Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199340 | XP_003594716.1 | 100.000 | 192 | 0 | 0 | 1 | 192 | 1 | 192 | 1.89e-135 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199340 | sp|P57741|PFD3_ARATH | 83.721 | 172 | 28 | 0 | 11 | 182 | 13 | 184 | 6.37e-106 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199340 | G7IMS6 | 100.000 | 192 | 0 | 0 | 1 | 192 | 1 | 192 | 9.03e-136 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044990 | Msa0199340 | 0.828012 | 1.138586e-54 | -8.615850e-47 |
| Msa0115870 | Msa0199340 | 0.824826 | 6.540047e-54 | -8.615850e-47 |
| Msa0199340 | Msa0199620 | 0.837118 | 6.275778e-57 | -8.615850e-47 |
| Msa0199340 | Msa0280370 | 0.819370 | 1.203635e-52 | -8.615850e-47 |
| Msa0199340 | Msa0319640 | 0.825991 | 3.465747e-54 | -8.615850e-47 |
| Msa0199340 | Msa1175350 | 0.810456 | 1.142663e-50 | -8.615850e-47 |
| Msa0199340 | Msa1269790 | 0.850069 | 2.154525e-60 | -8.615850e-47 |
| Msa0199340 | Msa1315890 | 0.818972 | 1.482825e-52 | -8.615850e-47 |
| Msa0199340 | Msa1374830 | 0.802769 | 4.793946e-49 | -8.615850e-47 |
| Msa0199340 | Msa1420430 | 0.824550 | 7.595838e-54 | -8.615850e-47 |
| Msa0199340 | Msa1445370 | 0.822267 | 2.595996e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199340 | MtrunA17_Chr2g0294251 | 100.000 | 192 | 0 | 0 | 1 | 192 | 1 | 192 | 1.74e-139 | 387 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199340 | AT5G49510.2 | 83.721 | 172 | 28 | 0 | 11 | 182 | 13 | 184 | 6.48e-107 | 305 |
| Msa0199340 | AT5G49510.1 | 83.721 | 172 | 28 | 0 | 11 | 182 | 13 | 184 | 6.48e-107 | 305 |
Find 44 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTAATCTAAATCAAATT+TGG | 0.077040 | 2_1:+18245425 | Msa0199340:five_prime_UTR |
| AAACTGATTCTGTGTGTTTA+TGG | 0.168432 | 2_1:+18250201 | Msa0199340:CDS |
| CAATTGCTCGTGTTTATAAT+TGG | 0.169849 | 2_1:+18250811 | Msa0199340:CDS |
| TGATTATGATTATGATTTCT+TGG | 0.235794 | 2_1:+18251088 | Msa0199340:three_prime_UTR |
| TTCCTTCCTGTCTGTAGTTC+TGG | 0.239248 | 2_1:+18251002 | Msa0199340:three_prime_UTR |
| GTTTGCCCAAAGTAGTTTCT+AGG | 0.258157 | 2_1:+18251024 | Msa0199340:three_prime_UTR |
| CTTGTTGAGTTCTCCGTTGA+TGG | 0.269073 | 2_1:-18250839 | None:intergenic |
| TTCTAATCTAAATCAAATTT+GGG | 0.277414 | 2_1:+18245426 | Msa0199340:five_prime_UTR |
| CAAACCTATCTCACTCAATT+AGG | 0.296890 | 2_1:+18245606 | Msa0199340:CDS |
| GTGTATTCTACTCTGCAATT+TGG | 0.355142 | 2_1:+18251168 | Msa0199340:three_prime_UTR |
| AATTGCTCGTGTTTATAATT+GGG | 0.358053 | 2_1:+18250812 | Msa0199340:CDS |
| AGCAACAAGAACTTCTAAAC+TGG | 0.406664 | 2_1:-18250392 | None:intergenic |
| GAGACCTAATTGAGTGAGAT+AGG | 0.406753 | 2_1:-18245610 | None:intergenic |
| CGCGCAGCAAAGGGAACTTC+AGG | 0.407214 | 2_1:+18246633 | Msa0199340:CDS |
| TGATTCTGTGTGTTTATGGC+TGG | 0.425847 | 2_1:+18250205 | Msa0199340:CDS |
| GCCTTCTGACACCTCAAAAT+CGG | 0.428491 | 2_1:-18250153 | None:intergenic |
| CCTATCCTAGAAACTACTTT+GGG | 0.439541 | 2_1:-18251029 | None:intergenic |
| TGCGACTTTGCAAGCAAAGA+AGG | 0.447827 | 2_1:+18247600 | Msa0199340:CDS |
| TCCTATCCTAGAAACTACTT+TGG | 0.458624 | 2_1:-18251030 | None:intergenic |
| AGACCTGAGTAATTGTCGTT+TGG | 0.467839 | 2_1:-18250435 | None:intergenic |
| AACTGGCTCTAGCATTATCC+AGG | 0.479058 | 2_1:-18250375 | None:intergenic |
| CCCAAAGTAGTTTCTAGGAT+AGG | 0.497185 | 2_1:+18251029 | Msa0199340:three_prime_UTR |
| TGAAGCTCCTCGCGCAGCAA+AGG | 0.498907 | 2_1:+18246623 | Msa0199340:CDS |
| TTGCAGGCTTCAGCAATACA+AGG | 0.499475 | 2_1:+18246591 | Msa0199340:intron |
| GATTCTGTGTGTTTATGGCT+GGG | 0.504747 | 2_1:+18250206 | Msa0199340:CDS |
| GAAGCTCCTCGCGCAGCAAA+GGG | 0.509666 | 2_1:+18246624 | Msa0199340:CDS |
| CGATTGCAGTGCTTCAACAA+TGG | 0.524135 | 2_1:+18245509 | Msa0199340:exon |
| TTTGTCTTGTATGATCATAC+GGG | 0.549051 | 2_1:+18251146 | Msa0199340:three_prime_UTR |
| GAAGTTCCCTTTGCTGCGCG+AGG | 0.553650 | 2_1:-18246630 | None:intergenic |
| CACAGAATCAGTTTCTTCGA+TGG | 0.555916 | 2_1:-18250192 | None:intergenic |
| GTTGGAATATTCATTAGAAG+AGG | 0.558241 | 2_1:+18250241 | Msa0199340:CDS |
| GCGACTTTGCAAGCAAAGAA+GGG | 0.569412 | 2_1:+18247601 | Msa0199340:CDS |
| GCTGGGAGCAAATGTTATGT+TGG | 0.581899 | 2_1:+18250223 | Msa0199340:CDS |
| TTGCAAGCAAAGAAGGGCAC+CGG | 0.592987 | 2_1:+18247607 | Msa0199340:CDS |
| TCTTCAACGAACTGAGCACC+TGG | 0.598579 | 2_1:-18245579 | None:intergenic |
| AACCAGAACTACAGACAGGA+AGG | 0.605903 | 2_1:-18251004 | None:intergenic |
| AGTCCTCAAACGAACCTCAC+CGG | 0.608080 | 2_1:-18247626 | None:intergenic |
| GGCAAACCAGAACTACAGAC+AGG | 0.611996 | 2_1:-18251008 | None:intergenic |
| ATAATTGGGATGTCCATCAA+CGG | 0.640983 | 2_1:+18250826 | Msa0199340:CDS |
