Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269790 | sp|P57741|PFD3_ARATH | 70.930 | 172 | 26 | 1 | 11 | 158 | 13 | 184 | 5.93e-83 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269790 | G7IMS6 | 87.500 | 192 | 0 | 1 | 1 | 168 | 1 | 192 | 4.32e-111 | 323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037250 | Msa1269790 | 0.832946 | 7.072559e-56 | -8.615850e-47 |
| Msa0044990 | Msa1269790 | 0.831235 | 1.872345e-55 | -8.615850e-47 |
| Msa0056430 | Msa1269790 | 0.812416 | 4.285653e-51 | -8.615850e-47 |
| Msa0056470 | Msa1269790 | 0.820401 | 6.992779e-53 | -8.615850e-47 |
| Msa0072420 | Msa1269790 | 0.803977 | 2.694498e-49 | -8.615850e-47 |
| Msa0115870 | Msa1269790 | 0.856414 | 3.268986e-62 | -8.615850e-47 |
| Msa0615990 | Msa1269790 | 0.815776 | 7.775148e-52 | -8.615850e-47 |
| Msa0651050 | Msa1269790 | 0.848625 | 5.441591e-60 | -8.615850e-47 |
| Msa0698780 | Msa1269790 | 0.844803 | 6.027341e-59 | -8.615850e-47 |
| Msa0820650 | Msa1269790 | 0.802711 | 4.927782e-49 | -8.615850e-47 |
| Msa0140850 | Msa1269790 | 0.857815 | 1.262368e-62 | -8.615850e-47 |
| Msa0149200 | Msa1269790 | 0.824592 | 7.426586e-54 | -8.615850e-47 |
| Msa0159440 | Msa1269790 | 0.812619 | 3.869828e-51 | -8.615850e-47 |
| Msa0199340 | Msa1269790 | 0.850069 | 2.154525e-60 | -8.615850e-47 |
| Msa0199620 | Msa1269790 | 0.859470 | 4.046097e-63 | -8.615850e-47 |
| Msa1269790 | Msa1341060 | 0.803298 | 3.726696e-49 | -8.615850e-47 |
| Msa1269790 | Msa1362210 | 0.828093 | 1.088825e-54 | -8.615850e-47 |
| Msa1269790 | Msa1413260 | 0.825446 | 4.668191e-54 | -8.615850e-47 |
| Msa1269790 | Msa1418340 | 0.808690 | 2.736514e-50 | -8.615850e-47 |
| Msa1269790 | Msa1420430 | 0.843985 | 1.000482e-58 | -8.615850e-47 |
| Msa1269790 | Msa1425670 | 0.808343 | 3.244366e-50 | -8.615850e-47 |
| Msa1269790 | Msa1445370 | 0.844290 | 8.287411e-59 | -8.615850e-47 |
| Msa1269790 | Msa1456050 | 0.802748 | 4.842984e-49 | -8.615850e-47 |
| Msa0425640 | Msa1269790 | 0.814265 | 1.682099e-51 | -8.615850e-47 |
| Msa0427150 | Msa1269790 | 0.801702 | 7.947802e-49 | -8.615850e-47 |
| Msa0432210 | Msa1269790 | 0.803515 | 3.360767e-49 | -8.615850e-47 |
| Msa0319640 | Msa1269790 | 0.855199 | 7.404926e-62 | -8.615850e-47 |
| Msa1130980 | Msa1269790 | 0.810438 | 1.152938e-50 | -8.615850e-47 |
| Msa1165230 | Msa1269790 | 0.808084 | 3.684793e-50 | -8.615850e-47 |
| Msa1165940 | Msa1269790 | 0.800578 | 1.349831e-48 | -8.615850e-47 |
| Msa0521050 | Msa1269790 | 0.833533 | 5.048482e-56 | -8.615850e-47 |
| Msa0531530 | Msa1269790 | 0.805554 | 1.262342e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269790 | MtrunA17_Chr2g0294251 | 87.500 | 192 | 0 | 1 | 1 | 168 | 1 | 192 | 8.32e-115 | 323 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1269790 | AT5G49510.2 | 70.930 | 172 | 26 | 1 | 11 | 158 | 13 | 184 | 6.02e-84 | 246 |
| Msa1269790 | AT5G49510.1 | 70.930 | 172 | 26 | 1 | 11 | 158 | 13 | 184 | 6.02e-84 | 246 |
Find 40 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTGATTCTGTGTGTTTA+TGG | 0.168432 | 8_3:-3039212 | Msa1269790:CDS |
| CAATTGCTCGTGTTTATAAT+TGG | 0.169849 | 8_3:-3038602 | Msa1269790:CDS |
| TGATTATGATTATGATTTCT+TGG | 0.235794 | 8_3:-3038325 | Msa1269790:three_prime_UTR |
| TTCCTTCCTGTCTGTAGTTC+TGG | 0.239248 | 8_3:-3038411 | Msa1269790:three_prime_UTR |
| GTTTGCCCAAAGTAGTTTCT+AGG | 0.258157 | 8_3:-3038389 | Msa1269790:three_prime_UTR |
| CTTGTTGAGTTCTCCGTTGA+TGG | 0.269073 | 8_3:+3038574 | None:intergenic |
| CAAACCTATCTCACTCAATT+AGG | 0.296890 | 8_3:-3043824 | Msa1269790:CDS |
| GTGTATTCTACTCTGCAATT+TGG | 0.355142 | 8_3:-3038245 | Msa1269790:three_prime_UTR |
| AATTGCTCGTGTTTATAATT+GGG | 0.358053 | 8_3:-3038601 | Msa1269790:CDS |
| TTTCTAATGTAAGTCAAAGT+TGG | 0.363552 | 8_3:-3044005 | Msa1269790:five_prime_UTR |
| TTCTAATGTAAGTCAAAGTT+GGG | 0.391809 | 8_3:-3044004 | Msa1269790:five_prime_UTR |
| AGCAACAAGAACTTCTAAAC+TGG | 0.406664 | 8_3:+3039021 | None:intergenic |
| GAGACCTAATTGAGTGAGAT+AGG | 0.406753 | 8_3:+3043820 | None:intergenic |
| CGCGCAGCAAAGGGAACTTC+AGG | 0.407214 | 8_3:-3042808 | Msa1269790:intron |
| TGATTCTGTGTGTTTATGGC+TGG | 0.425847 | 8_3:-3039208 | Msa1269790:CDS |
| GCCTTCTGACACCTCAAAAT+CGG | 0.428491 | 8_3:+3039260 | None:intergenic |
| CCTATCCTAGAAACTACTTT+GGG | 0.439541 | 8_3:+3038384 | None:intergenic |
| TCCTATCCTAGAAACTACTT+TGG | 0.458624 | 8_3:+3038383 | None:intergenic |
| AGACCTGAGTAATTGTCGTT+TGG | 0.476174 | 8_3:+3038978 | None:intergenic |
| AACTGGCTCTAGCATTATCC+AGG | 0.479058 | 8_3:+3039038 | None:intergenic |
