Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199620 | XP_003594716.1 | 100.000 | 192 | 0 | 0 | 1 | 192 | 1 | 192 | 1.89e-135 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199620 | sp|P57741|PFD3_ARATH | 83.721 | 172 | 28 | 0 | 11 | 182 | 13 | 184 | 6.37e-106 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199620 | G7IMS6 | 100.000 | 192 | 0 | 0 | 1 | 192 | 1 | 192 | 9.03e-136 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044990 | Msa0199620 | 0.837592 | 4.746866e-57 | -8.615850e-47 |
| Msa0115870 | Msa0199620 | 0.841858 | 3.683071e-58 | -8.615850e-47 |
| Msa0199340 | Msa0199620 | 0.837118 | 6.275778e-57 | -8.615850e-47 |
| Msa0199620 | Msa0229150 | 0.813982 | 1.942667e-51 | -8.615850e-47 |
| Msa0199620 | Msa0280370 | 0.807619 | 4.626255e-50 | -8.615850e-47 |
| Msa0199620 | Msa0307380 | 0.809512 | 1.824637e-50 | -8.615850e-47 |
| Msa0199620 | Msa0319640 | 0.880069 | 7.431641e-70 | -8.615850e-47 |
| Msa0199620 | Msa0376830 | 0.840389 | 8.955432e-58 | -8.615850e-47 |
| Msa0199620 | Msa0577690 | 0.821433 | 4.048431e-53 | -8.615850e-47 |
| Msa0199620 | Msa0651870 | 0.809809 | 1.574558e-50 | -8.615850e-47 |
| Msa0199620 | Msa0651890 | 0.811518 | 6.724644e-51 | -8.615850e-47 |
| Msa0199620 | Msa0700410 | 0.824347 | 8.477831e-54 | -8.615850e-47 |
| Msa0199620 | Msa1085420 | 0.800102 | 1.687358e-48 | -8.615850e-47 |
| Msa0199620 | Msa1269790 | 0.859470 | 4.046097e-63 | -8.615850e-47 |
| Msa0199620 | Msa1363280 | -0.822866 | 1.883293e-53 | -8.615850e-47 |
| Msa0199620 | Msa1420430 | 0.845659 | 3.538822e-59 | -8.615850e-47 |
| Msa0199620 | Msa1445370 | 0.846404 | 2.218576e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199620 | MtrunA17_Chr2g0294251 | 100.000 | 192 | 0 | 0 | 1 | 192 | 1 | 192 | 1.74e-139 | 387 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199620 | AT5G49510.2 | 83.721 | 172 | 28 | 0 | 11 | 182 | 13 | 184 | 6.48e-107 | 305 |
| Msa0199620 | AT5G49510.1 | 83.721 | 172 | 28 | 0 | 11 | 182 | 13 | 184 | 6.48e-107 | 305 |
Find 46 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTGATTCTGTGTGTTTA+TGG | 0.168432 | 2_1:-18839611 | Msa0199620:CDS |
| CAATTGCTCGTGTTTATAAT+TGG | 0.169849 | 2_1:-18839001 | Msa0199620:CDS |
| TGATTATGATTATGATTTCT+TGG | 0.235794 | 2_1:-18838724 | Msa0199620:three_prime_UTR |
| TTCCTTCCTGTCTGTAGTTC+TGG | 0.239248 | 2_1:-18838810 | Msa0199620:three_prime_UTR |
| GTTTGCCCAAAGTAGTTTCT+AGG | 0.258157 | 2_1:-18838788 | Msa0199620:three_prime_UTR |
| CTTGTTGAGTTCTCCGTTGA+TGG | 0.269073 | 2_1:+18838973 | None:intergenic |
| CAAACCTATCTCACTCAATT+AGG | 0.296890 | 2_1:-18844257 | Msa0199620:CDS |
| GTGTATTCTACTCTGCAATT+TGG | 0.355142 | 2_1:-18838644 | Msa0199620:three_prime_UTR |
| AATTGCTCGTGTTTATAATT+GGG | 0.358053 | 2_1:-18839000 | Msa0199620:CDS |
| TTTCTAATGTAAGTCAAAGT+TGG | 0.363552 | 2_1:-18844438 | Msa0199620:five_prime_UTR |
| TTCTAATGTAAGTCAAAGTT+GGG | 0.391809 | 2_1:-18844437 | Msa0199620:five_prime_UTR |
| AGCAACAAGAACTTCTAAAC+TGG | 0.406664 | 2_1:+18839420 | None:intergenic |
| GAGACCTAATTGAGTGAGAT+AGG | 0.406753 | 2_1:+18844253 | None:intergenic |
| CGCGCAGCAAAGGGAACTTC+AGG | 0.407214 | 2_1:-18843238 | Msa0199620:intron |
| TGATTCTGTGTGTTTATGGC+TGG | 0.425847 | 2_1:-18839607 | Msa0199620:CDS |
| GCCTTCTGACACCTCAAAAT+CGG | 0.428491 | 2_1:+18839659 | None:intergenic |
| CCTATCCTAGAAACTACTTT+GGG | 0.439541 | 2_1:+18838783 | None:intergenic |
| TGCGACTTTGCAAGCAAAGA+AGG | 0.447827 | 2_1:-18842219 | Msa0199620:CDS |
| TCCTATCCTAGAAACTACTT+TGG | 0.458624 | 2_1:+18838782 | None:intergenic |
| AGACCTGAGTAATTGTCGTT+TGG | 0.476174 | 2_1:+18839377 | None:intergenic |
| AACTGGCTCTAGCATTATCC+AGG | 0.479058 | 2_1:+18839437 | None:intergenic |
| CCCAAAGTAGTTTCTAGGAT+AGG | 0.497185 | 2_1:-18838783 | Msa0199620:three_prime_UTR |
| TGAAGCTCCTCGCGCAGCAA+AGG | 0.498907 | 2_1:-18843248 | Msa0199620:CDS |
| TTGCAGGCTTCAGCAATACA+AGG | 0.499475 | 2_1:-18843280 | Msa0199620:intron |
| GATTCTGTGTGTTTATGGCT+GGG | 0.504747 | 2_1:-18839606 | Msa0199620:CDS |
| GAAGCTCCTCGCGCAGCAAA+GGG | 0.509666 | 2_1:-18843247 | Msa0199620:CDS |
| CGATTGCAGTGCTTCAACAA+TGG | 0.524135 | 2_1:-18844354 | Msa0199620:exon |
| TTTGTCTTGTATGATCATAC+GGG | 0.549051 | 2_1:-18838666 | Msa0199620:three_prime_UTR |
| GAAGTTCCCTTTGCTGCGCG+AGG | 0.553650 | 2_1:+18843241 | None:intergenic |
| CACAGAATCAGTTTCTTCGA+TGG | 0.555916 | 2_1:+18839620 | None:intergenic |
| GTTGGAATATTCATTAGAAG+AGG | 0.558241 | 2_1:-18839571 | Msa0199620:intron |
| GCGACTTTGCAAGCAAAGAA+GGG | 0.569412 | 2_1:-18842218 | Msa0199620:CDS |
| TGGTTTGCAGGCTAAGATAC+CGG | 0.570733 | 2_1:-18842267 | Msa0199620:intron |
| GCTGGGAGCAAATGTTATGT+TGG | 0.581899 | 2_1:-18839589 | Msa0199620:CDS |