| ACAGAACGAAGAGGAATACC+AGG | 0.644106 | 2_1:+18245561 | Msa0199340:CDS |
| AGCAAAGAAGGGCACCGGTG+AGG | 0.645137 | 2_1:+18247612 | Msa0199340:CDS |
| GGACCAAACGACAATTACTC+AGG | 0.647185 | 2_1:+18250432 | Msa0199340:CDS |
| GACGCATAATCTAAGCTGAA+CGG | 0.653616 | 2_1:-18250942 | None:intergenic |
| TCAGCAGTGACAGAACGAAG+AGG | 0.691120 | 2_1:+18245552 | Msa0199340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCTATATTTTTTATGAA+TGG | + | chr2_1:18246385-18246404 | Msa0199340:intron | 10.0% |
| !!! | AATTTATTTTATGCTTTAAA+GGG | + | chr2_1:18246514-18246533 | Msa0199340:intron | 10.0% |
| !! | ATAAATTTCAAGATAATTAA+GGG | - | chr2_1:18249435-18249454 | None:intergenic | 10.0% |
| !! | TATAAATTTCAAGATAATTA+AGG | - | chr2_1:18249436-18249455 | None:intergenic | 10.0% |
| !!! | TTATATAAAGGTATAATTTA+GGG | - | chr2_1:18249571-18249590 | None:intergenic | 10.0% |
| !!! | ATTATATAAAGGTATAATTT+AGG | - | chr2_1:18249572-18249591 | None:intergenic | 10.0% |
| !! | TGAAAAAAAGAATTATATAA+AGG | - | chr2_1:18249583-18249602 | None:intergenic | 10.0% |
| !!! | ATATAATTCTTTTTTTCAAA+TGG | + | chr2_1:18249585-18249604 | Msa0199340:intron | 10.0% |
| !!! | TATAATTCTTTTTTTCAAAT+GGG | + | chr2_1:18249586-18249605 | Msa0199340:intron | 10.0% |
| !! | AATGCAAAAAATAAAATAAA+AGG | - | chr2_1:18250739-18250758 | None:intergenic | 10.0% |
| !! | ACATATATATAAAAAAGAAA+TGG | - | chr2_1:18251057-18251076 | None:intergenic | 10.0% |
| !! | TTTCTAATCTAAATCAAATT+TGG | + | chr2_1:18245425-18245444 | Msa0199340:five_prime_UTR | 15.0% |
| !! | TTCTAATCTAAATCAAATTT+GGG | + | chr2_1:18245426-18245445 | Msa0199340:five_prime_UTR | 15.0% |
| !!! | ATTTCATAATGAAGTAATTT+TGG | + | chr2_1:18246195-18246214 | Msa0199340:intron | 15.0% |
| !!! | GAATTTATTTTATGCTTTAA+AGG | + | chr2_1:18246513-18246532 | Msa0199340:intron | 15.0% |
| !!! | ATTTATTTTATGCTTTAAAG+GGG | + | chr2_1:18246515-18246534 | Msa0199340:intron | 15.0% |
| !! | TTGAAATCTTAAAATATCAT+TGG | - | chr2_1:18246777-18246796 | None:intergenic | 15.0% |
| !!! | TTCTCTTAATAGTTTTTTAT+AGG | - | chr2_1:18247241-18247260 | None:intergenic | 15.0% |
| !!! | GTAGATAAATTTTAGATAAA+AGG | + | chr2_1:18247673-18247692 | Msa0199340:intron | 15.0% |
| !!! | AATTTTAGATAAAAGGTTTT+TGG | + | chr2_1:18247680-18247699 | Msa0199340:intron | 15.0% |
| !! | AAATTTAACAATTAAACATG+GGG | - | chr2_1:18248002-18248021 | None:intergenic | 15.0% |
| !! | GAAATTTAACAATTAAACAT+GGG | - | chr2_1:18248003-18248022 | None:intergenic | 15.0% |
| !! | TGAAATTTAACAATTAAACA+TGG | - | chr2_1:18248004-18248023 | None:intergenic | 15.0% |
| !!! | TTTAGGATTTTATTATCTTA+AGG | - | chr2_1:18249098-18249117 | None:intergenic | 15.0% |
| !!! | TCTATTACTTTAATTTGTTT+AGG | - | chr2_1:18249115-18249134 | None:intergenic | 15.0% |
| !! | AAGATTATACTGTTTAATTA+GGG | - | chr2_1:18249147-18249166 | None:intergenic | 15.0% |
| !! | TAAGATTATACTGTTTAATT+AGG | - | chr2_1:18249148-18249167 | None:intergenic | 15.0% |
| !!! | AAGATAAATCTCTAAAATTA+AGG | + | chr2_1:18249205-18249224 | Msa0199340:intron | 15.0% |
| !! | ATCAATATCCTATTAATATA+AGG | + | chr2_1:18249237-18249256 | Msa0199340:intron | 15.0% |
| !! | TCAATATCCTATTAATATAA+GGG | + | chr2_1:18249238-18249257 | Msa0199340:intron | 15.0% |
| !!! | ATAATTCTTTTTTTCAAATG+GGG | + | chr2_1:18249587-18249606 | Msa0199340:intron | 15.0% |
| !!! | ATAACATTATATTTTGTCAA+TGG | + | chr2_1:18249805-18249824 | Msa0199340:intron | 15.0% |
| !! | TGTAGTAAATGAATTTAAAA+TGG | - | chr2_1:18250066-18250085 | None:intergenic | 15.0% |
| !! | AATTCATCAAAATTAAAAAC+TGG | - | chr2_1:18250978-18250997 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTTGATGAATTG+TGG | + | chr2_1:18250979-18250998 | Msa0199340:three_prime_UTR | 15.0% |
| !!! | AAACATTTTTGTATAATTGA+TGG | + | chr2_1:18251117-18251136 | Msa0199340:three_prime_UTR | 15.0% |
| !!! | AACATTTTTGTATAATTGAT+GGG | + | chr2_1:18251118-18251137 | Msa0199340:three_prime_UTR | 15.0% |
| !! | TTCATTTGTATAGTTTAGTT+TGG | + | chr2_1:18245769-18245788 | Msa0199340:intron | 20.0% |
| !!! | TATGACATTTTAGTACTTTA+TGG | + | chr2_1:18245880-18245899 | Msa0199340:intron | 20.0% |
| !!! | ATTAAGGTATTAAGATGAAA+AGG | + | chr2_1:18246004-18246023 | Msa0199340:intron | 20.0% |
| !!! | TTAAGGTATTAAGATGAAAA+GGG | + | chr2_1:18246005-18246024 | Msa0199340:intron | 20.0% |
| !!! | GAAAATTTTGGTTTGAATTT+CGG | + | chr2_1:18246113-18246132 | Msa0199340:intron | 20.0% |
| !!! | AAAAAACGAATTTTACAAAC+TGG | - | chr2_1:18246367-18246386 | None:intergenic | 20.0% |
| !!! | TTTTCAAGTTAATATTGCAT+TGG | + | chr2_1:18246474-18246493 | Msa0199340:intron | 20.0% |
