Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199720 | XP_003594738.1 | 98.851 | 609 | 6 | 1 | 1 | 609 | 1 | 608 | 0.0 | 1236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199720 | sp|Q93VT8|ACLB1_ORYSJ | 91.461 | 609 | 51 | 1 | 1 | 609 | 1 | 608 | 0.0 | 1139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199720 | A2Q2V1 | 98.851 | 609 | 6 | 1 | 1 | 609 | 1 | 608 | 0.0 | 1236 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044170 | Msa0199720 | 0.820375 | 7.091139e-53 | -8.615850e-47 |
| Msa0074670 | Msa0199720 | 0.831597 | 1.525549e-55 | -8.615850e-47 |
| Msa0090770 | Msa0199720 | 0.803726 | 3.037685e-49 | -8.615850e-47 |
| Msa0090850 | Msa0199720 | 0.833783 | 4.373000e-56 | -8.615850e-47 |
| Msa0183700 | Msa0199720 | 0.863351 | 2.647958e-64 | -8.615850e-47 |
| Msa0199720 | Msa0242260 | 0.948471 | 8.845426e-107 | -8.615850e-47 |
| Msa0199720 | Msa0280470 | 0.982230 | 1.464068e-154 | -8.615850e-47 |
| Msa0199720 | Msa0319690 | 0.965224 | 2.502209e-124 | -8.615850e-47 |
| Msa0199720 | Msa0421440 | 0.848249 | 6.911603e-60 | -8.615850e-47 |
| Msa0199720 | Msa0437540 | 0.832415 | 9.575567e-56 | -8.615850e-47 |
| Msa0199720 | Msa0601920 | 0.800443 | 1.437948e-48 | -8.615850e-47 |
| Msa0199720 | Msa0704470 | 0.801255 | 9.814542e-49 | -8.615850e-47 |
| Msa0199720 | Msa0745670 | 0.813195 | 2.894540e-51 | -8.615850e-47 |
| Msa0199720 | Msa0758400 | 0.832093 | 1.150681e-55 | -8.615850e-47 |
| Msa0199720 | Msa1040730 | 0.831350 | 1.754697e-55 | -8.615850e-47 |
| Msa0199720 | Msa1053990 | 0.829475 | 5.043334e-55 | -8.615850e-47 |
| Msa0199720 | Msa1141250 | 0.821637 | 3.632072e-53 | -8.615850e-47 |
| Msa0199720 | Msa1175380 | 0.816383 | 5.690397e-52 | -8.615850e-47 |
| Msa0199720 | Msa1277350 | 0.819798 | 9.611012e-53 | -8.615850e-47 |
| Msa0199720 | Msa1320530 | 0.807603 | 4.663435e-50 | -8.615850e-47 |
| Msa0199720 | Msa1335970 | 0.805107 | 1.566228e-49 | -8.615850e-47 |
| Msa0199720 | Msa1463590 | 0.805330 | 1.406625e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199720 | MtrunA17_Chr2g0294381 | 98.851 | 609 | 6 | 1 | 1 | 609 | 1 | 608 | 0.0 | 1236 |
| Msa0199720 | MtrunA17_Chr6g0481761 | 32.061 | 262 | 163 | 5 | 57 | 317 | 71 | 318 | 1.55e-20 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0199720 | AT3G06650.1 | 92.282 | 609 | 46 | 1 | 1 | 609 | 1 | 608 | 0.0 | 1133 |
| Msa0199720 | AT3G06650.2 | 92.282 | 609 | 46 | 1 | 1 | 609 | 1 | 608 | 0.0 | 1133 |
| Msa0199720 | AT5G49460.2 | 92.118 | 609 | 47 | 1 | 1 | 609 | 1 | 608 | 0.0 | 1128 |
| Msa0199720 | AT5G49460.1 | 92.118 | 609 | 47 | 1 | 1 | 609 | 1 | 608 | 0.0 | 1128 |
| Msa0199720 | AT5G23250.1 | 32.824 | 262 | 161 | 5 | 57 | 317 | 89 | 336 | 9.01e-27 | 112 |
| Msa0199720 | AT5G08300.1 | 31.298 | 262 | 165 | 5 | 57 | 317 | 94 | 341 | 2.02e-24 | 105 |
| Msa0199720 | AT5G23250.2 | 33.184 | 223 | 134 | 5 | 57 | 278 | 89 | 297 | 9.21e-23 | 99.4 |
| Msa0199720 | AT5G23250.3 | 31.765 | 170 | 104 | 4 | 57 | 225 | 89 | 247 | 6.48e-13 | 69.7 |
Find 201 sgRNAs with CRISPR-Local
Find 397 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAAGAAACATTTGACAAAT+TGG | 0.209154 | 2_1:-18995910 | Msa0199720:intron |
| AAGAGAATTAAGTTTAAAAT+TGG | 0.225262 | 2_1:+18993781 | None:intergenic |
| TGTTTCAAATTAGCATCTTT+TGG | 0.239004 | 2_1:-18993932 | Msa0199720:three_prime_UTR |
| ATGGTTTGGCAGGTTGTTAT+TGG | 0.248275 | 2_1:-18997388 | Msa0199720:intron |
| TTACAATCGGTCCACGATTT+GGG | 0.250838 | 2_1:-18994991 | Msa0199720:CDS |
| CTTACAATCGGTCCACGATT+TGG | 0.277220 | 2_1:-18994992 | Msa0199720:CDS |
| AATAAAATATGAACTTGATT+TGG | 0.296971 | 2_1:+18999531 | None:intergenic |
| AGCTAAAAGTGGCGGTGATA+TGG | 0.322091 | 2_1:-18996015 | Msa0199720:CDS |
| CACTCTTGATTGCAGTGTTA+AGG | 0.328695 | 2_1:+18995714 | None:intergenic |
| TGAACCCGGGTTAATTATTC+CGG | 0.332657 | 2_1:+18998175 | None:intergenic |
| GGAATTCGTGTGGCAGGAAT+AGG | 0.332798 | 2_1:-18994679 | Msa0199720:CDS |
| TGAATGCCTCCGACAGTGGC+TGG | 0.342723 | 2_1:+18997364 | None:intergenic |
| TTGGTGTTGGTTAGATTAGA+TGG | 0.345847 | 2_1:+18999489 | None:intergenic |
| GTGGCTGCTTCAATCTCTTC+TGG | 0.346256 | 2_1:+18994029 | None:intergenic |
| AATTTAGTTCTTAATGTAGA+TGG | 0.352341 | 2_1:-18994412 | Msa0199720:CDS |
| ATTGATGAAATTGTTGAGAT+TGG | 0.353667 | 2_1:-18994328 | Msa0199720:CDS |
| CCTGTTGTTGCCTGGGTTAG+TGG | 0.356976 | 2_1:-18996184 | Msa0199720:CDS |
| CTGTTCTTAGATCTTCTTGC+TGG | 0.361782 | 2_1:-18994376 | Msa0199720:CDS |
| TCCACCATGAAAAGCTTCTA+TGG | 0.369141 | 2_1:-18993667 | Msa0199720:three_prime_UTR |
| TCCATTATTGAAAAGGGCTT+TGG | 0.369219 | 2_1:-18995493 | Msa0199720:CDS |
| CTCTCTCGTGTTGTTGGTGT+TGG | 0.370672 | 2_1:+18999476 | None:intergenic |
| AACACATACGTAGCATGAAC+TGG | 0.370784 | 2_1:+18998107 | None:intergenic |
| AATAAATTGAGTACAGTAAC+GGG | 0.379099 | 2_1:+18995426 | None:intergenic |
| ATAGCAACAACTCTAATTGT+AGG | 0.383360 | 2_1:+18997550 | None:intergenic |
| TTAGATCTTCTTGCTGGTAG+TGG | 0.383547 | 2_1:-18994370 | Msa0199720:CDS |
| CTTAATGTAGATGGTGCAAT+TGG | 0.385167 | 2_1:-18994403 | Msa0199720:CDS |
| CATGTCTTCCATTATTGAAA+AGG | 0.386634 | 2_1:-18995500 | Msa0199720:CDS |
| AATTTCATCAATCTCTTGCT+TGG | 0.397141 | 2_1:+18994339 | None:intergenic |
| GATCACGGTCCTTGTGTCTC+TGG | 0.399860 | 2_1:-18995198 | Msa0199720:CDS |
| CTAGTTTCCAGTCTCGTATC+AGG | 0.402509 | 2_1:-18995135 | Msa0199720:intron |
| TCCATTGCCCGTGTAACTAA+TGG | 0.404849 | 2_1:-18996621 | Msa0199720:CDS |
| TTTGTTCTTGCACGATCCAT+TGG | 0.408219 | 2_1:-18994289 | Msa0199720:CDS |
| ATGGTCAGATAGAGTGGAAC+CGG | 0.412111 | 2_1:+18996447 | None:intergenic |
| ATATGCCCGGTCAAACAATA+AGG | 0.415796 | 2_1:-18997482 | Msa0199720:CDS |
| AAGAACTAAATTATTTGCCT+TGG | 0.423578 | 2_1:+18994423 | None:intergenic |
| TCCCATGGGTGGCGGTATAG+TGG | 0.425910 | 2_1:+18994010 | None:intergenic |
| CTCACCTCTGTCATCAGAAA+TGG | 0.429708 | 2_1:+18995658 | None:intergenic |
| AAAATCATTCTAGCAAATAT+CGG | 0.429813 | 2_1:+18993897 | None:intergenic |
| TCACCACCTTATTGTTTGAC+CGG | 0.430578 | 2_1:+18997476 | None:intergenic |
| TGTGAATCAGGATCAAGAAT+AGG | 0.437764 | 2_1:-18994552 | Msa0199720:intron |
| ATCTTACAACACTAATTTAG+CGG | 0.439466 | 2_1:+18993870 | None:intergenic |
| TTTAAAATCGGTGACACAGC+TGG | 0.440534 | 2_1:-18997331 | Msa0199720:CDS |
| CTCTACAGGCCTGGATCTGT+TGG | 0.440870 | 2_1:-18997280 | Msa0199720:CDS |
| TAATCCAGTCCAAGCTCTAC+AGG | 0.442431 | 2_1:-18997294 | Msa0199720:CDS |
| ATGTCTTCCATTATTGAAAA+GGG | 0.443957 | 2_1:-18995499 | Msa0199720:CDS |
| TTTGCTATAGGCATTGCAAT+TGG | 0.444653 | 2_1:-18996484 | Msa0199720:intron |
| CCACTAACCCAGGCAACAAC+AGG | 0.448443 | 2_1:+18996184 | None:intergenic |
| CTATTGTGACAGCGAGGGCT+GGG | 0.451031 | 2_1:-18995164 | Msa0199720:CDS |
| ACTATTGTGACAGCGAGGGC+TGG | 0.452325 | 2_1:-18995165 | Msa0199720:CDS |
| CACGATCCATTGGTCTGATC+GGG | 0.453022 | 2_1:-18994279 | Msa0199720:intron |
| TGTTGAAGGTATGAAGAAGA+AGG | 0.453548 | 2_1:-18994701 | Msa0199720:CDS |
| GAATTCGTGTGGCAGGAATA+GGG | 0.454853 | 2_1:-18994678 | Msa0199720:CDS |
| AGAGAAACACCATCAGTTGC+CGG | 0.456727 | 2_1:-18998194 | Msa0199720:CDS |
| TGACCAAACCTGTTGTTGCC+TGG | 0.457191 | 2_1:-18996192 | Msa0199720:CDS |
| ATTGCAGTGTTAAGGTCCTC+AGG | 0.457830 | 2_1:+18995722 | None:intergenic |
| GTGAATCAGGATCAAGAATA+GGG | 0.458843 | 2_1:-18994551 | Msa0199720:intron |