| TTGCAAGCAAAGAAGGGCAC+CGG | 0.592987 | 2_1:-18842212 | Msa0199620:CDS |
| TCTTCAACGAACTGAGCACC+TGG | 0.598579 | 2_1:+18844284 | None:intergenic |
| AACCAGAACTACAGACAGGA+AGG | 0.605903 | 2_1:+18838808 | None:intergenic |
| AGTCCTCAAACGAACCTCAC+CGG | 0.608080 | 2_1:+18842193 | None:intergenic |
| GGCAAACCAGAACTACAGAC+AGG | 0.611996 | 2_1:+18838804 | None:intergenic |
| TTCTTCGTCTTCATCATCAG+CGG | 0.634937 | 2_1:-18844327 | Msa0199620:CDS |
| ATAATTGGGATGTCCATCAA+CGG | 0.640983 | 2_1:-18838986 | Msa0199620:CDS |
| ACAGAACGAAGAGGAATACC+AGG | 0.644106 | 2_1:-18844302 | Msa0199620:CDS |
| AGCAAAGAAGGGCACCGGTG+AGG | 0.645137 | 2_1:-18842207 | Msa0199620:intron |
| GGACCAAACGACAATTACTC+AGG | 0.647185 | 2_1:-18839380 | Msa0199620:intron |
| GACGCATAATCTAAGCTGAA+CGG | 0.653616 | 2_1:+18838870 | None:intergenic |
| TCAGCGGTGACAGAACGAAG+AGG | 0.716817 | 2_1:-18844311 | Msa0199620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCTATATTTTTTATGAA+TGG | - | chr2_1:18839572-18839591 | Msa0199620:CDS | 10.0% |
| !!! | AATTTATTTTATGCTTTAAA+GGG | - | chr2_1:18839702-18839721 | Msa0199620:intron | 10.0% |
| !! | TGTAGTAAATAAATTTAAAA+TGG | + | chr2_1:18843313-18843332 | None:intergenic | 10.0% |
| !! | AATGCAAAAAATAAAATAAA+AGG | + | chr2_1:18843986-18844005 | None:intergenic | 10.0% |
| !! | ACATATATATAAAAAAGAAA+TGG | + | chr2_1:18844304-18844323 | None:intergenic | 10.0% |
| !!! | ATTTCATAATGAAGTAATTT+TGG | - | chr2_1:18839382-18839401 | Msa0199620:CDS | 15.0% |
| !!! | GAATTTATTTTATGCTTTAA+AGG | - | chr2_1:18839701-18839720 | Msa0199620:intron | 15.0% |
| !!! | ATTTATTTTATGCTTTAAAG+GGG | - | chr2_1:18839703-18839722 | Msa0199620:intron | 15.0% |
| !!! | TCTCTTAATAGTTTTTTTAT+AGG | + | chr2_1:18840434-18840453 | None:intergenic | 15.0% |
| !!! | AATTTTAGATAAAACGTTTT+TGG | - | chr2_1:18840920-18840939 | Msa0199620:intron | 15.0% |
| !!! | TTTAGGATTTTATTATCTTA+AGG | + | chr2_1:18842346-18842365 | None:intergenic | 15.0% |
| !!! | TCTATTACTTTAATTTGTTT+AGG | + | chr2_1:18842363-18842382 | None:intergenic | 15.0% |
| !! | AAGATTATACTGTTTAATTA+GGG | + | chr2_1:18842395-18842414 | None:intergenic | 15.0% |
| !! | TAAGATTATACTGTTTAATT+AGG | + | chr2_1:18842396-18842415 | None:intergenic | 15.0% |
| !!! | AAGATAAATCTCTAAAATTA+AGG | - | chr2_1:18842453-18842472 | Msa0199620:intron | 15.0% |
| !! | ATCAATATCCTATTAATATA+AGG | - | chr2_1:18842485-18842504 | Msa0199620:intron | 15.0% |
| !! | TCAATATCCTATTAATATAA+GGG | - | chr2_1:18842486-18842505 | Msa0199620:intron | 15.0% |
| !! | ATAAATTTCAAGATAATCAA+GGG | + | chr2_1:18842683-18842702 | None:intergenic | 15.0% |
| !! | TATAAATTTCAAGATAATCA+AGG | + | chr2_1:18842684-18842703 | None:intergenic | 15.0% |
| !!! | GTATATAAAGGTATAATTTA+GGG | + | chr2_1:18842819-18842838 | None:intergenic | 15.0% |
| !!! | AGTATATAAAGGTATAATTT+AGG | + | chr2_1:18842820-18842839 | None:intergenic | 15.0% |
| !!! | TGAAAAAAAGAAGTATATAA+AGG | + | chr2_1:18842831-18842850 | None:intergenic | 15.0% |
| !!! | ATATACTTCTTTTTTTCAAA+TGG | - | chr2_1:18842833-18842852 | Msa0199620:intron | 15.0% |
| !!! | TATACTTCTTTTTTTCAAAT+GGG | - | chr2_1:18842834-18842853 | Msa0199620:intron | 15.0% |
| !!! | ATAACATTATATTTTGTCAA+TGG | - | chr2_1:18843053-18843072 | Msa0199620:intron | 15.0% |
| !! | AATTCATCAAAATTAAAAAC+TGG | + | chr2_1:18844225-18844244 | None:intergenic | 15.0% |
| !!! | TTTTTAATTTTGATGAATTG+TGG | - | chr2_1:18844226-18844245 | Msa0199620:CDS | 15.0% |
| !!! | AAACATTTTTGTATAATTGA+TGG | - | chr2_1:18844364-18844383 | Msa0199620:five_prime_UTR | 15.0% |
| !!! | AACATTTTTGTATAATTGAT+GGG | - | chr2_1:18844365-18844384 | Msa0199620:five_prime_UTR | 15.0% |
| !!! | TCTCAAAATCTCATTTTTTA+TGG | - | chr2_1:18838894-18838913 | Msa0199620:three_prime_UTR | 20.0% |
| !! | TTCATTTCTATAGTTTAGTT+TGG | - | chr2_1:18838965-18838984 | Msa0199620:CDS | 20.0% |
| !!! | AAGTTTTTTATGAAGTGTAT+GGG | - | chr2_1:18839040-18839059 | Msa0199620:intron | 20.0% |
| !!! | GTAAAGTATTAAGATGAAAA+GGG | - | chr2_1:18839192-18839211 | Msa0199620:intron | 20.0% |
| !!! | GAAAATTTTGGTTTGAATTT+CGG | - | chr2_1:18839300-18839319 | Msa0199620:intron | 20.0% |
| !! | GCATATTATACTTTATCTTT+AGG | - | chr2_1:18839859-18839878 | Msa0199620:intron | 20.0% |
| !! | TAGTTTGATTGAAGATAAAA+AGG | - | chr2_1:18839906-18839925 | Msa0199620:intron | 20.0% |
| !! | AATTACCTTTCTAATTGATT+TGG | - | chr2_1:18840265-18840284 | Msa0199620:intron | 20.0% |
| !!! | ATTACCTTTCTAATTGATTT+GGG | - | chr2_1:18840266-18840285 | Msa0199620:intron | 20.0% |
| !! | AACTATTAAGAGAAACTATT+AGG | - | chr2_1:18840441-18840460 | Msa0199620:intron | 20.0% |
| !!! | GAAATTTTGTGCATTTTATT+TGG | - | chr2_1:18840997-18841016 | Msa0199620:intron | 20.0% |
| !! | AAATTCAACAATTAAACATG+GGG | + | chr2_1:18841250-18841269 | None:intergenic | 20.0% |