| CCCAAAGTAGTTTCTAGGAT+AGG | 0.497185 | 8_3:-3038384 | Msa1269790:three_prime_UTR |
| TGAAGCTCCTCGCGCAGCAA+AGG | 0.498907 | 8_3:-3042818 | Msa1269790:CDS |
| TTGCAGGCTTCAGCAATACA+AGG | 0.499475 | 8_3:-3042850 | Msa1269790:intron |
| GATTCTGTGTGTTTATGGCT+GGG | 0.504747 | 8_3:-3039207 | Msa1269790:CDS |
| GAAGCTCCTCGCGCAGCAAA+GGG | 0.509666 | 8_3:-3042817 | Msa1269790:CDS |
| CGATTGCAGTGCTTCAACAA+TGG | 0.524135 | 8_3:-3043921 | Msa1269790:exon |
| TTTGTCTTGTATGATCATAC+GGG | 0.549051 | 8_3:-3038267 | Msa1269790:three_prime_UTR |
| GAAGTTCCCTTTGCTGCGCG+AGG | 0.553650 | 8_3:+3042811 | None:intergenic |
| CACAGAATCAGTTTCTTCGA+TGG | 0.555916 | 8_3:+3039221 | None:intergenic |
| GTTGGAATATTCATTAGAAG+AGG | 0.558241 | 8_3:-3039172 | Msa1269790:intron |
| GCTGGGAGCAAATGTTATGT+TGG | 0.581899 | 8_3:-3039190 | Msa1269790:CDS |
| TCTTCAACGAACTGAGCACC+TGG | 0.598579 | 8_3:+3043851 | None:intergenic |
| AACCAGAACTACAGACAGGA+AGG | 0.605903 | 8_3:+3038409 | None:intergenic |
| GGCAAACCAGAACTACAGAC+AGG | 0.611996 | 8_3:+3038405 | None:intergenic |
| TTCTTCGTCTTCATCATCAG+CGG | 0.634937 | 8_3:-3043894 | Msa1269790:CDS |
| ATAATTGGGATGTCCATCAA+CGG | 0.640983 | 8_3:-3038587 | Msa1269790:CDS |
| ACAGAACGAAGAGGAATACC+AGG | 0.644106 | 8_3:-3043869 | Msa1269790:CDS |
| GGACCAAACGACAATTACTC+AGG | 0.647185 | 8_3:-3038981 | Msa1269790:intron |
| GACGCATAATCTAAGCTGAA+CGG | 0.653616 | 8_3:+3038471 | None:intergenic |
| TCAGCGGTGACAGAACGAAG+AGG | 0.716817 | 8_3:-3043878 | Msa1269790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATATTATTATATATA+TGG | - | chr8_3:3042312-3042331 | Msa1269790:intron | 0.0% |
| !!! | TTATCTATATTTTTTATGAA+TGG | - | chr8_3:3039172-3039191 | Msa1269790:intron | 10.0% |
| !!! | AATTTATTTTATGCTTTAAA+GGG | - | chr8_3:3039300-3039319 | Msa1269790:intron | 10.0% |
| !! | AATAAATCCTATTAATATAA+GGG | - | chr8_3:3042079-3042098 | Msa1269790:intron | 10.0% |
| !! | TCAATCTTTAAATATATTAA+GGG | + | chr8_3:3042275-3042294 | None:intergenic | 10.0% |
| !! | ATCAATCTTTAAATATATTA+AGG | + | chr8_3:3042276-3042295 | None:intergenic | 10.0% |
| !!! | ATATATTTAACTTATTTTGA+AGG | + | chr8_3:3042366-3042385 | None:intergenic | 10.0% |
| !!! | ATATACTTTATTTTTTTCAA+AGG | - | chr8_3:3042400-3042419 | Msa1269790:intron | 10.0% |
| !!! | TATACTTTATTTTTTTCAAA+GGG | - | chr8_3:3042401-3042420 | Msa1269790:intron | 10.0% |
| !! | TGTAGTAAATAAATTTAAAA+TGG | + | chr8_3:3042880-3042899 | None:intergenic | 10.0% |
| !! | AATGCAAAAAATAAAATAAA+AGG | + | chr8_3:3043553-3043572 | None:intergenic | 10.0% |
| !! | ACATATATATAAAAAAGAAA+TGG | + | chr8_3:3043871-3043890 | None:intergenic | 10.0% |
| !!! | ATTTCATAATGAAGTAATTT+TGG | - | chr8_3:3038982-3039001 | Msa1269790:CDS | 15.0% |
| !!! | GAATTTATTTTATGCTTTAA+AGG | - | chr8_3:3039299-3039318 | Msa1269790:intron | 15.0% |
| !!! | ATTTATTTTATGCTTTAAAG+GGG | - | chr8_3:3039301-3039320 | Msa1269790:intron | 15.0% |
| !!! | TCTCTTAATAGTTTTTTTAT+AGG | + | chr8_3:3040031-3040050 | None:intergenic | 15.0% |
| !!! | AATTTTAGATAAAACGTTTT+TGG | - | chr8_3:3040513-3040532 | Msa1269790:intron | 15.0% |
| !!! | TTTAGGATTTTATTATCTTA+AGG | + | chr8_3:3041937-3041956 | None:intergenic | 15.0% |
| !!! | TCTATTACTTTAATTTGTTT+AGG | + | chr8_3:3041954-3041973 | None:intergenic | 15.0% |
| !! | AAGATTATACTGTTTAATTA+GGG | + | chr8_3:3041986-3042005 | None:intergenic | 15.0% |
| !! | TAAGATTATACTGTTTAATT+AGG | + | chr8_3:3041987-3042006 | None:intergenic | 15.0% |
| !! | CAATAAATCCTATTAATATA+AGG | - | chr8_3:3042078-3042097 | Msa1269790:intron | 15.0% |
| !!! | ATACTTTATTTTTTTCAAAG+GGG | - | chr8_3:3042402-3042421 | Msa1269790:intron | 15.0% |
| !!! | ATAACATTATATTTTGTCAA+TGG | - | chr8_3:3042620-3042639 | Msa1269790:intron | 15.0% |
| !! | AATTCATCAAAATTAAAAAC+TGG | + | chr8_3:3043792-3043811 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTTGATGAATTG+TGG | - | chr8_3:3043793-3043812 | Msa1269790:CDS | 15.0% |
| !!! | AAACATTTTTGTATAATTGA+TGG | - | chr8_3:3043931-3043950 | Msa1269790:five_prime_UTR | 15.0% |
| !!! | AACATTTTTGTATAATTGAT+GGG | - | chr8_3:3043932-3043951 | Msa1269790:five_prime_UTR | 15.0% |
| !!! | TTCTCAAAATCTCATTTTTA+TGG | - | chr8_3:3038494-3038513 | Msa1269790:three_prime_UTR | 20.0% |
| !! | TTCATTTCTATAGTTTAGTT+TGG | - | chr8_3:3038565-3038584 | Msa1269790:CDS | 20.0% |
| !!! | AAGTTTTTTATGAAGTGTAT+GGG | - | chr8_3:3038640-3038659 | Msa1269790:intron | 20.0% |
| !!! | GTAAAGTATTAAGATGAAAA+GGG | - | chr8_3:3038792-3038811 | Msa1269790:intron | 20.0% |