| CTGATACGAGACTGGAAACT+AGG | 0.460049 | 2_1:+18995136 | None:intergenic |
| ACACCTTACGAGTTTGTTGA+AGG | 0.463679 | 2_1:-18994715 | Msa0199720:CDS |
| AAAACAGAGCTTGCGTAGTA+CGG | 0.466683 | 2_1:+18998386 | None:intergenic |
| GTAACAGGTTTGCTTACAAT+CGG | 0.469733 | 2_1:-18995004 | Msa0199720:intron |
| ATAGATCTGGTTCTAAATCA+TGG | 0.470533 | 2_1:-18998428 | Msa0199720:exon |
| CAATTGCTTGGTGTCTGACT+CGG | 0.472128 | 2_1:+18997510 | None:intergenic |
| TGATGCTGCTCGCTACTTCA+AGG | 0.473661 | 2_1:-18994957 | Msa0199720:CDS |
| GCGTGATGAATATTCTTTAG+TGG | 0.474700 | 2_1:-18996236 | Msa0199720:CDS |
| AACCGAGTTCAAATCAAATC+AGG | 0.475740 | 2_1:-18999320 | Msa0199720:intron |
| AACCCAGGCAACAACAGGTT+TGG | 0.475786 | 2_1:+18996189 | None:intergenic |
| TCAAAAGCTTCATACGAAGT+AGG | 0.478673 | 2_1:+18995942 | None:intergenic |
| GCACGATCCATTGGTCTGAT+CGG | 0.479197 | 2_1:-18994280 | Msa0199720:CDS |
| CAGTGCCGCCGCATCATCCA+TGG | 0.484294 | 2_1:-18997587 | Msa0199720:CDS |
| TTCAAATCGGAAGTACAATT+CGG | 0.484642 | 2_1:-18996145 | Msa0199720:CDS |
| GCTATAGGCATTGCAATTGG+AGG | 0.485145 | 2_1:-18996481 | Msa0199720:intron |
| GCCATTAGTTACACGGGCAA+TGG | 0.485641 | 2_1:+18996620 | None:intergenic |
| TTGTGCAACACTCTTCAAAT+CGG | 0.486586 | 2_1:-18996158 | Msa0199720:CDS |
| CAGTCCAAGCTCTACAGGCC+TGG | 0.486666 | 2_1:-18997289 | Msa0199720:CDS |
| ATGGTGGAAATTATATGAGT+TGG | 0.486743 | 2_1:+18995677 | None:intergenic |
| AATCAAGCACTAAGAGAAGC+TGG | 0.488327 | 2_1:-18995975 | Msa0199720:CDS |
| TTACTGTACTCAATTTATTG+AGG | 0.489510 | 2_1:-18995422 | Msa0199720:intron |
| GAAACGAATCCAACAGATCC+AGG | 0.490185 | 2_1:+18997271 | None:intergenic |
| AAAATCAAGCATCCGCTGGA+TGG | 0.495674 | 2_1:+18998345 | None:intergenic |
| GTGTAGAGTACATCCTCCCA+TGG | 0.496100 | 2_1:+18993995 | None:intergenic |
| ACTTCAAGGATGCTCATGAC+AGG | 0.497602 | 2_1:-18994943 | Msa0199720:CDS |
| CACCACCTTATTGTTTGACC+GGG | 0.498514 | 2_1:+18997477 | None:intergenic |
| GTTGTTGCTATTATTGCTGA+AGG | 0.501537 | 2_1:-18997538 | Msa0199720:CDS |
| TGTTGGTTAGATTAGATGGA+TGG | 0.502516 | 2_1:+18999493 | None:intergenic |
| AGATCCAGGCCTGTAGAGCT+TGG | 0.502863 | 2_1:+18997285 | None:intergenic |
| CTTCAATCTCTTCTGGTCAA+AGG | 0.503199 | 2_1:+18994036 | None:intergenic |
| GGAGGAGTAAATTCCTTCAC+TGG | 0.510829 | 2_1:+18995752 | None:intergenic |
| AAGAAGGGAATTCGTGTGGC+AGG | 0.511183 | 2_1:-18994685 | Msa0199720:CDS |
| GAATGCCTCCGACAGTGGCT+GGG | 0.511687 | 2_1:+18997365 | None:intergenic |
| GGCATATGCAATCAATTGCT+TGG | 0.512682 | 2_1:+18997498 | None:intergenic |
| AGACAGAGGAGAAGAGTGAG+TGG | 0.513452 | 2_1:+18999347 | None:intergenic |
| TTAAGGTCCTCAGGGATTTG+TGG | 0.514837 | 2_1:+18995731 | None:intergenic |
| TTAATTATTCCGGCAACTGA+TGG | 0.515691 | 2_1:+18998185 | None:intergenic |
| AAACAGAGCTTGCGTAGTAC+GGG | 0.515815 | 2_1:+18998387 | None:intergenic |
| AAATCAAGCATCCGCTGGAT+GGG | 0.516250 | 2_1:+18998346 | None:intergenic |
| GTTAAAATGATAGTAGTGCT+TGG | 0.517378 | 2_1:-18996271 | Msa0199720:CDS |
| GGTGAGGAGCCATGCTATGC+TGG | 0.519134 | 2_1:-18995529 | Msa0199720:CDS |
| GTAACTAATGGCATTTATGA+AGG | 0.519844 | 2_1:-18996609 | Msa0199720:intron |
| GTTGAGATTGGATATCTGAA+TGG | 0.521018 | 2_1:-18994316 | Msa0199720:CDS |
| AATGGAGTTGTATAATTCGT+TGG | 0.525091 | 2_1:+18996638 | None:intergenic |
| TTGGTTAGATTAGATGGATG+GGG | 0.526363 | 2_1:+18999495 | None:intergenic |
| CAGGCCTGTAGAGCTTGGAC+TGG | 0.527346 | 2_1:+18997290 | None:intergenic |
| AATTGCTTGGTGTCTGACTC+GGG | 0.527898 | 2_1:+18997511 | None:intergenic |
| AGCAATTGATTGCATATGCC+CGG | 0.531350 | 2_1:-18997495 | Msa0199720:CDS |
| AGCCACTATACCGCCACCCA+TGG | 0.531519 | 2_1:-18994012 | Msa0199720:CDS |
| TGTTGCTATTATTGCTGAAG+GGG | 0.531984 | 2_1:-18997536 | Msa0199720:CDS |
| GGTTTGTCAACAGATAGATC+TGG | 0.532123 | 2_1:-18998441 | Msa0199720:intron |
| GACCAAACCTGTTGTTGCCT+GGG | 0.532754 | 2_1:-18996191 | Msa0199720:CDS |
| ATAATTAACCCGGGTTCAGA+AGG | 0.534447 | 2_1:-18998170 | Msa0199720:CDS |
| TTGAGATTGGATATCTGAAT+GGG | 0.537917 | 2_1:-18994315 | Msa0199720:CDS |
| AAATGAAAAGAAAGAGAATG+AGG | 0.538643 | 2_1:+18999385 | None:intergenic |
| ACTGTCGGAGGCATTCAAGC+TGG | 0.543206 | 2_1:-18997358 | Msa0199720:CDS |
| ATAGTAGTGCTTGGAGAGCT+TGG | 0.544963 | 2_1:-18996262 | Msa0199720:CDS |
| GTTGGTTAGATTAGATGGAT+GGG | 0.546742 | 2_1:+18999494 | None:intergenic |
| AGCTTGAATGCCTCCGACAG+TGG | 0.546929 | 2_1:+18997360 | None:intergenic |
| GTTGAAGGTATGAAGAAGAA+GGG | 0.547328 | 2_1:-18994700 | Msa0199720:CDS |
| CATAAATGCCATTAGTTACA+CGG | 0.547559 | 2_1:+18996613 | None:intergenic |
| TGTGACAGCGAGGGCTGGGA+AGG | 0.547881 | 2_1:-18995160 | Msa0199720:CDS |
| TACAATCGGTCCACGATTTG+GGG | 0.548454 | 2_1:-18994990 | Msa0199720:CDS |
| TTCTGATCTCTGTTCTGTCG+TGG | 0.549275 | 2_1:-18993750 | Msa0199720:three_prime_UTR |
| TGATTTGATTTGAACTCGGT+TGG | 0.553908 | 2_1:+18999322 | None:intergenic |
| GTGTGGCAGGAATAGGGCAC+AGG | 0.554433 | 2_1:-18994672 | Msa0199720:intron |
| TTGTTGCTATTATTGCTGAA+GGG | 0.556004 | 2_1:-18997537 | Msa0199720:CDS |
| TATTCCATGTATTTCACAGA+AGG | 0.559340 | 2_1:+18994475 | None:intergenic |
| ATTTGCCTTGGTGAGAGTGT+AGG | 0.562301 | 2_1:+18994435 | None:intergenic |
| CAATAAATTGAGTACAGTAA+CGG | 0.562345 | 2_1:+18995425 | None:intergenic |
| GACAGAGGAGAAGAGTGAGT+GGG | 0.562983 | 2_1:+18999348 | None:intergenic |
| AATCAAAATCAAGCATCCGC+TGG | 0.563627 | 2_1:+18998341 | None:intergenic |
| ACCTCTGTCATCAGAAATGG+TGG | 0.563725 | 2_1:+18995661 | None:intergenic |
| GCCACTATACCGCCACCCAT+GGG | 0.567325 | 2_1:-18994011 | Msa0199720:CDS |
| GTTATTGGCCCAGCCACTGT+CGG | 0.568480 | 2_1:-18997373 | Msa0199720:CDS |
| GTATTTACCTGATACGAGAC+TGG | 0.568810 | 2_1:+18995128 | None:intergenic |
| TTAGTGGAAGCCCTAAAACA+AGG | 0.569998 | 2_1:-18996220 | Msa0199720:CDS |
| AGCAGCCATGGATGATGCGG+CGG | 0.570057 | 2_1:+18997582 | None:intergenic |
| AGTGTAGGTTTCAACTTGAA+CGG | 0.572404 | 2_1:+18994450 | None:intergenic |
| ATTGAAAAGGGCTTTGGTGT+TGG | 0.572498 | 2_1:-18995487 | Msa0199720:CDS |
| AGGGAAAATTACACCAGTGA+AGG | 0.572755 | 2_1:-18995765 | Msa0199720:CDS |
| ACGGTTTAACAACATACCAC+AGG | 0.573435 | 2_1:-18996419 | Msa0199720:intron |
| TAGTGCTTGGAGAGCTTGGT+GGG | 0.574648 | 2_1:-18996258 | Msa0199720:CDS |
| ATACCTTCAACAAACTCGTA+AGG | 0.577397 | 2_1:+18994712 | None:intergenic |
| TAAAACATGGTCAGATAGAG+TGG | 0.578796 | 2_1:+18996441 | None:intergenic |
| CAAAGCAGCCATGGATGATG+CGG | 0.579483 | 2_1:+18997579 | None:intergenic |
| AATATGAACTTGATTTGGAG+AGG | 0.583633 | 2_1:+18999536 | None:intergenic |
| GTAGCGAGCAGCATCATCAA+TGG | 0.584206 | 2_1:+18994964 | None:intergenic |
| GTAGTGCTTGGAGAGCTTGG+TGG | 0.586706 | 2_1:-18996259 | Msa0199720:CDS |
| GGTGATATGGAGTCTGCTCA+AGG | 0.587199 | 2_1:-18996002 | Msa0199720:CDS |
| AGTTGCCGGAATAATTAACC+CGG | 0.590690 | 2_1:-18998180 | Msa0199720:CDS |
| TAGTGGAAGCCCTAAAACAA+GGG | 0.590891 | 2_1:-18996219 | Msa0199720:CDS |
| ATAAATGCCATTAGTTACAC+GGG | 0.592429 | 2_1:+18996614 | None:intergenic |
| TTGCAGTGTTAAGGTCCTCA+GGG | 0.593001 | 2_1:+18995723 | None:intergenic |
| AACTTACCCGATCAGACCAA+TGG | 0.594143 | 2_1:+18994273 | None:intergenic |
| TGGTTCTAAATCATGGCCAC+CGG | 0.595081 | 2_1:-18998421 | Msa0199720:exon |
| TACCTGATTTGATTTGAACT+CGG | 0.595211 | 2_1:+18999318 | None:intergenic |
| AGAGACACAAGGACCGTGAT+CGG | 0.595804 | 2_1:+18995200 | None:intergenic |
