACCCCATGA+AGG | 0.674237 | 2_1:-17245833 | None:intergenic |
| TCTACTTCAGGCAGTAACCG+CGG | 0.674832 | 2_1:+17245505 | Msa0198620:CDS |
| AAATTGGAGAACAAGGACAC+CGG | 0.677409 | 2_1:+17245958 | Msa0198620:CDS |
| TTCCATGATGACGATGACGA+TGG | 0.682795 | 2_1:-17243999 | None:intergenic |
| TGAGCTCTCCAAATTCGGTG+TGG | 0.685828 | 2_1:-17245645 | None:intergenic |
| CCTACTCTTAACCGTATCAG+TGG | 0.687210 | 2_1:-17245678 | None:intergenic |
| GGCGAAGAAGAAGAGTTGGG+CGG | 0.709893 | 2_1:+17246287 | Msa0198620:CDS |
| TGGAGTCAACAGCACCACCA+GGG | 0.710851 | 2_1:+17245600 | Msa0198620:CDS |
| GATGACATATTCCTCCCTGG+TGG | 0.743091 | 2_1:-17245614 | None:intergenic |
| AGTCAACAGCACCACCAGGG+AGG | 0.755887 | 2_1:+17245603 | Msa0198620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTTTCTTTCTTTGA+TGG | + | chr2_1:17244302-17244321 | Msa0198620:intron | 15.0% |
| !!! | AATTTTTTTCTTTCTTTGAT+GGG | + | chr2_1:17244303-17244322 | Msa0198620:intron | 15.0% |
| !! | ATTTGAATAAACTTACAAAA+AGG | + | chr2_1:17244860-17244879 | Msa0198620:intron | 15.0% |
| !!! | ATTATTACTTTTCTCTTTAT+AGG | - | chr2_1:17245371-17245390 | None:intergenic | 15.0% |
| !!! | TCTTTTTCATGTTATTCATA+AGG | + | chr2_1:17244091-17244110 | Msa0198620:CDS | 20.0% |
| !! | ACAATCAAAATAGAAACTTT+AGG | - | chr2_1:17244182-17244201 | None:intergenic | 20.0% |
| !!! | TATCAGTTAATTTTCTTTCT+TGG | + | chr2_1:17244448-17244467 | Msa0198620:intron | 20.0% |
| !! | GAGATAATTAACTAACATAA+AGG | - | chr2_1:17244765-17244784 | None:intergenic | 20.0% |
| !! | CTAAATGTTACAAATTAACA+AGG | - | chr2_1:17244907-17244926 | None:intergenic | 20.0% |
| !!! | CTTGTTAATTTGTAACATTT+AGG | + | chr2_1:17244905-17244924 | Msa0198620:intron | 20.0% |
| !! | ACTAACAGTAGTATTTAATA+TGG | - | chr2_1:17246205-17246224 | None:intergenic | 20.0% |
| !!! | TTTTGATTGTTTTTGTCTTC+TGG | + | chr2_1:17244192-17244211 | Msa0198620:intron | 25.0% |
| !!! | TTTGATTGTTTTTGTCTTCT+GGG | + | chr2_1:17244193-17244212 | Msa0198620:intron | 25.0% |
| ! | AATCAAAATACAAACAGCTA+AGG | - | chr2_1:17244837-17244856 | None:intergenic | 25.0% |
| ! | TGAATAAACTTACAAAAAGG+TGG | + | chr2_1:17244863-17244882 | Msa0198620:intron | 25.0% |
| ! | GAATAAACTTACAAAAAGGT+GGG | + | chr2_1:17244864-17244883 | Msa0198620:intron | 25.0% |
| ! | ATTTAGGTGTATCATTAAGT+AGG | + | chr2_1:17244921-17244940 | Msa0198620:intron | 25.0% |
| !! | GTTTCCTATTTTATTGTTGA+AGG | + | chr2_1:17245025-17245044 | Msa0198620:intron | 25.0% |
| ! | GTAACCTTCAACAATAAAAT+AGG | - | chr2_1:17245032-17245051 | None:intergenic | 25.0% |
| ! | CATGTATAAACCATTAATGT+TGG | - | chr2_1:17245059-17245078 | None:intergenic | 25.0% |