| !! | GAAATTCAACAATTAAACAT+GGG | + | chr2_1:18841251-18841270 | None:intergenic | 20.0% |
| !! | TGAAATTCAACAATTAAACA+TGG | + | chr2_1:18841252-18841271 | None:intergenic | 20.0% |
| !!! | TAAACAAAAAATCCTTTTCT+AGG | + | chr2_1:18841559-18841578 | None:intergenic | 20.0% |
| !! | TTGTTCATTATTTATTAGCT+AGG | - | chr2_1:18841641-18841660 | Msa0199620:intron | 20.0% |
| !! | TAAATTCAAATGCTTCTTAA+TGG | - | chr2_1:18841881-18841900 | Msa0199620:intron | 20.0% |
| !!! | ATACTTCTTTTTTTCAAATG+GGG | - | chr2_1:18842835-18842854 | Msa0199620:intron | 20.0% |
| !! | TTTCAAATGTTTGAATGTTA+TGG | - | chr2_1:18842869-18842888 | Msa0199620:intron | 20.0% |
| !!! | ATATAAAAGTACTACATGTA+AGG | + | chr2_1:18843112-18843131 | None:intergenic | 20.0% |
| !!! | TTTTAAATAGTTGCATCATA+AGG | + | chr2_1:18843290-18843309 | None:intergenic | 20.0% |
| !! | TGTAAGTTAAAATTTAACAG+AGG | + | chr2_1:18843552-18843571 | None:intergenic | 20.0% |
| !! | TAAATTTATGTTAACATCAG+AGG | - | chr2_1:18843762-18843781 | Msa0199620:intron | 20.0% |
| !! | AAATTTATGTTAACATCAGA+GGG | - | chr2_1:18843763-18843782 | Msa0199620:intron | 20.0% |
| !!! | TATTGATTGTATATGTTATC+AGG | - | chr2_1:18844032-18844051 | Msa0199620:intron | 20.0% |
| !! | TGATTATGATTATGATTTCT+TGG | - | chr2_1:18844335-18844354 | Msa0199620:CDS | 20.0% |
| ! | TTTCTAATGTAAGTCAAAGT+TGG | - | chr2_1:18838621-18838640 | Msa0199620:three_prime_UTR | 25.0% |
| ! | TTCTAATGTAAGTCAAAGTT+GGG | - | chr2_1:18838622-18838641 | Msa0199620:three_prime_UTR | 25.0% |
| !!! | ATTTGTTGTCGTTTTGTTTT+GGG | + | chr2_1:18838659-18838678 | None:intergenic | 25.0% |
| !!! | TATTTGTTGTCGTTTTGTTT+TGG | + | chr2_1:18838660-18838679 | None:intergenic | 25.0% |
| !!! | CAAGTTTTTTATGAAGTGTA+TGG | - | chr2_1:18839039-18839058 | Msa0199620:intron | 25.0% |
| !!! | AGTTTTTTATGAAGTGTATG+GGG | - | chr2_1:18839041-18839060 | Msa0199620:intron | 25.0% |
| !!! | TATGGCATTTTAGTACTTTA+TGG | - | chr2_1:18839075-18839094 | Msa0199620:intron | 25.0% |
| !! | AATTACTAACAGTAGGTTTT+AGG | - | chr2_1:18839170-18839189 | Msa0199620:intron | 25.0% |
| !! | GGTAAAGTATTAAGATGAAA+AGG | - | chr2_1:18839191-18839210 | Msa0199620:intron | 25.0% |
| ! | AATGTGATTATGAGGTAAAT+TGG | - | chr2_1:18839235-18839254 | Msa0199620:intron | 25.0% |
| ! | GAGGTAAATTGGATTAATAT+AGG | - | chr2_1:18839246-18839265 | Msa0199620:intron | 25.0% |
| !! | ATTACAGTCTTCGAAAATTT+TGG | - | chr2_1:18839288-18839307 | Msa0199620:intron | 25.0% |
| !! | GAAAATTTGTGATTTTGGAT+TGG | - | chr2_1:18839331-18839350 | Msa0199620:intron | 25.0% |
| ! | TATAGTTAGATTAGTGAATG+AGG | - | chr2_1:18839452-18839471 | Msa0199620:CDS | 25.0% |
| ! | CAACTATTAATAACAAAGCA+AGG | + | chr2_1:18839622-18839641 | None:intergenic | 25.0% |
| ! | TTTGCAAGTTAATATTGCAT+TGG | - | chr2_1:18839662-18839681 | Msa0199620:CDS | 25.0% |
| ! | CAAACTATTAACAAACTACA+AGG | + | chr2_1:18839893-18839912 | None:intergenic | 25.0% |
| ! | TTGAAATCTTAAAATGCCAT+TGG | + | chr2_1:18839966-18839985 | None:intergenic | 25.0% |
| !!! | CATTTTAAGATTTCAACTTC+TGG | - | chr2_1:18839970-18839989 | Msa0199620:intron | 25.0% |
| !!! | TTACCTTTCTAATTGATTTG+GGG | - | chr2_1:18840267-18840286 | Msa0199620:intron | 25.0% |
| !! | TCTAACATCTTTTCTACTAT+AGG | + | chr2_1:18840298-18840317 | None:intergenic | 25.0% |
| ! | TAGAAAAGATGTTAGAAAAC+AGG | - | chr2_1:18840302-18840321 | Msa0199620:intron | 25.0% |
| !! | GTTGTTTGTTTGTTCTATTT+TGG | - | chr2_1:18840613-18840632 | Msa0199620:intron | 25.0% |
| ! | TATCTTTCAAATGTTCAGAT+TGG | - | chr2_1:18840948-18840967 | Msa0199620:intron | 25.0% |
| ! | ATATACAAGCACTAATTACA+TGG | - | chr2_1:18841106-18841125 | Msa0199620:intron | 25.0% |
| ! | TAAATATACCTCTAGACAAA+AGG | + | chr2_1:18841141-18841160 | None:intergenic | 25.0% |
| ! | AATTCAACAATTAAACATGG+GGG | + | chr2_1:18841249-18841268 | None:intergenic | 25.0% |
| ! | AGATGATGAATCAACTATTA+GGG | + | chr2_1:18841408-18841427 | None:intergenic | 25.0% |
| ! | TAGAACTACATCTTTATGTT+GGG | + | chr2_1:18841483-18841502 | None:intergenic | 25.0% |
| ! | TTAGAACTACATCTTTATGT+TGG | + | chr2_1:18841484-18841503 | None:intergenic | 25.0% |
| ! | AGTATTATCCAATTCTAACT+TGG | - | chr2_1:18842243-18842262 | Msa0199620:CDS | 25.0% |
| ! | TTATACTGTTTAATTAGGGT+AGG | + | chr2_1:18842391-18842410 | None:intergenic | 25.0% |
| ! | ATCAGTTACATTGAAAACTA+AGG | - | chr2_1:18843130-18843149 | Msa0199620:intron | 25.0% |
| ! | GCAGTAACTATTGTATAAAA+AGG | + | chr2_1:18843174-18843193 | None:intergenic | 25.0% |
| !! | GAATTGATAATCGTTACTTA+GGG | + | chr2_1:18843219-18843238 | None:intergenic | 25.0% |
| !! | AGAAGATTTATGTTTGACTT+TGG | - | chr2_1:18843361-18843380 | Msa0199620:intron | 25.0% |