| GTACATCCTCCCATGGGTGG+CGG | 0.596992 | 2_1:+18994002 | None:intergenic |
| CTTAACACTGCAATCAAGAG+TGG | 0.600962 | 2_1:-18995713 | Msa0199720:CDS |
| ATCATGTTATGTGCCGATCA+CGG | 0.602097 | 2_1:-18995213 | Msa0199720:CDS |
| AAATTATATGAGTTGGAGCA+CGG | 0.602685 | 2_1:+18995684 | None:intergenic |
| AGTACGGGAGAATAATTGTC+CGG | 0.602802 | 2_1:+18998402 | None:intergenic |
| AGTACAACAGCAACACATGT+AGG | 0.606036 | 2_1:+18993696 | None:intergenic |
| TGTTGTTAAACCGTAAAACA+TGG | 0.610398 | 2_1:+18996428 | None:intergenic |
| AGGCTGCTTCAAAGCAGCCA+TGG | 0.611723 | 2_1:+18997570 | None:intergenic |
| TGTAGAGTACATCCTCCCAT+GGG | 0.614146 | 2_1:+18993996 | None:intergenic |
| ATAAATCAGGGAGCTAAAAG+TGG | 0.616382 | 2_1:-18996026 | Msa0199720:intron |
| TTTGAAATCCTTCTGAACCC+GGG | 0.618519 | 2_1:+18998162 | None:intergenic |
| TGCAAAATTGATGAAGACAT+CGG | 0.619064 | 2_1:+18997919 | None:intergenic |
| TTGATGAAGACATCGGCAGT+AGG | 0.621353 | 2_1:+18997926 | None:intergenic |
| ACAATCGGTCCACGATTTGG+GGG | 0.622921 | 2_1:-18994989 | Msa0199720:CDS |
| TGAAAAGAAAGAGAATGAGG+AGG | 0.623556 | 2_1:+18999388 | None:intergenic |
| AGGTCCTCAGGGATTTGTGG+AGG | 0.624313 | 2_1:+18995734 | None:intergenic |
| TGGTCAGATAGAGTGGAACC+GGG | 0.626895 | 2_1:+18996448 | None:intergenic |
| ACACATACGTAGCATGAACT+GGG | 0.626996 | 2_1:+18998108 | None:intergenic |
| CAATACTATTGTGACAGCGA+GGG | 0.631045 | 2_1:-18995169 | Msa0199720:CDS |
| ATACGTAGCATGAACTGGGA+TGG | 0.634525 | 2_1:+18998112 | None:intergenic |
| ATTGAGTACAGTAACGGGGT+AGG | 0.634839 | 2_1:+18995431 | None:intergenic |
| TGTACTCTACACAAAATGAG+AGG | 0.634975 | 2_1:-18993984 | Msa0199720:exon |
| ATGGGTACACCAGCATAGCA+TGG | 0.640473 | 2_1:+18995520 | None:intergenic |
| AGAGTACATCCTCCCATGGG+TGG | 0.641683 | 2_1:+18993999 | None:intergenic |
| ATTGGCCCAGCCACTGTCGG+AGG | 0.642488 | 2_1:-18997370 | Msa0199720:CDS |
| GTGATATGGAGTCTGCTCAA+GGG | 0.644773 | 2_1:-18996001 | Msa0199720:CDS |
| CTTCAAGGATGCTCATGACA+GGG | 0.646371 | 2_1:-18994942 | Msa0199720:intron |
| GAACTCGGTTGGTGAGACAG+AGG | 0.648943 | 2_1:+18999333 | None:intergenic |
| TCCACCATTTCTGATGACAG+AGG | 0.651297 | 2_1:-18995662 | Msa0199720:intron |
| TGCACAAGTTCCACTAACCC+AGG | 0.651311 | 2_1:+18996174 | None:intergenic |
| ACTATACCGCCACCCATGGG+AGG | 0.656736 | 2_1:-18994008 | Msa0199720:CDS |
| ATCATTCTAGCAAATATCGG+AGG | 0.662219 | 2_1:+18993900 | None:intergenic |
| GTTGCCGGAATAATTAACCC+GGG | 0.662569 | 2_1:-18998179 | Msa0199720:CDS |
| GAAGAAGAAGGGAATTCGTG+TGG | 0.666484 | 2_1:-18994689 | Msa0199720:CDS |
| TGCCCGGTCAAACAATAAGG+TGG | 0.666636 | 2_1:-18997479 | Msa0199720:intron |
| AGAGCAGATACACACCGCAA+AGG | 0.668786 | 2_1:+18998317 | None:intergenic |
| GTACTCTACACAAAATGAGA+GGG | 0.669236 | 2_1:-18993983 | Msa0199720:exon |
| ACAAGCAGCTTCCCATCCAG+CGG | 0.676917 | 2_1:-18998357 | Msa0199720:CDS |
| TTGTGAGCACCAGAGACACA+AGG | 0.687612 | 2_1:+18995189 | None:intergenic |
| AATCAGGGAGCTAAAAGTGG+CGG | 0.688527 | 2_1:-18996023 | Msa0199720:intron |
| ACAATACTATTGTGACAGCG+AGG | 0.692975 | 2_1:-18995170 | Msa0199720:CDS |
| ACGGGAGAATAATTGTCCGG+TGG | 0.694280 | 2_1:+18998405 | None:intergenic |
| ATATATATAAGGCTGAGTGG+TGG | 0.696905 | 2_1:+18999418 | None:intergenic |
| TACTCCTCCACAAATCCCTG+AGG | 0.730328 | 2_1:-18995738 | Msa0199720:CDS |
| GGTCAGATAGAGTGGAACCG+GGG | 0.749188 | 2_1:+18996449 | None:intergenic |
| TGAAACCTACACTCTCACCA+AGG | 0.752906 | 2_1:-18994440 | Msa0199720:CDS |
| ATAAATTGAGTACAGTAACG+GGG | 0.761826 | 2_1:+18995427 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTGAAAGATTTATATA+GGG | + | chr2_1:18995532-18995551 | None:intergenic | 10.0% |
| !! | TAAATTTGAAAGATTTATAT+AGG | + | chr2_1:18995533-18995552 | None:intergenic | 10.0% |
| !!! | AATAATCATTTTAGAAAATT+AGG | + | chr2_1:18996141-18996160 | None:intergenic | 10.0% |
| !! | TATGATATTATAGTTAATTA+AGG | + | chr2_1:18997350-18997369 | None:intergenic | 10.0% |
| !! | ATTAACTATAATATCATAAT+TGG | - | chr2_1:18997352-18997371 | Msa0199720:CDS | 10.0% |
| !!! | ATTTAATTTAAAAAGAAACT+TGG | - | chr2_1:18998330-18998349 | Msa0199720:intron | 10.0% |
| !!! | TTTAATTTAAAAAGAAACTT+GGG | - | chr2_1:18998331-18998350 | Msa0199720:intron | 10.0% |
| !! | AATTTATGATTTACATATTT+CGG | - | chr2_1:18998919-18998938 | Msa0199720:intron | 10.0% |
| !! | AATAAAATATGAACTTGATT+TGG | + | chr2_1:18993635-18993654 | None:intergenic | 15.0% |
| !!! | TTGATAACTTTTTTTGTTTA+AGG | - | chr2_1:18994416-18994435 | Msa0199720:CDS | 15.0% |
| !!! | TGATAACTTTTTTTGTTTAA+GGG | - | chr2_1:18994417-18994436 | Msa0199720:CDS | 15.0% |
| !! | ATCTTCAAAATCAAAATAAA+AGG | + | chr2_1:18994447-18994466 | None:intergenic | 15.0% |
| !!! | AAATAACTCATTTCATATTT+TGG | - | chr2_1:18995359-18995378 | Msa0199720:intron | 15.0% |
| !! | TAAATCTTTCAAATTTAACA+AGG | - | chr2_1:18995536-18995555 | Msa0199720:intron | 15.0% |
| !!! | AATGAAAAAACTTATTTTAG+TGG | - | chr2_1:18995750-18995769 | Msa0199720:CDS | 15.0% |
| !! | TTAAAATAAATTCAAAGATG+AGG | + | chr2_1:18996267-18996286 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTAAACTATCATT+TGG | + | chr2_1:18996416-18996435 | None:intergenic | 15.0% |
| !! | AAATTAAATTCTGTTCTATT+AGG | + | chr2_1:18998319-18998338 | None:intergenic | 15.0% |
| !! | TTAATTTAAAAAGAAACTTG+GGG | - | chr2_1:18998332-18998351 | Msa0199720:CDS | 15.0% |
| !!! | AAGAGAATTAAGTTTAAAAT+TGG | + | chr2_1:18999385-18999404 | None:intergenic | 15.0% |
| !!! | TCTAGAATGCAAAATATTAA+CGG | + | chr2_1:18993876-18993895 | None:intergenic | 20.0% |
| !! | TCATCAACAAAAAGAAAAAA+AGG | + | chr2_1:18994100-18994119 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTGTTGATGATA+TGG | - | chr2_1:18994102-18994121 | Msa0199720:intron | 20.0% |
| !! | GAAAATTATTCAAAGATGAA+AGG | + | chr2_1:18994186-18994205 | None:intergenic | 20.0% |
| !!! | GAAAATTCAAAGTCTTTTTT+TGG | - | chr2_1:18994320-18994339 | Msa0199720:CDS | 20.0% |
| !! | TTATCAAAAATGAGAATTTG+AGG | + | chr2_1:18994403-18994422 | None:intergenic | 20.0% |
| !!! | ACATTTTAAAATATGACCTT+TGG | - | chr2_1:18994641-18994660 | Msa0199720:intron | 20.0% |
| !!! | ATCTTTGCTTTTAATGTTAA+TGG | - | chr2_1:18994921-18994940 | Msa0199720:intron | 20.0% |
| !! | ATTGTACAATAAGATTTCAT+AGG | + | chr2_1:18995310-18995329 | None:intergenic | 20.0% |
| !! | AATCTTGAAAAATAGTTTCT+AGG | - | chr2_1:18996101-18996120 | Msa0199720:intron | 20.0% |
| !!! | AATTTGAGCTTTATTTCTTA+TGG | - | chr2_1:18996439-18996458 | Msa0199720:CDS | 20.0% |
| !!! | ATTATATCTTACTTTGCTAT+AGG | - | chr2_1:18996667-18996686 | Msa0199720:intron | 20.0% |
| !! | ATTTATTTACATTAAACCTC+AGG | - | chr2_1:18996870-18996889 | Msa0199720:intron | 20.0% |
| !!! | TGAGAAATTTGTTAAAAGAT+AGG | + | chr2_1:18997064-18997083 | None:intergenic | 20.0% |
| !! | TAAAGAAACATTTGACAAAT+TGG | - | chr2_1:18997253-18997272 | Msa0199720:intron | 20.0% |
| !! | TTAAAAGGTGAATTAAGATA+TGG | + | chr2_1:18997305-18997324 | None:intergenic | 20.0% |
| !! | AAAATTTATCTAAAGAAGCT+TGG | + | chr2_1:18997868-18997887 | None:intergenic | 20.0% |
| !!! | TTATCCATTTAGATATTTTG+TGG | - | chr2_1:18997898-18997917 | Msa0199720:intron | 20.0% |
| !!! | GCTCATAAATAATCATTTTA+CGG | + | chr2_1:18998135-18998154 | None:intergenic | 20.0% |
| !! | TAATTTAAAAAGAAACTTGG+GGG | - | chr2_1:18998333-18998352 | Msa0199720:CDS | 20.0% |