| !! | GTATATTGTTATTGTTGTAG+AGG | + | chr2_1:17245078-17245097 | Msa0198620:intron | 25.0% |
| !!! | CATTTTGTTTCCATCTAAAT+AGG | - | chr2_1:17245326-17245345 | None:intergenic | 25.0% |
| !! | ATTTTACACTACCTTGATTT+TGG | - | chr2_1:17246180-17246199 | None:intergenic | 25.0% |
| ! | AGTATGAGTTATTCTACAAA+GGG | + | chr2_1:17246340-17246359 | Msa0198620:CDS | 25.0% |
| ! | AGTTCAATAATTCAAGATTC+TGG | - | chr2_1:17246470-17246489 | None:intergenic | 25.0% |
| ! | GAATTATTGAACTTGAAAGA+TGG | + | chr2_1:17246477-17246496 | Msa0198620:CDS | 25.0% |
| GATTTCTTTCTCTCAGAAAA+TGG | - | chr2_1:17244044-17244063 | None:intergenic | 30.0% | |
| TTATTCATAAGGTTCCTTCT+GGG | + | chr2_1:17244102-17244121 | Msa0198620:CDS | 30.0% | |
| AATACAAGACCAAGAATTCA+AGG | - | chr2_1:17244241-17244260 | None:intergenic | 30.0% | |
| !! | TATCGTTTTGATAGAGTTTG+AGG | + | chr2_1:17244333-17244352 | Msa0198620:intron | 30.0% |
| !! | ATCGTTTTGATAGAGTTTGA+GGG | + | chr2_1:17244334-17244353 | Msa0198620:intron | 30.0% |
| TCTGAATTCTTTACAGTTAG+TGG | + | chr2_1:17244493-17244512 | Msa0198620:intron | 30.0% | |
| ! | TAAAGCAATTTCCCTTTTCT+GGG | + | chr2_1:17244529-17244548 | Msa0198620:CDS | 30.0% |
| AGATTAGTATCTCGTATTGT+AGG | + | chr2_1:17244985-17245004 | Msa0198620:intron | 30.0% | |
| AAGTTGAAGCAAATTGAAGA+TGG | + | chr2_1:17245140-17245159 | Msa0198620:CDS | 30.0% | |
| AAGAGATATCAAGGATACTT+GGG | + | chr2_1:17245234-17245253 | Msa0198620:CDS | 30.0% | |
| AAACTGCTGAAGAACATTAT+AGG | + | chr2_1:17245294-17245313 | Msa0198620:CDS | 30.0% | |
| TAGGTAAACTCCTATTTAGA+TGG | + | chr2_1:17245313-17245332 | Msa0198620:intron | 30.0% | |
| CTGCATAAACAAAACAAACA+AGG | - | chr2_1:17245395-17245414 | None:intergenic | 30.0% | |
| ATGAGAATGATGAGATTCTT+TGG | - | chr2_1:17245735-17245754 | None:intergenic | 30.0% | |
| AAAACCAAAAAGACCTTCAT+GGG | + | chr2_1:17245820-17245839 | Msa0198620:CDS | 30.0% | |
| TTAGGATAACTCACAAATGA+AGG | - | chr2_1:17245872-17245891 | None:intergenic | 30.0% | |
| ! | GAGTTTGGCTTAATAATGTA+AGG | - | chr2_1:17245905-17245924 | None:intergenic | 30.0% |
| GATGCTGCAATAGTAAAATA+TGG | + | chr2_1:17245986-17246005 | Msa0198620:CDS | 30.0% | |
| CAACAAATCTCATACAAAGT+TGG | + | chr2_1:17246114-17246133 | Msa0198620:CDS | 30.0% | |
| GATACAAAAGACCAAAATCA+AGG | + | chr2_1:17246166-17246185 | Msa0198620:CDS | 30.0% | |
| TGAATTTGCAGACAAAAAAC+TGG | + | chr2_1:17246266-17246285 | Msa0198620:intron | 30.0% | |
| GAGTATGAGTTATTCTACAA+AGG | + | chr2_1:17246339-17246358 | Msa0198620:CDS | 30.0% | |
| TCTTTATTCACAGAAGCTTC+TGG | - | chr2_1:17244068-17244087 | None:intergenic | 35.0% | |