| !! | GCATATTATACTTTATCTTT+AGG | + | chr2_1:18246671-18246690 | Msa0199340:intron | 20.0% |
| !! | TAGTTTGATTGAAGATAAAA+AGG | + | chr2_1:18246718-18246737 | Msa0199340:intron | 20.0% |
| !!! | TATTTTAAGATTTCAACTTC+TGG | + | chr2_1:18246781-18246800 | Msa0199340:intron | 20.0% |
| !! | AATTACCTTTCTAATTGATT+TGG | + | chr2_1:18247076-18247095 | Msa0199340:intron | 20.0% |
| !!! | ATTACCTTTCTAATTGATTT+GGG | + | chr2_1:18247077-18247096 | Msa0199340:intron | 20.0% |
| !! | AACTATTAAGAGAAACTATT+AGG | + | chr2_1:18247247-18247266 | Msa0199340:intron | 20.0% |
| !!! | GAAATTTTGTGCATTTTATT+TGG | + | chr2_1:18247754-18247773 | Msa0199340:intron | 20.0% |
| !! | AATTTAACAATTAAACATGG+GGG | - | chr2_1:18248001-18248020 | None:intergenic | 20.0% |
| !!! | TAAACAAAAAATCCTTTTCT+AGG | - | chr2_1:18248311-18248330 | None:intergenic | 20.0% |
| !! | TAAATTCAAATGCTTCTTAA+TGG | + | chr2_1:18248633-18248652 | Msa0199340:intron | 20.0% |
| !! | ATTAGTTACATTGAAAACTA+AGG | + | chr2_1:18249882-18249901 | Msa0199340:intron | 20.0% |
| !!! | TTTTAAATAGTTGCATCATA+AGG | - | chr2_1:18250043-18250062 | None:intergenic | 20.0% |
| !!! | TATTATAGTTGTTTTTTCCT+CGG | + | chr2_1:18250285-18250304 | Msa0199340:intron | 20.0% |
| !! | TAAATTTATGTTAACATCAG+AGG | + | chr2_1:18250515-18250534 | Msa0199340:intron | 20.0% |
| !! | AAATTTATGTTAACATCAGA+GGG | + | chr2_1:18250516-18250535 | Msa0199340:intron | 20.0% |
| !!! | TATTGATTGTATATGTTATC+AGG | + | chr2_1:18250785-18250804 | Msa0199340:intron | 20.0% |
| !! | TGATTATGATTATGATTTCT+TGG | + | chr2_1:18251088-18251107 | Msa0199340:three_prime_UTR | 20.0% |
| !!! | ATTTGTTGTCGTTTTGTTTT+GGG | - | chr2_1:18245463-18245482 | None:intergenic | 25.0% |
| !!! | TATTTGTTGTCGTTTTGTTT+TGG | - | chr2_1:18245464-18245483 | None:intergenic | 25.0% |
| !!! | TCTCAAAATCTCATTTTTCA+TGG | + | chr2_1:18245698-18245717 | Msa0199340:intron | 25.0% |
| !! | AATTACTAACAGTAGGTTTT+AGG | + | chr2_1:18245975-18245994 | Msa0199340:intron | 25.0% |
| !!! | AGGTTTTAGGTAAAGTATTA+AGG | + | chr2_1:18245988-18246007 | Msa0199340:intron | 25.0% |
| ! | TTAAACTGAATGTGATTATG+AGG | + | chr2_1:18246040-18246059 | Msa0199340:intron | 25.0% |
| ! | AATGTGATTATGAGGTAAAT+TGG | + | chr2_1:18246048-18246067 | Msa0199340:intron | 25.0% |
| ! | GAGGTAAATTGGATTAATAT+AGG | + | chr2_1:18246059-18246078 | Msa0199340:intron | 25.0% |
| !! | ATTACAGTCTTCGAAAATTT+TGG | + | chr2_1:18246101-18246120 | Msa0199340:intron | 25.0% |
| !! | GAAAATTTGTGATTTTGGAT+TGG | + | chr2_1:18246144-18246163 | Msa0199340:intron | 25.0% |
| ! | TATAGTTAGATTAGTGAATG+AGG | + | chr2_1:18246265-18246284 | Msa0199340:intron | 25.0% |
| ! | CAACTATTAATAACAAAGCA+AGG | - | chr2_1:18246435-18246454 | None:intergenic | 25.0% |
| ! | CAAACTATTAACAAACTACA+AGG | - | chr2_1:18246705-18246724 | None:intergenic | 25.0% |
| !!! | TTACCTTTCTAATTGATTTG+GGG | + | chr2_1:18247078-18247097 | Msa0199340:intron | 25.0% |
| ! | AACTATTAGGAAAGATTTAG+AGG | + | chr2_1:18247260-18247279 | Msa0199340:intron | 25.0% |
| !! | GTTGTTTGTTTGTTCTATTT+TGG | + | chr2_1:18247419-18247438 | Msa0199340:intron | 25.0% |
| ! | TATCTTTCAAATGTTCAGAT+TGG | + | chr2_1:18247708-18247727 | Msa0199340:intron | 25.0% |
| ! | ATATACAAGCACTAATTACA+TGG | + | chr2_1:18247863-18247882 | Msa0199340:intron | 25.0% |
| ! | TAAATATACCTCTAGACAAA+AGG | - | chr2_1:18247893-18247912 | None:intergenic | 25.0% |
| ! | AGATGATGAATCAACTATTA+GGG | - | chr2_1:18248160-18248179 | None:intergenic | 25.0% |
| ! | TTAGAACTACATCTTTATGT+GGG | - | chr2_1:18248236-18248255 | None:intergenic | 25.0% |
| !! | TTTAGAACTACATCTTTATG+TGG | - | chr2_1:18248237-18248256 | None:intergenic | 25.0% |
| !! | TCCTTAACTAATGCTTTTAA+GGG | + | chr2_1:18248696-18248715 | Msa0199340:intron | 25.0% |
| ! | AACATTGTCTAAGTTAGAAT+TGG | - | chr2_1:18249006-18249025 | None:intergenic | 25.0% |
| ! | TTATACTGTTTAATTAGGGT+AGG | - | chr2_1:18249143-18249162 | None:intergenic | 25.0% |
| ! | TTTCAAATGTTCGAATGTTA+TGG | + | chr2_1:18249621-18249640 | Msa0199340:intron | 25.0% |
| !!! | ATATAAAAGTACTACGTGTA+AGG | - | chr2_1:18249864-18249883 | None:intergenic | 25.0% |
| ! | GCAGTAACTATTGTATAAAA+AGG | - | chr2_1:18249926-18249945 | None:intergenic | 25.0% |
| !! | GAATTGATAATCGTTACTTA+GGG | - | chr2_1:18249971-18249990 | None:intergenic | 25.0% |
| !! | TTTTACTACACAAAATGATG+AGG | - | chr2_1:18249993-18250012 | None:intergenic | 25.0% |
| !! | AGAAGATTTATGTTTGACTT+TGG | + | chr2_1:18250114-18250133 | Msa0199340:intron | 25.0% |
| !!! | AGGTACTTGTATTTTAGTTT+TGG | + | chr2_1:18250261-18250280 | Msa0199340:intron | 25.0% |
| !!! | GGTACTTGTATTTTAGTTTT+GGG | + | chr2_1:18250262-18250281 | Msa0199340:intron | 25.0% |