| !! | TATAAAAAGCTAAATCTCTA+AGG | - | chr2_1:18998575-18998594 | Msa0199720:intron | 20.0% |
| !!! | AATTTAGTTCTTAATGTAGA+TGG | - | chr2_1:18998751-18998770 | Msa0199720:intron | 20.0% |
| !! | AAAATCATTCTAGCAAATAT+CGG | + | chr2_1:18999269-18999288 | None:intergenic | 20.0% |
| ! | TATATATATATAAGGCTGAG+TGG | + | chr2_1:18993751-18993770 | None:intergenic | 25.0% |
| ! | GAGGTGTGTATATATATATA+AGG | + | chr2_1:18993759-18993778 | None:intergenic | 25.0% |
| ! | AAATGAAAAGAAAGAGAATG+AGG | + | chr2_1:18993781-18993800 | None:intergenic | 25.0% |
| ! | CTACAACTAGATTATTGAAT+TGG | + | chr2_1:18993921-18993940 | None:intergenic | 25.0% |
| ! | AGTATTGTTCAATTCTATCA+TGG | - | chr2_1:18993939-18993958 | Msa0199720:three_prime_UTR | 25.0% |
| ! | AGGTAGATTTCAATTCAATT+TGG | - | chr2_1:18993983-18994002 | Msa0199720:exon | 25.0% |
| ! | AGATTTCAATTCAATTTGGT+TGG | - | chr2_1:18993987-18994006 | Msa0199720:exon | 25.0% |
| ! | ATTTGTGGTTTCTACTAAAA+TGG | - | chr2_1:18994570-18994589 | Msa0199720:intron | 25.0% |
| !! | AGTTGTAATTTTGTATTCAC+AGG | - | chr2_1:18994945-18994964 | Msa0199720:CDS | 25.0% |
| !!! | GGATTTCAAAAACTCTTTTT+TGG | - | chr2_1:18995014-18995033 | Msa0199720:intron | 25.0% |
| ! | GTTGATTATTCGTTTCTATA+TGG | - | chr2_1:18995076-18995095 | Msa0199720:intron | 25.0% |
| !! | TCATCAATTTTGCATCATTT+AGG | - | chr2_1:18995253-18995272 | Msa0199720:intron | 25.0% |
| !! | GTCATTAGCTAAATAGATTT+TGG | - | chr2_1:18995399-18995418 | Msa0199720:intron | 25.0% |
| ! | TTCAGTATTAGAATATTGAG+AGG | - | chr2_1:18995424-18995443 | Msa0199720:CDS | 25.0% |
| !!! | AAAACTTATTTTAGTGGTCA+TGG | - | chr2_1:18995756-18995775 | Msa0199720:CDS | 25.0% |
| ! | TATTCACTTAACACATATCT+AGG | + | chr2_1:18996180-18996199 | None:intergenic | 25.0% |
| !! | AATATAATTGCTATTGCAAC+AGG | - | chr2_1:18996196-18996215 | Msa0199720:CDS | 25.0% |
| ! | ATGAAAGAAAAAATTACCTG+TGG | + | chr2_1:18996763-18996782 | None:intergenic | 25.0% |
| ! | AAACATCTGCATTTCAAAAA+AGG | - | chr2_1:18996799-18996818 | Msa0199720:intron | 25.0% |
| ! | TAATGTAAATAAATCCAGAC+AGG | + | chr2_1:18996864-18996883 | None:intergenic | 25.0% |
| ! | TTAATGCTTTCCTCATAAAA+AGG | - | chr2_1:18997085-18997104 | Msa0199720:intron | 25.0% |
| ! | TGAAAAGAGACTTCTTTAAA+AGG | + | chr2_1:18997320-18997339 | None:intergenic | 25.0% |
| !! | CTTATCTTTTCTTAGATTGA+AGG | - | chr2_1:18997375-18997394 | Msa0199720:CDS | 25.0% |
| !!! | TTTTCAATAATGGAAGACAT+GGG | + | chr2_1:18997664-18997683 | None:intergenic | 25.0% |
| ! | ATGTCTTCCATTATTGAAAA+GGG | - | chr2_1:18997664-18997683 | Msa0199720:intron | 25.0% |
| ! | AATAAATTGAGTACAGTAAC+GGG | + | chr2_1:18997740-18997759 | None:intergenic | 25.0% |
| ! | CAATAAATTGAGTACAGTAA+CGG | + | chr2_1:18997741-18997760 | None:intergenic | 25.0% |
| ! | TTACTGTACTCAATTTATTG+AGG | - | chr2_1:18997741-18997760 | Msa0199720:intron | 25.0% |
| ! | CAAATGGTGAAAAATATTTG+AGG | + | chr2_1:18997793-18997812 | None:intergenic | 25.0% |
| ! | ATACTTAAGTGACAAACATT+TGG | + | chr2_1:18997821-18997840 | None:intergenic | 25.0% |
| ! | AGTACCACAAAATATCTAAA+TGG | + | chr2_1:18997905-18997924 | None:intergenic | 25.0% |
| ! | GTGGTACTAATACATTATAT+TGG | - | chr2_1:18997917-18997936 | Msa0199720:CDS | 25.0% |
| ! | TCAGAAGTAAATAAACCAAA+CGG | + | chr2_1:18998064-18998083 | None:intergenic | 25.0% |
| ! | AGAACTAGAATAGAAATGTT+GGG | - | chr2_1:18998279-18998298 | Msa0199720:intron | 25.0% |
| ! | AAGAACTAAATTATTTGCCT+TGG | + | chr2_1:18998743-18998762 | None:intergenic | 25.0% |
| ! | ATTGATGAAATTGTTGAGAT+TGG | - | chr2_1:18998835-18998854 | Msa0199720:intron | 25.0% |
| !! | TTAGGACATTATTGAAGTTT+TGG | - | chr2_1:18998953-18998972 | Msa0199720:intron | 25.0% |
| ! | GAAGGAAAATATATTTGACT+CGG | - | chr2_1:18999067-18999086 | Msa0199720:intron | 25.0% |
| !! | TGTTCCTTGTTTAAAATTTC+AGG | - | chr2_1:18999100-18999119 | Msa0199720:intron | 25.0% |
| !!! | AAAATGAGAGGGTTTTTTTA+TGG | - | chr2_1:18999191-18999210 | Msa0199720:intron | 25.0% |
| !! | TGTTTCAAATTAGCATCTTT+TGG | - | chr2_1:18999231-18999250 | Msa0199720:intron | 25.0% |
| ! | ATCTTACAACACTAATTTAG+CGG | + | chr2_1:18999296-18999315 | None:intergenic | 25.0% |
| !! | TACCTGATTTGATTTGAACT+CGG | + | chr2_1:18993848-18993867 | None:intergenic | 30.0% |
| !!! | TCTTACGTGCATTTTTTGTT+AGG | - | chr2_1:18993963-18993982 | Msa0199720:three_prime_UTR | 30.0% |
| TTTCAATTCAATTTGGTTGG+TGG | - | chr2_1:18993990-18994009 | Msa0199720:CDS | 30.0% | |
| TCATAACTGTGTTAGTTAGT+TGG | - | chr2_1:18994038-18994057 | Msa0199720:CDS | 30.0% | |
| AGTTCATGATTCACAACAAT+AGG | + | chr2_1:18994487-18994506 | None:intergenic | 30.0% | |
| ! | GAACATTGATCAACTAGTTT+AGG | + | chr2_1:18994540-18994559 | None:intergenic | 30.0% |
| GATATTGAAAACTAATGCAG+TGG | - | chr2_1:18994701-18994720 | Msa0199720:CDS | 30.0% | |
| !! | ATAGATCTGGTTCTAAATCA+TGG | - | chr2_1:18994735-18994754 | Msa0199720:intron | 30.0% |
| !!! | CTTGATTTTGATTTCCTTTG+CGG | - | chr2_1:18994832-18994851 | Msa0199720:intron | 30.0% |
| !!! | TCAAAAACTCTTTTTTGGTC+AGG | - | chr2_1:18995019-18995038 | Msa0199720:intron | 30.0% |
| AAATGTCATTCACTACAAGT+TGG | + | chr2_1:18995140-18995159 | None:intergenic | 30.0% | |
| TGCAAAATTGATGAAGACAT+CGG | + | chr2_1:18995247-18995266 | None:intergenic | 30.0% | |
| ! | TCAATTTTGCATCATTTAGG+AGG | - | chr2_1:18995256-18995275 | Msa0199720:intron | 30.0% |
| ATAGCAACAACTCTAATTGT+AGG | + | chr2_1:18995616-18995635 | None:intergenic | 30.0% | |
| ! | TTGTTGCTATTATTGCTGAA+GGG | - | chr2_1:18995626-18995645 | Msa0199720:intron | 30.0% |
| !!! | TTATTTTAGTGGTCATGGTT+TGG | - | chr2_1:18995761-18995780 | Msa0199720:CDS | 30.0% |
| !!! | ATGGCTTTATTTTCTAGTTG+AGG | - | chr2_1:18995949-18995968 | Msa0199720:CDS | 30.0% |
| TAGTTATCTCTACAATGTCA+AGG | + | chr2_1:18996027-18996046 | None:intergenic | 30.0% | |
| CTGTTTATACTTGTCCTTAA+CGG | - | chr2_1:18996064-18996083 | Msa0199720:intron | 30.0% | |
| ! | GAAAGCTCTTTGATTCTTTT+GGG | + | chr2_1:18996318-18996337 | None:intergenic | 30.0% |
| TTTCCTTAAGATACTTTGCT+GGG | - | chr2_1:18996334-18996353 | Msa0199720:intron | 30.0% | |
| AATGGAGTTGTATAATTCGT+TGG | + | chr2_1:18996528-18996547 | None:intergenic | 30.0% | |
| ATAAATGCCATTAGTTACAC+GGG | + | chr2_1:18996552-18996571 | None:intergenic | 30.0% | |
| CATAAATGCCATTAGTTACA+CGG | + | chr2_1:18996553-18996572 | None:intergenic | 30.0% | |
| GTAACTAATGGCATTTATGA+AGG | - | chr2_1:18996554-18996573 | Msa0199720:intron | 30.0% | |
| !!! | GCATGCTGATTTAATCTTTT+CGG | - | chr2_1:18996581-18996600 | Msa0199720:intron | 30.0% |
| TGTTGTTAAACCGTAAAACA+TGG | + | chr2_1:18996738-18996757 | None:intergenic | 30.0% | |
| !! | ACTACTATCATTTTAACCTG+AGG | + | chr2_1:18996889-18996908 | None:intergenic | 30.0% |
| GTTAAAATGATAGTAGTGCT+TGG | - | chr2_1:18996892-18996911 | Msa0199720:intron | 30.0% | |
| ! | TTCAAATCGGAAGTACAATT+CGG | - | chr2_1:18997018-18997037 | Msa0199720:intron | 30.0% |
| TACTTGCACTTGTATAAATC+AGG | - | chr2_1:18997124-18997143 | Msa0199720:intron | 30.0% | |
| ACTTGCACTTGTATAAATCA+GGG | - | chr2_1:18997125-18997144 | Msa0199720:intron | 30.0% | |
| ! | ATCTTTTCTTAGATTGAAGG+AGG | - | chr2_1:18997378-18997397 | Msa0199720:CDS | 30.0% |
| ! | TCTTTTCTTAGATTGAAGGA+GGG | - | chr2_1:18997379-18997398 | Msa0199720:CDS | 30.0% |
