AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0724910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724910 MtrunA17_Chr5g0416161 85.676 754 62 6 1 745 1 717 0.0 1164
Msa0724910 MtrunA17_Chr4g0060381 31.489 524 291 19 4 498 2 486 2.34e-41 159
Msa0724910 MtrunA17_Chr4g0060381 50.962 104 49 1 642 745 475 576 3.76e-19 92.0
Msa0724910 MtrunA17_Chr1g0156121 34.559 136 88 1 120 254 124 259 1.05e-13 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724910 AT1G14380.6 31.163 430 227 12 4 406 2 389 5.61e-38 150
Msa0724910 AT1G14380.6 48.148 108 51 3 641 745 489 594 1.80e-17 87.0
Msa0724910 AT1G14380.5 31.163 430 227 12 4 406 2 389 5.61e-38 150
Msa0724910 AT1G14380.5 48.148 108 51 3 641 745 489 594 1.80e-17 87.0
Msa0724910 AT1G14380.2 31.163 430 227 12 4 406 2 389 5.61e-38 150
Msa0724910 AT1G14380.2 48.148 108 51 3 641 745 489 594 1.80e-17 87.0
Msa0724910 AT1G14380.1 32.955 352 187 10 4 345 2 314 5.63e-38 151
Msa0724910 AT1G14380.1 48.148 108 51 3 641 745 551 656 1.55e-17 87.4
Msa0724910 AT1G14380.3 32.955 352 187 10 4 345 2 314 5.63e-38 151
Msa0724910 AT1G14380.3 48.148 108 51 3 641 745 551 656 1.55e-17 87.4
Msa0724910 AT1G14380.4 32.955 352 187 10 4 345 2 314 5.63e-38 151
Msa0724910 AT1G14380.4 48.148 108 51 3 641 745 551 656 1.55e-17 87.4
Msa0724910 AT1G14380.7 32.955 352 187 10 4 345 2 314 1.00e-37 149
Msa0724910 AT1G14380.7 48.148 108 51 3 641 745 461 566 2.06e-17 87.0
Msa0724910 AT1G18840.1 32.507 363 187 10 1 330 1 338 4.87e-36 144
Msa0724910 AT1G18840.3 32.507 363 187 10 1 330 1 338 4.87e-36 144
Msa0724910 AT1G18840.2 32.507 363 187 10 1 330 1 338 4.87e-36 144
Msa0724910 AT1G74690.1 33.427 356 198 13 1 337 1 336 8.73e-33 134
Msa0724910 AT1G74690.1 46.067 89 47 1 658 745 491 579 1.91e-11 67.8
Msa0724910 AT2G02790.2 32.620 374 194 12 1 357 1 333 5.38e-31 129
Msa0724910 AT2G02790.2 51.485 101 48 1 642 741 485 585 5.22e-21 98.2
Msa0724910 AT2G02790.3 32.620 374 194 12 1 357 1 333 5.38e-31 129
Msa0724910 AT2G02790.3 51.485 101 48 1 642 741 485 585 5.22e-21 98.2
Msa0724910 AT2G02790.1 32.620 374 194 12 1 357 1 333 1.26e-30 128
Msa0724910 AT2G02790.1 50.467 107 52 1 642 747 485 591 1.46e-21 100
Msa0724910 AT1G19870.2 33.333 138 82 2 117 254 29 156 1.46e-15 81.3
Msa0724910 AT1G19870.1 33.333 138 82 2 117 254 212 339 1.78e-15 81.3
Msa0724910 AT4G14750.1 31.937 191 101 8 1 184 1 169 1.49e-12 70.5
Msa0724910 AT4G14750.2 31.937 191 101 8 1 184 60 228 4.97e-12 69.3
Msa0724910 AT4G14750.3 31.937 191 101 8 1 184 60 228 5.90e-12 68.9

Find 157 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGTTTCTTCTTCAATTT+TGG 0.139807 5_1:-24035085 None:intergenic
GTTAAGAGATTGTTGGATTA+AGG 0.158523 5_1:-24032041 None:intergenic
GTAACAATGCCGATAGATTT+TGG 0.176558 5_1:-24034232 None:intergenic
TCCAAGACCTTTCTCTTCTT+TGG 0.182427 5_1:-24035773 None:intergenic
TCCAAGACCTTTCTCTTCTT+TGG 0.182427 5_1:-24036001 None:intergenic
CTTTCATGGCAGGTGATTTC+CGG 0.192974 5_1:-24035147 None:intergenic
TCTGAGACCTTTCTCTTCTT+TGG 0.196588 5_1:-24036079 None:intergenic
CTGCCATTCAAGCTCTTCTT+TGG 0.209892 5_1:-24036054 None:intergenic
TCCAAGACTGTTCTCTTCTT+TGG 0.245150 5_1:-24035620 None:intergenic
GGCTTATCGTTGTTCTCTTC+TGG 0.254394 5_1:-24035652 None:intergenic
GTTGGACAAGGTCAAGCTTT+TGG 0.259433 5_1:+24035053 Msa0724910:CDS
AAAGAATCCACAGTTGAAAT+TGG 0.265796 5_1:-24032990 None:intergenic
CTGCCATTTAAGCTCTTCTT+TGG 0.277905 5_1:-24035595 None:intergenic
CCGCCATTTAAGCTCTTCTT+TGG 0.283139 5_1:-24035826 None:intergenic
CAAATATCTGCACCAATATC+TGG 0.285257 5_1:+24033014 Msa0724910:CDS
CCGCCACTTACGCTCTTCTT+TGG 0.286225 5_1:-24035748 None:intergenic
AATGTTAGACGTTCTGATAT+TGG 0.287099 5_1:+24033937 Msa0724910:CDS
TGAGCCCTCATCAGCTTTCA+TGG 0.287560 5_1:-24035161 None:intergenic
TTAAGAGATTGTTGGATTAA+GGG 0.307062 5_1:-24032040 None:intergenic
CCGCCATTTAAGCTCTTCTT+TGG 0.309644 5_1:-24035673 None:intergenic
CCGCCATTTAAGCTCTTCTT+TGG 0.309644 5_1:-24035901 None:intergenic
CCGCCACTTAAGCTCTTCTT+TGG 0.309857 5_1:-24035976 None:intergenic
ATGTTAGACGTTCTGATATT+GGG 0.320597 5_1:+24033938 Msa0724910:CDS
AAGCCAAAGAAGAGCTTAAA+TGG 0.320805 5_1:+24035592 Msa0724910:CDS
AAGCCAAAGAAGAGCTTAAA+TGG 0.320805 5_1:+24035670 Msa0724910:CDS
AAGCCAAAGAAGAGCTTAAA+TGG 0.320805 5_1:+24035898 Msa0724910:CDS
GCAACATTAGCTCCAGATAT+TGG 0.324752 5_1:-24033026 None:intergenic
AAGCCAAAGAAGAGCTTAAA+TGG 0.327940 5_1:+24035823 Msa0724910:CDS
CTGAAAAGGCACAAGTTAAA+AGG 0.331400 5_1:+24035119 Msa0724910:CDS
CAGGCAGTGAAGCTCTTCTT+TGG 0.344810 5_1:-24036336 None:intergenic
GCTGATGAGGGCTCAAGTTC+TGG 0.345997 5_1:+24035169 Msa0724910:CDS
GCCATATAACTCGGCACTCT+TGG 0.374824 5_1:-24036403 None:intergenic
TCCAAGAGTGCCGAGTTATA+TGG 0.386156 5_1:+24036402 Msa0724910:CDS
AAGGTAGGAGATGAAGAAAT+AGG 0.392384 5_1:+24036265 Msa0724910:CDS
AAAGGATTCAAATCACTCAT+TGG 0.395796 5_1:+24035219 Msa0724910:CDS
