Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183700 | XP_013470287.1 | 98.325 | 418 | 7 | 0 | 1 | 418 | 1 | 418 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183700 | sp|F4JCU3|MVD2_ARATH | 80.668 | 419 | 80 | 1 | 1 | 418 | 1 | 419 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183700 | A0A072W240 | 98.325 | 418 | 7 | 0 | 1 | 418 | 1 | 418 | 0.0 | 853 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015100 | Msa0183700 | -0.813625 | 2.328085e-51 | -8.615850e-47 |
| Msa0044170 | Msa0183700 | 0.816592 | 5.108929e-52 | -8.615850e-47 |
| Msa0049770 | Msa0183700 | -0.810620 | 1.052755e-50 | -8.615850e-47 |
| Msa0051100 | Msa0183700 | -0.800405 | 1.463523e-48 | -8.615850e-47 |
| Msa0090850 | Msa0183700 | 0.801845 | 7.430763e-49 | -8.615850e-47 |
| Msa0183700 | Msa0199720 | 0.863351 | 2.647958e-64 | -8.615850e-47 |
| Msa0183700 | Msa0216550 | -0.808743 | 2.665305e-50 | -8.615850e-47 |
| Msa0183700 | Msa0242260 | 0.860028 | 2.748093e-63 | -8.615850e-47 |
| Msa0183700 | Msa0280470 | 0.848496 | 5.906151e-60 | -8.615850e-47 |
| Msa0183700 | Msa0295850 | -0.819537 | 1.102722e-52 | -8.615850e-47 |
| Msa0183700 | Msa0319690 | 0.890499 | 9.323084e-74 | -8.615850e-47 |
| Msa0183700 | Msa0437540 | 0.857079 | 2.083188e-62 | -8.615850e-47 |
| Msa0183700 | Msa0547200 | 0.807613 | 4.640520e-50 | -8.615850e-47 |
| Msa0183700 | Msa0601920 | 0.845437 | 4.063862e-59 | -8.615850e-47 |
| Msa0183700 | Msa0643020 | 0.844467 | 7.424772e-59 | -8.615850e-47 |
| Msa0183700 | Msa0659300 | 0.810845 | 9.414340e-51 | -8.615850e-47 |
| Msa0183700 | Msa0682730 | 0.804720 | 1.886561e-49 | -8.615850e-47 |
| Msa0183700 | Msa0999590 | -0.823019 | 1.735408e-53 | -8.615850e-47 |
| Msa0183700 | Msa1053990 | 0.815709 | 8.046542e-52 | -8.615850e-47 |
| Msa0183700 | Msa1080790 | -0.805374 | 1.377023e-49 | -8.615850e-47 |
| Msa0183700 | Msa1118930 | -0.806443 | 8.206370e-50 | -8.615850e-47 |
| Msa0183700 | Msa1141250 | 0.850710 | 1.423743e-60 | -8.615850e-47 |
| Msa0183700 | Msa1208340 | -0.801958 | 7.044114e-49 | -8.615850e-47 |
| Msa0183700 | Msa1211390 | -0.802052 | 6.736830e-49 | -8.615850e-47 |
| Msa0183700 | Msa1237260 | -0.829818 | 4.160363e-55 | -8.615850e-47 |
| Msa0183700 | Msa1240060 | 0.815604 | 8.489800e-52 | -8.615850e-47 |
| Msa0183700 | Msa1306200 | -0.806587 | 7.651513e-50 | -8.615850e-47 |
| Msa0183700 | Msa1317710 | -0.813560 | 2.406223e-51 | -8.615850e-47 |
| Msa0183700 | Msa1320530 | 0.823197 | 1.576443e-53 | -8.615850e-47 |