| ! | AAATTATATGAGTTGGAGCA+CGG | + | chr2_1:18997482-18997501 | None:intergenic | 30.0% |
| ! | ATGGTGGAAATTATATGAGT+TGG | + | chr2_1:18997489-18997508 | None:intergenic | 30.0% |
| ACGTGTTGTAATTTAGAGAT+GGG | - | chr2_1:18997539-18997558 | Msa0199720:CDS | 30.0% | |
| ! | TTTCTCCCAATATTTTGCAA+AGG | - | chr2_1:18997613-18997632 | Msa0199720:intron | 30.0% |
| !! | CTTTTCAATAATGGAAGACA+TGG | + | chr2_1:18997665-18997684 | None:intergenic | 30.0% |
| CATGTCTTCCATTATTGAAA+AGG | - | chr2_1:18997663-18997682 | Msa0199720:intron | 30.0% | |
| ATAAATTGAGTACAGTAACG+GGG | + | chr2_1:18997739-18997758 | None:intergenic | 30.0% | |
| CAAACATTTGGCAAAACAAA+TGG | + | chr2_1:18997809-18997828 | None:intergenic | 30.0% | |
| !! | GGTTTATTTACTTCTGAAGT+AGG | - | chr2_1:18998067-18998086 | Msa0199720:intron | 30.0% |
| !! | CGTATTTAGCTCAAAAGTTT+TGG | + | chr2_1:18998112-18998131 | None:intergenic | 30.0% |
| TATTTATGAGCTTCTGTAAC+AGG | - | chr2_1:18998144-18998163 | Msa0199720:CDS | 30.0% | |
| !! | ATTTCTATTCTAGTTCTCCT+TGG | + | chr2_1:18998276-18998295 | None:intergenic | 30.0% |
| GAGAACTAGAATAGAAATGT+TGG | - | chr2_1:18998278-18998297 | Msa0199720:intron | 30.0% | |
| CTTCATCTTTCATCTAACAT+GGG | - | chr2_1:18998393-18998412 | Msa0199720:CDS | 30.0% | |
| TTCATCTTTCATCTAACATG+GGG | - | chr2_1:18998394-18998413 | Msa0199720:CDS | 30.0% | |
| ! | ATTATATTTTGCCTTGTCAC+AGG | - | chr2_1:18998420-18998439 | Msa0199720:exon | 30.0% |
| ! | TTATATTTTGCCTTGTCACA+GGG | - | chr2_1:18998421-18998440 | Msa0199720:exon | 30.0% |
| ! | TTTTCCTTCTGTGAAATACA+TGG | - | chr2_1:18998684-18998703 | Msa0199720:intron | 30.0% |
| TATTCCATGTATTTCACAGA+AGG | + | chr2_1:18998691-18998710 | None:intergenic | 30.0% | |
| AATTTCATCAATCTCTTGCT+TGG | + | chr2_1:18998827-18998846 | None:intergenic | 30.0% | |
| TTGAGATTGGATATCTGAAT+GGG | - | chr2_1:18998848-18998867 | Msa0199720:intron | 30.0% | |
| TCATTGATATTGCGTATAGA+AGG | - | chr2_1:18999049-18999068 | Msa0199720:intron | 30.0% | |
| ! | TGTGCCTGAAATTTTAAACA+AGG | + | chr2_1:18999107-18999126 | None:intergenic | 30.0% |
| TTGGTTAGATTAGATGGATG+GGG | + | chr2_1:18993671-18993690 | None:intergenic | 35.0% | |
| GTTGGTTAGATTAGATGGAT+GGG | + | chr2_1:18993672-18993691 | None:intergenic | 35.0% | |
| ! | TGTTGGTTAGATTAGATGGA+TGG | + | chr2_1:18993673-18993692 | None:intergenic | 35.0% |
| !! | TTGGTGTTGGTTAGATTAGA+TGG | + | chr2_1:18993677-18993696 | None:intergenic | 35.0% |
| ATATATATAAGGCTGAGTGG+TGG | + | chr2_1:18993748-18993767 | None:intergenic | 35.0% | |
| TGAAAAGAAAGAGAATGAGG+AGG | + | chr2_1:18993778-18993797 | None:intergenic | 35.0% | |
| !! | TGATTTGATTTGAACTCGGT+TGG | + | chr2_1:18993844-18993863 | None:intergenic | 35.0% |
| AACCGAGTTCAAATCAAATC+AGG | - | chr2_1:18993843-18993862 | Msa0199720:three_prime_UTR | 35.0% | |
| !! | ATTCAATTTGGTTGGTGGTT+TGG | - | chr2_1:18993995-18994014 | Msa0199720:CDS | 35.0% |
| !! | TGTGCTGATTTGTTAGTGAA+AGG | - | chr2_1:18994150-18994169 | Msa0199720:intron | 35.0% |
| TGATTGAACGACTATGAATG+CGG | + | chr2_1:18994259-18994278 | None:intergenic | 35.0% | |
| TGTTCTCTACATGTGATTTG+TGG | - | chr2_1:18994555-18994574 | Msa0199720:intron | 35.0% | |
| TTAATTATTCCGGCAACTGA+TGG | + | chr2_1:18994981-18995000 | None:intergenic | 35.0% | |
| !!! | TTTTGAAATCCTTCTGAACC+CGG | + | chr2_1:18995005-18995024 | None:intergenic | 35.0% |
| !!! | AAAACTCTTTTTTGGTCAGG+AGG | - | chr2_1:18995022-18995041 | Msa0199720:intron | 35.0% |
| !! | TTCACTACAAGTTGGTTACT+TGG | + | chr2_1:18995132-18995151 | None:intergenic | 35.0% |
| ATCCAAGTGTAATGTGTTCT+TGG | - | chr2_1:18995166-18995185 | Msa0199720:CDS | 35.0% | |
| ! | GTTGTTGCTATTATTGCTGA+AGG | - | chr2_1:18995625-18995644 | Msa0199720:intron | 35.0% |
| ! | TGTTGCTATTATTGCTGAAG+GGG | - | chr2_1:18995627-18995646 | Msa0199720:intron | 35.0% |
| CAATAAGGTGGTGATTCAAA+TGG | - | chr2_1:18995696-18995715 | Msa0199720:CDS | 35.0% | |
| !!! | CAAGCTGGTGCTTTTAAAAT+CGG | - | chr2_1:18995820-18995839 | Msa0199720:intron | 35.0% |
| TCATTTCCTGCTTATGTTGA+TGG | - | chr2_1:18995930-18995949 | Msa0199720:CDS | 35.0% | |
| ATAAAGCCATCAACATAAGC+AGG | + | chr2_1:18995939-18995958 | None:intergenic | 35.0% | |
| CGTTAAGGACAAGTATAAAC+AGG | + | chr2_1:18996066-18996085 | None:intergenic | 35.0% | |
| TTAGATGAACTAAGCCGTTA+AGG | + | chr2_1:18996081-18996100 | None:intergenic | 35.0% | |
| ! | GGAAAGCTCTTTGATTCTTT+TGG | + | chr2_1:18996319-18996338 | None:intergenic | 35.0% |
| CTTTCCTTAAGATACTTTGC+TGG | - | chr2_1:18996333-18996352 | Msa0199720:intron | 35.0% | |
| TTCCTTAAGATACTTTGCTG+GGG | - | chr2_1:18996335-18996354 | Msa0199720:intron | 35.0% | |
| TATGGTGCATAATGTATGCA+TGG | - | chr2_1:18996457-18996476 | Msa0199720:CDS | 35.0% | |
| ! | AGACTACCTTTTGAATTGCA+GGG | - | chr2_1:18996494-18996513 | Msa0199720:intron | 35.0% |
| ! | TTTGCTATAGGCATTGCAAT+TGG | - | chr2_1:18996679-18996698 | Msa0199720:intron | 35.0% |
| TAAAACATGGTCAGATAGAG+TGG | + | chr2_1:18996725-18996744 | None:intergenic | 35.0% | |
| ! | CTCTATCTGACCATGTTTTA+CGG | - | chr2_1:18996725-18996744 | Msa0199720:intron | 35.0% |
| GCGTGATGAATATTCTTTAG+TGG | - | chr2_1:18996927-18996946 | Msa0199720:intron | 35.0% | |
| TTGTGCAACACTCTTCAAAT+CGG | - | chr2_1:18997005-18997024 | Msa0199720:intron | 35.0% | |
| ATAAATCAGGGAGCTAAAAG+TGG | - | chr2_1:18997137-18997156 | Msa0199720:intron | 35.0% | |
| TCAAAAGCTTCATACGAAGT+AGG | + | chr2_1:18997224-18997243 | None:intergenic | 35.0% | |
| CACGTGTTGTAATTTAGAGA+TGG | - | chr2_1:18997538-18997557 | Msa0199720:CDS | 35.0% | |
| CTATCAAATTTGAGTGTCTC+AGG | + | chr2_1:18997581-18997600 | None:intergenic | 35.0% | |
| CCTCACCTTTGCAAAATATT+GGG | + | chr2_1:18997621-18997640 | None:intergenic | 35.0% | |
| TCCTCACCTTTGCAAAATAT+TGG | + | chr2_1:18997622-18997641 | None:intergenic | 35.0% | |
| TCCATTATTGAAAAGGGCTT+TGG | - | chr2_1:18997670-18997689 | Msa0199720:intron | 35.0% | |
| ! | ACCAAAGCCCTTTTCAATAA+TGG | + | chr2_1:18997674-18997693 | None:intergenic | 35.0% |
| ! | GTGATGTTATCTCTCTTTTG+TGG | - | chr2_1:18997698-18997717 | Msa0199720:intron | 35.0% |
| ! | GTAACAGGTTTGCTTACAAT+CGG | - | chr2_1:18998159-18998178 | Msa0199720:CDS | 35.0% |
| ATACATTTCATGTGAAGCCA+AGG | - | chr2_1:18998256-18998275 | Msa0199720:intron | 35.0% | |
| AGAATAGAAATGTTGGGTCT+TGG | - | chr2_1:18998285-18998304 | Msa0199720:intron | 35.0% | |
| GAATAGAAATGTTGGGTCTT+GGG | - | chr2_1:18998286-18998305 | Msa0199720:intron | 35.0% | |
| TGAAGCATATGTGTGTTTGT+GGG | + | chr2_1:18998378-18998397 | None:intergenic | 35.0% | |
| ATGAAGCATATGTGTGTTTG+TGG | + | chr2_1:18998379-18998398 | None:intergenic | 35.0% | |
| GCTTCATCTTTCATCTAACA+TGG | - | chr2_1:18998392-18998411 | Msa0199720:CDS | 35.0% | |
| ! | TATATTTTGCCTTGTCACAG+GGG | - | chr2_1:18998422-18998441 | Msa0199720:exon | 35.0% |
| ATACCTTCAACAAACTCGTA+AGG | + | chr2_1:18998454-18998473 | None:intergenic | 35.0% | |
| ! | TGTTGAAGGTATGAAGAAGA+AGG | - | chr2_1:18998462-18998481 | Msa0199720:intron | 35.0% |
| ! | GTTGAAGGTATGAAGAAGAA+GGG | - | chr2_1:18998463-18998482 | Msa0199720:intron | 35.0% |
| !! | AAAGCTAAATCTCTAAGGCT+TGG | - | chr2_1:18998580-18998599 | Msa0199720:intron | 35.0% |
| !!! | TTGGTTTTGCTTTGTGAATC+AGG | - | chr2_1:18998599-18998618 | Msa0199720:intron | 35.0% |
| AGTGTAGGTTTCAACTTGAA+CGG | + | chr2_1:18998716-18998735 | None:intergenic | 35.0% | |