| !!! | GAAAATTTTGGTTTGAATTT+CGG | - | chr8_3:3038900-3038919 | Msa1269790:intron | 20.0% |
| !! | GCATATTATACTTTATCTTT+AGG | - | chr8_3:3039457-3039476 | Msa1269790:intron | 20.0% |
| !! | TAGTTTGATTGAAGATAAAA+AGG | - | chr8_3:3039504-3039523 | Msa1269790:intron | 20.0% |
| !! | AATTACCTTTCTAATTGATT+TGG | - | chr8_3:3039862-3039881 | Msa1269790:intron | 20.0% |
| !!! | ATTACCTTTCTAATTGATTT+GGG | - | chr8_3:3039863-3039882 | Msa1269790:intron | 20.0% |
| !! | AACTATTAAGAGAAACTATT+AGG | - | chr8_3:3040038-3040057 | Msa1269790:intron | 20.0% |
| !!! | GAAATTTTGTGCATTTTATT+TGG | - | chr8_3:3040590-3040609 | Msa1269790:intron | 20.0% |
| !! | AAATTCAACAATTAAACATG+GGG | + | chr8_3:3040842-3040861 | None:intergenic | 20.0% |
| !! | GAAATTCAACAATTAAACAT+GGG | + | chr8_3:3040843-3040862 | None:intergenic | 20.0% |
| !! | TGAAATTCAACAATTAAACA+TGG | + | chr8_3:3040844-3040863 | None:intergenic | 20.0% |
| !!! | TAAACAAAAAATCCTTTTCT+AGG | + | chr8_3:3041151-3041170 | None:intergenic | 20.0% |
| !! | TTGTTCATTATTTATTAGCT+AGG | - | chr8_3:3041233-3041252 | Msa1269790:intron | 20.0% |
| !! | TAAATTCAAATGCTTCTTAA+TGG | - | chr8_3:3041473-3041492 | Msa1269790:intron | 20.0% |
| !! | GCTTGTTTAAATATATAAAG+AGG | + | chr8_3:3042227-3042246 | None:intergenic | 20.0% |
| !! | TTTCAAATGTTTGAATGTTA+TGG | - | chr8_3:3042436-3042455 | Msa1269790:intron | 20.0% |
| !!! | ATATAAAAGTACTACATGTA+AGG | + | chr8_3:3042679-3042698 | None:intergenic | 20.0% |
| !! | ATTAGTTACATTGAAAACTA+AGG | - | chr8_3:3042697-3042716 | Msa1269790:intron | 20.0% |
| !!! | TTTTAAATAGTTGCATCATA+AGG | + | chr8_3:3042857-3042876 | None:intergenic | 20.0% |
| !! | TGTAAGTTAAAATTTAACAG+AGG | + | chr8_3:3043119-3043138 | None:intergenic | 20.0% |
| !! | TAAATTTATGTTAACATCAG+AGG | - | chr8_3:3043329-3043348 | Msa1269790:intron | 20.0% |
| !! | AAATTTATGTTAACATCAGA+GGG | - | chr8_3:3043330-3043349 | Msa1269790:intron | 20.0% |
| !!! | TATTGATTGTATATGTTATC+AGG | - | chr8_3:3043599-3043618 | Msa1269790:intron | 20.0% |
| !! | TGATTATGATTATGATTTCT+TGG | - | chr8_3:3043902-3043921 | Msa1269790:CDS | 20.0% |
| ! | TTTCTAATGTAAGTCAAAGT+TGG | - | chr8_3:3038222-3038241 | Msa1269790:three_prime_UTR | 25.0% |
| ! | TTCTAATGTAAGTCAAAGTT+GGG | - | chr8_3:3038223-3038242 | Msa1269790:three_prime_UTR | 25.0% |
| !!! | ATTTGTTGTCGTTTTGTTTT+GGG | + | chr8_3:3038260-3038279 | None:intergenic | 25.0% |
| !!! | TATTTGTTGTCGTTTTGTTT+TGG | + | chr8_3:3038261-3038280 | None:intergenic | 25.0% |
| !!! | CAAGTTTTTTATGAAGTGTA+TGG | - | chr8_3:3038639-3038658 | Msa1269790:intron | 25.0% |
| !!! | AGTTTTTTATGAAGTGTATG+GGG | - | chr8_3:3038641-3038660 | Msa1269790:intron | 25.0% |
| !!! | TATGGCATTTTAGTACTTTA+TGG | - | chr8_3:3038675-3038694 | Msa1269790:intron | 25.0% |
| !! | AATTACTAACAGTAGGTTTT+AGG | - | chr8_3:3038770-3038789 | Msa1269790:intron | 25.0% |
| !! | GGTAAAGTATTAAGATGAAA+AGG | - | chr8_3:3038791-3038810 | Msa1269790:intron | 25.0% |
| ! | AATGTGATTATGAGGTAAAT+TGG | - | chr8_3:3038835-3038854 | Msa1269790:intron | 25.0% |
| ! | GAGGTAAATTGGATTAATAT+AGG | - | chr8_3:3038846-3038865 | Msa1269790:intron | 25.0% |
| !! | ATTACAGTCTTCGAAAATTT+TGG | - | chr8_3:3038888-3038907 | Msa1269790:intron | 25.0% |
| !! | GAAAATTTGTGATTTTGGAT+TGG | - | chr8_3:3038931-3038950 | Msa1269790:intron | 25.0% |
| ! | TATAGTTAGATTAGTGAATG+AGG | - | chr8_3:3039052-3039071 | Msa1269790:CDS | 25.0% |
| ! | CAACTATTAATAACAAAGCA+AGG | + | chr8_3:3039222-3039241 | None:intergenic | 25.0% |
| ! | TTTGCAAGTTAATATTGCAT+TGG | - | chr8_3:3039262-3039281 | Msa1269790:CDS | 25.0% |
| ! | CAAACTATTAACAAACTACA+AGG | + | chr8_3:3039491-3039510 | None:intergenic | 25.0% |
| ! | TTGAAATCTTAAAATGCCAT+TGG | + | chr8_3:3039564-3039583 | None:intergenic | 25.0% |
| !!! | CATTTTAAGATTTCAACTTC+TGG | - | chr8_3:3039568-3039587 | Msa1269790:intron | 25.0% |
| !!! | TTACCTTTCTAATTGATTTG+GGG | - | chr8_3:3039864-3039883 | Msa1269790:intron | 25.0% |
| !! | TCTAACATCTTTTCTACTAT+AGG | + | chr8_3:3039895-3039914 | None:intergenic | 25.0% |
| ! | TAGAAAAGATGTTAGAAAAC+AGG | - | chr8_3:3039899-3039918 | Msa1269790:intron | 25.0% |
| !! | GTTGTTTGTTTGTTCTATTT+TGG | - | chr8_3:3040209-3040228 | Msa1269790:intron | 25.0% |
| !! | ATCTAAGCACTTTTCAATAT+CGG | + | chr8_3:3040408-3040427 | None:intergenic | 25.0% |
| ! | TATCTTTCAAATGTTCAGAT+TGG | - | chr8_3:3040541-3040560 | Msa1269790:intron | 25.0% |
| ! | ATATACAAGCACTAATTACA+TGG | - | chr8_3:3040699-3040718 | Msa1269790:intron | 25.0% |
| ! | AATTCAACAATTAAACATGG+GGG | + | chr8_3:3040841-3040860 | None:intergenic | 25.0% |