ATGATATCAGTAGCAAATCT+TGG 0.399401 5_1:-24036469 None:intergenic
TTCTTGCATAACTTCATTGA+AGG 0.402038 5_1:+24033774 Msa0724910:CDS
TGATCTTGGAGAACCTTACT+TGG 0.410168 5_1:+24035012 Msa0724910:CDS
GTCAAAGAAGAGAAAGATCT+TGG 0.414222 5_1:+24035925 Msa0724910:CDS
TTTCATGGCAGGTGATTTCC+GGG 0.416809 5_1:-24035146 None:intergenic
AACTTCATTGAAGGCACATC+GGG 0.421341 5_1:+24033783 Msa0724910:CDS
TCTTCACTTAACAGCAAGTC+AGG 0.421600 5_1:+24036529 Msa0724910:CDS
TGATATCAGTAGCAAATCTT+GGG 0.424517 5_1:-24036468 None:intergenic
GTCAAAGAAGAGAAAGGTCT+TGG 0.427941 5_1:+24035541 Msa0724910:CDS
ATAAATCTCTGTCATCTTCA+AGG 0.431656 5_1:+24036614 Msa0724910:CDS
CTATCGCTAAATAGTGATCT+TGG 0.432037 5_1:+24034998 Msa0724910:CDS
TTCTGTCCAAGACCTTTCTC+AGG 0.432297 5_1:-24035469 None:intergenic
GCCAAAGAAGAGAAAGGTCT+TGG 0.435662 5_1:+24035772 Msa0724910:CDS
GCCAAAGAAGAGAAAGGTCT+TGG 0.435662 5_1:+24036000 Msa0724910:CDS
TCTTGCCCTGAGAAAGGTCT+TGG 0.436010 5_1:+24035463 Msa0724910:CDS
GATGTTTCAGAGCAGGGGCC+AGG 0.436095 5_1:+24035391 Msa0724910:CDS
AAGGAAGAAGTCCTGGGAAA+TGG 0.438773 5_1:+24032661 Msa0724910:CDS
GAAAGCAGTGCTTTCAGAAA+AGG 0.446897 5_1:+24033049 Msa0724910:CDS
TGACTCGGTCTCGGCTGAAA+AGG 0.450561 5_1:+24035105 Msa0724910:CDS
TCACTCATTGGTTTCAGCTC+AGG 0.453397 5_1:+24035231 Msa0724910:CDS
CTTCGAAGTGGCTTGACCGT+TGG 0.453863 5_1:+24035035 Msa0724910:CDS
AGAAAAGAAAACACAGCTCT+AGG 0.454796 5_1:+24035344 Msa0724910:CDS
CTGATAAATTTGAGCGGAAG+AGG 0.454871 5_1:+24036577 Msa0724910:CDS
TTCAAAGAAGAGAAAGATGT+TGG 0.458543 5_1:+24035850 Msa0724910:CDS
TCTCTCAAATGGAGATGAAA+AGG 0.465118 5_1:+24033106 Msa0724910:CDS
CAGACAGAAAGCACTAGAAC+AGG 0.470431 5_1:+24036098 Msa0724910:CDS
GAGAGGGATATTCTCTCAAA+TGG 0.470522 5_1:+24033095 Msa0724910:CDS
CCCTCATCAGCTTTCATGGC+AGG 0.472798 5_1:-24035157 None:intergenic
TTCGAGTAACAAGGATGCAC+TGG 0.473941 5_1:+24032941 Msa0724910:CDS
CTCTGTCATCTTCAAGGGAC+GGG 0.476009 5_1:+24036620 Msa0724910:CDS
ATGGGGAAAGGAAGAAGTCC+TGG 0.479376 5_1:+24032654 Msa0724910:CDS
AGCTCTTATTCGTGGTCACT+TGG 0.479958 5_1:+24033840 Msa0724910:CDS
AAAGCGCAAGAAGAGAATAA+TGG 0.480554 5_1:+24035799 Msa0724910:CDS
AAAGCGCAAGAAGAGAATAA+TGG 0.480554 5_1:+24036027 Msa0724910:CDS
AAGCCAAAGAAGAGCTTGAA+TGG 0.481386 5_1:+24036051 Msa0724910:CDS
TCTTGATCATTAAAATTAGC+AGG 0.485135 5_1:-24036355 None:intergenic
AGATCACTATTTAGCGATAG+AGG 0.485199 5_1:-24034995 None:intergenic
GGGCAAGACTCTTCTGACTT+TGG 0.487465 5_1:-24035448 None:intergenic
AGCCACTTCGAAGCCAAGTA+AGG 0.490411 5_1:-24035025 None:intergenic
GAAGTCCTGGGAAATGGATC+AGG 0.490967 5_1:+24032667 Msa0724910:CDS
GAAGAAACCTGACTCGGTCT+CGG 0.494688 5_1:+24035096 Msa0724910:CDS
TGTTACTGATGTTTCAGAGC+AGG 0.494693 5_1:+24035384 Msa0724910:CDS
AATCAGCAAAAGCTAGGCTA+AGG 0.506190 5_1:+24036434 Msa0724910:CDS
TGGATCAGGAGCTTACTCTC+AGG 0.507002 5_1:+24032681 Msa0724910:CDS
ACGTTCTGATATTGGGCTTG+AGG 0.509685 5_1:+24033945 Msa0724910:CDS
ACCAAAGAAGAGAACAGTCT+TGG 0.521726 5_1:+24035619 Msa0724910:CDS
GAAGAGTCTTGCCCTGAGAA+AGG 0.521918 5_1:+24035457 Msa0724910:CDS
AAGCCAAAGAAGAGCTTAAG+TGG 0.524060 5_1:+24035973 Msa0724910:CDS
TCTTGAGACACTCAGGCTTA+CGG 0.526578 5_1:+24033169 Msa0724910:CDS
GTTACTGATGTTTCAGAGCA+GGG 0.534754 5_1:+24035385 Msa0724910:CDS
CAGCTGCAAGCTCTTATTCG+TGG 0.539642 5_1:+24033832 Msa0724910:CDS
AGATGAAAAGGCTCAGGCAC+CGG 0.542766 5_1:+24033118 Msa0724910:CDS
AAATGGAGATGAAAAGGCTC+AGG 0.543410 5_1:+24033112 Msa0724910:CDS
TAACTCGGCACTCTTGGACT+TGG 0.545077 5_1:-24036397 None:intergenic
ATTGTTGACGTGATGGGGAA+AGG 0.545375 5_1:+24032642 Msa0724910:exon
TTCTGCTTTATATTGTGTGA+AGG 0.546023 5_1:+24033879 Msa0724910:CDS
ACTCAATGTCCAAAATCTAT+CGG 0.549474 5_1:+24034223 Msa0724910:CDS
GAAAAGAAAACACAGCTCTA+GGG 0.549824 5_1:+24035345 Msa0724910:CDS
GAGCTTAAATGGCGGTGTCA+AGG 0.550330 5_1:+24035681 Msa0724910:CDS
GCAGCGATTGTTGACGTGAT+GGG 0.556489 5_1:+24032636 Msa0724910:exon
CGACTGAATCAGCAAAAGCT+AGG 0.556769 5_1:+24036428 Msa0724910:CDS
AATTGTTAAAGTGCAAGCAT+TGG 0.557493 5_1:+24033903 Msa0724910:CDS
TCATCTTCAAGGGACGGGAC+TGG 0.557763 5_1:+24036625 Msa0724910:CDS
AAGCCAAAGAAGAGCGTAAG+TGG 0.558887 5_1:+24035745 Msa0724910:CDS
TAATAAGTCATCACATGAGA+GGG 0.560618 5_1:+24033079 Msa0724910:CDS
ACCTGCCATGAAAGCTGATG+AGG 0.561173 5_1:+24035156 Msa0724910:CDS
GTCTAATCCAATTTCAACTG+TGG 0.561495 5_1:+24032983 Msa0724910:CDS
TCTGCTTTATATTGTGTGAA+GGG 0.562073 5_1:+24033880 Msa0724910:CDS
GGTGGTGTCAAAGAAGAGAA+AGG 0.565727 5_1:+24035535 Msa0724910:CDS
GGAGTTAGCGAAGACTTGAA+TGG 0.567098 5_1:+24036286 Msa0724910:CDS
ATCAGCAAAAGCTAGGCTAA+GGG 0.567639 5_1:+24036435 Msa0724910:CDS
AAAGCTAGGCTAAGGGGACA+AGG 0.569700 5_1:+24036442 Msa0724910:CDS
GAAGAAGAATCCAATGGTGA+AGG 0.571660 5_1:-24032113 None:intergenic
TAAATCTCTGTCATCTTCAA+GGG 0.577185 5_1:+24036615 Msa0724910:CDS
GGCAGTGCCAAAGAAGAGAA+AGG 0.578082 5_1:+24036072 Msa0724910:CDS