| ! | TGTAAGTTAAAATTTAACCG+AGG | - | chr2_1:18250305-18250324 | None:intergenic | 25.0% |
| ! | TGTGAAAAGCAAAAAAAATG+AGG | - | chr2_1:18250480-18250499 | None:intergenic | 25.0% |
| ! | AATTGCTCGTGTTTATAATT+GGG | + | chr2_1:18250812-18250831 | Msa0199340:CDS | 25.0% |
| !! | TTTTGTCTTGTATGATCATA+CGG | + | chr2_1:18251145-18251164 | Msa0199340:three_prime_UTR | 25.0% |
| !! | AAGTTTCTTCTGAAGTGTTA+TGG | + | chr2_1:18245844-18245863 | Msa0199340:intron | 30.0% |
| !! | AGTTTCTTCTGAAGTGTTAT+GGG | + | chr2_1:18245845-18245864 | Msa0199340:intron | 30.0% |
| CGTAGATAATTACTAACAGT+AGG | + | chr2_1:18245968-18245987 | Msa0199340:intron | 30.0% | |
| ! | GGTGAGAAAATTTGTGATTT+TGG | + | chr2_1:18246139-18246158 | Msa0199340:intron | 30.0% |
| ! | GTACTTAGATTTTCATTCTC+TGG | + | chr2_1:18246326-18246345 | Msa0199340:intron | 30.0% |
| ! | TAAGATTTCAACTTCTGGAA+AGG | + | chr2_1:18246786-18246805 | Msa0199340:intron | 30.0% |
| ! | AGCAGTAAACTCTATGTTTT+GGG | + | chr2_1:18246860-18246879 | Msa0199340:intron | 30.0% |
| !!! | TTTCGTTTTGAAAACATGCA+TGG | + | chr2_1:18246912-18246931 | Msa0199340:intron | 30.0% |
| !!! | TTCGTTTTGAAAACATGCAT+GGG | + | chr2_1:18246913-18246932 | Msa0199340:intron | 30.0% |
| TTAAACAAGACTAGACAGTT+TGG | + | chr2_1:18246937-18246956 | Msa0199340:intron | 30.0% | |
| AAAATGCAACAACTTTGGAT+TGG | - | chr2_1:18247006-18247025 | None:intergenic | 30.0% | |
| TCTAACATCTTCTCTACTAT+AGG | - | chr2_1:18247109-18247128 | None:intergenic | 30.0% | |
| TAGAGAAGATGTTAGAAAAC+AGG | + | chr2_1:18247113-18247132 | Msa0199340:intron | 30.0% | |
| AGATTTAGAGGTTAATGAGT+TGG | + | chr2_1:18247272-18247291 | Msa0199340:intron | 30.0% | |
| ! | TAATGAGTTGGATCCAAATA+TGG | + | chr2_1:18247284-18247303 | Msa0199340:intron | 30.0% |
| GTTCTATCACAAACCATATT+TGG | - | chr2_1:18247300-18247319 | None:intergenic | 30.0% | |
| ! | TGGTTTGTGATAGAACATTA+TGG | + | chr2_1:18247304-18247323 | Msa0199340:intron | 30.0% |
| ! | TCTAAGCACTTTTCAATATC+AGG | - | chr2_1:18247574-18247593 | None:intergenic | 30.0% |
| CTATTTACTACATCCTTAAG+AGG | + | chr2_1:18247824-18247843 | Msa0199340:intron | 30.0% | |
| AGAAAAGAAAATTGAAGGCA+TGG | - | chr2_1:18248071-18248090 | None:intergenic | 30.0% | |
| ! | ATGCCTTCAATTTTCTTTTC+TGG | + | chr2_1:18248070-18248089 | Msa0199340:intron | 30.0% |
| ! | TGCCTTCAATTTTCTTTTCT+GGG | + | chr2_1:18248071-18248090 | Msa0199340:intron | 30.0% |
| TACCCAGAAAAGAAAATTGA+AGG | - | chr2_1:18248076-18248095 | None:intergenic | 30.0% | |
| GATGATGAATCAACTATTAG+GGG | - | chr2_1:18248159-18248178 | None:intergenic | 30.0% | |
| GAGATGATGAATCAACTATT+AGG | - | chr2_1:18248161-18248180 | None:intergenic | 30.0% | |
| TAGAACTACATCTTTATGTG+GGG | - | chr2_1:18248235-18248254 | None:intergenic | 30.0% | |
| ! | AGTTCTAACTAGAAGAGTTT+AGG | - | chr2_1:18248446-18248465 | None:intergenic | 30.0% |
| TTCACTATACCTTGAATCAT+TGG | + | chr2_1:18248657-18248676 | Msa0199340:intron | 30.0% | |
| !! | CTTAAAAGCATTAGTTAAGG+AGG | - | chr2_1:18248697-18248716 | None:intergenic | 30.0% |
| ! | CTCCTTAACTAATGCTTTTA+AGG | + | chr2_1:18248695-18248714 | Msa0199340:intron | 30.0% |
| AACACAGTGTTGTCAAATAT+CGG | - | chr2_1:18248894-18248913 | None:intergenic | 30.0% | |
| AATGGGAGTTAATTCTACAT+TGG | - | chr2_1:18248944-18248963 | None:intergenic | 30.0% | |
| !! | GTATTTCGGGTTTCTTTAAT+GGG | - | chr2_1:18248961-18248980 | None:intergenic | 30.0% |
| !! | AGTATTTCGGGTTTCTTTAA+TGG | - | chr2_1:18248962-18248981 | None:intergenic | 30.0% |
| TCAAAGTCCTCCATTAAATA+AGG | + | chr2_1:18249053-18249072 | Msa0199340:intron | 30.0% | |
| !! | TAAGATGCCTTATTTAATGG+AGG | - | chr2_1:18249063-18249082 | None:intergenic | 30.0% |
| !! | CCTTAAGATGCCTTATTTAA+TGG | - | chr2_1:18249066-18249085 | None:intergenic | 30.0% |
| ! | CCATTAAATAAGGCATCTTA+AGG | + | chr2_1:18249063-18249082 | Msa0199340:intron | 30.0% |
| AGCATGACCCTTATATTAAT+AGG | - | chr2_1:18249248-18249267 | None:intergenic | 30.0% | |
| ! | GCTTGTTAAGGATTCAAAAA+TGG | + | chr2_1:18249279-18249298 | Msa0199340:intron | 30.0% |
| !! | AGGAAGTTTTATCTTGGAAA+CGG | - | chr2_1:18249367-18249386 | None:intergenic | 30.0% |
| !! | CTAAAGAGGAAGTTTTATCT+TGG | - | chr2_1:18249373-18249392 | None:intergenic | 30.0% |
| GCTTGTTTAGAAATCTAAAG+AGG | - | chr2_1:18249387-18249406 | None:intergenic | 30.0% | |
| AGTACTGTATGTTTAATGCT+AGG | - | chr2_1:18249526-18249545 | None:intergenic | 30.0% | |
| GAATTGTTCAAACTCTATGA+AGG | - | chr2_1:18249549-18249568 | None:intergenic | 30.0% | |
| ! | CTCAAATTTGCATCTTGTTT+AGG | + | chr2_1:18249649-18249668 | Msa0199340:intron | 30.0% |