| ! | AGATGATGAATCAACTATTA+GGG | + | chr8_3:3041000-3041019 | None:intergenic | 25.0% |
| ! | TAGAACTACATCTTTATGTT+GGG | + | chr8_3:3041075-3041094 | None:intergenic | 25.0% |
| ! | TTAGAACTACATCTTTATGT+TGG | + | chr8_3:3041076-3041095 | None:intergenic | 25.0% |
| ! | AGTATTATCCAATTCTAACT+TGG | - | chr8_3:3041834-3041853 | Msa1269790:intron | 25.0% |
| ! | TTATACTGTTTAATTAGGGT+AGG | + | chr8_3:3041982-3042001 | None:intergenic | 25.0% |
| ! | GCAGTAACTATTGTATAAAA+AGG | + | chr8_3:3042741-3042760 | None:intergenic | 25.0% |
| !! | GAATTGATAATCGTTACTTA+GGG | + | chr8_3:3042786-3042805 | None:intergenic | 25.0% |
| !! | TTTTACTACACAAAATGATG+AGG | + | chr8_3:3042808-3042827 | None:intergenic | 25.0% |
| !! | AGAAGATTTATGTTTGACTT+TGG | - | chr8_3:3042928-3042947 | Msa1269790:intron | 25.0% |
| ! | TGTGAAAAGCAAAAAAAATG+AGG | + | chr8_3:3043294-3043313 | None:intergenic | 25.0% |
| ! | AATTGCTCGTGTTTATAATT+GGG | - | chr8_3:3043626-3043645 | Msa1269790:intron | 25.0% |
| !! | TTTTGTCTTGTATGATCATA+CGG | - | chr8_3:3043959-3043978 | Msa1269790:five_prime_UTR | 25.0% |
| CGTAGATAATTACTAACAGT+AGG | - | chr8_3:3038763-3038782 | Msa1269790:intron | 30.0% | |
| AGTATTAAGATGAAAAGGGA+TGG | - | chr8_3:3038796-3038815 | Msa1269790:intron | 30.0% | |
| TTCAACTGAATGTGATTATG+AGG | - | chr8_3:3038827-3038846 | Msa1269790:intron | 30.0% | |
| ! | GGTGAGAAAATTTGTGATTT+TGG | - | chr8_3:3038926-3038945 | Msa1269790:intron | 30.0% |
| ! | GTACTTAGATTTTCATTCTC+TGG | - | chr8_3:3039113-3039132 | Msa1269790:intron | 30.0% |
| TTGAAACTAGAAAGAACCAA+TGG | - | chr8_3:3039545-3039564 | Msa1269790:intron | 30.0% | |
| ! | TAAGATTTCAACTTCTGGAA+AGG | - | chr8_3:3039573-3039592 | Msa1269790:intron | 30.0% |
| ! | AGCAGTAAACTCTATGTTTT+GGG | - | chr8_3:3039646-3039665 | Msa1269790:intron | 30.0% |
| !!! | TTTCGTTTTGAAAACATGCA+TGG | - | chr8_3:3039698-3039717 | Msa1269790:intron | 30.0% |
| !!! | TTCGTTTTGAAAACATGCAT+GGG | - | chr8_3:3039699-3039718 | Msa1269790:intron | 30.0% |
| TTAAACAAGACTAGACAGTT+TGG | - | chr8_3:3039723-3039742 | Msa1269790:intron | 30.0% | |
| AAAATGCAACAACTTTGGAT+TGG | + | chr8_3:3039792-3039811 | None:intergenic | 30.0% | |
| AGATTTAGACGTTAATGAGT+TGG | - | chr8_3:3040063-3040082 | Msa1269790:intron | 30.0% | |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr8_3:3040075-3040094 | Msa1269790:intron | 30.0% |
| GTTCTATCACAAACCATATT+TGG | + | chr8_3:3040091-3040110 | None:intergenic | 30.0% | |
| ! | TGGTTTGTGATAGAACATTA+TGG | - | chr8_3:3040095-3040114 | Msa1269790:intron | 30.0% |
| CTATTTACTACATCCTTAAG+AGG | - | chr8_3:3040660-3040679 | Msa1269790:intron | 30.0% | |
| AGAAAAGAAAATTGAAGGCA+TGG | + | chr8_3:3040911-3040930 | None:intergenic | 30.0% | |
| ! | ATGCCTTCAATTTTCTTTTC+TGG | - | chr8_3:3040910-3040929 | Msa1269790:intron | 30.0% |
| ! | TGCCTTCAATTTTCTTTTCT+GGG | - | chr8_3:3040911-3040930 | Msa1269790:intron | 30.0% |
| TACCCAGAAAAGAAAATTGA+AGG | + | chr8_3:3040916-3040935 | None:intergenic | 30.0% | |
| GATGATGAATCAACTATTAG+GGG | + | chr8_3:3040999-3041018 | None:intergenic | 30.0% | |
| GAGATGATGAATCAACTATT+AGG | + | chr8_3:3041001-3041020 | None:intergenic | 30.0% | |
| ! | AGTTCTAACTAGAAGAGTTT+AGG | + | chr8_3:3041286-3041305 | None:intergenic | 30.0% |
| TTCACTATACCTTGAATCAT+TGG | - | chr8_3:3041497-3041516 | Msa1269790:intron | 30.0% | |
| AACACAGTGTTGTCAAATAT+CGG | + | chr8_3:3041733-3041752 | None:intergenic | 30.0% | |
| AATGGGAGTTAATTCTACAT+TGG | + | chr8_3:3041783-3041802 | None:intergenic | 30.0% | |
| !! | GTATTTCGGGTTTCTTTAAT+GGG | + | chr8_3:3041800-3041819 | None:intergenic | 30.0% |
| !! | AGTATTTCGGGTTTCTTTAA+TGG | + | chr8_3:3041801-3041820 | None:intergenic | 30.0% |
| AACATTGTCCAAGTTAGAAT+TGG | + | chr8_3:3041845-3041864 | None:intergenic | 30.0% | |
| TCAAAGTCCTCCATTAAATA+AGG | - | chr8_3:3041892-3041911 | Msa1269790:intron | 30.0% | |
| !! | TAAGATGCCTTATTTAATGG+AGG | + | chr8_3:3041902-3041921 | None:intergenic | 30.0% |
| !! | CCTTAAGATGCCTTATTTAA+TGG | + | chr8_3:3041905-3041924 | None:intergenic | 30.0% |
| ! | CCATTAAATAAGGCATCTTA+AGG | - | chr8_3:3041902-3041921 | Msa1269790:intron | 30.0% |
| AGCATGACCCTTATATTAAT+AGG | + | chr8_3:3042089-3042108 | None:intergenic | 30.0% | |
| ! | GCTTGTTAAGGATTCAAAAA+TGG | - | chr8_3:3042120-3042139 | Msa1269790:intron | 30.0% |
| ! | ATAAAGAGGACGTTTTATCT+TGG | + | chr8_3:3042213-3042232 | None:intergenic | 30.0% |
| ! | CTCAAATTTGCATCTTGTTT+AGG | - | chr8_3:3042464-3042483 | Msa1269790:intron | 30.0% |