| CTTAATGTAGATGGTGCAAT+TGG | - | chr2_1:18998760-18998779 | Msa0199720:intron | 35.0% | |
| GTTGAGATTGGATATCTGAA+TGG | - | chr2_1:18998847-18998866 | Msa0199720:intron | 35.0% | |
| ! | CACGAGAGTTGTTGATAAAA+AGG | + | chr2_1:18998989-18999008 | None:intergenic | 35.0% |
| ACGCAATATCAATGACTACT+AGG | + | chr2_1:18999044-18999063 | None:intergenic | 35.0% | |
| TGTACTCTACACAAAATGAG+AGG | - | chr2_1:18999179-18999198 | Msa0199720:intron | 35.0% | |
| GTACTCTACACAAAATGAGA+GGG | - | chr2_1:18999180-18999199 | Msa0199720:intron | 35.0% | |
| ATCATTCTAGCAAATATCGG+AGG | + | chr2_1:18999266-18999285 | None:intergenic | 35.0% | |
| ! | TGAACCATAGAAGCTTTTCA+TGG | + | chr2_1:18999503-18999522 | None:intergenic | 35.0% |
| TTAGTTGGAGCAAGTAGTTG+TGG | - | chr2_1:18994053-18994072 | Msa0199720:intron | 40.0% | |
| TAATGATGCTGTCAACTGTG+AGG | - | chr2_1:18994214-18994233 | Msa0199720:intron | 40.0% | |
| GATTGAACGACTATGAATGC+GGG | + | chr2_1:18994258-18994277 | None:intergenic | 40.0% | |
| TAGATTTGTGACGCTTCCAA+AGG | + | chr2_1:18994660-18994679 | None:intergenic | 40.0% | |
| GGTTTGTCAACAGATAGATC+TGG | - | chr2_1:18994722-18994741 | Msa0199720:CDS | 40.0% | |
| AGTACGGGAGAATAATTGTC+CGG | + | chr2_1:18994764-18994783 | None:intergenic | 40.0% | |
| AAAACAGAGCTTGCGTAGTA+CGG | + | chr2_1:18994780-18994799 | None:intergenic | 40.0% | |
| AATCAAAATCAAGCATCCGC+TGG | + | chr2_1:18994825-18994844 | None:intergenic | 40.0% | |
| AGTTGCCGGAATAATTAACC+CGG | - | chr2_1:18994983-18995002 | Msa0199720:CDS | 40.0% | |
| TGAACCCGGGTTAATTATTC+CGG | + | chr2_1:18994991-18995010 | None:intergenic | 40.0% | |
| ATAATTAACCCGGGTTCAGA+AGG | - | chr2_1:18994993-18995012 | Msa0199720:CDS | 40.0% | |
| ! | TTTGAAATCCTTCTGAACCC+GGG | + | chr2_1:18995004-18995023 | None:intergenic | 40.0% |
| ACACATACGTAGCATGAACT+GGG | + | chr2_1:18995058-18995077 | None:intergenic | 40.0% | |
| AACACATACGTAGCATGAAC+TGG | + | chr2_1:18995059-18995078 | None:intergenic | 40.0% | |
| ! | AGTTGGTTACTTGGTAGTCA+TGG | + | chr2_1:18995123-18995142 | None:intergenic | 40.0% |
| AGCCAAGAACACATTACACT+TGG | + | chr2_1:18995171-18995190 | None:intergenic | 40.0% | |
| GCACTGCATATAGATCAACT+TGG | + | chr2_1:18995562-18995581 | None:intergenic | 40.0% | |
| GGCATATGCAATCAATTGCT+TGG | + | chr2_1:18995668-18995687 | None:intergenic | 40.0% | |
| AGCAATTGATTGCATATGCC+CGG | - | chr2_1:18995668-18995687 | Msa0199720:CDS | 40.0% | |
| ATATGCCCGGTCAAACAATA+AGG | - | chr2_1:18995681-18995700 | Msa0199720:CDS | 40.0% | |
| TCACCACCTTATTGTTTGAC+CGG | + | chr2_1:18995690-18995709 | None:intergenic | 40.0% | |
| ! | ATGGTTTGGCAGGTTGTTAT+TGG | - | chr2_1:18995775-18995794 | Msa0199720:CDS | 40.0% |
| ! | TTTAAAATCGGTGACACAGC+TGG | - | chr2_1:18995832-18995851 | Msa0199720:intron | 40.0% |
| TGCAACAGGACAGATTGAAA+TGG | - | chr2_1:18996210-18996229 | Msa0199720:CDS | 40.0% | |
| !! | GCTCTTTGATTCTTTTGGGA+AGG | + | chr2_1:18996314-18996333 | None:intergenic | 40.0% |
| GTGCATAATGTATGCATGGA+TGG | - | chr2_1:18996461-18996480 | Msa0199720:CDS | 40.0% | |
| ! | GAGACTACCTTTTGAATTGC+AGG | - | chr2_1:18996493-18996512 | Msa0199720:intron | 40.0% |
| ! | TACCTTTTGAATTGCAGGGT+GGG | - | chr2_1:18996498-18996517 | Msa0199720:intron | 40.0% |
| ACGGTTTAACAACATACCAC+AGG | - | chr2_1:18996744-18996763 | Msa0199720:intron | 40.0% | |
| TTCTTTGTCAATGACCTGTC+TGG | - | chr2_1:18996847-18996866 | Msa0199720:intron | 40.0% | |
| TTAGTGGAAGCCCTAAAACA+AGG | - | chr2_1:18996943-18996962 | Msa0199720:intron | 40.0% | |
| TAGTGGAAGCCCTAAAACAA+GGG | - | chr2_1:18996944-18996963 | Msa0199720:intron | 40.0% | |
| !!! | GGTCACTTTCCCTTGTTTTA+GGG | + | chr2_1:18996956-18996975 | None:intergenic | 40.0% |
| !!! | TGGTCACTTTCCCTTGTTTT+AGG | + | chr2_1:18996957-18996976 | None:intergenic | 40.0% |
| ! | AGAGTGTGGTCCTTTTTATG+AGG | + | chr2_1:18997098-18997117 | None:intergenic | 40.0% |
| TGCAAGTAGCATTAAGAGTG+TGG | + | chr2_1:18997112-18997131 | None:intergenic | 40.0% | |
| AATCAAGCACTAAGAGAAGC+TGG | - | chr2_1:18997188-18997207 | Msa0199720:intron | 40.0% | |
| AGGGAAAATTACACCAGTGA+AGG | - | chr2_1:18997398-18997417 | Msa0199720:intron | 40.0% | |
| CACTCTTGATTGCAGTGTTA+AGG | + | chr2_1:18997452-18997471 | None:intergenic | 40.0% | |
| CTTAACACTGCAATCAAGAG+TGG | - | chr2_1:18997450-18997469 | Msa0199720:intron | 40.0% | |
| ! | CCCAATATTTTGCAAAGGTG+AGG | - | chr2_1:18997618-18997637 | Msa0199720:intron | 40.0% |
| ! | ATTGAAAAGGGCTTTGGTGT+TGG | - | chr2_1:18997676-18997695 | Msa0199720:intron | 40.0% |
| ! | ATCATGTTATGTGCCGATCA+CGG | - | chr2_1:18997950-18997969 | Msa0199720:CDS | 40.0% |
| ACAATACTATTGTGACAGCG+AGG | - | chr2_1:18997993-18998012 | Msa0199720:intron | 40.0% | |
| CAATACTATTGTGACAGCGA+GGG | - | chr2_1:18997994-18998013 | Msa0199720:intron | 40.0% | |
| GTATTTACCTGATACGAGAC+TGG | + | chr2_1:18998038-18998057 | None:intergenic | 40.0% | |
| TCAGGTAAATACATGCCGTT+TGG | - | chr2_1:18998046-18998065 | Msa0199720:intron | 40.0% | |
| TTACAATCGGTCCACGATTT+GGG | - | chr2_1:18998172-18998191 | Msa0199720:CDS | 40.0% | |
| ATATGTGTGTTTGTGGGGAA+GGG | + | chr2_1:18998372-18998391 | None:intergenic | 40.0% | |
| GAAGCATATGTGTGTTTGTG+GGG | + | chr2_1:18998377-18998396 | None:intergenic | 40.0% | |
| !! | ACACCTTACGAGTTTGTTGA+AGG | - | chr2_1:18998448-18998467 | Msa0199720:intron | 40.0% |
| CTGTTCTTAGATCTTCTTGC+TGG | - | chr2_1:18998787-18998806 | Msa0199720:intron | 40.0% | |
| TTAGATCTTCTTGCTGGTAG+TGG | - | chr2_1:18998793-18998812 | Msa0199720:intron | 40.0% | |
| TTTGTTCTTGCACGATCCAT+TGG | - | chr2_1:18998874-18998893 | Msa0199720:intron | 40.0% | |
| !! | ATTTCGGTTGAAGAGCACTT+AGG | - | chr2_1:18998935-18998954 | Msa0199720:intron | 40.0% |
| CTTCAATCTCTTCTGGTCAA+AGG | + | chr2_1:18999130-18999149 | None:intergenic | 40.0% | |
| !!! | TGAGAGGGTTTTTTTATGGC+TGG | - | chr2_1:18999195-18999214 | Msa0199720:intron | 40.0% |
| AGTACAACAGCAACACATGT+AGG | + | chr2_1:18999470-18999489 | None:intergenic | 40.0% | |
| TCCACCATGAAAAGCTTCTA+TGG | - | chr2_1:18999496-18999515 | Msa0199720:five_prime_UTR | 40.0% | |
| ! | ACCATAGAAGCTTTTCATGG+TGG | + | chr2_1:18999500-18999519 | None:intergenic | 40.0% |
| !! | GGTGGTTTGGTGCAATTGTA+AGG | - | chr2_1:18994008-18994027 | Msa0199720:CDS | 45.0% |
| AAGATCAGACTGCGTGAATG+CGG | - | chr2_1:18994354-18994373 | Msa0199720:CDS | 45.0% | |
| TGCGGGAAAATCCCAATTGT+CGG | - | chr2_1:18994372-18994391 | Msa0199720:CDS | 45.0% | |
| TTGAGGTTCTCCCGACAATT+GGG | + | chr2_1:18994386-18994405 | None:intergenic | 45.0% | |
| ! | TTTGAGGTTCTCCCGACAAT+TGG | + | chr2_1:18994387-18994406 | None:intergenic | 45.0% |
| !! | TGGTTCTAAATCATGGCCAC+CGG | - | chr2_1:18994742-18994761 | Msa0199720:intron | 45.0% |
| AAACAGAGCTTGCGTAGTAC+GGG | + | chr2_1:18994779-18994798 | None:intergenic | 45.0% | |
| AAATCAAGCATCCGCTGGAT+GGG | + | chr2_1:18994820-18994839 | None:intergenic | 45.0% | |
| AAAATCAAGCATCCGCTGGA+TGG | + | chr2_1:18994821-18994840 | None:intergenic | 45.0% | |
| AGAGAAACACCATCAGTTGC+CGG | - | chr2_1:18994969-18994988 | Msa0199720:CDS | 45.0% | |
| GTTGCCGGAATAATTAACCC+GGG | - | chr2_1:18994984-18995003 | Msa0199720:CDS | 45.0% | |
| ATACGTAGCATGAACTGGGA+TGG | + | chr2_1:18995054-18995073 | None:intergenic | 45.0% | |
| TTGATGAAGACATCGGCAGT+AGG | + | chr2_1:18995240-18995259 | None:intergenic | 45.0% | |