| ! | TGTGAAAAGCAAAAAAAATG+AGG | + | chr2_1:18843727-18843746 | None:intergenic | 25.0% |
| ! | AATTGCTCGTGTTTATAATT+GGG | - | chr2_1:18844059-18844078 | Msa0199620:intron | 25.0% |
| !! | TTTTGTCTTGTATGATCATA+CGG | - | chr2_1:18844392-18844411 | Msa0199620:five_prime_UTR | 25.0% |
| CGTAGATAATTACTAACAGT+AGG | - | chr2_1:18839163-18839182 | Msa0199620:intron | 30.0% | |
| AGTATTAAGATGAAAAGGGA+TGG | - | chr2_1:18839196-18839215 | Msa0199620:intron | 30.0% | |
| TTCAACTGAATGTGATTATG+AGG | - | chr2_1:18839227-18839246 | Msa0199620:intron | 30.0% | |
| ! | GGTGAGAAAATTTGTGATTT+TGG | - | chr2_1:18839326-18839345 | Msa0199620:intron | 30.0% |
| ! | GTACTTAGATTTTCATTCTC+TGG | - | chr2_1:18839513-18839532 | Msa0199620:intron | 30.0% |
| TTGAAACTAGAAAGAACCAA+TGG | - | chr2_1:18839947-18839966 | Msa0199620:intron | 30.0% | |
| ! | TAAGATTTCAACTTCTGGAA+AGG | - | chr2_1:18839975-18839994 | Msa0199620:intron | 30.0% |
| ! | AAGCAGTAAACTCTATGTTT+TGG | - | chr2_1:18840048-18840067 | Msa0199620:intron | 30.0% |
| ! | AGCAGTAAACTCTATGTTTT+GGG | - | chr2_1:18840049-18840068 | Msa0199620:intron | 30.0% |
| !!! | TTTCGTTTTGAAAACATGCA+TGG | - | chr2_1:18840101-18840120 | Msa0199620:intron | 30.0% |
| !!! | TTCGTTTTGAAAACATGCAT+GGG | - | chr2_1:18840102-18840121 | Msa0199620:intron | 30.0% |
| TTAAACAAGACTAGACAGTT+TGG | - | chr2_1:18840126-18840145 | Msa0199620:intron | 30.0% | |
| AAAATGCAACAACTTTGGAT+TGG | + | chr2_1:18840195-18840214 | None:intergenic | 30.0% | |
| AGATTTAGACGTTAATGAGT+TGG | - | chr2_1:18840466-18840485 | Msa0199620:intron | 30.0% | |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr2_1:18840478-18840497 | Msa0199620:intron | 30.0% |
| GTTCTATCACAAACCATATT+TGG | + | chr2_1:18840494-18840513 | None:intergenic | 30.0% | |
| ! | TGGTTTGTGATAGAACATTA+TGG | - | chr2_1:18840498-18840517 | Msa0199620:intron | 30.0% |
| ! | TCTAAGCACTTTTCAATATC+CGG | + | chr2_1:18840814-18840833 | None:intergenic | 30.0% |
| CTATTTACTACATCCTTAAG+AGG | - | chr2_1:18841067-18841086 | Msa0199620:intron | 30.0% | |
| AGAAAAGAAAATTGAAGGCA+TGG | + | chr2_1:18841319-18841338 | None:intergenic | 30.0% | |
| ! | ATGCCTTCAATTTTCTTTTC+TGG | - | chr2_1:18841318-18841337 | Msa0199620:intron | 30.0% |
| ! | TGCCTTCAATTTTCTTTTCT+GGG | - | chr2_1:18841319-18841338 | Msa0199620:intron | 30.0% |
| TACCCAGAAAAGAAAATTGA+AGG | + | chr2_1:18841324-18841343 | None:intergenic | 30.0% | |
| GATGATGAATCAACTATTAG+GGG | + | chr2_1:18841407-18841426 | None:intergenic | 30.0% | |
| GAGATGATGAATCAACTATT+AGG | + | chr2_1:18841409-18841428 | None:intergenic | 30.0% | |
| ! | AGTTCTAACTAGAAGAGTTT+AGG | + | chr2_1:18841694-18841713 | None:intergenic | 30.0% |
| TTCACTATACCTTGAATCAT+TGG | - | chr2_1:18841905-18841924 | Msa0199620:intron | 30.0% | |
| AACACAGTGTTGTCAAATAT+CGG | + | chr2_1:18842142-18842161 | None:intergenic | 30.0% | |
| AATGGGAGTTAATTCTACAT+TGG | + | chr2_1:18842192-18842211 | None:intergenic | 30.0% | |
| !! | GTATTTCGGGTTTCTTTAAT+GGG | + | chr2_1:18842209-18842228 | None:intergenic | 30.0% |
| !! | AGTATTTCGGGTTTCTTTAA+TGG | + | chr2_1:18842210-18842229 | None:intergenic | 30.0% |
| AACATTGTCCAAGTTAGAAT+TGG | + | chr2_1:18842254-18842273 | None:intergenic | 30.0% | |
| TCAAAGTCCTCCATTAAATA+AGG | - | chr2_1:18842301-18842320 | Msa0199620:intron | 30.0% | |
| !! | TAAGATGCCTTATTTAATGG+AGG | + | chr2_1:18842311-18842330 | None:intergenic | 30.0% |
| !! | CCTTAAGATGCCTTATTTAA+TGG | + | chr2_1:18842314-18842333 | None:intergenic | 30.0% |
| ! | CCATTAAATAAGGCATCTTA+AGG | - | chr2_1:18842311-18842330 | Msa0199620:intron | 30.0% |
| AGCATGACCCTTATATTAAT+AGG | + | chr2_1:18842496-18842515 | None:intergenic | 30.0% | |
| ! | GCTTGTTAAGGATTCAAAAA+TGG | - | chr2_1:18842527-18842546 | Msa0199620:intron | 30.0% |
| GCTTGTTTAGAAATCTAAAG+AGG | + | chr2_1:18842635-18842654 | None:intergenic | 30.0% | |
| AGTACTGTATGTTTAATGCT+AGG | + | chr2_1:18842774-18842793 | None:intergenic | 30.0% | |
| ! | CTCAAATTTGCATCTTGTTT+AGG | - | chr2_1:18842897-18842916 | Msa0199620:intron | 30.0% |
| ATTACGGATGTAACATCATT+TGG | + | chr2_1:18842928-18842947 | None:intergenic | 30.0% | |
| !!! | GTGTTGATAATTTTCTTGCA+GGG | + | chr2_1:18843025-18843044 | None:intergenic | 30.0% |
| !!! | AGTGTTGATAATTTTCTTGC+AGG | + | chr2_1:18843026-18843045 | None:intergenic | 30.0% |
| ! | GGAATTGATAATCGTTACTT+AGG | + | chr2_1:18843220-18843239 | None:intergenic | 30.0% |
| TTACACTACACAAAATGATG+AGG | + | chr2_1:18843241-18843260 | None:intergenic | 30.0% | |
| ! | TTATGTTTGACTTTGGATAC+AGG | - | chr2_1:18843368-18843387 | Msa0199620:intron | 30.0% |
| ! | AAACTGATTCTGTGTGTTTA+TGG | - | chr2_1:18843448-18843467 | Msa0199620:intron | 30.0% |
| GTTGGAATATTCATTAGAAG+AGG | - | chr2_1:18843488-18843507 | Msa0199620:intron | 30.0% | |