| ATTACGGATGTAACATCATT+TGG | + | chr8_3:3042495-3042514 | None:intergenic | 30.0% | |
| !!! | GTGTTGATAATTTTCTTGCA+GGG | + | chr8_3:3042592-3042611 | None:intergenic | 30.0% |
| !!! | AGTGTTGATAATTTTCTTGC+AGG | + | chr8_3:3042593-3042612 | None:intergenic | 30.0% |
| ! | GGAATTGATAATCGTTACTT+AGG | + | chr8_3:3042787-3042806 | None:intergenic | 30.0% |
| ! | TTATGTTTGACTTTGGATAC+AGG | - | chr8_3:3042935-3042954 | Msa1269790:intron | 30.0% |
| ! | AAACTGATTCTGTGTGTTTA+TGG | - | chr8_3:3043015-3043034 | Msa1269790:intron | 30.0% |
| GTTGGAATATTCATTAGAAG+AGG | - | chr8_3:3043055-3043074 | Msa1269790:intron | 30.0% | |
| !!! | AGGTACGTGTATTTTAGTTT+TGG | - | chr8_3:3043075-3043094 | Msa1269790:intron | 30.0% |
| !!! | GGTACGTGTATTTTAGTTTT+GGG | - | chr8_3:3043076-3043095 | Msa1269790:intron | 30.0% |
| ! | ACAATATGATTTTCTGTTGC+AGG | - | chr8_3:3043144-3043163 | Msa1269790:intron | 30.0% |
| !!! | TTGCTGATCTACTGTTTTTA+AGG | - | chr8_3:3043224-3043243 | Msa1269790:intron | 30.0% |
| !!! | TGCTGATCTACTGTTTTTAA+GGG | - | chr8_3:3043225-3043244 | Msa1269790:intron | 30.0% |
| ATAAGAATGCAAAGGAATGA+AGG | + | chr8_3:3043412-3043431 | None:intergenic | 30.0% | |
| CATTCCTTTGCATTCTTATT+AGG | - | chr8_3:3043413-3043432 | Msa1269790:intron | 30.0% | |
| CAATTGCTCGTGTTTATAAT+TGG | - | chr8_3:3043625-3043644 | Msa1269790:intron | 30.0% | |
| TTTGTCTTGTATGATCATAC+GGG | - | chr8_3:3043960-3043979 | Msa1269790:five_prime_UTR | 30.0% | |
| CAAACCTATCTCACTCAATT+AGG | - | chr8_3:3038403-3038422 | Msa1269790:three_prime_UTR | 35.0% | |
| ! | GTGTGAAAGAGTATGTTTAG+CGG | - | chr8_3:3038697-3038716 | Msa1269790:intron | 35.0% |
| !!! | TTTTGGTTTGAATTTCGGAG+TGG | - | chr8_3:3038905-3038924 | Msa1269790:intron | 35.0% |
| ! | GCAAGGTGTTTCATTTCATA+TGG | + | chr8_3:3039205-3039224 | None:intergenic | 35.0% |
| ! | TTTTGTGTGAATGATGTCTG+AGG | - | chr8_3:3039345-3039364 | Msa1269790:intron | 35.0% |
| TCTGAGGATATATTTCTTGC+AGG | - | chr8_3:3039361-3039380 | Msa1269790:intron | 35.0% | |
| ! | CAGCAGTAAACTCTATGTTT+TGG | - | chr8_3:3039645-3039664 | Msa1269790:intron | 35.0% |
| TGCAGAAAATGCAACAACTT+TGG | + | chr8_3:3039797-3039816 | None:intergenic | 35.0% | |
| CTACCCCAAATCAATTAGAA+AGG | + | chr8_3:3039870-3039889 | None:intergenic | 35.0% | |
| AGATGTTAGAAAACAGGCTT+AGG | - | chr8_3:3039905-3039924 | Msa1269790:intron | 35.0% | |
| ! | AAAACAGGCTTAGGTTGTTT+GGG | - | chr8_3:3039914-3039933 | Msa1269790:intron | 35.0% |
| CGAAAGAGTAAATCATATGG+AGG | - | chr8_3:3039976-3039995 | Msa1269790:intron | 35.0% | |
| TAAATCATATGGAGGAGAGT+CGG | - | chr8_3:3039984-3040003 | Msa1269790:intron | 35.0% | |
| TACAGACACAGAATAGCATT+TGG | + | chr8_3:3040264-3040283 | None:intergenic | 35.0% | |
| CATAGTAGTGACACTATTTG+TGG | - | chr8_3:3040363-3040382 | Msa1269790:intron | 35.0% | |
| TGAGAAATCAGAACCTCTTA+AGG | + | chr8_3:3040676-3040695 | None:intergenic | 35.0% | |
| TATACCTCTAGACAAAAGCA+TGG | + | chr8_3:3040729-3040748 | None:intergenic | 35.0% | |
| ! | TTGTTCTTGTTGTCACATGA+TGG | - | chr8_3:3040754-3040773 | Msa1269790:intron | 35.0% |
| TCAAGCCATTAACTTCTTCA+TGG | + | chr8_3:3040817-3040836 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCCTGCTGGAATT+TGG | - | chr8_3:3040959-3040978 | Msa1269790:intron | 35.0% |
| ! | CTCTTCTAGTTAGAACTCTT+TGG | - | chr8_3:3041289-3041308 | Msa1269790:intron | 35.0% |
| AAGAACAGACCAATGATTCA+AGG | + | chr8_3:3041509-3041528 | None:intergenic | 35.0% | |
| !! | CGTAAAAGCATTAGTTAAGG+AGG | + | chr8_3:3041537-3041556 | None:intergenic | 35.0% |
| !! | GCTCGTAAAAGCATTAGTTA+AGG | + | chr8_3:3041540-3041559 | None:intergenic | 35.0% |
| ! | GTCATAAATGAGTTGGACAT+GGG | + | chr8_3:3041571-3041590 | None:intergenic | 35.0% |
| ! | TGTCATAAATGAGTTGGACA+TGG | + | chr8_3:3041572-3041591 | None:intergenic | 35.0% |
| ! | CAGTCTTGTCATAAATGAGT+TGG | + | chr8_3:3041578-3041597 | None:intergenic | 35.0% |
| TGACATCTACAGGAATGATA+TGG | + | chr8_3:3041601-3041620 | None:intergenic | 35.0% | |
| ATGATTAGAGTGACATCTAC+AGG | + | chr8_3:3041611-3041630 | None:intergenic | 35.0% | |
| ATCCTTCACAAAATTGGCTA+CGG | - | chr8_3:3041686-3041705 | Msa1269790:intron | 35.0% | |
| ! | AAATATCGGTGGTGAGTTTT+TGG | + | chr8_3:3041719-3041738 | None:intergenic | 35.0% |
| GGATAATACTCCACACTTAA+GGG | + | chr8_3:3041824-3041843 | None:intergenic | 35.0% | |
| TGGATAATACTCCACACTTA+AGG | + | chr8_3:3041825-3041844 | None:intergenic | 35.0% | |
| ! | AGGACGTTTTATCTTGGAAA+CGG | + | chr8_3:3042207-3042226 | None:intergenic | 35.0% |
| ATATTTAAACAAGCGCCCTT+AGG | - | chr8_3:3042233-3042252 | Msa1269790:intron | 35.0% | |