| ATTACGGATGTAACATCATT+TGG | - | chr2_1:18249680-18249699 | None:intergenic | 30.0% | |
| !!! | GTGTTGATAATTTTCTTGCA+GGG | - | chr2_1:18249777-18249796 | None:intergenic | 30.0% |
| !!! | AGTGTTGATAATTTTCTTGC+AGG | - | chr2_1:18249778-18249797 | None:intergenic | 30.0% |
| ! | GGAATTGATAATCGTTACTT+AGG | - | chr2_1:18249972-18249991 | None:intergenic | 30.0% |
| ! | TTATGTTTGACTTTGGATAC+AGG | + | chr2_1:18250121-18250140 | Msa0199340:intron | 30.0% |
| ! | AAACTGATTCTGTGTGTTTA+TGG | + | chr2_1:18250201-18250220 | Msa0199340:CDS | 30.0% |
| GTTGGAATATTCATTAGAAG+AGG | + | chr2_1:18250241-18250260 | Msa0199340:CDS | 30.0% | |
| ! | ACAATATGATTTTCTGTTGC+AGG | + | chr2_1:18250330-18250349 | Msa0199340:intron | 30.0% |
| ATAAGAATGCAAAGGAATGA+AGG | - | chr2_1:18250598-18250617 | None:intergenic | 30.0% | |
| CATTCCTTTGCATTCTTATT+AGG | + | chr2_1:18250599-18250618 | Msa0199340:intron | 30.0% | |
| CAATTGCTCGTGTTTATAAT+TGG | + | chr2_1:18250811-18250830 | Msa0199340:CDS | 30.0% | |
| TTTGTCTTGTATGATCATAC+GGG | + | chr2_1:18251146-18251165 | Msa0199340:three_prime_UTR | 30.0% | |
| CAAACCTATCTCACTCAATT+AGG | + | chr2_1:18245606-18245625 | Msa0199340:CDS | 35.0% | |
| !! | CTCTTGCTTTTCTTCAAGAA+AGG | + | chr2_1:18245646-18245665 | Msa0199340:CDS | 35.0% |
| !! | GTTTCTTCTGAAGTGTTATG+GGG | + | chr2_1:18245846-18245865 | Msa0199340:intron | 35.0% |
| ! | GTGTGAAAGAGTATGTTTAG+CGG | + | chr2_1:18245902-18245921 | Msa0199340:intron | 35.0% |
| GGTATTAAGATGAAAAGGGA+TGG | + | chr2_1:18246009-18246028 | Msa0199340:intron | 35.0% | |
| !!! | TTTTGGTTTGAATTTCGGAG+TGG | + | chr2_1:18246118-18246137 | Msa0199340:intron | 35.0% |
| ! | GCAAGGTGTTTCATTTCATA+TGG | - | chr2_1:18246418-18246437 | None:intergenic | 35.0% |
| TCTGAGCATATATTTCTTGC+AGG | + | chr2_1:18246575-18246594 | Msa0199340:intron | 35.0% | |
| ! | GAGCAGTAAACTCTATGTTT+TGG | + | chr2_1:18246859-18246878 | Msa0199340:intron | 35.0% |
| !!! | TATGTTTTGGGATCGTGTTA+TGG | + | chr2_1:18246872-18246891 | Msa0199340:intron | 35.0% |
| !!! | ATGTTTTGGGATCGTGTTAT+GGG | + | chr2_1:18246873-18246892 | Msa0199340:intron | 35.0% |
| TGCAGAAAATGCAACAACTT+TGG | - | chr2_1:18247011-18247030 | None:intergenic | 35.0% | |
| CTACCCCAAATCAATTAGAA+AGG | - | chr2_1:18247084-18247103 | None:intergenic | 35.0% | |
| AGATGTTAGAAAACAGGCTT+AGG | + | chr2_1:18247119-18247138 | Msa0199340:intron | 35.0% | |
| ! | AAAACAGGCTTAGGTTGTTT+GGG | + | chr2_1:18247128-18247147 | Msa0199340:intron | 35.0% |
| CATAGTAGTGACACTATTTG+TGG | + | chr2_1:18247529-18247548 | Msa0199340:intron | 35.0% | |
| TGAGAAATCAGAACCTCTTA+AGG | - | chr2_1:18247840-18247859 | None:intergenic | 35.0% | |
| ! | TTGTTCTTGTTGTCACATGA+TGG | + | chr2_1:18247914-18247933 | Msa0199340:intron | 35.0% |
| !!! | TTTTTTTGCCTGCTGGAATT+TGG | + | chr2_1:18248119-18248138 | Msa0199340:intron | 35.0% |
| ! | CTCTTCTAGTTAGAACTCTT+TGG | + | chr2_1:18248449-18248468 | Msa0199340:intron | 35.0% |
| AAGAACAGACCAATGATTCA+AGG | - | chr2_1:18248669-18248688 | None:intergenic | 35.0% | |
| !! | GCCCTTAAAAGCATTAGTTA+AGG | - | chr2_1:18248700-18248719 | None:intergenic | 35.0% |
| ! | GTCATAAATGAGTTGGACAT+GGG | - | chr2_1:18248731-18248750 | None:intergenic | 35.0% |
| ! | TGTCATAAATGAGTTGGACA+TGG | - | chr2_1:18248732-18248751 | None:intergenic | 35.0% |
| ! | CAGTCTTGTCATAAATGAGT+TGG | - | chr2_1:18248738-18248757 | None:intergenic | 35.0% |
| ATCCTTCACAAAATTGGCTA+CGG | + | chr2_1:18248847-18248866 | Msa0199340:intron | 35.0% | |
| GGATAATACTCCACACTTAA+GGG | - | chr2_1:18248985-18249004 | None:intergenic | 35.0% | |
| TGGATAATACTCCACACTTA+AGG | - | chr2_1:18248986-18249005 | None:intergenic | 35.0% | |
| AATGCTAACAAGTGACCTAA+GGG | - | chr2_1:18249411-18249430 | None:intergenic | 35.0% | |
| AAATGCTAACAAGTGACCTA+AGG | - | chr2_1:18249412-18249431 | None:intergenic | 35.0% | |
| TCCGTAATGTAGAATGTGAA+TGG | + | chr2_1:18249692-18249711 | Msa0199340:intron | 35.0% | |
| CCCATTCACATTCTACATTA+CGG | - | chr2_1:18249696-18249715 | None:intergenic | 35.0% | |
| CCGTAATGTAGAATGTGAAT+GGG | + | chr2_1:18249693-18249712 | Msa0199340:intron | 35.0% | |
| TTGTATGTTAGTCCTGGAAA+GGG | - | chr2_1:18249748-18249767 | None:intergenic | 35.0% | |
| ! | ATAATTTTCTTGCAGGGTAG+GGG | - | chr2_1:18249771-18249790 | None:intergenic | 35.0% |
| ! | GATAATTTTCTTGCAGGGTA+GGG | - | chr2_1:18249772-18249791 | None:intergenic | 35.0% |
| ! | TGATAATTTTCTTGCAGGGT+AGG | - | chr2_1:18249773-18249792 | None:intergenic | 35.0% |
| TAGTTACTGCTAGTATGCTA+TGG | + | chr2_1:18249936-18249955 | Msa0199340:intron | 35.0% | |
| TGCATCATAAGGCTTCAAAA+TGG | - | chr2_1:18250032-18250051 | None:intergenic | 35.0% | |