| !!! | AGGTACGTGTATTTTAGTTT+TGG | - | chr2_1:18843508-18843527 | Msa0199620:intron | 30.0% |
| !!! | GGTACGTGTATTTTAGTTTT+GGG | - | chr2_1:18843509-18843528 | Msa0199620:intron | 30.0% |
| ! | ACAATATGATTTTCTGTTGC+AGG | - | chr2_1:18843577-18843596 | Msa0199620:intron | 30.0% |
| !!! | TTGCTGATCTACTGTTTTTA+AGG | - | chr2_1:18843657-18843676 | Msa0199620:intron | 30.0% |
| !!! | TGCTGATCTACTGTTTTTAA+GGG | - | chr2_1:18843658-18843677 | Msa0199620:intron | 30.0% |
| ATAAGAATGCAAAGGAATGA+AGG | + | chr2_1:18843845-18843864 | None:intergenic | 30.0% | |
| CATTCCTTTGCATTCTTATT+AGG | - | chr2_1:18843846-18843865 | Msa0199620:intron | 30.0% | |
| CAATTGCTCGTGTTTATAAT+TGG | - | chr2_1:18844058-18844077 | Msa0199620:intron | 30.0% | |
| TTTGTCTTGTATGATCATAC+GGG | - | chr2_1:18844393-18844412 | Msa0199620:five_prime_UTR | 30.0% | |
| CAAACCTATCTCACTCAATT+AGG | - | chr2_1:18838802-18838821 | Msa0199620:three_prime_UTR | 35.0% | |
| ! | GTGTGAAAGAGTATGTTTAG+CGG | - | chr2_1:18839097-18839116 | Msa0199620:intron | 35.0% |
| !!! | TTTTGGTTTGAATTTCGGAG+TGG | - | chr2_1:18839305-18839324 | Msa0199620:intron | 35.0% |
| ! | GCAAGGTGTTTCATTTCATA+TGG | + | chr2_1:18839605-18839624 | None:intergenic | 35.0% |
| ! | TTTTGTGTGAATGATGTCTG+AGG | - | chr2_1:18839747-18839766 | Msa0199620:intron | 35.0% |
| TCTGAGGATATATTTCTTGC+AGG | - | chr2_1:18839763-18839782 | Msa0199620:intron | 35.0% | |
| TGCAGAAAATGCAACAACTT+TGG | + | chr2_1:18840200-18840219 | None:intergenic | 35.0% | |
| CTACCCCAAATCAATTAGAA+AGG | + | chr2_1:18840273-18840292 | None:intergenic | 35.0% | |
| AGATGTTAGAAAACAGGCTT+AGG | - | chr2_1:18840308-18840327 | Msa0199620:intron | 35.0% | |
| ! | AAAACAGGCTTAGGTTGTTT+GGG | - | chr2_1:18840317-18840336 | Msa0199620:intron | 35.0% |
| CGAAAGAGTAAATCATATGG+AGG | - | chr2_1:18840379-18840398 | Msa0199620:intron | 35.0% | |
| TAAATCATATGGAGGAGAGT+CGG | - | chr2_1:18840387-18840406 | Msa0199620:intron | 35.0% | |
| TACAGACACAGAATAGCATT+TGG | + | chr2_1:18840668-18840687 | None:intergenic | 35.0% | |
| CATAGTAGTGACACTATTTG+TGG | - | chr2_1:18840769-18840788 | Msa0199620:intron | 35.0% | |
| TGAGAAATCAGAACCTCTTA+AGG | + | chr2_1:18841083-18841102 | None:intergenic | 35.0% | |
| ! | TTGTTCTTGTTGTCACATGA+TGG | - | chr2_1:18841162-18841181 | Msa0199620:intron | 35.0% |
| TCAAGCCATTAACTTCTTCA+TGG | + | chr2_1:18841225-18841244 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCCTGCTGGAATT+TGG | - | chr2_1:18841367-18841386 | Msa0199620:intron | 35.0% |
| ! | CTCTTCTAGTTAGAACTCTT+TGG | - | chr2_1:18841697-18841716 | Msa0199620:intron | 35.0% |
| AAGAACAGACCAATGATTCA+AGG | + | chr2_1:18841917-18841936 | None:intergenic | 35.0% | |
| !! | CGTAAAAGCATTAGTTAAGG+AGG | + | chr2_1:18841945-18841964 | None:intergenic | 35.0% |
| !! | GCTCGTAAAAGCATTAGTTA+AGG | + | chr2_1:18841948-18841967 | None:intergenic | 35.0% |
| ! | GTCATAAATGAGTTGGACAT+GGG | + | chr2_1:18841979-18841998 | None:intergenic | 35.0% |
| ! | TGTCATAAATGAGTTGGACA+TGG | + | chr2_1:18841980-18841999 | None:intergenic | 35.0% |
| ! | CAGTCTTGTCATAAATGAGT+TGG | + | chr2_1:18841986-18842005 | None:intergenic | 35.0% |
| TGACATCTACAGGAATGATA+TGG | + | chr2_1:18842009-18842028 | None:intergenic | 35.0% | |
| ATGATTAGAGTGACATCTAC+AGG | + | chr2_1:18842019-18842038 | None:intergenic | 35.0% | |
| ATCCTTCACAAAATTGGCTA+CGG | - | chr2_1:18842095-18842114 | Msa0199620:intron | 35.0% | |
| ! | AAATATCGGTGGTGAGTTTT+TGG | + | chr2_1:18842128-18842147 | None:intergenic | 35.0% |
| GGATAATACTCCACACTTAA+GGG | + | chr2_1:18842233-18842252 | None:intergenic | 35.0% | |
| TGGATAATACTCCACACTTA+AGG | + | chr2_1:18842234-18842253 | None:intergenic | 35.0% | |
| ! | AGGACGTTTTATCTTGGAAA+CGG | + | chr2_1:18842615-18842634 | None:intergenic | 35.0% |
| ! | CTAAAGAGGACGTTTTATCT+TGG | + | chr2_1:18842621-18842640 | None:intergenic | 35.0% |
| AATGCTAACAAGTGACCTAA+GGG | + | chr2_1:18842659-18842678 | None:intergenic | 35.0% | |
| AAATGCTAACAAGTGACCTA+AGG | + | chr2_1:18842660-18842679 | None:intergenic | 35.0% | |
| TCCGTAATGTAGAATGTGAA+TGG | - | chr2_1:18842940-18842959 | Msa0199620:intron | 35.0% | |
| CCCATTCACATTCTACATTA+CGG | + | chr2_1:18842944-18842963 | None:intergenic | 35.0% | |
| CCGTAATGTAGAATGTGAAT+GGG | - | chr2_1:18842941-18842960 | Msa0199620:intron | 35.0% | |
| TTGTATGTTAGTCCTGGAAA+GGG | + | chr2_1:18842996-18843015 | None:intergenic | 35.0% | |
| ! | ATAATTTTCTTGCAGGGTAG+GGG | + | chr2_1:18843019-18843038 | None:intergenic | 35.0% |
| ! | GATAATTTTCTTGCAGGGTA+GGG | + | chr2_1:18843020-18843039 | None:intergenic | 35.0% |
| ! | TGATAATTTTCTTGCAGGGT+AGG | + | chr2_1:18843021-18843040 | None:intergenic | 35.0% |