AAGATGATCTTGAGACACTC+AGG 0.580261 5_1:+24033162 Msa0724910:CDS
CCTGCCATGAAAGCTGATGA+GGG 0.583675 5_1:+24035157 Msa0724910:CDS
CAGCGATTGTTGACGTGATG+GGG 0.586351 5_1:+24032637 Msa0724910:exon
GGATCAGGAGCTTACTCTCA+GGG 0.586360 5_1:+24032682 Msa0724910:CDS
TCTGTCCAAGACCTTTCTCA+GGG 0.589944 5_1:-24035468 None:intergenic
AAGCTCCTGATCCATTTCCC+AGG 0.592908 5_1:-24032672 None:intergenic
AACCTTACTTGGCTTCGAAG+TGG 0.602005 5_1:+24035023 Msa0724910:CDS
CACAAGTTAAAAGGACTACC+CGG 0.602610 5_1:+24035128 Msa0724910:CDS
GGCGGTGCCAAAGAAGAGAA+AGG 0.603794 5_1:+24035766 Msa0724910:CDS
GGCGGTGCCAAAGAAGAGAA+AGG 0.603794 5_1:+24035994 Msa0724910:CDS
AGATGAAAGTGAATGCCTCC+TGG 0.603995 5_1:-24036509 None:intergenic
TTAATAAGTCATCACATGAG+AGG 0.605684 5_1:+24033078 Msa0724910:CDS
TAACTTCATTGAAGGCACAT+CGG 0.609546 5_1:+24033782 Msa0724910:CDS
AGCAGCGATTGTTGACGTGA+TGG 0.609674 5_1:+24032635 Msa0724910:exon
TCTCTGTCATCTTCAAGGGA+CGG 0.611971 5_1:+24036619 Msa0724910:CDS
AAAAGCTTGACCTTGTCCAA+CGG 0.615531 5_1:-24035051 None:intergenic
AGTGGCTTGACCGTTGGACA+AGG 0.615551 5_1:+24035041 Msa0724910:CDS
GATGCAACATTAGCAACGGC+CGG 0.617861 5_1:-24033137 None:intergenic
TCGAGTAACAAGGATGCACT+GGG 0.618488 5_1:+24032942 Msa0724910:CDS
TTACTGATGTTTCAGAGCAG+GGG 0.623308 5_1:+24035386 Msa0724910:CDS
TGAGGTCCTGAAAGTTCGCA+AGG 0.629107 5_1:+24033963 Msa0724910:CDS
TTAGCGATAGAGGAAACGCA+TGG 0.630241 5_1:-24034985 None:intergenic
ATCAGGAGCTTACTCTCAGG+GGG 0.630920 5_1:+24032684 Msa0724910:CDS
TGAGCGGAAGAGGAGTTGCA+AGG 0.632349 5_1:+24036587 Msa0724910:CDS
GTAGAAATCTTCGAGTAACA+AGG 0.636686 5_1:+24032932 Msa0724910:intron
GAAGAGGAAGAAGAATCCAA+TGG 0.637357 5_1:-24032119 None:intergenic
AAAGTGCAAGCATTGGCTCG+TGG 0.637631 5_1:+24033910 Msa0724910:CDS
TTGAGATGCAACATTAGCAA+CGG 0.640449 5_1:-24033141 None:intergenic
TCAGCAAAAGCTAGGCTAAG+GGG 0.647323 5_1:+24036436 Msa0724910:CDS
AGTTCCTACCTGGTGAACAA+AGG 0.648285 5_1:-24034287 None:intergenic
TGGGGAAAGGAAGAAGTCCT+GGG 0.653494 5_1:+24032655 Msa0724910:CDS
ATTGAAGAAGAAACCTGACT+CGG 0.655945 5_1:+24035090 Msa0724910:CDS
TCAGTCGGAGCCATATAACT+CGG 0.661998 5_1:-24036412 None:intergenic
GATATCAGTAGCAAATCTTG+GGG 0.666334 5_1:-24036467 None:intergenic
CGGCATTGTTACATCTACAC+CGG 0.669148 5_1:+24034243 Msa0724910:CDS
GAAAAGCTGATAAATTTGAG+CGG 0.671178 5_1:+24036571 Msa0724910:CDS
CAGAAAGCACTAGAACAGGA+AGG 0.674738 5_1:+24036102 Msa0724910:CDS
TAGCGATAGAGGAAACGCAT+GGG 0.677774 5_1:-24034984 None:intergenic
TGAGAAAATGAAAGAAACGA+CGG 0.688170 5_1:+24035423 Msa0724910:CDS
CCAAAGAAGAGCGTAAGTGG+CGG 0.702919 5_1:+24035748 Msa0724910:CDS
GATCAGGAGCTTACTCTCAG+GGG 0.703576 5_1:+24032683 Msa0724910:CDS
CCAAAGAAGAGCTTAAGTGG+CGG 0.710668 5_1:+24035976 Msa0724910:CDS
CCAAAGAAGAGCTTAAATGG+CGG 0.712376 5_1:+24035826 Msa0724910:CDS
GTTAGCGAAGACTTGAATGG+CGG 0.720405 5_1:+24036289 Msa0724910:CDS
CCAAAGAAGAGCTTAAATGG+CGG 0.731508 5_1:+24035673 Msa0724910:CDS
CCAAAGAAGAGCTTAAATGG+CGG 0.731508 5_1:+24035901 Msa0724910:CDS
TCAGGAGCTTACTCTCAGGG+GGG 0.780339 5_1:+24032685 Msa0724910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTTATCATCTATAT+CGG - chr5_1:24034332-24034351 None:intergenic 10.0%
!!! AAATAATAATAGATTGTTTT+AGG + chr5_1:24034343-24034362 Msa0724910:intron 10.0%
!!! TATTGTTTAATTTAGTAATG+AGG + chr5_1:24032337-24032356 Msa0724910:intron 15.0%
!! AAATGGGTATATATAATATT+AGG + chr5_1:24032468-24032487 Msa0724910:intron 15.0%
!!! TGTTATGTAAATTTTATAGT+TGG + chr5_1:24032519-24032538 Msa0724910:intron 15.0%
!! AATAAATGGTATATAATTGA+TGG + chr5_1:24032559-24032578 Msa0724910:intron 15.0%
!!! AATGTTATAATTGTTACTTA+TGG + chr5_1:24032849-24032868 Msa0724910:intron 15.0%
!!! ATGTTATAATTGTTACTTAT+GGG + chr5_1:24032850-24032869 Msa0724910:intron 15.0%
!!! ATATATTTTGTCAAAAATTG+CGG + chr5_1:24033639-24033658 Msa0724910:intron 15.0%
!! AGTATTAATTGAATTAAAGA+AGG + chr5_1:24034495-24034514 Msa0724910:intron 15.0%
!!! AATTTTATATTCGATATGAA+TGG + chr5_1:24034811-24034830 Msa0724910:intron 15.0%
!!! TGAATTTTTCAATTTCTTCA+TGG + chr5_1:24032368-24032387 Msa0724910:intron 20.0%
!!! TTATTAGTCTTACATGAAAA+TGG + chr5_1:24032425-24032444 Msa0724910:intron 20.0%
!!! TATTAGTCTTACATGAAAAT+GGG + chr5_1:24032426-24032445 Msa0724910:intron 20.0%
!!! ATTTTCTACTTGTTTGAAAA+TGG + chr5_1:24032451-24032470 Msa0724910:intron 20.0%
!!! TTTTCTACTTGTTTGAAAAT+GGG + chr5_1:24032452-24032471 Msa0724910:intron 20.0%
!! TCTGATTTACTTTGAATAAA+TGG + chr5_1:24032545-24032564 Msa0724910:intron 20.0%
!! TGTTATAAGGAAACTATTAA+AGG + chr5_1:24032820-24032839 Msa0724910:intron 20.0%
!!! TGTTATAATTGTTACTTATG+GGG + chr5_1:24032851-24032870 Msa0724910:intron 20.0%
!! AACAGAAATGTAAAATTACA+GGG - chr5_1:24033245-24033264 None:intergenic 20.0%
!! TAACAGAAATGTAAAATTAC+AGG - chr5_1:24033246-24033265 None:intergenic 20.0%
!!! AATTTTACATTTCTGTTATG+CGG + chr5_1:24033248-24033267 Msa0724910:intron 20.0%