| AGCAACAAGAACTTCTAAAC+TGG | - | chr2_1:18250395-18250414 | None:intergenic | 35.0% | |
| CTTGCCTAATAAGAATGCAA+AGG | - | chr2_1:18250606-18250625 | None:intergenic | 35.0% | |
| TATCCCAGATGCATCTATAA+GGG | - | chr2_1:18250707-18250726 | None:intergenic | 35.0% | |
| ATATCCCAGATGCATCTATA+AGG | - | chr2_1:18250708-18250727 | None:intergenic | 35.0% | |
| ATAATTGGGATGTCCATCAA+CGG | + | chr2_1:18250826-18250845 | Msa0199340:CDS | 35.0% | |
| CCTATCCTAGAAACTACTTT+GGG | - | chr2_1:18251032-18251051 | None:intergenic | 35.0% | |
| TCCTATCCTAGAAACTACTT+TGG | - | chr2_1:18251033-18251052 | None:intergenic | 35.0% | |
| GTGTATTCTACTCTGCAATT+TGG | + | chr2_1:18251168-18251187 | Msa0199340:three_prime_UTR | 35.0% | |
| GAGACCTAATTGAGTGAGAT+AGG | - | chr2_1:18245613-18245632 | None:intergenic | 40.0% | |
| GTTAACTGCTTCTGTATCAC+TGG | + | chr2_1:18246233-18246252 | Msa0199340:intron | 40.0% | |
| ! | TCGCATTTTTATGCCAGCAT+AGG | + | chr2_1:18246822-18246841 | Msa0199340:intron | 40.0% |
| ! | GAAAACAGGCTTAGGTTGTT+TGG | + | chr2_1:18247127-18247146 | Msa0199340:intron | 40.0% |
| AGTGCGAAGAGTAAGTCATA+TGG | + | chr2_1:18247183-18247202 | Msa0199340:intron | 40.0% | |
| TAAGTCATATGGAGGAGAGT+CGG | + | chr2_1:18247194-18247213 | Msa0199340:intron | 40.0% | |
| AGTCGGATCAAAAAAGGTAG+AGG | + | chr2_1:18247211-18247230 | Msa0199340:intron | 40.0% | |
| AAACCTTATCCCACTAAGTG+GGG | - | chr2_1:18247353-18247372 | None:intergenic | 40.0% | |
| CAAACCTTATCCCACTAAGT+GGG | - | chr2_1:18247354-18247373 | None:intergenic | 40.0% | |
| CACACACACAGAATAGCATT+TGG | - | chr2_1:18247474-18247493 | None:intergenic | 40.0% | |
| AGTAGTGACACTATTTGTGG+TGG | + | chr2_1:18247532-18247551 | Msa0199340:intron | 40.0% | |
| GTCATCCACGAAGAAGTTAA+TGG | + | chr2_1:18247969-18247988 | Msa0199340:intron | 40.0% | |
| !!! | GAAAACGTTTTTTTGCCTGC+TGG | + | chr2_1:18248112-18248131 | Msa0199340:intron | 40.0% |
| ATCAATAGCCAAATTCCAGC+AGG | - | chr2_1:18248130-18248149 | None:intergenic | 40.0% | |
| GTACTCATGAACAGAACAAC+AGG | + | chr2_1:18248367-18248386 | Msa0199340:intron | 40.0% | |
| CAACTAGTGACAAAAGGCTT+TGG | - | chr2_1:18248545-18248564 | None:intergenic | 40.0% | |
| ! | CAAAGCCTTTTGTCACTAGT+TGG | + | chr2_1:18248543-18248562 | Msa0199340:intron | 40.0% |
| CAACACCAACTAGTGACAAA+AGG | - | chr2_1:18248551-18248570 | None:intergenic | 40.0% | |
| !! | CTTTTGTCACTAGTTGGTGT+TGG | + | chr2_1:18248549-18248568 | Msa0199340:intron | 40.0% |
| ACGATACATGATAGGACATC+GGG | - | chr2_1:18248595-18248614 | None:intergenic | 40.0% | |
| CACGATACATGATAGGACAT+CGG | - | chr2_1:18248596-18248615 | None:intergenic | 40.0% | |
| TGTCCTATCATGTATCGTGT+CGG | + | chr2_1:18248597-18248616 | Msa0199340:intron | 40.0% | |
| ! | GAATCATTGGTCTGTTCTTC+CGG | + | chr2_1:18248670-18248689 | Msa0199340:intron | 40.0% |
| AAGCATTAGTTAAGGAGGAC+CGG | - | chr2_1:18248692-18248711 | None:intergenic | 40.0% | |
| TGACACCTACAGGAATGATA+TGG | - | chr2_1:18248761-18248780 | None:intergenic | 40.0% | |
| ATGATTAGAGTGACACCTAC+AGG | - | chr2_1:18248771-18248790 | None:intergenic | 40.0% | |
| ! | AATTTTGTGAAGGATGGAGG+CGG | - | chr2_1:18248842-18248861 | None:intergenic | 40.0% |
| ! | GTAGCCAATTTTGTGAAGGA+TGG | - | chr2_1:18248848-18248867 | None:intergenic | 40.0% |
| !!! | AAATATCGGTGGTGGGTTTT+TGG | - | chr2_1:18248880-18248899 | None:intergenic | 40.0% |
| TGTTGTCAAATATCGGTGGT+GGG | - | chr2_1:18248887-18248906 | None:intergenic | 40.0% | |
| ACAGTGTTGTCAAATATCGG+TGG | - | chr2_1:18248891-18248910 | None:intergenic | 40.0% | |
| !! | CACACTTAAGGGAGTATTTC+GGG | - | chr2_1:18248974-18248993 | None:intergenic | 40.0% |
| !! | CCACACTTAAGGGAGTATTT+CGG | - | chr2_1:18248975-18248994 | None:intergenic | 40.0% |
| ! | TAACAAGTGCACGCTTGTTA+AGG | + | chr2_1:18249267-18249286 | Msa0199340:intron | 40.0% |
| ATTTCTAAACAAGCGCCCTT+AGG | + | chr2_1:18249393-18249412 | Msa0199340:intron | 40.0% | |
| GTTGTATGTTAGTCCTGGAA+AGG | - | chr2_1:18249749-18249768 | None:intergenic | 40.0% | |
| TGAAAACTAAGGTCTGTGTG+TGG | + | chr2_1:18249893-18249912 | Msa0199340:intron | 40.0% | |
| !!! | GGAACTTATTGCCGATTTTG+AGG | + | chr2_1:18250142-18250161 | Msa0199340:intron | 40.0% |
| CACAGAATCAGTTTCTTCGA+TGG | - | chr2_1:18250195-18250214 | None:intergenic | 40.0% | |
| TGATTCTGTGTGTTTATGGC+TGG | + | chr2_1:18250205-18250224 | Msa0199340:CDS | 40.0% | |
| GATTCTGTGTGTTTATGGCT+GGG | + | chr2_1:18250206-18250225 | Msa0199340:CDS | 40.0% | |
| TGCTCTTCTACAGAAAAACC+TGG | + | chr2_1:18250357-18250376 | Msa0199340:CDS | 40.0% | |
| AGACCTGAGTAATTGTCGTT+TGG | - | chr2_1:18250438-18250457 | None:intergenic | 40.0% | |