| GTTATTCATAAGGTTCCTTC+TGG | + | chr2_1:17244101-17244120 | Msa0198620:CDS | 35.0% | |
| TATTCATAAGGTTCCTTCTG+GGG | + | chr2_1:17244103-17244122 | Msa0198620:CDS | 35.0% | |
| TCCTTATGTTAAAGCCAAAC+AGG | + | chr2_1:17244130-17244149 | Msa0198620:CDS | 35.0% | |
| !! | ACCTGTTTGGCTTTAACATA+AGG | - | chr2_1:17244134-17244153 | None:intergenic | 35.0% |
| TGTATTTACCTGAACCTGTT+TGG | - | chr2_1:17244147-17244166 | None:intergenic | 35.0% | |
| !! | TCGTTTTGATAGAGTTTGAG+GGG | + | chr2_1:17244335-17244354 | Msa0198620:intron | 35.0% |
| AAAAGGGAAATTGCTTTACC+TGG | - | chr2_1:17244527-17244546 | None:intergenic | 35.0% | |
| ! | GTAAAGCAATTTCCCTTTTC+TGG | + | chr2_1:17244528-17244547 | Msa0198620:CDS | 35.0% |
| AACTAAAGCCATATCCTTCA+AGG | - | chr2_1:17244588-17244607 | None:intergenic | 35.0% | |
| TAGTTATGAAGCAACTGAAC+CGG | + | chr2_1:17244603-17244622 | Msa0198620:CDS | 35.0% | |
| CATCTTGGTTGAACTCTATA+AGG | + | chr2_1:17244700-17244719 | Msa0198620:CDS | 35.0% | |
| CATGCATTTGAATGATAAGC+TGG | + | chr2_1:17244787-17244806 | Msa0198620:intron | 35.0% | |
| CTTACAAAAAGGTGGGAATT+TGG | + | chr2_1:17244871-17244890 | Msa0198620:intron | 35.0% | |
| GGTTACGAAACCAACATTAA+TGG | + | chr2_1:17245046-17245065 | Msa0198620:intron | 35.0% | |
| ! | TTGTTATTGTTGTAGAGGTC+AGG | + | chr2_1:17245083-17245102 | Msa0198620:intron | 35.0% |
| GAAGATGGTATGACATATGT+TGG | + | chr2_1:17245155-17245174 | Msa0198620:CDS | 35.0% | |
| ATGGTATGACATATGTTGGA+AGG | + | chr2_1:17245159-17245178 | Msa0198620:CDS | 35.0% | |
| CAAAACATGCAAGATCTCAA+GGG | + | chr2_1:17245186-17245205 | Msa0198620:CDS | 35.0% | |
| CAAGAGATATCAAGGATACT+TGG | + | chr2_1:17245233-17245252 | Msa0198620:CDS | 35.0% | |
| ! | ATAATCGCCTTTTTGCAAGT+AGG | - | chr2_1:17245273-17245292 | None:intergenic | 35.0% |
| TTTGTTCCTATCAACCTCAA+AGG | - | chr2_1:17245429-17245448 | None:intergenic | 35.0% | |
| TAGGAACAAACAGTGCAATT+TGG | + | chr2_1:17245439-17245458 | Msa0198620:CDS | 35.0% | |
| AGAAGCAAGATTTCTACTTC+AGG | + | chr2_1:17245493-17245512 | Msa0198620:CDS | 35.0% | |
| AAATGGAAAGACCACTGATA+CGG | + | chr2_1:17245667-17245686 | Msa0198620:CDS | 35.0% | |
| AGAGTAGGACAGAAAATAAC+CGG | + | chr2_1:17245693-17245712 | Msa0198620:CDS | 35.0% | |
| AATCTCATCATTCTCATGCT+AGG | + | chr2_1:17245738-17245757 | Msa0198620:CDS | 35.0% | |
| !!! | CTTTTTGGTTTTGTGTAAGG+AGG | - | chr2_1:17245812-17245831 | None:intergenic | 35.0% |
| !!! | GGTCTTTTTGGTTTTGTGTA+AGG | - | chr2_1:17245815-17245834 | None:intergenic | 35.0% |
| CAAAACCAAAAAGACCTTCA+TGG | + | chr2_1:17245819-17245838 | Msa0198620:CDS | 35.0% | |