| TGAAAACTAAGGTTTGTGAG+TGG | - | chr2_1:18843141-18843160 | Msa0199620:intron | 35.0% | |
| TAGTTACTGCTAGTATGCTA+TGG | - | chr2_1:18843184-18843203 | Msa0199620:intron | 35.0% | |
| TGCATCATAAGGCTTCAAAA+TGG | + | chr2_1:18843279-18843298 | None:intergenic | 35.0% | |
| AGCAACAAGAACTTCTAAAC+TGG | + | chr2_1:18843642-18843661 | None:intergenic | 35.0% | |
| CTTGCCTAATAAGAATGCAA+AGG | + | chr2_1:18843853-18843872 | None:intergenic | 35.0% | |
| TATCCCAGATGCATCTATAA+GGG | + | chr2_1:18843954-18843973 | None:intergenic | 35.0% | |
| ATATCCCAGATGCATCTATA+AGG | + | chr2_1:18843955-18843974 | None:intergenic | 35.0% | |
| ATAATTGGGATGTCCATCAA+CGG | - | chr2_1:18844073-18844092 | Msa0199620:intron | 35.0% | |
| CCTATCCTAGAAACTACTTT+GGG | + | chr2_1:18844279-18844298 | None:intergenic | 35.0% | |
| TCCTATCCTAGAAACTACTT+TGG | + | chr2_1:18844280-18844299 | None:intergenic | 35.0% | |
| GTGTATTCTACTCTGCAATT+TGG | - | chr2_1:18844415-18844434 | Msa0199620:five_prime_UTR | 35.0% | |
| TTCTTCGTCTTCATCATCAG+CGG | - | chr2_1:18838732-18838751 | Msa0199620:three_prime_UTR | 40.0% | |
| GAGACCTAATTGAGTGAGAT+AGG | + | chr2_1:18838809-18838828 | None:intergenic | 40.0% | |
| !! | CTCTCGCTTTTCTTCAAGAA+AGG | - | chr2_1:18838842-18838861 | Msa0199620:three_prime_UTR | 40.0% |
| TTATGAAGTGTATGGGGAGT+TGG | - | chr2_1:18839047-18839066 | Msa0199620:intron | 40.0% | |
| TATGGGGAGTTGGATTTGTA+TGG | - | chr2_1:18839057-18839076 | Msa0199620:intron | 40.0% | |
| GTTAACTGCTTCTGTATCAC+TGG | - | chr2_1:18839420-18839439 | Msa0199620:CDS | 40.0% | |
| !! | TTGCATTGGCTTAACACTTG+AGG | - | chr2_1:18839676-18839695 | Msa0199620:intron | 40.0% |
| !! | TGCATTGGCTTAACACTTGA+GGG | - | chr2_1:18839677-18839696 | Msa0199620:intron | 40.0% |
| ! | TCGCATTTTTATGCCAGCAT+AGG | - | chr2_1:18840011-18840030 | Msa0199620:intron | 40.0% |
| !! | TATGTTTTGGGCTCGTGTTA+CGG | - | chr2_1:18840061-18840080 | Msa0199620:intron | 40.0% |
| ! | GAAAACAGGCTTAGGTTGTT+TGG | - | chr2_1:18840316-18840335 | Msa0199620:intron | 40.0% |
| GCGCGAAAGAGTAAATCATA+TGG | - | chr2_1:18840376-18840395 | Msa0199620:intron | 40.0% | |
| AGTCGGATCAAAAAAGGTAG+AGG | - | chr2_1:18840404-18840423 | Msa0199620:intron | 40.0% | |
| AAACCTTATCCCACTAAGTG+GGG | + | chr2_1:18840547-18840566 | None:intergenic | 40.0% | |
| CAAACCTTATCCCACTAAGT+GGG | + | chr2_1:18840548-18840567 | None:intergenic | 40.0% | |
| AGTAGTGACACTATTTGTGG+TGG | - | chr2_1:18840772-18840791 | Msa0199620:intron | 40.0% | |
| ATACCTCTAGACAAAAGGCA+TGG | + | chr2_1:18841136-18841155 | None:intergenic | 40.0% | |
| GTCGTCCATGAAGAAGTTAA+TGG | - | chr2_1:18841217-18841236 | Msa0199620:intron | 40.0% | |
| !!! | GAAAACGTTTTTTTGCCTGC+TGG | - | chr2_1:18841360-18841379 | Msa0199620:intron | 40.0% |
| ATCAATAGCCAAATTCCAGC+AGG | + | chr2_1:18841378-18841397 | None:intergenic | 40.0% | |
| GTACTCATGAACAGAACAAC+AGG | - | chr2_1:18841615-18841634 | Msa0199620:intron | 40.0% | |
| CAACTAGTGACAAAAGGCTT+TGG | + | chr2_1:18841793-18841812 | None:intergenic | 40.0% | |
| ! | CAAAGCCTTTTGTCACTAGT+TGG | - | chr2_1:18841791-18841810 | Msa0199620:intron | 40.0% |
| CAACACCAACTAGTGACAAA+AGG | + | chr2_1:18841799-18841818 | None:intergenic | 40.0% | |
| !! | CTTTTGTCACTAGTTGGTGT+TGG | - | chr2_1:18841797-18841816 | Msa0199620:intron | 40.0% |
| ACGATACATGATAGGACATC+GGG | + | chr2_1:18841843-18841862 | None:intergenic | 40.0% | |
| CACGATACATGATAGGACAT+CGG | + | chr2_1:18841844-18841863 | None:intergenic | 40.0% | |
| TGTCCTATCATGTATCGTGT+CGG | - | chr2_1:18841845-18841864 | Msa0199620:intron | 40.0% | |
| ! | GAATCATTGGTCTGTTCTTC+CGG | - | chr2_1:18841918-18841937 | Msa0199620:intron | 40.0% |
| AAGCATTAGTTAAGGAGGAC+CGG | + | chr2_1:18841940-18841959 | None:intergenic | 40.0% | |
| ! | AATTTTGTGAAGGATGGAGG+CGG | + | chr2_1:18842090-18842109 | None:intergenic | 40.0% |
| ! | GTAGCCAATTTTGTGAAGGA+TGG | + | chr2_1:18842096-18842115 | None:intergenic | 40.0% |
| ACAGTGTTGTCAAATATCGG+TGG | + | chr2_1:18842139-18842158 | None:intergenic | 40.0% | |
| !! | CACACTTAAGGGAGTATTTC+GGG | + | chr2_1:18842222-18842241 | None:intergenic | 40.0% |
| !! | CCACACTTAAGGGAGTATTT+CGG | + | chr2_1:18842223-18842242 | None:intergenic | 40.0% |
| ! | TAACAAGTGCACGCTTGTTA+AGG | - | chr2_1:18842515-18842534 | Msa0199620:intron | 40.0% |
| ATTTCTAAACAAGCGCCCTT+AGG | - | chr2_1:18842641-18842660 | Msa0199620:intron | 40.0% | |
| GAGTTGTTCAAACTCTGTGA+AGG | + | chr2_1:18842797-18842816 | None:intergenic | 40.0% | |
| GTTGTATGTTAGTCCTGGAA+AGG | + | chr2_1:18842997-18843016 | None:intergenic | 40.0% | |
| !!! | GGAACTTATTGCCGATTTTG+AGG | - | chr2_1:18843389-18843408 | Msa0199620:intron | 40.0% |
| CACAGAATCAGTTTCTTCGA+TGG | + | chr2_1:18843442-18843461 | None:intergenic | 40.0% | |