!! AAATAAAAGTGAAATAGATG+TGG - chr5_1:24033523-24033542 None:intergenic 20.0%
!!! TTTTGTTTCTGCAATTTTAT+TGG + chr5_1:24033598-24033617 Msa0724910:intron 20.0%
!! GTTTCTTTATGTATGATTAA+TGG + chr5_1:24033731-24033750 Msa0724910:intron 20.0%
!! TTAGTCATATTTCAGATATT+AGG - chr5_1:24034373-24034392 None:intergenic 20.0%
!!! GTTGATAATTTTATTGTTCA+TGG + chr5_1:24034429-24034448 Msa0724910:intron 20.0%
!!! ATAATTTTATTGTTCATGGA+AGG + chr5_1:24034433-24034452 Msa0724910:intron 20.0%
!! TATATAACAAAGACAAATTC+AGG - chr5_1:24034558-24034577 None:intergenic 20.0%
!! GAAATTATATGAAGAAACTT+CGG - chr5_1:24034680-24034699 None:intergenic 20.0%
!! TCTTCATATAATTTCAGTTA+AGG + chr5_1:24034685-24034704 Msa0724910:intron 20.0%
!!! GTTTTGAAATTAAATTGTCT+TGG + chr5_1:24034897-24034916 Msa0724910:intron 20.0%
!!! TTTTCTCAATTTCTTTCTTT+GGG - chr5_1:24035267-24035286 None:intergenic 20.0%
! TTAAGAGATTGTTGGATTAA+GGG - chr5_1:24032043-24032062 None:intergenic 25.0%
! AGAAAAAGTTAAGAGATTGT+TGG - chr5_1:24032051-24032070 None:intergenic 25.0%
! AACATGTAACATTTCTACAT+AGG - chr5_1:24032401-24032420 None:intergenic 25.0%
!!! TATTTTTGTAAGTGTTTTCG+TGG + chr5_1:24032749-24032768 Msa0724910:intron 25.0%
! TAATAGTTTCCTTATAACAG+AGG - chr5_1:24032819-24032838 None:intergenic 25.0%
!!! AGTACTTTGAATTCTGAAAT+AGG + chr5_1:24032878-24032897 Msa0724910:intron 25.0%
! ACAGAAATGTAAAATTACAG+GGG - chr5_1:24033244-24033263 None:intergenic 25.0%
!! ATTTTACATTTCTGTTATGC+GGG + chr5_1:24033249-24033268 Msa0724910:intron 25.0%
!!! TCTTAGTATTGGTACTTTAT+TGG + chr5_1:24033705-24033724 Msa0724910:intron 25.0%
!! ATCAACTGATAACATTTTCA+TGG - chr5_1:24034415-24034434 None:intergenic 25.0%
! TTAATACTACTAGTGTTTAC+CGG - chr5_1:24034483-24034502 None:intergenic 25.0%
!! TGTTAAGTGAAAAGTTGTTT+TGG + chr5_1:24034718-24034737 Msa0724910:intron 25.0%
! CAACTTAAAATCATAACATG+AGG - chr5_1:24034760-24034779 None:intergenic 25.0%
! ATGAATGGTATAACAAAGTT+TGG + chr5_1:24034826-24034845 Msa0724910:intron 25.0%
!! CTTTTCTCAATTTCTTTCTT+TGG - chr5_1:24035268-24035287 None:intergenic 25.0%
! TCTTGATCATTAAAATTAGC+AGG - chr5_1:24036358-24036377 None:intergenic 25.0%
GTTAAGAGATTGTTGGATTA+AGG - chr5_1:24032044-24032063 None:intergenic 30.0%
!!! TTCTTCCTCTTCATTTTTTC+AGG + chr5_1:24032130-24032149 Msa0724910:five_prime_UTR 30.0%
ACCCTAGATGTAAAAAAATG+CGG - chr5_1:24032161-24032180 None:intergenic 30.0%
! AACTATATGTAGTTGACTCT+TGG + chr5_1:24032254-24032273 Msa0724910:intron 30.0%
AAAGAATCCACAGTTGAAAT+TGG - chr5_1:24032993-24033012 None:intergenic 30.0%
TTAATAAGTCATCACATGAG+AGG + chr5_1:24033078-24033097 Msa0724910:CDS 30.0%
TAATAAGTCATCACATGAGA+GGG + chr5_1:24033079-24033098 Msa0724910:CDS 30.0%
TAAACGAAATTTGCAGTTGT+AGG + chr5_1:24033543-24033562 Msa0724910:intron 30.0%
CATGCAATTTGTCTTAGTAT+TGG + chr5_1:24033694-24033713 Msa0724910:intron 30.0%
TTCTTGCATAACTTCATTGA+AGG + chr5_1:24033774-24033793 Msa0724910:CDS 30.0%
TTCTGCTTTATATTGTGTGA+AGG + chr5_1:24033879-24033898 Msa0724910:CDS 30.0%
TCTGCTTTATATTGTGTGAA+GGG + chr5_1:24033880-24033899 Msa0724910:CDS 30.0%
AATTGTTAAAGTGCAAGCAT+TGG + chr5_1:24033903-24033922 Msa0724910:CDS 30.0%
AATGTTAGACGTTCTGATAT+TGG + chr5_1:24033937-24033956 Msa0724910:CDS 30.0%
ATGTTAGACGTTCTGATATT+GGG + chr5_1:24033938-24033957 Msa0724910:CDS 30.0%
CAATGTACAAATCATTGCAT+TGG - chr5_1:24034012-24034031 None:intergenic 30.0%
AATTTCTCAGTGGAAATGTT+AGG + chr5_1:24034041-24034060 Msa0724910:intron 30.0%
! GTACATTCTTTTTGTATGAC+AGG - chr5_1:24034097-24034116 None:intergenic 30.0%
TAGTTAGTGAAGCAATACAA+GGG - chr5_1:24034180-24034199 None:intergenic 30.0%
!! TACTTCAATCTACTTTTCTC+AGG + chr5_1:24034198-24034217 Msa0724910:intron 30.0%
ACTCAATGTCCAAAATCTAT+CGG + chr5_1:24034223-24034242 Msa0724910:CDS 30.0%
ATTAATTAGAAGTTCCTACC+TGG - chr5_1:24034300-24034319 None:intergenic 30.0%
TTACCGGGAGAAAAAAAAAA+GGG - chr5_1:24034467-24034486 None:intergenic 30.0%
TTTACCGGGAGAAAAAAAAA+AGG - chr5_1:24034468-24034487 None:intergenic 30.0%
TAATACTACTAGTGTTTACC+GGG - chr5_1:24034482-24034501 None:intergenic 30.0%
AATCATAACATGAGGTTGAA+TGG - chr5_1:24034752-24034771 None:intergenic 30.0%
!!! GCTGATTTTTTTTTTCCCTA+TGG + chr5_1:24034853-24034872 Msa0724910:intron 30.0%
!!! TTTTTTTCCCTATGGTTGTT+TGG + chr5_1:24034861-24034880 Msa0724910:intron 30.0%
AACTAAACCAAACAACCATA+GGG - chr5_1:24034871-24034890 None:intergenic 30.0%
AAACTAAACCAAACAACCAT+AGG - chr5_1:24034872-24034891 None:intergenic 30.0%
!! TTCTTCTTCAATTTTGGAAG+AGG - chr5_1:24035082-24035101 None:intergenic 30.0%
! TCAGGTTTCTTCTTCAATTT+TGG - chr5_1:24035088-24035107 None:intergenic 30.0%
ACAAAAACAACGTCCAAAAA+AGG + chr5_1:24035201-24035220 Msa0724910:CDS 30.0%
!!! GAGTGATTTGAATCCTTTTT+TGG - chr5_1:24035217-24035236 None:intergenic 30.0%
AAAGGATTCAAATCACTCAT+TGG + chr5_1:24035219-24035238 Msa0724910:CDS 30.0%