| AAACCAAAAAGACCTTCATG+GGG | + | chr2_1:17245821-17245840 | Msa0198620:CDS | 35.0% | |
| TGTGAGTTATCCTAATGAGA+AGG | + | chr2_1:17245877-17245896 | Msa0198620:CDS | 35.0% | |
| ! | GGAAACACAACAACAGTTTT+CGG | + | chr2_1:17246031-17246050 | Msa0198620:CDS | 35.0% |
| AACAGAAGCTGCAAATTCAT+TGG | - | chr2_1:17246146-17246165 | None:intergenic | 35.0% | |
| ! | TTCATTTGTCATTTCCGCAT+TGG | - | chr2_1:17246568-17246587 | None:intergenic | 35.0% |
| ATGCGGAAATGACAAATGAA+AGG | + | chr2_1:17246568-17246587 | Msa0198620:CDS | 35.0% | |
| TGCGGAAATGACAAATGAAA+GGG | + | chr2_1:17246569-17246588 | Msa0198620:CDS | 35.0% | |
| AATGAAAGGGATGTATTCTC+TGG | + | chr2_1:17246582-17246601 | Msa0198620:CDS | 35.0% | |
| GACGTTTGAAAGAAACTCTC+CGG | + | chr2_1:17243956-17243975 | Msa0198620:CDS | 40.0% | |
| CATCGTCATCATGGAAATCA+AGG | + | chr2_1:17244006-17244025 | Msa0198620:CDS | 40.0% | |
| TGTTAAAGCCAAACAGGTTC+AGG | + | chr2_1:17244136-17244155 | Msa0198620:CDS | 40.0% | |
| ! | CTTCTGGGTTGTGATGTTTT+TGG | + | chr2_1:17244208-17244227 | Msa0198620:intron | 40.0% |
| !!! | TGGGTTGTGATGTTTTTGGT+TGG | + | chr2_1:17244212-17244231 | Msa0198620:intron | 40.0% |
| !! | GGTTGGTTTCCTTGAATTCT+TGG | + | chr2_1:17244229-17244248 | Msa0198620:intron | 40.0% |
| AGTTTGAGGGGTAGAATATG+TGG | + | chr2_1:17244347-17244366 | Msa0198620:intron | 40.0% | |
| ! | CAGTTAGTGGATAAAGATCC+AGG | + | chr2_1:17244506-17244525 | Msa0198620:intron | 40.0% |
| GAGATTCCTGAGAATCAGAA+GGG | - | chr2_1:17244673-17244692 | None:intergenic | 40.0% | |
| AGAGATTCCTGAGAATCAGA+AGG | - | chr2_1:17244674-17244693 | None:intergenic | 40.0% | |
| GGAATCTCTTGACAACATCT+TGG | + | chr2_1:17244685-17244704 | Msa0198620:CDS | 40.0% | |
| TATTGTTGTAGAGGTCAGGA+AGG | + | chr2_1:17245087-17245106 | Msa0198620:intron | 40.0% | |
| ATTGTTGTAGAGGTCAGGAA+GGG | + | chr2_1:17245088-17245107 | Msa0198620:intron | 40.0% | |
| GCAAAACATGCAAGATCTCA+AGG | + | chr2_1:17245185-17245204 | Msa0198620:CDS | 40.0% | |
| GTGCTGAACAAGAGATATCA+AGG | + | chr2_1:17245225-17245244 | Msa0198620:CDS | 40.0% | |
| ATCAAGGATACTTGGGAACT+TGG | + | chr2_1:17245241-17245260 | Msa0198620:CDS | 40.0% | |
| GGCGACAAAAAACAGAAAGA+TGG | + | chr2_1:17245526-17245545 | Msa0198620:CDS | 40.0% | |
| TACACAAATGCTGCAAGAGA+TGG | + | chr2_1:17245580-17245599 | Msa0198620:CDS | 40.0% | |
| ACAATACTCCACACCGAATT+TGG | + | chr2_1:17245637-17245656 | Msa0198620:CDS | 40.0% | |
| CCATTTGAGCTCTCCAAATT+CGG | - | chr2_1:17245653-17245672 | None:intergenic | 40.0% | |
| TTTGTGTAAGGAGGAACCTT+CGG | - | chr2_1:17245803-17245822 | None:intergenic | 40.0% | |