| AATGCTAACAAGTGACCTAA+GGG | + | chr8_3:3042251-3042270 | None:intergenic | 35.0% | |
| AAATGCTAACAAGTGACCTA+AGG | + | chr8_3:3042252-3042271 | None:intergenic | 35.0% | |
| TCCGTAATGTAGAATGTGAA+TGG | - | chr8_3:3042507-3042526 | Msa1269790:intron | 35.0% | |
| CCCATTCACATTCTACATTA+CGG | + | chr8_3:3042511-3042530 | None:intergenic | 35.0% | |
| CCGTAATGTAGAATGTGAAT+GGG | - | chr8_3:3042508-3042527 | Msa1269790:intron | 35.0% | |
| TTGTATGTTAGTCCTGGAAA+GGG | + | chr8_3:3042563-3042582 | None:intergenic | 35.0% | |
| ! | ATAATTTTCTTGCAGGGTAG+GGG | + | chr8_3:3042586-3042605 | None:intergenic | 35.0% |
| ! | GATAATTTTCTTGCAGGGTA+GGG | + | chr8_3:3042587-3042606 | None:intergenic | 35.0% |
| ! | TGATAATTTTCTTGCAGGGT+AGG | + | chr8_3:3042588-3042607 | None:intergenic | 35.0% |
| TGAAAACTAAGGTTTGTGAG+TGG | - | chr8_3:3042708-3042727 | Msa1269790:intron | 35.0% | |
| TAGTTACTGCTAGTATGCTA+TGG | - | chr8_3:3042751-3042770 | Msa1269790:intron | 35.0% | |
| TGCATCATAAGGCTTCAAAA+TGG | + | chr8_3:3042846-3042865 | None:intergenic | 35.0% | |
| CTTGCCTAATAAGAATGCAA+AGG | + | chr8_3:3043420-3043439 | None:intergenic | 35.0% | |
| TATCCCAGATGCATCTATAA+GGG | + | chr8_3:3043521-3043540 | None:intergenic | 35.0% | |
| ATATCCCAGATGCATCTATA+AGG | + | chr8_3:3043522-3043541 | None:intergenic | 35.0% | |
| ATAATTGGGATGTCCATCAA+CGG | - | chr8_3:3043640-3043659 | Msa1269790:intron | 35.0% | |
| CCTATCCTAGAAACTACTTT+GGG | + | chr8_3:3043846-3043865 | None:intergenic | 35.0% | |
| TCCTATCCTAGAAACTACTT+TGG | + | chr8_3:3043847-3043866 | None:intergenic | 35.0% | |
| GTGTATTCTACTCTGCAATT+TGG | - | chr8_3:3043982-3044001 | Msa1269790:five_prime_UTR | 35.0% | |
| TTCTTCGTCTTCATCATCAG+CGG | - | chr8_3:3038333-3038352 | Msa1269790:three_prime_UTR | 40.0% | |
| GAGACCTAATTGAGTGAGAT+AGG | + | chr8_3:3038410-3038429 | None:intergenic | 40.0% | |
| !! | CTCTCGCTTTTCTTCAAGAA+AGG | - | chr8_3:3038443-3038462 | Msa1269790:three_prime_UTR | 40.0% |
| TTATGAAGTGTATGGGGAGT+TGG | - | chr8_3:3038647-3038666 | Msa1269790:intron | 40.0% | |
| TATGGGGAGTTGGATTTGTA+TGG | - | chr8_3:3038657-3038676 | Msa1269790:intron | 40.0% | |
| GTTAACTGCTTCTGTATCAC+TGG | - | chr8_3:3039020-3039039 | Msa1269790:CDS | 40.0% | |
| !! | TTGCATTGGCTTAACACTTG+AGG | - | chr8_3:3039276-3039295 | Msa1269790:intron | 40.0% |
| !! | TGCATTGGCTTAACACTTGA+GGG | - | chr8_3:3039277-3039296 | Msa1269790:intron | 40.0% |
| ! | TCGCATTTTTATGCCAGCAT+AGG | - | chr8_3:3039609-3039628 | Msa1269790:intron | 40.0% |
| !! | TATGTTTTGGGCTCGTGTTA+CGG | - | chr8_3:3039658-3039677 | Msa1269790:intron | 40.0% |
| ! | GAAAACAGGCTTAGGTTGTT+TGG | - | chr8_3:3039913-3039932 | Msa1269790:intron | 40.0% |
| GCGCGAAAGAGTAAATCATA+TGG | - | chr8_3:3039973-3039992 | Msa1269790:intron | 40.0% | |
| AGTCGGATCAAAAAAGGTAG+AGG | - | chr8_3:3040001-3040020 | Msa1269790:intron | 40.0% | |
| AGTAGTGACACTATTTGTGG+TGG | - | chr8_3:3040366-3040385 | Msa1269790:intron | 40.0% | |
| GTCGTCCATGAAGAAGTTAA+TGG | - | chr8_3:3040809-3040828 | Msa1269790:intron | 40.0% | |
| !!! | GAAAACGTTTTTTTGCCTGC+TGG | - | chr8_3:3040952-3040971 | Msa1269790:intron | 40.0% |
| ATCAATAGCCAAATTCCAGC+AGG | + | chr8_3:3040970-3040989 | None:intergenic | 40.0% | |
| GTACTCATGAACAGAACAAC+AGG | - | chr8_3:3041207-3041226 | Msa1269790:intron | 40.0% | |
| CAACTAGTGACAAAAGGCTT+TGG | + | chr8_3:3041385-3041404 | None:intergenic | 40.0% | |
| ! | CAAAGCCTTTTGTCACTAGT+TGG | - | chr8_3:3041383-3041402 | Msa1269790:intron | 40.0% |
| CAACACCAACTAGTGACAAA+AGG | + | chr8_3:3041391-3041410 | None:intergenic | 40.0% | |
| !! | CTTTTGTCACTAGTTGGTGT+TGG | - | chr8_3:3041389-3041408 | Msa1269790:intron | 40.0% |
| ACGATACATGATAGGACATC+GGG | + | chr8_3:3041435-3041454 | None:intergenic | 40.0% | |
| CACGATACATGATAGGACAT+CGG | + | chr8_3:3041436-3041455 | None:intergenic | 40.0% | |
| TGTCCTATCATGTATCGTGT+CGG | - | chr8_3:3041437-3041456 | Msa1269790:intron | 40.0% | |
| ! | GAATCATTGGTCTGTTCTTC+CGG | - | chr8_3:3041510-3041529 | Msa1269790:intron | 40.0% |
| AAGCATTAGTTAAGGAGGAC+CGG | + | chr8_3:3041532-3041551 | None:intergenic | 40.0% | |
| ! | AATTTTGTGAAGGATGGAGG+CGG | + | chr8_3:3041681-3041700 | None:intergenic | 40.0% |
| ! | GTAGCCAATTTTGTGAAGGA+TGG | + | chr8_3:3041687-3041706 | None:intergenic | 40.0% |
| ACAGTGTTGTCAAATATCGG+TGG | + | chr8_3:3041730-3041749 | None:intergenic | 40.0% | |
| !! | CACACTTAAGGGAGTATTTC+GGG | + | chr8_3:3041813-3041832 | None:intergenic | 40.0% |
| !! | CCACACTTAAGGGAGTATTT+CGG | + | chr8_3:3041814-3041833 | None:intergenic | 40.0% |