! TTCTTTCATTTTCTCAGAAG+AGG - chr5_1:24035419-24035438 None:intergenic 30.0%
TGAGAAAATGAAAGAAACGA+CGG + chr5_1:24035423-24035442 Msa0724910:CDS 30.0%
TTCAAAGAAGAGAAAGATGT+TGG + chr5_1:24035850-24035869 Msa0724910:CDS 30.0%
TGATATCAGTAGCAAATCTT+GGG - chr5_1:24036471-24036490 None:intergenic 30.0%
ATGATATCAGTAGCAAATCT+TGG - chr5_1:24036472-24036491 None:intergenic 30.0%
TAGACAAAAACAGTTTAACC+AGG + chr5_1:24036491-24036510 Msa0724910:CDS 30.0%
! TTATCAGCTTTTCTACTCTT+GGG - chr5_1:24036564-24036583 None:intergenic 30.0%
! TTTATCAGCTTTTCTACTCT+TGG - chr5_1:24036565-24036584 None:intergenic 30.0%
GAAAAGCTGATAAATTTGAG+CGG + chr5_1:24036571-24036590 Msa0724910:CDS 30.0%
ATAAATCTCTGTCATCTTCA+AGG + chr5_1:24036614-24036633 Msa0724910:CDS 30.0%
TAAATCTCTGTCATCTTCAA+GGG + chr5_1:24036615-24036634 Msa0724910:CDS 30.0%
! TCTTTTCATTCCTTCACCAT+TGG + chr5_1:24032103-24032122 Msa0724910:five_prime_UTR 35.0%
CAGAACCTGAAAAAATGAAG+AGG - chr5_1:24032138-24032157 None:intergenic 35.0%
!!! TGCCGCATTTTTTTACATCT+AGG + chr5_1:24032156-24032175 Msa0724910:intron 35.0%
!!! GCCGCATTTTTTTACATCTA+GGG + chr5_1:24032157-24032176 Msa0724910:intron 35.0%
TAATTGCTGCCTCTGTTATA+AGG + chr5_1:24032807-24032826 Msa0724910:intron 35.0%
AAGATTTCTACATGCACGAA+TGG - chr5_1:24032923-24032942 None:intergenic 35.0%
GTAGAAATCTTCGAGTAACA+AGG + chr5_1:24032932-24032951 Msa0724910:intron 35.0%
GTCTAATCCAATTTCAACTG+TGG + chr5_1:24032983-24033002 Msa0724910:CDS 35.0%
CAAATATCTGCACCAATATC+TGG + chr5_1:24033014-24033033 Msa0724910:CDS 35.0%
TCTCTCAAATGGAGATGAAA+AGG + chr5_1:24033106-24033125 Msa0724910:CDS 35.0%
TTGAGATGCAACATTAGCAA+CGG - chr5_1:24033144-24033163 None:intergenic 35.0%
TTGTCAAATAGCAGCTATAG+CGG - chr5_1:24033334-24033353 None:intergenic 35.0%
TGAAATAGATGTGGTTGCAT+TGG - chr5_1:24033514-24033533 None:intergenic 35.0%
CTAAGACAAATTGCATGTGA+TGG - chr5_1:24033691-24033710 None:intergenic 35.0%
! TAACTTCATTGAAGGCACAT+CGG + chr5_1:24033782-24033801 Msa0724910:CDS 35.0%
TTCGCAAGGTAAAAGTTCTT+TGG + chr5_1:24033977-24033996 Msa0724910:intron 35.0%
GTATGACAGGAAAGATCTAT+TGG - chr5_1:24034084-24034103 None:intergenic 35.0%
GTAGTTAGTGAAGCAATACA+AGG - chr5_1:24034181-24034200 None:intergenic 35.0%
! GTAACAATGCCGATAGATTT+TGG - chr5_1:24034235-24034254 None:intergenic 35.0%
AAAAAATGCCTTTGTTCACC+AGG + chr5_1:24034279-24034298 Msa0724910:CDS 35.0%
TACCGGGAGAAAAAAAAAAG+GGG - chr5_1:24034466-24034485 None:intergenic 35.0%
CAGCTGAAATGGATATCATA+TGG - chr5_1:24034951-24034970 None:intergenic 35.0%
AGATCACTATTTAGCGATAG+AGG - chr5_1:24034998-24035017 None:intergenic 35.0%
CTATCGCTAAATAGTGATCT+TGG + chr5_1:24034998-24035017 Msa0724910:CDS 35.0%
ATTGAAGAAGAAACCTGACT+CGG + chr5_1:24035090-24035109 Msa0724910:CDS 35.0%
! CTGAAAAGGCACAAGTTAAA+AGG + chr5_1:24035119-24035138 Msa0724910:CDS 35.0%
AGAAAAGAAAACACAGCTCT+AGG + chr5_1:24035344-24035363 Msa0724910:CDS 35.0%
GAAAAGAAAACACAGCTCTA+GGG + chr5_1:24035345-24035364 Msa0724910:CDS 35.0%
AAGCCAAAAAAGAGCTCAAA+TGG + chr5_1:24035514-24035533 Msa0724910:CDS 35.0%
AAGCCAAAGAAGAGCTTAAA+TGG + chr5_1:24035592-24035611 Msa0724910:CDS 35.0%
! TTGTTCTCTTCTGGTGTTTT+CGG - chr5_1:24035646-24035665 None:intergenic 35.0%
AAGCCAAAGAAGAGCTTAAA+TGG + chr5_1:24035592-24035611 Msa0724910:CDS 35.0%
GTCAAGGAAGAGAAAAATCT+TGG + chr5_1:24035697-24035716 Msa0724910:CDS 35.0%
AAAGCGCAAGAAGAGAATAA+TGG + chr5_1:24035799-24035818 Msa0724910:CDS 35.0%
AAGCCAAAGAAGAGCTTAAA+TGG + chr5_1:24035592-24035611 Msa0724910:CDS 35.0%
AAGCCAAAGAAGAGCTTAAA+TGG + chr5_1:24035592-24035611 Msa0724910:CDS 35.0%
GTCAAAGAAGAGAAAGATCT+TGG + chr5_1:24035925-24035944 Msa0724910:CDS 35.0%
AAAGCGCAAGAAGAGAATAA+TGG + chr5_1:24035799-24035818 Msa0724910:CDS 35.0%
AAGGTAGGAGATGAAGAAAT+AGG + chr5_1:24036265-24036284 Msa0724910:CDS 35.0%
GATATCAGTAGCAAATCTTG+GGG - chr5_1:24036470-24036489 None:intergenic 35.0%
ACAAAAACAGTTTAACCAGG+AGG + chr5_1:24036494-24036513 Msa0724910:CDS 35.0%
! TATCAGCTTTTCTACTCTTG+GGG - chr5_1:24036563-24036582 None:intergenic 35.0%
GAAGAAGAATCCAATGGTGA+AGG - chr5_1:24032116-24032135 None:intergenic 40.0%
GAAGAGGAAGAAGAATCCAA+TGG - chr5_1:24032122-24032141 None:intergenic 40.0%
GCAACATTAGCTCCAGATAT+TGG - chr5_1:24033029-24033048 None:intergenic 40.0%
GAAAGCAGTGCTTTCAGAAA+AGG + chr5_1:24033049-24033068 Msa0724910:CDS 40.0%
GAGAGGGATATTCTCTCAAA+TGG + chr5_1:24033095-24033114 Msa0724910:CDS 40.0%
AAATGGAGATGAAAAGGCTC+AGG + chr5_1:24033112-24033131 Msa0724910:CDS 40.0%
AAGATGATCTTGAGACACTC+AGG + chr5_1:24033162-24033181 Msa0724910:CDS 40.0%
TTGTACTAAACAGCGTATCG+CGG + chr5_1:24033358-24033377 Msa0724910:intron 40.0%
! AACTTCATTGAAGGCACATC+GGG + chr5_1:24033783-24033802 Msa0724910:CDS 40.0%
! CTTTTACCTTGCGAACTTTC+AGG - chr5_1:24033972-24033991 None:intergenic 40.0%
GTTCTCTCTGAATTTCTCAG+TGG + chr5_1:24034031-24034050 Msa0724910:intron 40.0%