| ! | AAACCCCATGAAGGTCTTTT+TGG | - | chr2_1:17245827-17245846 | None:intergenic | 40.0% |
| ATGTAAGGAGCCTTCTCATT+AGG | - | chr2_1:17245890-17245909 | None:intergenic | 40.0% | |
| AAGCCAAACTCAACACAGAA+TGG | + | chr2_1:17245914-17245933 | Msa0198620:CDS | 40.0% | |
| AGCCAAACTCAACACAGAAT+GGG | + | chr2_1:17245915-17245934 | Msa0198620:CDS | 40.0% | |
| AACCCATTCTGTGTTGAGTT+TGG | - | chr2_1:17245920-17245939 | None:intergenic | 40.0% | |
| CTGACACAAATTGGAGAACA+AGG | + | chr2_1:17245951-17245970 | Msa0198620:CDS | 40.0% | |
| AAATTGGAGAACAAGGACAC+CGG | + | chr2_1:17245958-17245977 | Msa0198620:CDS | 40.0% | |
| ! | ACAACAACAGTTTTCGGTTC+TGG | + | chr2_1:17246037-17246056 | Msa0198620:CDS | 40.0% |
| ATAGCTGCTTCTGTGTTCAA+AGG | - | chr2_1:17246073-17246092 | None:intergenic | 40.0% | |
| CTCAACCAAGTATCATTCAC+AGG | - | chr2_1:17246516-17246535 | None:intergenic | 40.0% | |
| CTGTGAATGATACTTGGTTG+AGG | + | chr2_1:17246514-17246533 | Msa0198620:CDS | 40.0% | |
| TTGAAAGAAACTCTCCGGCA+AGG | + | chr2_1:17243961-17243980 | Msa0198620:CDS | 45.0% | |
| ! | TTCCATGATGACGATGACGA+TGG | - | chr2_1:17244002-17244021 | None:intergenic | 45.0% |
| TCAGAAAATGGAGAACGTGC+AGG | - | chr2_1:17244032-17244051 | None:intergenic | 45.0% | |
| ACATAAGGAGAATCCCCAGA+AGG | - | chr2_1:17244119-17244138 | None:intergenic | 45.0% | |
| ! | ATTGATGGCAGCCCAGAAAA+GGG | - | chr2_1:17244543-17244562 | None:intergenic | 45.0% |
| CTTCGATTGCTTCATCAGAC+CGG | - | chr2_1:17244625-17244644 | None:intergenic | 45.0% | |
| GATACTTGGGAACTTGGCTT+GGG | + | chr2_1:17245247-17245266 | Msa0198620:CDS | 45.0% | |
| !! | CAGAAAAGCACTGTCCTTTG+AGG | + | chr2_1:17245412-17245431 | Msa0198620:intron | 45.0% |
| !! | CACTGTCCTTTGAGGTTGAT+AGG | + | chr2_1:17245420-17245439 | Msa0198620:CDS | 45.0% |
| !!! | CTTTCTGTTTTTTGTCGCCG+CGG | - | chr2_1:17245525-17245544 | None:intergenic | 45.0% |
| TGTGATGACATATTCCTCCC+TGG | - | chr2_1:17245620-17245639 | None:intergenic | 45.0% | |
| CCGAATTTGGAGAGCTCAAA+TGG | + | chr2_1:17245650-17245669 | Msa0198620:CDS | 45.0% | |
| CCTACTCTTAACCGTATCAG+TGG | - | chr2_1:17245681-17245700 | None:intergenic | 45.0% | |
| CCACTGATACGGTTAAGAGT+AGG | + | chr2_1:17245678-17245697 | Msa0198620:CDS | 45.0% | |
| TGGCATCAGATGTCAAAGAC+CGG | - | chr2_1:17245715-17245734 | None:intergenic | 45.0% | |
| TGACTGTTGAAACCCCATGA+AGG | - | chr2_1:17245836-17245855 | None:intergenic | 45.0% | |
| ACTATTGCAGCATCACCTTC+CGG | - | chr2_1:17245980-17245999 | None:intergenic | 45.0% | |
| AACTGGCGAAGAAGAAGAGT+TGG | + | chr2_1:17246283-17246302 | Msa0198620:CDS | 45.0% | |