| TATGTTAACATCAGAGGGAG+AGG | + | chr2_1:18250521-18250540 | Msa0199340:intron | 40.0% | |
| ATGTTAACATCAGAGGGAGA+GGG | + | chr2_1:18250522-18250541 | Msa0199340:intron | 40.0% | |
| ! | AAATGTGCTGCTGCAGTTTA+TGG | - | chr2_1:18250574-18250593 | None:intergenic | 40.0% |
| ACACCCTTATAGATGCATCT+GGG | + | chr2_1:18250701-18250720 | Msa0199340:intron | 40.0% | |
| GACGCATAATCTAAGCTGAA+CGG | - | chr2_1:18250945-18250964 | None:intergenic | 40.0% | |
| GTTTGCCCAAAGTAGTTTCT+AGG | + | chr2_1:18251024-18251043 | Msa0199340:three_prime_UTR | 40.0% | |
| !! | CCCAAAGTAGTTTCTAGGAT+AGG | + | chr2_1:18251029-18251048 | Msa0199340:three_prime_UTR | 40.0% |
| CGATTGCAGTGCTTCAACAA+TGG | + | chr2_1:18245509-18245528 | Msa0199340:exon | 45.0% | |
| ACAGAACGAAGAGGAATACC+AGG | + | chr2_1:18245561-18245580 | Msa0199340:CDS | 45.0% | |
| ! | TCTGAAGTGTTATGGGGAGT+TGG | + | chr2_1:18245852-18245871 | Msa0199340:intron | 45.0% |
| CGACAAGTTAGTATCGTGTC+CGG | + | chr2_1:18245928-18245947 | Msa0199340:intron | 45.0% | |
| !! | CGAAGTACTGACATAGACAC+CGG | - | chr2_1:18245950-18245969 | None:intergenic | 45.0% |
| ! | GGTAGCTTGCAATGTGAATG+AGG | + | chr2_1:18246286-18246305 | Msa0199340:intron | 45.0% |
| TTGCAGGCTTCAGCAATACA+AGG | + | chr2_1:18246591-18246610 | Msa0199340:intron | 45.0% | |
| GCGAAGAGTAAGTCATATGG+AGG | + | chr2_1:18247186-18247205 | Msa0199340:intron | 45.0% | |
| GAGGAGAGTCGGATCAAAAA+AGG | + | chr2_1:18247205-18247224 | Msa0199340:intron | 45.0% | |
| CCAAACCTTATCCCACTAAG+TGG | - | chr2_1:18247355-18247374 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGGTT+TGG | + | chr2_1:18247352-18247371 | Msa0199340:intron | 45.0% | |
| ! | CACTATTTGTGGTGGTTTGC+AGG | + | chr2_1:18247540-18247559 | Msa0199340:intron | 45.0% |
| TGCGACTTTGCAAGCAAAGA+AGG | + | chr2_1:18247600-18247619 | Msa0199340:CDS | 45.0% | |
| GCGACTTTGCAAGCAAAGAA+GGG | + | chr2_1:18247601-18247620 | Msa0199340:CDS | 45.0% | |
| ! | ATGGCTGACCTTTTGTCTAG+AGG | + | chr2_1:18247882-18247901 | Msa0199340:intron | 45.0% |
| TCTTCGTGGATGACACAAAC+AGG | - | chr2_1:18247963-18247982 | None:intergenic | 45.0% | |
| TCGAGCCATTAACTTCTTCG+TGG | - | chr2_1:18247977-18247996 | None:intergenic | 45.0% | |
| GCATCGTGAAGTCCTAGAAA+AGG | + | chr2_1:18248296-18248315 | Msa0199340:intron | 45.0% | |
| CATCCGACACGATACATGAT+AGG | - | chr2_1:18248603-18248622 | None:intergenic | 45.0% | |
| GACTGCCATATCATTCCTGT+AGG | + | chr2_1:18248753-18248772 | Msa0199340:intron | 45.0% | |
| !!! | CAGTTTTTGGCTCTCTGTCA+TGG | - | chr2_1:18248810-18248829 | None:intergenic | 45.0% |
| GCCTCCATCCTTCACAAAAT+TGG | + | chr2_1:18248841-18248860 | Msa0199340:intron | 45.0% | |
| ! | GCCAATTTTGTGAAGGATGG+AGG | - | chr2_1:18248845-18248864 | None:intergenic | 45.0% |
| CTTCACAAAATTGGCTACGG+CGG | + | chr2_1:18248850-18248869 | Msa0199340:intron | 45.0% | |
| GTGTTGTCAAATATCGGTGG+TGG | - | chr2_1:18248888-18248907 | None:intergenic | 45.0% | |
| CCGAAATACTCCCTTAAGTG+TGG | + | chr2_1:18248972-18248991 | Msa0199340:intron | 45.0% | |
| TAGGTAAAATCGTCCAGAGG+GGG | - | chr2_1:18249507-18249526 | None:intergenic | 45.0% | |
| CTAGGTAAAATCGTCCAGAG+GGG | - | chr2_1:18249508-18249527 | None:intergenic | 45.0% | |
| GCTAGGTAAAATCGTCCAGA+GGG | - | chr2_1:18249509-18249528 | None:intergenic | 45.0% | |
| TGCTAGGTAAAATCGTCCAG+AGG | - | chr2_1:18249510-18249529 | None:intergenic | 45.0% | |
| AGAATGTGAATGGGTGTGCT+TGG | + | chr2_1:18249702-18249721 | Msa0199340:intron | 45.0% | |
| TAGGGGTTGTATGTTAGTCC+TGG | - | chr2_1:18249754-18249773 | None:intergenic | 45.0% | |
| TGCTAGTATGCTATGGACTC+TGG | + | chr2_1:18249943-18249962 | Msa0199340:intron | 45.0% | |
| GCCTTCTGACACCTCAAAAT+CGG | - | chr2_1:18250156-18250175 | None:intergenic | 45.0% | |
| GCTGGGAGCAAATGTTATGT+TGG | + | chr2_1:18250223-18250242 | Msa0199340:CDS | 45.0% | |
| !! | AACTGGCTCTAGCATTATCC+AGG | - | chr2_1:18250378-18250397 | None:intergenic | 45.0% |
| GGACCAAACGACAATTACTC+AGG | + | chr2_1:18250432-18250451 | Msa0199340:CDS | 45.0% | |
| TGTTAACATCAGAGGGAGAG+GGG | + | chr2_1:18250523-18250542 | Msa0199340:intron | 45.0% | |
| !! | TCTATAAGGGTGTCCATGGT+AGG | - | chr2_1:18250694-18250713 | None:intergenic | 45.0% |
| !! | TGCATCTATAAGGGTGTCCA+TGG | - | chr2_1:18250698-18250717 | None:intergenic | 45.0% |
| GACACCCTTATAGATGCATC+TGG | + | chr2_1:18250700-18250719 | Msa0199340:intron | 45.0% | |
| CTTGTTGAGTTCTCCGTTGA+TGG | - | chr2_1:18250842-18250861 | None:intergenic | 45.0% | |
| TTCCTTCCTGTCTGTAGTTC+TGG | + | chr2_1:18251002-18251021 | Msa0199340:three_prime_UTR | 45.0% | |
| AACCAGAACTACAGACAGGA+AGG | - | chr2_1:18251007-18251026 | None:intergenic | 45.0% | |