| ! | TAACAAGTGCACGCTTGTTA+AGG | - | chr8_3:3042108-3042127 | Msa1269790:intron | 40.0% |
| GTTGTATGTTAGTCCTGGAA+AGG | + | chr8_3:3042564-3042583 | None:intergenic | 40.0% | |
| !!! | GGAACTTATTGCCGATTTTG+AGG | - | chr8_3:3042956-3042975 | Msa1269790:intron | 40.0% |
| CACAGAATCAGTTTCTTCGA+TGG | + | chr8_3:3043009-3043028 | None:intergenic | 40.0% | |
| TGATTCTGTGTGTTTATGGC+TGG | - | chr8_3:3043019-3043038 | Msa1269790:intron | 40.0% | |
| GATTCTGTGTGTTTATGGCT+GGG | - | chr8_3:3043020-3043039 | Msa1269790:intron | 40.0% | |
| TGCTCTTCTACAGAAAAACC+TGG | - | chr8_3:3043171-3043190 | Msa1269790:intron | 40.0% | |
| AGACCTGAGTAATTGTCGTT+TGG | + | chr8_3:3043252-3043271 | None:intergenic | 40.0% | |
| TATGTTAACATCAGAGGGAG+AGG | - | chr8_3:3043335-3043354 | Msa1269790:intron | 40.0% | |
| ATGTTAACATCAGAGGGAGA+GGG | - | chr8_3:3043336-3043355 | Msa1269790:intron | 40.0% | |
| ! | AAATGTGCTGCTGCAGTTTA+TGG | + | chr8_3:3043388-3043407 | None:intergenic | 40.0% |
| ACACCCTTATAGATGCATCT+GGG | - | chr8_3:3043515-3043534 | Msa1269790:intron | 40.0% | |
| GACGCATAATCTAAGCTGAA+CGG | + | chr8_3:3043759-3043778 | None:intergenic | 40.0% | |
| GTTTGCCCAAAGTAGTTTCT+AGG | - | chr8_3:3043838-3043857 | Msa1269790:CDS | 40.0% | |
| !! | CCCAAAGTAGTTTCTAGGAT+AGG | - | chr8_3:3043843-3043862 | Msa1269790:CDS | 40.0% |
| CGATTGCAGTGCTTCAACAA+TGG | - | chr8_3:3038306-3038325 | Msa1269790:three_prime_UTR | 45.0% | |
| ACAGAACGAAGAGGAATACC+AGG | - | chr8_3:3038358-3038377 | Msa1269790:three_prime_UTR | 45.0% | |
| CGACAAGTTAGTATCGTGTC+CGG | - | chr8_3:3038723-3038742 | Msa1269790:intron | 45.0% | |
| !! | CGAAGTACTGACATAGACAC+CGG | + | chr8_3:3038745-3038764 | None:intergenic | 45.0% |
| ! | GGTAGCTTGCAATGTGAATG+AGG | - | chr8_3:3039073-3039092 | Msa1269790:intron | 45.0% |
| TTGCAGGCTTCAGCAATACA+AGG | - | chr8_3:3039377-3039396 | Msa1269790:intron | 45.0% | |
| !! | ATGTTTTGGGCTCGTGTTAC+GGG | - | chr8_3:3039659-3039678 | Msa1269790:intron | 45.0% |
| GAGGAGAGTCGGATCAAAAA+AGG | - | chr8_3:3039995-3040014 | Msa1269790:intron | 45.0% | |
| CAAACCTATCCCACTAAGTG+GGG | + | chr8_3:3040144-3040163 | None:intergenic | 45.0% | |
| CCAAACCTATCCCACTAAGT+GGG | + | chr8_3:3040145-3040164 | None:intergenic | 45.0% | |
| ACCAAACCTATCCCACTAAG+TGG | + | chr8_3:3040146-3040165 | None:intergenic | 45.0% | |
| ! | CACTATTTGTGGTGGTTTGC+AGG | - | chr8_3:3040374-3040393 | Msa1269790:intron | 45.0% |
| TGCGACTTTGCAAGCAAAGA+AGG | - | chr8_3:3040433-3040452 | Msa1269790:intron | 45.0% | |
| GCGACTTTGCAAGCAAAGAA+GGG | - | chr8_3:3040434-3040453 | Msa1269790:intron | 45.0% | |
| ! | CTGACCATGCTTTTGTCTAG+AGG | - | chr8_3:3040722-3040741 | Msa1269790:intron | 45.0% |
| TCTTCATGGACGACACAAAC+AGG | + | chr8_3:3040803-3040822 | None:intergenic | 45.0% | |
| GCATCGTGAAGTCCTAGAAA+AGG | - | chr8_3:3041136-3041155 | Msa1269790:intron | 45.0% | |
| CTTGTGCACTAATGTGCAGA+TGG | + | chr8_3:3041315-3041334 | None:intergenic | 45.0% | |
| CATCCGACACGATACATGAT+AGG | + | chr8_3:3041443-3041462 | None:intergenic | 45.0% | |
| !!! | ACAGTTTTGGCTCTCTGTCA+TGG | + | chr8_3:3041650-3041669 | None:intergenic | 45.0% |
| GCCTCCATCCTTCACAAAAT+TGG | - | chr8_3:3041680-3041699 | Msa1269790:intron | 45.0% | |
| ! | GCCAATTTTGTGAAGGATGG+AGG | + | chr8_3:3041684-3041703 | None:intergenic | 45.0% |
| CTTCACAAAATTGGCTACGG+CGG | - | chr8_3:3041689-3041708 | Msa1269790:intron | 45.0% | |
| CCGAAATACTCCCTTAAGTG+TGG | - | chr8_3:3041811-3041830 | Msa1269790:intron | 45.0% | |
| AGAATGTGAATGGGTGTGCT+TGG | - | chr8_3:3042517-3042536 | Msa1269790:intron | 45.0% | |
| TAGGGGTTGTATGTTAGTCC+TGG | + | chr8_3:3042569-3042588 | None:intergenic | 45.0% | |
| TGCTAGTATGCTATGGACTC+TGG | - | chr8_3:3042758-3042777 | Msa1269790:intron | 45.0% | |
| GCCTTCTGACACCTCAAAAT+CGG | + | chr8_3:3042970-3042989 | None:intergenic | 45.0% | |
| GCTGGGAGCAAATGTTATGT+TGG | - | chr8_3:3043037-3043056 | Msa1269790:intron | 45.0% | |
| !! | AACTGGCTCTAGCATTATCC+AGG | + | chr8_3:3043192-3043211 | None:intergenic | 45.0% |
| GGACCAAACGACAATTACTC+AGG | - | chr8_3:3043246-3043265 | Msa1269790:intron | 45.0% | |
| TGTTAACATCAGAGGGAGAG+GGG | - | chr8_3:3043337-3043356 | Msa1269790:intron | 45.0% | |
| !! | TCTATAAGGGTGTCCATGGT+AGG | + | chr8_3:3043508-3043527 | None:intergenic | 45.0% |
| !! | TGCATCTATAAGGGTGTCCA+TGG | + | chr8_3:3043512-3043531 | None:intergenic | 45.0% |
| GACACCCTTATAGATGCATC+TGG | - | chr8_3:3043514-3043533 | Msa1269790:intron | 45.0% | |