| ACTGGCGAAGAAGAAGAGTT+GGG | + | chr2_1:17246284-17246303 | Msa0198620:CDS | 45.0% | |
| TCTATCAACCTCCTTCTCGT+CGG | + | chr2_1:17246418-17246437 | Msa0198620:CDS | 45.0% | |
| TTGTAATGTGACCGACGAGA+AGG | - | chr2_1:17246432-17246451 | None:intergenic | 45.0% | |
| CTGCACCTGTGAATGATACT+TGG | + | chr2_1:17246508-17246527 | Msa0198620:CDS | 45.0% | |
| GGTTGAGGAATCCAACTGTA+AGG | + | chr2_1:17246529-17246548 | Msa0198620:CDS | 45.0% | |
| AACAACGAACGCCTTACAGT+TGG | - | chr2_1:17246543-17246562 | None:intergenic | 45.0% | |
| GCGTTCGTTGTTTACCAATG+CGG | + | chr2_1:17246551-17246570 | Msa0198620:CDS | 45.0% | |
| ! | AAGGGATGTATTCTCTGGAG+AGG | + | chr2_1:17246587-17246606 | Msa0198620:CDS | 45.0% |
| ATCCTGAAAAACCTGCAACC+TGG | - | chr2_1:17246631-17246650 | None:intergenic | 45.0% | |
| ! | CATGATGACGATGACGATGG+CGG | - | chr2_1:17243999-17244018 | None:intergenic | 50.0% |
| ! | CATTGATGGCAGCCCAGAAA+AGG | - | chr2_1:17244544-17244563 | None:intergenic | 50.0% |
| !! | CGAGAGTGCCTTGAAGGATA+TGG | + | chr2_1:17244577-17244596 | Msa0198620:CDS | 50.0% |
| AATCAGAAGGGCAGAGATGG+CGG | - | chr2_1:17244661-17244680 | None:intergenic | 50.0% | |
| GAGAATCAGAAGGGCAGAGA+TGG | - | chr2_1:17244664-17244683 | None:intergenic | 50.0% | |
| TCTCTGCCCTTCTGATTCTC+AGG | + | chr2_1:17244664-17244683 | Msa0198620:CDS | 50.0% | |
| GGATACTTGGGAACTTGGCT+TGG | + | chr2_1:17245246-17245265 | Msa0198620:CDS | 50.0% | |
| GCTTGGGCCTACTTGCAAAA+AGG | + | chr2_1:17245263-17245282 | Msa0198620:CDS | 50.0% | |
| TCTACTTCAGGCAGTAACCG+CGG | + | chr2_1:17245505-17245524 | Msa0198620:CDS | 50.0% | |
| GATGACATATTCCTCCCTGG+TGG | - | chr2_1:17245617-17245636 | None:intergenic | 50.0% | |
| ! | TGAGCTCTCCAAATTCGGTG+TGG | - | chr2_1:17245648-17245667 | None:intergenic | 50.0% |
| TCCTGCAAAATCCGATCCGA+AGG | + | chr2_1:17245784-17245803 | Msa0198620:CDS | 50.0% | |
| ! | ACCTTCGGATCGGATTTTGC+AGG | - | chr2_1:17245788-17245807 | None:intergenic | 50.0% |
| GTAAGGAGGAACCTTCGGAT+CGG | - | chr2_1:17245798-17245817 | None:intergenic | 50.0% | |
| ! | CTCCTCGCACTGACACAAAT+TGG | + | chr2_1:17245942-17245961 | Msa0198620:CDS | 50.0% |
| CTCCAATTTGTGTCAGTGCG+AGG | - | chr2_1:17245947-17245966 | None:intergenic | 50.0% | |
| CCTTGCTTTACTGCTGTTGC+AGG | - | chr2_1:17246013-17246032 | None:intergenic | 50.0% | |
| CCTGCAACAGCAGTAAAGCA+AGG | + | chr2_1:17246010-17246029 | Msa0198620:CDS | 50.0% | |
| GAAGAAGAGTTGGGCGGATA+TGG | + | chr2_1:17246293-17246312 | Msa0198620:CDS | 50.0% | |
| TAATGTGACCGACGAGAAGG+AGG | - | chr2_1:17246429-17246448 | None:intergenic | 50.0% | |