GACTCATAGAACATACTCTG+CGG + chr5_1:24034121-24034140 Msa0724910:intron 40.0%
AGTGAAGCAATACAAGGGTA+TGG - chr5_1:24034175-24034194 None:intergenic 40.0%
!!! TTTTTTGACAGCTTGTCTGC+CGG - chr5_1:24034265-24034284 None:intergenic 40.0%
!!! TCCCCCTTTTTTTTTTCTCC+CGG + chr5_1:24034461-24034480 Msa0724910:intron 40.0%
ACCGGGAGAAAAAAAAAAGG+GGG - chr5_1:24034465-24034484 None:intergenic 40.0%
ATGATATCCATTTCAGCTGC+TGG + chr5_1:24034952-24034971 Msa0724910:intron 40.0%
TGATCTTGGAGAACCTTACT+TGG + chr5_1:24035012-24035031 Msa0724910:CDS 40.0%
AAAAGCTTGACCTTGTCCAA+CGG - chr5_1:24035054-24035073 None:intergenic 40.0%
! TTGGACAAGGTCAAGCTTTT+GGG + chr5_1:24035054-24035073 Msa0724910:CDS 40.0%
CACAAGTTAAAAGGACTACC+CGG + chr5_1:24035128-24035147 Msa0724910:CDS 40.0%
TGTTACTGATGTTTCAGAGC+AGG + chr5_1:24035384-24035403 Msa0724910:CDS 40.0%
GTTACTGATGTTTCAGAGCA+GGG + chr5_1:24035385-24035404 Msa0724910:CDS 40.0%
TTACTGATGTTTCAGAGCAG+GGG + chr5_1:24035386-24035405 Msa0724910:CDS 40.0%
! ATTTTCTCAGAAGAGGAACC+TGG - chr5_1:24035412-24035431 None:intergenic 40.0%
!!! CCACCATTTGAGCTCTTTTT+TGG - chr5_1:24035520-24035539 None:intergenic 40.0%
CCAAAAAAGAGCTCAAATGG+TGG + chr5_1:24035517-24035536 Msa0724910:CDS 40.0%
GTCAAAGAAGAGAAAGGTCT+TGG + chr5_1:24035541-24035560 Msa0724910:CDS 40.0%
! CTGCCATTTAAGCTCTTCTT+TGG - chr5_1:24035598-24035617 None:intergenic 40.0%
ACCAAAGAAGAGAACAGTCT+TGG + chr5_1:24035619-24035638 Msa0724910:CDS 40.0%
TCCAAGACTGTTCTCTTCTT+TGG - chr5_1:24035623-24035642 None:intergenic 40.0%
CCAAAGAAGAGCTTAAATGG+CGG + chr5_1:24035595-24035614 Msa0724910:CDS 40.0%
TCCAAGACCTTTCTCTTCTT+TGG - chr5_1:24035545-24035564 None:intergenic 40.0%
CCAAAGAAGAGCTTAAATGG+CGG + chr5_1:24035595-24035614 Msa0724910:CDS 40.0%
CCAAAGAAGAGCTTAAATGG+CGG + chr5_1:24035595-24035614 Msa0724910:CDS 40.0%
AAGCCAAAGAAGAGCTTAAG+TGG + chr5_1:24035973-24035992 Msa0724910:CDS 40.0%
TCCAAGACCTTTCTCTTCTT+TGG - chr5_1:24035545-24035564 None:intergenic 40.0%
AAGCCAAAGAAGAGCTTGAA+TGG + chr5_1:24036051-24036070 Msa0724910:CDS 40.0%
! TCTGAGACCTTTCTCTTCTT+TGG - chr5_1:24036082-24036101 None:intergenic 40.0%
!!! CTAGCTTTTGCTGATTCAGT+CGG - chr5_1:24036430-24036449 None:intergenic 40.0%
AATCAGCAAAAGCTAGGCTA+AGG + chr5_1:24036434-24036453 Msa0724910:CDS 40.0%
ATCAGCAAAAGCTAGGCTAA+GGG + chr5_1:24036435-24036454 Msa0724910:CDS 40.0%
TCTTCACTTAACAGCAAGTC+AGG + chr5_1:24036529-24036548 Msa0724910:CDS 40.0%
CTGATAAATTTGAGCGGAAG+AGG + chr5_1:24036577-24036596 Msa0724910:CDS 40.0%
! ATTGTTGACGTGATGGGGAA+AGG + chr5_1:24032642-24032661 Msa0724910:exon 45.0%
AAGGAAGAAGTCCTGGGAAA+TGG + chr5_1:24032661-24032680 Msa0724910:CDS 45.0%
TTCGAGTAACAAGGATGCAC+TGG + chr5_1:24032941-24032960 Msa0724910:CDS 45.0%
TCGAGTAACAAGGATGCACT+GGG + chr5_1:24032942-24032961 Msa0724910:CDS 45.0%
TCTTGAGACACTCAGGCTTA+CGG + chr5_1:24033169-24033188 Msa0724910:CDS 45.0%
AAACTTCAGTCTGCTTGCAG+AGG + chr5_1:24033203-24033222 Msa0724910:intron 45.0%
TAAACAGCGCAATAGCGTAG+CGG - chr5_1:24033407-24033426 None:intergenic 45.0%
AGCTCTTATTCGTGGTCACT+TGG + chr5_1:24033840-24033859 Msa0724910:CDS 45.0%
ACGTTCTGATATTGGGCTTG+AGG + chr5_1:24033945-24033964 Msa0724910:CDS 45.0%
CGGCATTGTTACATCTACAC+CGG + chr5_1:24034243-24034262 Msa0724910:CDS 45.0%
AATGCCTTTGTTCACCAGGT+AGG + chr5_1:24034283-24034302 Msa0724910:intron 45.0%
AGTTCCTACCTGGTGAACAA+AGG - chr5_1:24034290-24034309 None:intergenic 45.0%
GGGAGAAAAAAAAAAGGGGG+AGG - chr5_1:24034462-24034481 None:intergenic 45.0%
!! TCACTCTCGACTCGACTTTT+AGG + chr5_1:24034530-24034549 Msa0724910:intron 45.0%
!! CACTCTCGACTCGACTTTTA+GGG + chr5_1:24034531-24034550 Msa0724910:intron 45.0%
AGAAACTTCGGACTCAGTTG+AGG - chr5_1:24034668-24034687 None:intergenic 45.0%
TAGCGATAGAGGAAACGCAT+GGG - chr5_1:24034987-24035006 None:intergenic 45.0%
TTAGCGATAGAGGAAACGCA+TGG - chr5_1:24034988-24035007 None:intergenic 45.0%
AACCTTACTTGGCTTCGAAG+TGG + chr5_1:24035023-24035042 Msa0724910:CDS 45.0%
! GTTGGACAAGGTCAAGCTTT+TGG + chr5_1:24035053-24035072 Msa0724910:CDS 45.0%
TTTCATGGCAGGTGATTTCC+GGG - chr5_1:24035149-24035168 None:intergenic 45.0%
CTTTCATGGCAGGTGATTTC+CGG - chr5_1:24035150-24035169 None:intergenic 45.0%
!! TCACTCATTGGTTTCAGCTC+AGG + chr5_1:24035231-24035250 Msa0724910:CDS 45.0%
TCTGTCCAAGACCTTTCTCA+GGG - chr5_1:24035471-24035490 None:intergenic 45.0%
TTCTGTCCAAGACCTTTCTC+AGG - chr5_1:24035472-24035491 None:intergenic 45.0%
! GGTGGTGTCAAAGAAGAGAA+AGG + chr5_1:24035535-24035554 Msa0724910:CDS 45.0%
GGCTTATCGTTGTTCTCTTC+TGG - chr5_1:24035655-24035674 None:intergenic 45.0%
CCGCCATTTAAGCTCTTCTT+TGG - chr5_1:24035676-24035695 None:intergenic 45.0%
! AAGCCAAAGAAGAGCGTAAG+TGG + chr5_1:24035745-24035764 Msa0724910:CDS 45.0%
GCCAAAGAAGAGAAAGGTCT+TGG + chr5_1:24035772-24035791 Msa0724910:CDS 45.0%
CCGCCATTTAAGCTCTTCTT+TGG - chr5_1:24035676-24035695 None:intergenic 45.0%