| TCAGCAGTGACAGAACGAAG+AGG | + | chr2_1:18245552-18245571 | Msa0199340:CDS | 50.0% | |
| TCTTCAACGAACTGAGCACC+TGG | - | chr2_1:18245582-18245601 | None:intergenic | 50.0% | |
| TTTATGCCAGCATAGGCTGC+TGG | + | chr2_1:18246829-18246848 | Msa0199340:intron | 50.0% | |
| GGTTGTTTGGGCATGTAGAG+AGG | + | chr2_1:18247140-18247159 | Msa0199340:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr2_1:18247349-18247368 | None:intergenic | 50.0% | |
| ! | TTGCAAGCAAAGAAGGGCAC+CGG | + | chr2_1:18247607-18247626 | Msa0199340:CDS | 50.0% |
| AGTCCTCAAACGAACCTCAC+CGG | - | chr2_1:18247629-18247648 | None:intergenic | 50.0% | |
| ! | GAGTTGGACATGGGTTGAGA+CGG | - | chr2_1:18248722-18248741 | None:intergenic | 50.0% |
| ! | GCGGCTGGTATGACAGTTTT+TGG | - | chr2_1:18248823-18248842 | None:intergenic | 50.0% |
| ! | CGCCGTAGCCAATTTTGTGA+AGG | - | chr2_1:18248852-18248871 | None:intergenic | 50.0% |
| TTATTGCATCATCCCCCCTC+TGG | + | chr2_1:18249491-18249510 | Msa0199340:intron | 50.0% | |
| AGGTAAAATCGTCCAGAGGG+GGG | - | chr2_1:18249506-18249525 | None:intergenic | 50.0% | |
| TGTTAGTCCTGGAAAGGGTG+CGG | - | chr2_1:18249743-18249762 | None:intergenic | 50.0% | |
| !!! | GCCGATTTTGAGGTGTCAGA+AGG | + | chr2_1:18250152-18250171 | Msa0199340:CDS | 50.0% |
| GGCAAACCAGAACTACAGAC+AGG | - | chr2_1:18251011-18251030 | None:intergenic | 50.0% | |
| TTTCAGCCAGCAGCCTATGC+TGG | - | chr2_1:18246838-18246857 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr2_1:18247341-18247360 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr2_1:18247340-18247359 | Msa0199340:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr2_1:18247341-18247360 | Msa0199340:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr2_1:18247347-18247366 | Msa0199340:intron | 55.0% | |
| CATGGTAGGCATGAAGCTGG+AGG | - | chr2_1:18250680-18250699 | None:intergenic | 55.0% | |
| CTCCAGCTTCATGCCTACCA+TGG | + | chr2_1:18250678-18250697 | Msa0199340:intron | 55.0% | |
| GTCCATGGTAGGCATGAAGC+TGG | - | chr2_1:18250683-18250702 | None:intergenic | 55.0% | |
| TGAAGCTCCTCGCGCAGCAA+AGG | + | chr2_1:18246623-18246642 | Msa0199340:CDS | 60.0% | |
| GAAGCTCCTCGCGCAGCAAA+GGG | + | chr2_1:18246624-18246643 | Msa0199340:CDS | 60.0% | |
| GAAGTTCCCTTTGCTGCGCG+AGG | - | chr2_1:18246633-18246652 | None:intergenic | 60.0% | |
| CGCGCAGCAAAGGGAACTTC+AGG | + | chr2_1:18246633-18246652 | Msa0199340:CDS | 60.0% | |
| !! | AGCAAAGAAGGGCACCGGTG+AGG | + | chr2_1:18247612-18247631 | Msa0199340:CDS | 60.0% |
| ! | GCACCGGTGAGGTTCGTTTG+AGG | + | chr2_1:18247623-18247642 | Msa0199340:intron | 60.0% |
| TTGTGAAGGATGGAGGCGGC+TGG | - | chr2_1:18248838-18248857 | None:intergenic | 60.0% | |
| GTTCAAGCCGCACCCTTTCC+AGG | + | chr2_1:18249733-18249752 | Msa0199340:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 18245420 | 18251218 | 18245420 | ID=Msa0199340;Name=Msa0199340 |
| chr2_1 | mRNA | 18245420 | 18251218 | 18245420 | ID=Msa0199340-mRNA-1;Parent=Msa0199340;Name=Msa0199340-mRNA-1;_AED=0.08;_eAED=0.08;_QI=108|1|1|1|1|1|6|325|192 |
| chr2_1 | exon | 18245420 | 18245667 | 18245420 | ID=Msa0199340-mRNA-1:exon:7721;Parent=Msa0199340-mRNA-1 |
| chr2_1 | exon | 18246597 | 18246654 | 18246597 | ID=Msa0199340-mRNA-1:exon:7722;Parent=Msa0199340-mRNA-1 |
| chr2_1 | exon | 18247562 | 18247633 | 18247562 | ID=Msa0199340-mRNA-1:exon:7723;Parent=Msa0199340-mRNA-1 |
| chr2_1 | exon | 18250143 | 18250262 | 18250143 | ID=Msa0199340-mRNA-1:exon:7724;Parent=Msa0199340-mRNA-1 |
| chr2_1 | exon | 18250352 | 18250453 | 18250352 | ID=Msa0199340-mRNA-1:exon:7725;Parent=Msa0199340-mRNA-1 |
| chr2_1 | exon | 18250807 | 18251218 | 18250807 | ID=Msa0199340-mRNA-1:exon:7726;Parent=Msa0199340-mRNA-1 |
| chr2_1 | five_prime_UTR | 18245420 | 18245527 | 18245420 | ID=Msa0199340-mRNA-1:five_prime_utr;Parent=Msa0199340-mRNA-1 |
| chr2_1 | CDS | 18245528 | 18245667 | 18245528 | ID=Msa0199340-mRNA-1:cds;Parent=Msa0199340-mRNA-1 |
| chr2_1 | CDS | 18246597 | 18246654 | 18246597 | ID=Msa0199340-mRNA-1:cds;Parent=Msa0199340-mRNA-1 |
| chr2_1 | CDS | 18247562 | 18247633 | 18247562 | ID=Msa0199340-mRNA-1:cds;Parent=Msa0199340-mRNA-1 |
| chr2_1 | CDS | 18250143 | 18250262 | 18250143 | ID=Msa0199340-mRNA-1:cds;Parent=Msa0199340-mRNA-1 |
| chr2_1 | CDS | 18250352 | 18250453 | 18250352 | ID=Msa0199340-mRNA-1:cds;Parent=Msa0199340-mRNA-1 |
| chr2_1 | CDS | 18250807 | 18250893 | 18250807 | ID=Msa0199340-mRNA-1:cds;Parent=Msa0199340-mRNA-1 |
| chr2_1 | three_prime_UTR | 18250894 | 18251218 | 18250894 | ID=Msa0199340-mRNA-1:three_prime_utr;Parent=Msa0199340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