| ! | AGCCAGGTTGCAGGTTTTTC+AGG | + | chr2_1:17246626-17246645 | Msa0198620:CDS | 50.0% |
| GGAGTCATGTAGCACCTTGC+CGG | - | chr2_1:17243978-17243997 | None:intergenic | 55.0% | |
| CGCCATCGTCATCGTCATCA+TGG | + | chr2_1:17243997-17244016 | Msa0198620:CDS | 55.0% | |
| TTCTGGGCTGCCATCAATGC+TGG | + | chr2_1:17244545-17244564 | Msa0198620:CDS | 55.0% | |
| ! | GACGCGATCACCAGCATTGA+TGG | - | chr2_1:17244558-17244577 | None:intergenic | 55.0% |
| ATGGAGTCAACAGCACCACC+AGG | + | chr2_1:17245599-17245618 | Msa0198620:CDS | 55.0% | |
| TGGAGTCAACAGCACCACCA+GGG | + | chr2_1:17245600-17245619 | Msa0198620:CDS | 55.0% | |
| TGGAGAACAAGGACACCGGA+AGG | + | chr2_1:17245962-17245981 | Msa0198620:CDS | 55.0% | |
| GGCGAAGAAGAAGAGTTGGG+CGG | + | chr2_1:17246287-17246306 | Msa0198620:CDS | 55.0% | |
| CTGGAGAGGAGAAGCGAACA+AGG | + | chr2_1:17246601-17246620 | Msa0198620:CDS | 55.0% | |
| AGAAGCGAACAAGGAGAGCC+AGG | + | chr2_1:17246610-17246629 | Msa0198620:CDS | 55.0% | |
| AACAAGGAGAGCCAGGTTGC+AGG | + | chr2_1:17246617-17246636 | Msa0198620:CDS | 55.0% | |
| !! | TCGCGTCGAGAGTGCCTTGA+AGG | + | chr2_1:17244571-17244590 | Msa0198620:CDS | 60.0% |
| AGTCAACAGCACCACCAGGG+AGG | + | chr2_1:17245603-17245622 | Msa0198620:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 17243954 | 17246668 | 17243954 | ID=Msa0198620;Name=Msa0198620 |
| chr2_1 | mRNA | 17243954 | 17246668 | 17243954 | ID=Msa0198620-mRNA-1;Parent=Msa0198620;Name=Msa0198620-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0.75|0.4|1|1|1|5|0|599 |
| chr2_1 | exon | 17243954 | 17244157 | 17243954 | ID=Msa0198620-mRNA-1:exon:7287;Parent=Msa0198620-mRNA-1 |
| chr2_1 | exon | 17244509 | 17244721 | 17244509 | ID=Msa0198620-mRNA-1:exon:7288;Parent=Msa0198620-mRNA-1 |
| chr2_1 | exon | 17245098 | 17245315 | 17245098 | ID=Msa0198620-mRNA-1:exon:7289;Parent=Msa0198620-mRNA-1 |
| chr2_1 | exon | 17245415 | 17246187 | 17245415 | ID=Msa0198620-mRNA-1:exon:7290;Parent=Msa0198620-mRNA-1 |
| chr2_1 | exon | 17246277 | 17246668 | 17246277 | ID=Msa0198620-mRNA-1:exon:7291;Parent=Msa0198620-mRNA-1 |
| chr2_1 | CDS | 17243954 | 17244157 | 17243954 | ID=Msa0198620-mRNA-1:cds;Parent=Msa0198620-mRNA-1 |
| chr2_1 | CDS | 17244509 | 17244721 | 17244509 | ID=Msa0198620-mRNA-1:cds;Parent=Msa0198620-mRNA-1 |
| chr2_1 | CDS | 17245098 | 17245315 | 17245098 | ID=Msa0198620-mRNA-1:cds;Parent=Msa0198620-mRNA-1 |
| chr2_1 | CDS | 17245415 | 17246187 | 17245415 | ID=Msa0198620-mRNA-1:cds;Parent=Msa0198620-mRNA-1 |
| chr2_1 | CDS | 17246277 | 17246668 | 17246277 | ID=Msa0198620-mRNA-1:cds;Parent=Msa0198620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