| CTTGTTGAGTTCTCCGTTGA+TGG | + | chr8_3:3043656-3043675 | None:intergenic | 45.0% | |
| TTCCTTCCTGTCTGTAGTTC+TGG | - | chr8_3:3043816-3043835 | Msa1269790:CDS | 45.0% | |
| AACCAGAACTACAGACAGGA+AGG | + | chr8_3:3043821-3043840 | None:intergenic | 45.0% | |
| TCTTCAACGAACTGAGCACC+TGG | + | chr8_3:3038379-3038398 | None:intergenic | 50.0% | |
| TTTATGCCAGCATAGGCTGC+TGG | - | chr8_3:3039616-3039635 | Msa1269790:intron | 50.0% | |
| GGTTGTTTGGGCATGTAGAG+AGG | - | chr8_3:3039926-3039945 | Msa1269790:intron | 50.0% | |
| CCCACTTAGTGGGATAGGTT+TGG | - | chr8_3:3040142-3040161 | Msa1269790:intron | 50.0% | |
| ! | TTGCAAGCAAAGAAGGGCAC+CGG | - | chr8_3:3040440-3040459 | Msa1269790:intron | 50.0% |
| AGTCCTCAAACGAACCTCAC+CGG | + | chr8_3:3040462-3040481 | None:intergenic | 50.0% | |
| ! | GAGTTGGACATGGGTTGAGA+CGG | + | chr8_3:3041562-3041581 | None:intergenic | 50.0% |
| CTCTCTGTCATGGACAACAC+TGG | + | chr8_3:3041640-3041659 | None:intergenic | 50.0% | |
| ! | CGCCGTAGCCAATTTTGTGA+AGG | + | chr8_3:3041691-3041710 | None:intergenic | 50.0% |
| TGTTAGTCCTGGAAAGGGTG+CGG | + | chr8_3:3042558-3042577 | None:intergenic | 50.0% | |
| !!! | GCCGATTTTGAGGTGTCAGA+AGG | - | chr8_3:3042966-3042985 | Msa1269790:intron | 50.0% |
| GGCAAACCAGAACTACAGAC+AGG | + | chr8_3:3043825-3043844 | None:intergenic | 50.0% | |
| TCAGCGGTGACAGAACGAAG+AGG | - | chr8_3:3038349-3038368 | Msa1269790:three_prime_UTR | 55.0% | |
| TTTCAGCCAGCAGCCTATGC+TGG | + | chr8_3:3039625-3039644 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr8_3:3040132-3040151 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr8_3:3040131-3040150 | Msa1269790:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr8_3:3040132-3040151 | Msa1269790:intron | 55.0% | |
| CCTATCCCACTAAGTGGGGT+CGG | + | chr8_3:3040140-3040159 | None:intergenic | 55.0% | |
| ! | GGCGGCTGGTATGACAGTTT+TGG | + | chr8_3:3041663-3041682 | None:intergenic | 55.0% |
| CATGGTAGGCATGAAGCTGG+AGG | + | chr8_3:3043494-3043513 | None:intergenic | 55.0% | |
| CTCCAGCTTCATGCCTACCA+TGG | - | chr8_3:3043492-3043511 | Msa1269790:intron | 55.0% | |
| GTCCATGGTAGGCATGAAGC+TGG | + | chr8_3:3043497-3043516 | None:intergenic | 55.0% | |
| TGAAGCTCCTCGCGCAGCAA+AGG | - | chr8_3:3039409-3039428 | Msa1269790:intron | 60.0% | |
| GAAGCTCCTCGCGCAGCAAA+GGG | - | chr8_3:3039410-3039429 | Msa1269790:intron | 60.0% | |
| GAAGTTCCCTTTGCTGCGCG+AGG | + | chr8_3:3039419-3039438 | None:intergenic | 60.0% | |
| CGCGCAGCAAAGGGAACTTC+AGG | - | chr8_3:3039419-3039438 | Msa1269790:intron | 60.0% | |
| CCGACCCCACTTAGTGGGAT+AGG | - | chr8_3:3040137-3040156 | Msa1269790:intron | 60.0% | |
| !! | AGCAAAGAAGGGCACCGGTG+AGG | - | chr8_3:3040445-3040464 | Msa1269790:intron | 60.0% |
| ! | GCACCGGTGAGGTTCGTTTG+AGG | - | chr8_3:3040456-3040475 | Msa1269790:intron | 60.0% |
| TTGTGAAGGATGGAGGCGGC+TGG | + | chr8_3:3041677-3041696 | None:intergenic | 60.0% | |
| GTTCAAGCCGCACCCTTTCC+AGG | - | chr8_3:3042548-3042567 | Msa1269790:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 3038217 | 3044032 | 3038217 | ID=Msa1269790;Name=Msa1269790 |
| chr8_3 | mRNA | 3038217 | 3044032 | 3038217 | ID=Msa1269790-mRNA-1;Parent=Msa1269790;Name=Msa1269790-mRNA-1;_AED=0.11;_eAED=0.11;_QI=108|0.75|1|1|1|1|5|325|168 |
| chr8_3 | exon | 3038217 | 3038628 | 3038217 | ID=Msa1269790-mRNA-1:exon:996;Parent=Msa1269790-mRNA-1 |
| chr8_3 | exon | 3038982 | 3039083 | 3038982 | ID=Msa1269790-mRNA-1:exon:995;Parent=Msa1269790-mRNA-1 |
| chr8_3 | exon | 3039173 | 3039292 | 3039173 | ID=Msa1269790-mRNA-1:exon:994;Parent=Msa1269790-mRNA-1 |
| chr8_3 | exon | 3042809 | 3042866 | 3042809 | ID=Msa1269790-mRNA-1:exon:993;Parent=Msa1269790-mRNA-1 |
| chr8_3 | exon | 3043785 | 3044032 | 3043785 | ID=Msa1269790-mRNA-1:exon:992;Parent=Msa1269790-mRNA-1 |
| chr8_3 | five_prime_UTR | 3043925 | 3044032 | 3043925 | ID=Msa1269790-mRNA-1:five_prime_utr;Parent=Msa1269790-mRNA-1 |
| chr8_3 | CDS | 3043785 | 3043924 | 3043785 | ID=Msa1269790-mRNA-1:cds;Parent=Msa1269790-mRNA-1 |
| chr8_3 | CDS | 3042809 | 3042866 | 3042809 | ID=Msa1269790-mRNA-1:cds;Parent=Msa1269790-mRNA-1 |
| chr8_3 | CDS | 3039173 | 3039292 | 3039173 | ID=Msa1269790-mRNA-1:cds;Parent=Msa1269790-mRNA-1 |
| chr8_3 | CDS | 3038982 | 3039083 | 3038982 | ID=Msa1269790-mRNA-1:cds;Parent=Msa1269790-mRNA-1 |
| chr8_3 | CDS | 3038542 | 3038628 | 3038542 | ID=Msa1269790-mRNA-1:cds;Parent=Msa1269790-mRNA-1 |
| chr8_3 | three_prime_UTR | 3038217 | 3038541 | 3038217 | ID=Msa1269790-mRNA-1:three_prime_utr;Parent=Msa1269790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