| TGATTCTGTGTGTTTATGGC+TGG | - | chr2_1:18843452-18843471 | Msa0199620:intron | 40.0% | |
| GATTCTGTGTGTTTATGGCT+GGG | - | chr2_1:18843453-18843472 | Msa0199620:intron | 40.0% | |
| AGACCTGAGTAATTGTCGTT+TGG | + | chr2_1:18843685-18843704 | None:intergenic | 40.0% | |
| TATGTTAACATCAGAGGGAG+AGG | - | chr2_1:18843768-18843787 | Msa0199620:intron | 40.0% | |
| ATGTTAACATCAGAGGGAGA+GGG | - | chr2_1:18843769-18843788 | Msa0199620:intron | 40.0% | |
| ! | AAATGTGCTGCTGCAGTTTA+TGG | + | chr2_1:18843821-18843840 | None:intergenic | 40.0% |
| ACACCCTTATAGATGCATCT+GGG | - | chr2_1:18843948-18843967 | Msa0199620:intron | 40.0% | |
| GACGCATAATCTAAGCTGAA+CGG | + | chr2_1:18844192-18844211 | None:intergenic | 40.0% | |
| GTTTGCCCAAAGTAGTTTCT+AGG | - | chr2_1:18844271-18844290 | Msa0199620:CDS | 40.0% | |
| !! | CCCAAAGTAGTTTCTAGGAT+AGG | - | chr2_1:18844276-18844295 | Msa0199620:CDS | 40.0% |
| CGATTGCAGTGCTTCAACAA+TGG | - | chr2_1:18838705-18838724 | Msa0199620:three_prime_UTR | 45.0% | |
| ACAGAACGAAGAGGAATACC+AGG | - | chr2_1:18838757-18838776 | Msa0199620:three_prime_UTR | 45.0% | |
| CGACAAGTTAGTATCGTGTC+CGG | - | chr2_1:18839123-18839142 | Msa0199620:intron | 45.0% | |
| !! | CGAAGTACTGACATAGACAC+CGG | + | chr2_1:18839145-18839164 | None:intergenic | 45.0% |
| ! | GGTAGCTTGCAATGTGAATG+AGG | - | chr2_1:18839473-18839492 | Msa0199620:intron | 45.0% |
| TTGCAGGCTTCAGCAATACA+AGG | - | chr2_1:18839779-18839798 | Msa0199620:intron | 45.0% | |
| !! | ATGTTTTGGGCTCGTGTTAC+GGG | - | chr2_1:18840062-18840081 | Msa0199620:intron | 45.0% |
| GAGGAGAGTCGGATCAAAAA+AGG | - | chr2_1:18840398-18840417 | Msa0199620:intron | 45.0% | |
| CCAAACCTTATCCCACTAAG+TGG | + | chr2_1:18840549-18840568 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGGTT+TGG | - | chr2_1:18840546-18840565 | Msa0199620:intron | 45.0% | |
| ! | CACTATTTGTGGTGGTTTGC+AGG | - | chr2_1:18840780-18840799 | Msa0199620:intron | 45.0% |
| ! | TGGTTTGCAGGCTAAGATAC+CGG | - | chr2_1:18840792-18840811 | Msa0199620:intron | 45.0% |
| TGCGACTTTGCAAGCAAAGA+AGG | - | chr2_1:18840840-18840859 | Msa0199620:intron | 45.0% | |
| GCGACTTTGCAAGCAAAGAA+GGG | - | chr2_1:18840841-18840860 | Msa0199620:intron | 45.0% | |
| ! | TGACCATGCCTTTTGTCTAG+AGG | - | chr2_1:18841130-18841149 | Msa0199620:intron | 45.0% |
| TCTTCATGGACGACACAAAC+AGG | + | chr2_1:18841211-18841230 | None:intergenic | 45.0% | |
| GCATCGTGAAGTCCTAGAAA+AGG | - | chr2_1:18841544-18841563 | Msa0199620:intron | 45.0% | |
| CTTGTGCACTAATGTGCAGA+TGG | + | chr2_1:18841723-18841742 | None:intergenic | 45.0% | |
| CATCCGACACGATACATGAT+AGG | + | chr2_1:18841851-18841870 | None:intergenic | 45.0% | |
| !!! | CAGTTTTTGGCTCTCTGTCA+TGG | + | chr2_1:18842058-18842077 | None:intergenic | 45.0% |
| GCCTCCATCCTTCACAAAAT+TGG | - | chr2_1:18842089-18842108 | Msa0199620:intron | 45.0% | |
| ! | GCCAATTTTGTGAAGGATGG+AGG | + | chr2_1:18842093-18842112 | None:intergenic | 45.0% |
| CTTCACAAAATTGGCTACGG+CGG | - | chr2_1:18842098-18842117 | Msa0199620:intron | 45.0% | |
| CCGAAATACTCCCTTAAGTG+TGG | - | chr2_1:18842220-18842239 | Msa0199620:CDS | 45.0% | |
| TAGGTAAAATCGTCCAGAGG+GGG | + | chr2_1:18842755-18842774 | None:intergenic | 45.0% | |
| CTAGGTAAAATCGTCCAGAG+GGG | + | chr2_1:18842756-18842775 | None:intergenic | 45.0% | |
| GCTAGGTAAAATCGTCCAGA+GGG | + | chr2_1:18842757-18842776 | None:intergenic | 45.0% | |
| TGCTAGGTAAAATCGTCCAG+AGG | + | chr2_1:18842758-18842777 | None:intergenic | 45.0% | |
| AGAATGTGAATGGGTGTGCT+TGG | - | chr2_1:18842950-18842969 | Msa0199620:intron | 45.0% | |
| TAGGGGTTGTATGTTAGTCC+TGG | + | chr2_1:18843002-18843021 | None:intergenic | 45.0% | |
| TGCTAGTATGCTATGGACTC+TGG | - | chr2_1:18843191-18843210 | Msa0199620:intron | 45.0% | |
| GCCTTCTGACACCTCAAAAT+CGG | + | chr2_1:18843403-18843422 | None:intergenic | 45.0% | |
| GCTGGGAGCAAATGTTATGT+TGG | - | chr2_1:18843470-18843489 | Msa0199620:intron | 45.0% | |
| !! | AACTGGCTCTAGCATTATCC+AGG | + | chr2_1:18843625-18843644 | None:intergenic | 45.0% |
| GGACCAAACGACAATTACTC+AGG | - | chr2_1:18843679-18843698 | Msa0199620:intron | 45.0% | |
| TGTTAACATCAGAGGGAGAG+GGG | - | chr2_1:18843770-18843789 | Msa0199620:intron | 45.0% | |
| !! | TCTATAAGGGTGTCCATGGT+AGG | + | chr2_1:18843941-18843960 | None:intergenic | 45.0% |
| !! | TGCATCTATAAGGGTGTCCA+TGG | + | chr2_1:18843945-18843964 | None:intergenic | 45.0% |
| GACACCCTTATAGATGCATC+TGG | - | chr2_1:18843947-18843966 | Msa0199620:intron | 45.0% | |
| CTTGTTGAGTTCTCCGTTGA+TGG | + | chr2_1:18844089-18844108 | None:intergenic | 45.0% | |
| TTCCTTCCTGTCTGTAGTTC+TGG | - | chr2_1:18844249-18844268 | Msa0199620:CDS | 45.0% | |
| AACCAGAACTACAGACAGGA+AGG | + | chr2_1:18844254-18844273 | None:intergenic | 45.0% | |