| !! | AATTGCTTGGTGTCTGACTC+GGG | + | chr2_1:18995655-18995674 | None:intergenic | 45.0% |
| !! | CAATTGCTTGGTGTCTGACT+CGG | + | chr2_1:18995656-18995675 | None:intergenic | 45.0% |
| CACCACCTTATTGTTTGACC+GGG | + | chr2_1:18995689-18995708 | None:intergenic | 45.0% | |
| ! | TTTAGTGGTCATGGTTTGGC+AGG | - | chr2_1:18995765-18995784 | Msa0199720:CDS | 45.0% |
| TAATCCAGTCCAAGCTCTAC+AGG | - | chr2_1:18995869-18995888 | Msa0199720:intron | 45.0% | |
| GAAACGAATCCAACAGATCC+AGG | + | chr2_1:18995895-18995914 | None:intergenic | 45.0% | |
| AAATTCATGCTGCAGCTACG+TGG | + | chr2_1:18995994-18996013 | None:intergenic | 45.0% | |
| ! | GTCCCCAGCAAAGTATCTTA+AGG | + | chr2_1:18996340-18996359 | None:intergenic | 45.0% |
| !! | TATGCATGGATGGTTCTGAG+AGG | - | chr2_1:18996471-18996490 | Msa0199720:CDS | 45.0% |
| ! | CTACCTTTTGAATTGCAGGG+TGG | - | chr2_1:18996497-18996516 | Msa0199720:intron | 45.0% |
| ATCCCACCCTGCAATTCAAA+AGG | + | chr2_1:18996503-18996522 | None:intergenic | 45.0% | |
| TCCATTGCCCGTGTAACTAA+TGG | - | chr2_1:18996542-18996561 | Msa0199720:intron | 45.0% | |
| ! | GCTATAGGCATTGCAATTGG+AGG | - | chr2_1:18996682-18996701 | Msa0199720:intron | 45.0% |
| ! | ATTGGAGGAGATGTTTTCCC+CGG | - | chr2_1:18996697-18996716 | Msa0199720:intron | 45.0% |
| ATGGTCAGATAGAGTGGAAC+CGG | + | chr2_1:18996719-18996738 | None:intergenic | 45.0% | |
| ATAGTAGTGCTTGGAGAGCT+TGG | - | chr2_1:18996901-18996920 | Msa0199720:intron | 45.0% | |
| AATCAGGGAGCTAAAAGTGG+CGG | - | chr2_1:18997140-18997159 | Msa0199720:intron | 45.0% | |
| AGCTAAAAGTGGCGGTGATA+TGG | - | chr2_1:18997148-18997167 | Msa0199720:intron | 45.0% | |
| GTGATATGGAGTCTGCTCAA+GGG | - | chr2_1:18997162-18997181 | Msa0199720:intron | 45.0% | |
| GGAGGAGTAAATTCCTTCAC+TGG | + | chr2_1:18997414-18997433 | None:intergenic | 45.0% | |
| TTAAGGTCCTCAGGGATTTG+TGG | + | chr2_1:18997435-18997454 | None:intergenic | 45.0% | |
| TTGCAGTGTTAAGGTCCTCA+GGG | + | chr2_1:18997443-18997462 | None:intergenic | 45.0% | |
| ATTGCAGTGTTAAGGTCCTC+AGG | + | chr2_1:18997444-18997463 | None:intergenic | 45.0% | |
| TCCACCATTTCTGATGACAG+AGG | - | chr2_1:18997501-18997520 | Msa0199720:CDS | 45.0% | |
| ACCTCTGTCATCAGAAATGG+TGG | + | chr2_1:18997505-18997524 | None:intergenic | 45.0% | |
| CTCACCTCTGTCATCAGAAA+TGG | + | chr2_1:18997508-18997527 | None:intergenic | 45.0% | |
| ! | ATTGAGTACAGTAACGGGGT+AGG | + | chr2_1:18997735-18997754 | None:intergenic | 45.0% |
| CTGATACGAGACTGGAAACT+AGG | + | chr2_1:18998030-18998049 | None:intergenic | 45.0% | |
| CTAGTTTCCAGTCTCGTATC+AGG | - | chr2_1:18998028-18998047 | Msa0199720:intron | 45.0% | |
| CTTACAATCGGTCCACGATT+TGG | - | chr2_1:18998171-18998190 | Msa0199720:CDS | 45.0% | |
| TACAATCGGTCCACGATTTG+GGG | - | chr2_1:18998173-18998192 | Msa0199720:CDS | 45.0% | |
| ACTTCAAGGATGCTCATGAC+AGG | - | chr2_1:18998220-18998239 | Msa0199720:intron | 45.0% | |
| CTTCAAGGATGCTCATGACA+GGG | - | chr2_1:18998221-18998240 | Msa0199720:intron | 45.0% | |
| TATGTGTGTTTGTGGGGAAG+GGG | + | chr2_1:18998371-18998390 | None:intergenic | 45.0% | |
| CATATGTGTGTTTGTGGGGA+AGG | + | chr2_1:18998373-18998392 | None:intergenic | 45.0% | |
| GAAGAAGAAGGGAATTCGTG+TGG | - | chr2_1:18998474-18998493 | Msa0199720:intron | 45.0% | |
| GAATTCGTGTGGCAGGAATA+GGG | - | chr2_1:18998485-18998504 | Msa0199720:intron | 45.0% | |
| TGAAACCTACACTCTCACCA+AGG | - | chr2_1:18998723-18998742 | Msa0199720:intron | 45.0% | |
| ! | ATTTGCCTTGGTGAGAGTGT+AGG | + | chr2_1:18998731-18998750 | None:intergenic | 45.0% |
| AACTTACCCGATCAGACCAA+TGG | + | chr2_1:18998893-18998912 | None:intergenic | 45.0% | |
| ACTTCTTAGTGGGAGCTCTT+TGG | + | chr2_1:18999013-18999032 | None:intergenic | 45.0% | |
| AGAGCTCCCACTAAGAAGTT+AGG | - | chr2_1:18999014-18999033 | Msa0199720:intron | 45.0% | |
| GGACCACCTAACTTCTTAGT+GGG | + | chr2_1:18999023-18999042 | None:intergenic | 45.0% | |
| AGGACCACCTAACTTCTTAG+TGG | + | chr2_1:18999024-18999043 | None:intergenic | 45.0% | |
| TGTAGAGTACATCCTCCCAT+GGG | + | chr2_1:18999170-18999189 | None:intergenic | 45.0% | |
| TTCTGATCTCTGTTCTGTCG+TGG | - | chr2_1:18999413-18999432 | Msa0199720:five_prime_UTR | 45.0% | |
| ! | CTCTCTCGTGTTGTTGGTGT+TGG | + | chr2_1:18993690-18993709 | None:intergenic | 50.0% |
| CTCTCTCTCTCTCGTGTTGT+TGG | + | chr2_1:18993696-18993715 | None:intergenic | 50.0% | |
| ACGAGAGAGAGAGAGAGAGA+AGG | - | chr2_1:18993701-18993720 | Msa0199720:three_prime_UTR | 50.0% | |
| GACAGAGGAGAAGAGTGAGT+GGG | + | chr2_1:18993818-18993837 | None:intergenic | 50.0% | |
| AGACAGAGGAGAAGAGTGAG+TGG | + | chr2_1:18993819-18993838 | None:intergenic | 50.0% | |
| AGATCAGACTGCGTGAATGC+GGG | - | chr2_1:18994355-18994374 | Msa0199720:CDS | 50.0% | |
| GCGGGAAAATCCCAATTGTC+GGG | - | chr2_1:18994373-18994392 | Msa0199720:CDS | 50.0% | |
| ACGGGAGAATAATTGTCCGG+TGG | + | chr2_1:18994761-18994780 | None:intergenic | 50.0% | |
| AGAGCAGATACACACCGCAA+AGG | + | chr2_1:18994849-18994868 | None:intergenic | 50.0% | |
| CAAAGCAGCCATGGATGATG+CGG | + | chr2_1:18995587-18995606 | None:intergenic | 50.0% | |
| TGCCCGGTCAAACAATAAGG+TGG | - | chr2_1:18995684-18995703 | Msa0199720:CDS | 50.0% | |
| GCCATTAGTTACACGGGCAA+TGG | + | chr2_1:18996546-18996565 | None:intergenic | 50.0% | |
| TGGTCAGATAGAGTGGAACC+GGG | + | chr2_1:18996718-18996737 | None:intergenic | 50.0% | |
| TAGTGCTTGGAGAGCTTGGT+GGG | - | chr2_1:18996905-18996924 | Msa0199720:intron | 50.0% | |
| TGACCAAACCTGTTGTTGCC+TGG | - | chr2_1:18996971-18996990 | Msa0199720:intron | 50.0% | |
| GACCAAACCTGTTGTTGCCT+GGG | - | chr2_1:18996972-18996991 | Msa0199720:intron | 50.0% | |
| AACCCAGGCAACAACAGGTT+TGG | + | chr2_1:18996977-18996996 | None:intergenic | 50.0% | |
| TGCACAAGTTCCACTAACCC+AGG | + | chr2_1:18996992-18997011 | None:intergenic | 50.0% | |
| GGTGATATGGAGTCTGCTCA+AGG | - | chr2_1:18997161-18997180 | Msa0199720:intron | 50.0% | |
| TACTCCTCCACAAATCCCTG+AGG | - | chr2_1:18997425-18997444 | Msa0199720:intron | 50.0% | |
| ATGGGTACACCAGCATAGCA+TGG | + | chr2_1:18997646-18997665 | None:intergenic | 50.0% | |
| AGAGACACAAGGACCGTGAT+CGG | + | chr2_1:18997966-18997985 | None:intergenic | 50.0% | |
| TTGTGAGCACCAGAGACACA+AGG | + | chr2_1:18997977-18997996 | None:intergenic | 50.0% | |
| ! | ACAATCGGTCCACGATTTGG+GGG | - | chr2_1:18998174-18998193 | Msa0199720:CDS | 50.0% |
| GTAGCGAGCAGCATCATCAA+TGG | + | chr2_1:18998202-18998221 | None:intergenic | 50.0% | |
| TGATGCTGCTCGCTACTTCA+AGG | - | chr2_1:18998206-18998225 | Msa0199720:intron | 50.0% | |
| AAGAAGGGAATTCGTGTGGC+AGG | - | chr2_1:18998478-18998497 | Msa0199720:intron | 50.0% | |
| GGAATTCGTGTGGCAGGAAT+AGG | - | chr2_1:18998484-18998503 | Msa0199720:intron | 50.0% | |
| ! | GCACGATCCATTGGTCTGAT+CGG | - | chr2_1:18998883-18998902 | Msa0199720:intron | 50.0% |
| ! | CACGATCCATTGGTCTGATC+GGG | - | chr2_1:18998884-18998903 | Msa0199720:intron | 50.0% |
| GCTCCCACTAAGAAGTTAGG+TGG | - | chr2_1:18999017-18999036 | Msa0199720:intron | 50.0% | |
| GTGGCTGCTTCAATCTCTTC+TGG | + | chr2_1:18999137-18999156 | None:intergenic | 50.0% | |
| GTGTAGAGTACATCCTCCCA+TGG | + | chr2_1:18999171-18999190 | None:intergenic | 50.0% | |
| !! | GAACTCGGTTGGTGAGACAG+AGG | + | chr2_1:18993833-18993852 | None:intergenic | 55.0% |
| CAACTGTGAGGACCTCGAGT+CGG | - | chr2_1:18994226-18994245 | Msa0199720:intron | 55.0% | |