CCGCCATTTAAGCTCTTCTT+TGG - chr5_1:24035676-24035695 None:intergenic 45.0%
CCAAAGAAGAGCTTAAGTGG+CGG + chr5_1:24035976-24035995 Msa0724910:CDS 45.0%
GCCAAAGAAGAGAAAGGTCT+TGG + chr5_1:24035772-24035791 Msa0724910:CDS 45.0%
CTGCCATTCAAGCTCTTCTT+TGG - chr5_1:24036057-24036076 None:intergenic 45.0%
!! CAGACAGAAAGCACTAGAAC+AGG + chr5_1:24036098-24036117 Msa0724910:CDS 45.0%
!! CAGAAAGCACTAGAACAGGA+AGG + chr5_1:24036102-24036121 Msa0724910:CDS 45.0%
GGAGTTAGCGAAGACTTGAA+TGG + chr5_1:24036286-24036305 Msa0724910:CDS 45.0%
GTTAGCGAAGACTTGAATGG+CGG + chr5_1:24036289-24036308 Msa0724910:CDS 45.0%
!! TCCAAGAGTGCCGAGTTATA+TGG + chr5_1:24036402-24036421 Msa0724910:CDS 45.0%
TCAGTCGGAGCCATATAACT+CGG - chr5_1:24036415-24036434 None:intergenic 45.0%
CGACTGAATCAGCAAAAGCT+AGG + chr5_1:24036428-24036447 Msa0724910:CDS 45.0%
TCAGCAAAAGCTAGGCTAAG+GGG + chr5_1:24036436-24036455 Msa0724910:CDS 45.0%
AGATGAAAGTGAATGCCTCC+TGG - chr5_1:24036512-24036531 None:intergenic 45.0%
TCTCTGTCATCTTCAAGGGA+CGG + chr5_1:24036619-24036638 Msa0724910:CDS 45.0%
AGCAGCGATTGTTGACGTGA+TGG + chr5_1:24032635-24032654 Msa0724910:exon 50.0%
GCAGCGATTGTTGACGTGAT+GGG + chr5_1:24032636-24032655 Msa0724910:exon 50.0%
CAGCGATTGTTGACGTGATG+GGG + chr5_1:24032637-24032656 Msa0724910:exon 50.0%
ATGGGGAAAGGAAGAAGTCC+TGG + chr5_1:24032654-24032673 Msa0724910:CDS 50.0%
TGGGGAAAGGAAGAAGTCCT+GGG + chr5_1:24032655-24032674 Msa0724910:CDS 50.0%
GAAGTCCTGGGAAATGGATC+AGG + chr5_1:24032667-24032686 Msa0724910:CDS 50.0%
AAGCTCCTGATCCATTTCCC+AGG - chr5_1:24032675-24032694 None:intergenic 50.0%
TGGATCAGGAGCTTACTCTC+AGG + chr5_1:24032681-24032700 Msa0724910:CDS 50.0%
GGATCAGGAGCTTACTCTCA+GGG + chr5_1:24032682-24032701 Msa0724910:CDS 50.0%
GATCAGGAGCTTACTCTCAG+GGG + chr5_1:24032683-24032702 Msa0724910:CDS 50.0%
ATCAGGAGCTTACTCTCAGG+GGG + chr5_1:24032684-24032703 Msa0724910:CDS 50.0%
AGATGAAAAGGCTCAGGCAC+CGG + chr5_1:24033118-24033137 Msa0724910:CDS 50.0%
GATGCAACATTAGCAACGGC+CGG - chr5_1:24033140-24033159 None:intergenic 50.0%
! TATGCGGGCTGATATGCTTC+TGG + chr5_1:24033264-24033283 Msa0724910:intron 50.0%
CAGCTGCAAGCTCTTATTCG+TGG + chr5_1:24033832-24033851 Msa0724910:CDS 50.0%
!! AAAGTGCAAGCATTGGCTCG+TGG + chr5_1:24033910-24033929 Msa0724910:CDS 50.0%
TGAGGTCCTGAAAGTTCGCA+AGG + chr5_1:24033963-24033982 Msa0724910:CDS 50.0%
TAGAACATACTCTGCGGCGT+AGG + chr5_1:24034127-24034146 Msa0724910:intron 50.0%
GATGAAGCCAGCAGCTGAAA+TGG - chr5_1:24034962-24034981 None:intergenic 50.0%
AGCCACTTCGAAGCCAAGTA+AGG - chr5_1:24035028-24035047 None:intergenic 50.0%
!! GAAGAAACCTGACTCGGTCT+CGG + chr5_1:24035096-24035115 Msa0724910:CDS 50.0%
ACCTGCCATGAAAGCTGATG+AGG + chr5_1:24035156-24035175 Msa0724910:CDS 50.0%
CCTGCCATGAAAGCTGATGA+GGG + chr5_1:24035157-24035176 Msa0724910:CDS 50.0%
TGAGCCCTCATCAGCTTTCA+TGG - chr5_1:24035164-24035183 None:intergenic 50.0%
GGGCAAGACTCTTCTGACTT+TGG - chr5_1:24035451-24035470 None:intergenic 50.0%
GAAGAGTCTTGCCCTGAGAA+AGG + chr5_1:24035457-24035476 Msa0724910:CDS 50.0%
TCTTGCCCTGAGAAAGGTCT+TGG + chr5_1:24035463-24035482 Msa0724910:CDS 50.0%
! GAGCTTAAATGGCGGTGTCA+AGG + chr5_1:24035681-24035700 Msa0724910:CDS 50.0%
! CCAAAGAAGAGCGTAAGTGG+CGG + chr5_1:24035748-24035767 Msa0724910:CDS 50.0%
CCGCCACTTAAGCTCTTCTT+TGG - chr5_1:24035979-24035998 None:intergenic 50.0%
GGCAGTGCCAAAGAAGAGAA+AGG + chr5_1:24036072-24036091 Msa0724910:CDS 50.0%
CAGGCAGTGAAGCTCTTCTT+TGG - chr5_1:24036339-24036358 None:intergenic 50.0%
TAACTCGGCACTCTTGGACT+TGG - chr5_1:24036400-24036419 None:intergenic 50.0%
GCCATATAACTCGGCACTCT+TGG - chr5_1:24036406-24036425 None:intergenic 50.0%
AAAGCTAGGCTAAGGGGACA+AGG + chr5_1:24036442-24036461 Msa0724910:CDS 50.0%
CTCTGTCATCTTCAAGGGAC+GGG + chr5_1:24036620-24036639 Msa0724910:CDS 50.0%
TCAGGAGCTTACTCTCAGGG+GGG + chr5_1:24032685-24032704 Msa0724910:CDS 55.0%
GTCTGCTTGCAGAGGCTATC+AGG + chr5_1:24033211-24033230 Msa0724910:intron 55.0%
CTTCGAAGTGGCTTGACCGT+TGG + chr5_1:24035035-24035054 Msa0724910:CDS 55.0%
AGTGGCTTGACCGTTGGACA+AGG + chr5_1:24035041-24035060 Msa0724910:CDS 55.0%
! TTTTCAGCCGAGACCGAGTC+AGG - chr5_1:24035106-24035125 None:intergenic 55.0%
!! TGACTCGGTCTCGGCTGAAA+AGG + chr5_1:24035105-24035124 Msa0724910:CDS 55.0%
CCCTCATCAGCTTTCATGGC+AGG - chr5_1:24035160-24035179 None:intergenic 55.0%
GCTGATGAGGGCTCAAGTTC+TGG + chr5_1:24035169-24035188 Msa0724910:CDS 55.0%
CCGCCACTTACGCTCTTCTT+TGG - chr5_1:24035751-24035770 None:intergenic 55.0%
! GGCGGTGCCAAAGAAGAGAA+AGG + chr5_1:24035766-24035785 Msa0724910:CDS 55.0%
! GGCGGTGCCAAAGAAGAGAA+AGG + chr5_1:24035766-24035785 Msa0724910:CDS 55.0%
TGAGCGGAAGAGGAGTTGCA+AGG + chr5_1:24036587-24036606 Msa0724910:CDS 55.0%
TCATCTTCAAGGGACGGGAC+TGG + chr5_1:24036625-24036644 Msa0724910:CDS 55.0%