| TCTTCAACGAACTGAGCACC+TGG | + | chr2_1:18838778-18838797 | None:intergenic | 50.0% | |
| TTTATGCCAGCATAGGCTGC+TGG | - | chr2_1:18840018-18840037 | Msa0199620:intron | 50.0% | |
| GGTTGTTTGGGCATGTAGAG+AGG | - | chr2_1:18840329-18840348 | Msa0199620:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr2_1:18840543-18840562 | None:intergenic | 50.0% | |
| ! | TTGCAAGCAAAGAAGGGCAC+CGG | - | chr2_1:18840847-18840866 | Msa0199620:intron | 50.0% |
| AGTCCTCAAACGAACCTCAC+CGG | + | chr2_1:18840869-18840888 | None:intergenic | 50.0% | |
| ! | GAGTTGGACATGGGTTGAGA+CGG | + | chr2_1:18841970-18841989 | None:intergenic | 50.0% |
| CTCTCTGTCATGGACAACAC+TGG | + | chr2_1:18842048-18842067 | None:intergenic | 50.0% | |
| ! | GCGGCTGGTATGACAGTTTT+TGG | + | chr2_1:18842071-18842090 | None:intergenic | 50.0% |
| ! | CGCCGTAGCCAATTTTGTGA+AGG | + | chr2_1:18842100-18842119 | None:intergenic | 50.0% |
| TTATTGCATCATCCCCCCTC+TGG | - | chr2_1:18842739-18842758 | Msa0199620:intron | 50.0% | |
| AGGTAAAATCGTCCAGAGGG+GGG | + | chr2_1:18842754-18842773 | None:intergenic | 50.0% | |
| TGTTAGTCCTGGAAAGGGTG+CGG | + | chr2_1:18842991-18843010 | None:intergenic | 50.0% | |
| !!! | GCCGATTTTGAGGTGTCAGA+AGG | - | chr2_1:18843399-18843418 | Msa0199620:intron | 50.0% |
| GGCAAACCAGAACTACAGAC+AGG | + | chr2_1:18844258-18844277 | None:intergenic | 50.0% | |
| TCAGCGGTGACAGAACGAAG+AGG | - | chr2_1:18838748-18838767 | Msa0199620:three_prime_UTR | 55.0% | |
| TTTCAGCCAGCAGCCTATGC+TGG | + | chr2_1:18840027-18840046 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr2_1:18840535-18840554 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr2_1:18840534-18840553 | Msa0199620:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr2_1:18840535-18840554 | Msa0199620:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr2_1:18840541-18840560 | Msa0199620:intron | 55.0% | |
| CATGGTAGGCATGAAGCTGG+AGG | + | chr2_1:18843927-18843946 | None:intergenic | 55.0% | |
| CTCCAGCTTCATGCCTACCA+TGG | - | chr2_1:18843925-18843944 | Msa0199620:intron | 55.0% | |
| GTCCATGGTAGGCATGAAGC+TGG | + | chr2_1:18843930-18843949 | None:intergenic | 55.0% | |
| TGAAGCTCCTCGCGCAGCAA+AGG | - | chr2_1:18839811-18839830 | Msa0199620:intron | 60.0% | |
| GAAGCTCCTCGCGCAGCAAA+GGG | - | chr2_1:18839812-18839831 | Msa0199620:intron | 60.0% | |
| GAAGTTCCCTTTGCTGCGCG+AGG | + | chr2_1:18839821-18839840 | None:intergenic | 60.0% | |
| CGCGCAGCAAAGGGAACTTC+AGG | - | chr2_1:18839821-18839840 | Msa0199620:intron | 60.0% | |
| !! | AGCAAAGAAGGGCACCGGTG+AGG | - | chr2_1:18840852-18840871 | Msa0199620:intron | 60.0% |
| ! | GCACCGGTGAGGTTCGTTTG+AGG | - | chr2_1:18840863-18840882 | Msa0199620:intron | 60.0% |
| TTGTGAAGGATGGAGGCGGC+TGG | + | chr2_1:18842086-18842105 | None:intergenic | 60.0% | |
| GTTCAAGCCGCACCCTTTCC+AGG | - | chr2_1:18842981-18843000 | Msa0199620:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 18838616 | 18844465 | 18838616 | ID=Msa0199620;Name=Msa0199620 |
| chr2_1 | mRNA | 18838616 | 18844465 | 18838616 | ID=Msa0199620-mRNA-1;Parent=Msa0199620;Name=Msa0199620-mRNA-1;_AED=0.08;_eAED=0.08;_QI=108|1|1|1|1|1|6|325|192 |
| chr2_1 | exon | 18838616 | 18839027 | 18838616 | ID=Msa0199620-mRNA-1:exon:7892;Parent=Msa0199620-mRNA-1 |
| chr2_1 | exon | 18839381 | 18839482 | 18839381 | ID=Msa0199620-mRNA-1:exon:7891;Parent=Msa0199620-mRNA-1 |
| chr2_1 | exon | 18839572 | 18839691 | 18839572 | ID=Msa0199620-mRNA-1:exon:7890;Parent=Msa0199620-mRNA-1 |
| chr2_1 | exon | 18842208 | 18842279 | 18842208 | ID=Msa0199620-mRNA-1:exon:7889;Parent=Msa0199620-mRNA-1 |
| chr2_1 | exon | 18843239 | 18843296 | 18843239 | ID=Msa0199620-mRNA-1:exon:7888;Parent=Msa0199620-mRNA-1 |
| chr2_1 | exon | 18844218 | 18844465 | 18844218 | ID=Msa0199620-mRNA-1:exon:7887;Parent=Msa0199620-mRNA-1 |
| chr2_1 | five_prime_UTR | 18844358 | 18844465 | 18844358 | ID=Msa0199620-mRNA-1:five_prime_utr;Parent=Msa0199620-mRNA-1 |
| chr2_1 | CDS | 18844218 | 18844357 | 18844218 | ID=Msa0199620-mRNA-1:cds;Parent=Msa0199620-mRNA-1 |
| chr2_1 | CDS | 18843239 | 18843296 | 18843239 | ID=Msa0199620-mRNA-1:cds;Parent=Msa0199620-mRNA-1 |
| chr2_1 | CDS | 18842208 | 18842279 | 18842208 | ID=Msa0199620-mRNA-1:cds;Parent=Msa0199620-mRNA-1 |
| chr2_1 | CDS | 18839572 | 18839691 | 18839572 | ID=Msa0199620-mRNA-1:cds;Parent=Msa0199620-mRNA-1 |
| chr2_1 | CDS | 18839381 | 18839482 | 18839381 | ID=Msa0199620-mRNA-1:cds;Parent=Msa0199620-mRNA-1 |
| chr2_1 | CDS | 18838941 | 18839027 | 18838941 | ID=Msa0199620-mRNA-1:cds;Parent=Msa0199620-mRNA-1 |
| chr2_1 | three_prime_UTR | 18838616 | 18838940 | 18838616 | ID=Msa0199620-mRNA-1:three_prime_utr;Parent=Msa0199620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