| AACTGTGAGGACCTCGAGTC+GGG | - | chr2_1:18994227-18994246 | Msa0199720:intron | 55.0% | |
| ACAAGCAGCTTCCCATCCAG+CGG | - | chr2_1:18994806-18994825 | Msa0199720:intron | 55.0% | |
| AGGCTGCTTCAAAGCAGCCA+TGG | + | chr2_1:18995596-18995615 | None:intergenic | 55.0% | |
| GTTATTGGCCCAGCCACTGT+CGG | - | chr2_1:18995790-18995809 | Msa0199720:intron | 55.0% | |
| AGCTTGAATGCCTCCGACAG+TGG | + | chr2_1:18995806-18995825 | None:intergenic | 55.0% | |
| !! | ACTGTCGGAGGCATTCAAGC+TGG | - | chr2_1:18995805-18995824 | Msa0199720:intron | 55.0% |
| AGATCCAGGCCTGTAGAGCT+TGG | + | chr2_1:18995881-18995900 | None:intergenic | 55.0% | |
| CTCTACAGGCCTGGATCTGT+TGG | - | chr2_1:18995883-18995902 | Msa0199720:intron | 55.0% | |
| GGTCAGATAGAGTGGAACCG+GGG | + | chr2_1:18996717-18996736 | None:intergenic | 55.0% | |
| GTAGTGCTTGGAGAGCTTGG+TGG | - | chr2_1:18996904-18996923 | Msa0199720:intron | 55.0% | |
| CCACTAACCCAGGCAACAAC+AGG | + | chr2_1:18996982-18997001 | None:intergenic | 55.0% | |
| ! | CCTGTTGTTGCCTGGGTTAG+TGG | - | chr2_1:18996979-18996998 | Msa0199720:intron | 55.0% |
| AGGTCCTCAGGGATTTGTGG+AGG | + | chr2_1:18997432-18997451 | None:intergenic | 55.0% | |
| GATCACGGTCCTTGTGTCTC+TGG | - | chr2_1:18997965-18997984 | Msa0199720:intron | 55.0% | |
| ACTATTGTGACAGCGAGGGC+TGG | - | chr2_1:18997998-18998017 | Msa0199720:intron | 55.0% | |
| CTATTGTGACAGCGAGGGCT+GGG | - | chr2_1:18997999-18998018 | Msa0199720:intron | 55.0% | |
| TCAATGGCACCCCCAAATCG+TGG | + | chr2_1:18998186-18998205 | None:intergenic | 55.0% | |
| AGGTGTAAGCCCCTGTGACA+AGG | + | chr2_1:18998434-18998453 | None:intergenic | 55.0% | |
| AGAGTACATCCTCCCATGGG+TGG | + | chr2_1:18999167-18999186 | None:intergenic | 55.0% | |
| ! | TGCGGGAAAATCCCGACTCG+AGG | + | chr2_1:18994241-18994260 | None:intergenic | 60.0% |
| AGCAGCCATGGATGATGCGG+CGG | + | chr2_1:18995584-18995603 | None:intergenic | 60.0% | |
| GAATGCCTCCGACAGTGGCT+GGG | + | chr2_1:18995801-18995820 | None:intergenic | 60.0% | |
| TGAATGCCTCCGACAGTGGC+TGG | + | chr2_1:18995802-18995821 | None:intergenic | 60.0% | |
| CAGGCCTGTAGAGCTTGGAC+TGG | + | chr2_1:18995876-18995895 | None:intergenic | 60.0% | |
| CAGTCCAAGCTCTACAGGCC+TGG | - | chr2_1:18995874-18995893 | Msa0199720:intron | 60.0% | |
| GGTGAGGAGCCATGCTATGC+TGG | - | chr2_1:18997634-18997653 | Msa0199720:intron | 60.0% | |
| GTGTGGCAGGAATAGGGCAC+AGG | - | chr2_1:18998491-18998510 | Msa0199720:intron | 60.0% | |
| AGCCACTATACCGCCACCCA+TGG | - | chr2_1:18999151-18999170 | Msa0199720:intron | 60.0% | |
| GCCACTATACCGCCACCCAT+GGG | - | chr2_1:18999152-18999171 | Msa0199720:intron | 60.0% | |
| ! | TCCCATGGGTGGCGGTATAG+TGG | + | chr2_1:18999156-18999175 | None:intergenic | 60.0% |
| ACTATACCGCCACCCATGGG+AGG | - | chr2_1:18999155-18999174 | Msa0199720:intron | 60.0% | |
| GTACATCCTCCCATGGGTGG+CGG | + | chr2_1:18999164-18999183 | None:intergenic | 60.0% | |
| CAGTGCCGCCGCATCATCCA+TGG | - | chr2_1:18995576-18995595 | Msa0199720:intron | 65.0% | |
| ATTGGCCCAGCCACTGTCGG+AGG | - | chr2_1:18995793-18995812 | Msa0199720:intron | 65.0% | |
| TGTGACAGCGAGGGCTGGGA+AGG | - | chr2_1:18998003-18998022 | Msa0199720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 18993630 | 18999555 | 18993630 | ID=Msa0199720;Name=Msa0199720 |
| chr2_1 | mRNA | 18993630 | 18999555 | 18993630 | ID=Msa0199720-mRNA-1;Parent=Msa0199720;Name=Msa0199720-mRNA-1;_AED=0.11;_eAED=0.11;_QI=262|0.93|0.94|1|0.93|0.88|17|358|609 |
| chr2_1 | exon | 18993630 | 18994063 | 18993630 | ID=Msa0199720-mRNA-1:exon:7954;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18994280 | 18994564 | 18994280 | ID=Msa0199720-mRNA-1:exon:7953;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18994673 | 18994743 | 18994673 | ID=Msa0199720-mRNA-1:exon:7952;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18994943 | 18995019 | 18994943 | ID=Msa0199720-mRNA-1:exon:7951;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18995136 | 18995241 | 18995136 | ID=Msa0199720-mRNA-1:exon:7950;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18995423 | 18995550 | 18995423 | ID=Msa0199720-mRNA-1:exon:7949;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18995663 | 18995795 | 18995663 | ID=Msa0199720-mRNA-1:exon:7948;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18995911 | 18996039 | 18995911 | ID=Msa0199720-mRNA-1:exon:7947;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18996138 | 18996293 | 18996138 | ID=Msa0199720-mRNA-1:exon:7946;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18996420 | 18996496 | 18996420 | ID=Msa0199720-mRNA-1:exon:7945;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18996610 | 18996670 | 18996610 | ID=Msa0199720-mRNA-1:exon:7944;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18997264 | 18997398 | 18997264 | ID=Msa0199720-mRNA-1:exon:7943;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18997480 | 18997606 | 18997480 | ID=Msa0199720-mRNA-1:exon:7942;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18997908 | 18997973 | 18997908 | ID=Msa0199720-mRNA-1:exon:7941;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18998116 | 18998218 | 18998116 | ID=Msa0199720-mRNA-1:exon:7940;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18998332 | 18998458 | 18998332 | ID=Msa0199720-mRNA-1:exon:7939;Parent=Msa0199720-mRNA-1 |
| chr2_1 | exon | 18999321 | 18999555 | 18999321 | ID=Msa0199720-mRNA-1:exon:7938;Parent=Msa0199720-mRNA-1 |
| chr2_1 | five_prime_UTR | 18999321 | 18999555 | 18999321 | ID=Msa0199720-mRNA-1:five_prime_utr;Parent=Msa0199720-mRNA-1 |
| chr2_1 | five_prime_UTR | 18998432 | 18998458 | 18998432 | ID=Msa0199720-mRNA-1:five_prime_utr;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18998332 | 18998431 | 18998332 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18998116 | 18998218 | 18998116 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18997908 | 18997973 | 18997908 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18997480 | 18997606 | 18997480 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18997264 | 18997398 | 18997264 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18996610 | 18996670 | 18996610 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18996420 | 18996496 | 18996420 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18996138 | 18996293 | 18996138 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18995911 | 18996039 | 18995911 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18995663 | 18995795 | 18995663 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18995423 | 18995550 | 18995423 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18995136 | 18995241 | 18995136 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18994943 | 18995019 | 18994943 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18994673 | 18994743 | 18994673 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18994280 | 18994564 | 18994280 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | CDS | 18993988 | 18994063 | 18993988 | ID=Msa0199720-mRNA-1:cds;Parent=Msa0199720-mRNA-1 |
| chr2_1 | three_prime_UTR | 18993630 | 18993987 | 18993630 | ID=Msa0199720-mRNA-1:three_prime_utr;Parent=Msa0199720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