GATGTTTCAGAGCAGGGGCC+AGG + chr5_1:24035391-24035410 Msa0724910:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 24032020 24036660 24032020 ID=Msa0724910;Name=Msa0724910
chr5_1 mRNA 24032020 24036660 24032020 ID=Msa0724910-mRNA-1;Parent=Msa0724910;Name=Msa0724910-mRNA-1;_AED=0.05;_eAED=0.05;_QI=181|0.66|0.42|1|0.83|0.71|7|0|747
chr5_1 exon 24032020 24032151 24032020 ID=Msa0724910-mRNA-1:exon:8833;Parent=Msa0724910-mRNA-1
chr5_1 exon 24032605 24032755 24032605 ID=Msa0724910-mRNA-1:exon:8834;Parent=Msa0724910-mRNA-1
chr5_1 exon 24032936 24033210 24032936 ID=Msa0724910-mRNA-1:exon:8835;Parent=Msa0724910-mRNA-1
chr5_1 exon 24033771 24033984 24033771 ID=Msa0724910-mRNA-1:exon:8836;Parent=Msa0724910-mRNA-1
chr5_1 exon 24034220 24034300 24034220 ID=Msa0724910-mRNA-1:exon:8837;Parent=Msa0724910-mRNA-1
chr5_1 exon 24034968 24036143 24034968 ID=Msa0724910-mRNA-1:exon:8838;Parent=Msa0724910-mRNA-1
chr5_1 exon 24036265 24036660 24036265 ID=Msa0724910-mRNA-1:exon:8839;Parent=Msa0724910-mRNA-1
chr5_1 five_prime_UTR 24032020 24032151 24032020 ID=Msa0724910-mRNA-1:five_prime_utr;Parent=Msa0724910-mRNA-1
chr5_1 five_prime_UTR 24032605 24032653 24032605 ID=Msa0724910-mRNA-1:five_prime_utr;Parent=Msa0724910-mRNA-1
chr5_1 CDS 24032654 24032755 24032654 ID=Msa0724910-mRNA-1:cds;Parent=Msa0724910-mRNA-1
chr5_1 CDS 24032936 24033210 24032936 ID=Msa0724910-mRNA-1:cds;Parent=Msa0724910-mRNA-1
chr5_1 CDS 24033771 24033984 24033771 ID=Msa0724910-mRNA-1:cds;Parent=Msa0724910-mRNA-1
chr5_1 CDS 24034220 24034300 24034220 ID=Msa0724910-mRNA-1:cds;Parent=Msa0724910-mRNA-1
chr5_1 CDS 24034968 24036143 24034968 ID=Msa0724910-mRNA-1:cds;Parent=Msa0724910-mRNA-1
chr5_1 CDS 24036265 24036660 24036265 ID=Msa0724910-mRNA-1:cds;Parent=Msa0724910-mRNA-1
Gene Sequence

>Msa0724910

ATGGGGAAAGGAAGAAGTCCTGGGAAATGGATCAGGAGCTTACTCTCAGGGGGGAAGAAATCAACATCGAAGTCAAGTTCGTCGAAGAAGAATGATATTTTTAAATCTTCGAGTAACAAGGATGCACTGGGATCTTCTGAGTTAACTGTGTCTAATCCAATTTCAACTGTGGATTCTTTGCAAATATCTGCACCAATATCTGGAGCTAATGTTGCGAAAGCAGTGCTTTCAGAAAAGGAAGTAGTTAATAAGTCATCACATGAGAGGGATATTCTCTCAAATGGAGATGAAAAGGCTCAGGCACCGGCCGTTGCTAATGTTGCATCTCAAGATGATCTTGAGACACTCAGGCTTACGGAAGCAGCTATTAAACTTCATGATTCTTGCATAACTTCATTGAAGGCACATCGGGAATTTCAAACTCTCAAAGCTATTACACAGCTGCAAGCTCTTATTCGTGGTCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATATTGTGTGAAGGGAATTGTTAAAGTGCAAGCATTGGCTCGTGGTTACAATGTTAGACGTTCTGATATTGGGCTTGAGGTCCTGAAAGTTCGCAAGGATACTCAATGTCCAAAATCTATCGGCATTGTTACATCTACACCGGCAGACAAGCTGTCAAAAAATGCCTTTGTTCACCAGCTGCTGGCTTCATCGACCCATGCGTTTCCTCTATCGCTAAATAGTGATCTTGGAGAACCTTACTTGGCTTCGAAGTGGCTTGACCGTTGGACAAGGTCAAGCTTTTGGGCACCTCTTCCAAAATTGAAGAAGAAACCTGACTCGGTCTCGGCTGAAAAGGCACAAGTTAAAAGGACTACCCGGAAATCACCTGCCATGAAAGCTGATGAGGGCTCAAGTTCTGGTTCTAACAAACAAAAACAACGTCCAAAAAAGGATTCAAATCACTCATTGGTTTCAGCTCAGGCACAAGAACACCCAAAGAAAGAAATTGAGAAAAGTAGTCTAAAGAAAACTCGTATGCAGAATGTTTCAGACAGATCTGAGATTGTTAATGAGAAAAGAAAACACAGCTCTAGGGCAACTTCAGATCAAACTGTTACTGATGTTTCAGAGCAGGGGCCAGGTTCCTCTTCTGAGAAAATGAAAGAAACGACGGTACCAAAGTCAGAAGAGTCTTGCCCTGAGAAAGGTCTTGGACAGAAAGTACTAGAAGAGAATAACGATAAGCCAAAAAAGAGCTCAAATGGTGGTGTCAAAGAAGAGAAAGGTCTTGGAAAGAAAACACTAGAAGAGATAAACGATAAGCCAAAGAAGAGCTTAAATGGCAGTACCAAAGAAGAGAACAGTCTTGGACCGAAAACACCAGAAGAGAACAACGATAAGCCAAAGAAGAGCTTAAATGGCGGTGTCAAGGAAGAGAAAAATCTTGGACAGAAAACACAAGAAAATAATGATAAGCCAAAGAAGAGCGTAAGTGGCGGTGCCAAAGAAGAGAAAGGTCTTGGACAGAAAGCGCAAGAAGAGAATAATGGTAAGCCAAAGAAGAGCTTAAATGGCGGTTTCAAAGAAGAGAAAGATGTTGGACAGAAAGCACAAGAGAATAATGATAAGCCAAAGAAGAGCTTAAATGGCGGTGTCAAAGAAGAGAAAGATCTTGGACAAAAAACACAAGAGAATAATGATAAGCCAAAGAAGAGCTTAAGTGGCGGTGCCAAAGAAGAGAAAGGTCTTGGACAGAAAGCGCAAGAAGAGAATAATGGTAAGCCAAAGAAGAGCTTGAATGGCAGTGCCAAAGAAGAGAAAGGTCTCAGACAGAAAGCACTAGAACAGGAAGGTCATAATGATCCTACTGCTAAGGTAGGAGATGAAGAAATAGGAGTTAGCGAAGACTTGAATGGCGGTGACAAAGTTATCAGCAACAATTACCAAAGAAGAGCTTCACTGCCTGCTAATTTTAATGATCAAGAAAATGAGATACACAACACTCCAAGTCCAAGAGTGCCGAGTTATATGGCTCCGACTGAATCAGCAAAAGCTAGGCTAAGGGGACAAGGCTCCCCAAGATTTGCTACTGATATCATAGACAAAAACAGTTTAACCAGGAGGCATTCACTTTCATCTTCACTTAACAGCAAGTCAGGTTCATTTTCCCCAAGAGTAGAAAAGCTGATAAATTTGAGCGGAAGAGGAGTTGCAAGGACTGATAAATCTCTGTCATCTTCAAGGGACGGGACTGGTAAGCATTTATAA

Protein sequence

>Msa0724910

MGKGRSPGKWIRSLLSGGKKSTSKSSSSKKNDIFKSSSNKDALGSSELTVSNPISTVDSLQISAPISGANVAKAVLSEKEVVNKSSHERDILSNGDEKAQAPAVANVASQDDLETLRLTEAAIKLHDSCITSLKAHREFQTLKAITQLQALIRGHLVRRQAVSALYCVKGIVKVQALARGYNVRRSDIGLEVLKVRKDTQCPKSIGIVTSTPADKLSKNAFVHQLLASSTHAFPLSLNSDLGEPYLASKWLDRWTRSSFWAPLPKLKKKPDSVSAEKAQVKRTTRKSPAMKADEGSSSGSNKQKQRPKKDSNHSLVSAQAQEHPKKEIEKSSLKKTRMQNVSDRSEIVNEKRKHSSRATSDQTVTDVSEQGPGSSSEKMKETTVPKSEESCPEKGLGQKVLEENNDKPKKSSNGGVKEEKGLGKKTLEEINDKPKKSLNGSTKEENSLGPKTPEENNDKPKKSLNGGVKEEKNLGQKTQENNDKPKKSVSGGAKEEKGLGQKAQEENNGKPKKSLNGGFKEEKDVGQKAQENNDKPKKSLNGGVKEEKDLGQKTQENNDKPKKSLSGGAKEEKGLGQKAQEENNGKPKKSLNGSAKEEKGLRQKALEQEGHNDPTAKVGDEEIGVSEDLNGGDKVISNNYQRRASLPANFNDQENEIHNTPSPRVPSYMAPTESAKARLRGQGSPRFATDIIDKNSLTRRHSLSSSLNSKSGSFSPRVEKLINLSGRGVARTDKSLSSSRDGTGKHL*