| Msa0183700 | Msa1370630 | -0.819046 | 1.426238e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183700 | MtrunA17_Chr1g0210791 | 98.325 | 418 | 7 | 0 | 1 | 418 | 1 | 418 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183700 | AT3G54250.1 | 80.668 | 419 | 80 | 1 | 1 | 418 | 1 | 419 | 0.0 | 697 |
| Msa0183700 | AT2G38700.1 | 76.372 | 419 | 91 | 2 | 1 | 418 | 1 | 412 | 0.0 | 654 |
| Msa0183700 | AT3G54250.2 | 84.039 | 307 | 49 | 0 | 1 | 307 | 1 | 307 | 0.0 | 530 |
Find 160 sgRNAs with CRISPR-Local
Find 472 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCCCATGTACCTTATT+TGG | 0.031696 | 1_4:-72683891 | None:intergenic |
| TTCCTCTTTGATTGATTTAT+TGG | 0.066713 | 1_4:+72677775 | Msa0183700:five_prime_UTR |
| GCTCTTCTCAACAGTGAAAA+TGG | 0.180412 | 1_4:+72683863 | Msa0183700:CDS |
| CTTCCCTCCAGTTACATTAT+TGG | 0.191653 | 1_4:+72683665 | Msa0183700:intron |
| GGAATATTGTCTTTAATTTC+TGG | 0.195761 | 1_4:-72683755 | None:intergenic |
| GAAGATTCCAGAGCTGTTTA+AGG | 0.204279 | 1_4:+72678665 | Msa0183700:CDS |
| AGTGCTTGTCGTAGCTTATT+TGG | 0.220437 | 1_4:+72681191 | Msa0183700:CDS |
| GTGTAGGAAATTTCTCTTTC+CGG | 0.230107 | 1_4:+72678640 | Msa0183700:intron |
| GGGATTTGTGAAGTGGAAAA+TGG | 0.242630 | 1_4:+72681214 | Msa0183700:CDS |
| TGATGTTGAGGATAATAAAA+AGG | 0.260260 | 1_4:+72678708 | Msa0183700:CDS |
| GTGCTTGTCGTAGCTTATTT+GGG | 0.264802 | 1_4:+72681192 | Msa0183700:CDS |
| ATCATTAACAGGTAAGATTA+GGG | 0.303873 | 1_4:-72677888 | None:intergenic |
| GCTCAGGCGAATTAAATTAA+AGG | 0.305398 | 1_4:-72684155 | None:intergenic |
| TATCATTCATGTAAAATATA+GGG | 0.309352 | 1_4:-72682645 | None:intergenic |
| GCATGGTGATTTGATTTAAT+AGG | 0.311492 | 1_4:+72677531 | Msa0183700:five_prime_UTR |
| GCCAAAGAGGATACTGAAAA+TGG | 0.316786 | 1_4:+72682528 | Msa0183700:CDS |
| TGGTTGATCTATTCTTCATT+AGG | 0.316789 | 1_4:+72683920 | Msa0183700:three_prime_UTR |
| CTGTTGAGGTCATCTGAATT+TGG | 0.317231 | 1_4:-72683554 | None:intergenic |
| TATCATTAACAGGTAAGATT+AGG | 0.322166 | 1_4:-72677889 | None:intergenic |
| GTATCATTCATGTAAAATAT+AGG | 0.322715 | 1_4:-72682646 | None:intergenic |
| CATTGCTGTGATCAAGTATT+GGG | 0.327233 | 1_4:+72677850 | Msa0183700:CDS |
| AACAGGTCCCCTTCCTGGTC+TGG | 0.327487 | 1_4:-72683819 | None:intergenic |
| TATATATATTAGTTAGTAAT+GGG | 0.329149 | 1_4:-72677691 | None:intergenic |
| AACAAAACAAGGAAAGAGTT+AGG | 0.335219 | 1_4:+72677564 | Msa0183700:five_prime_UTR |
| TTATTTATTCATTTCCCATT+TGG | 0.336742 | 1_4:-72677611 | None:intergenic |
| TGTAGGAAATTTCTCTTTCC+GGG | 0.344687 | 1_4:+72678641 | Msa0183700:intron |
| CCAGTTTCATGCAGTTTGTC+TGG | 0.349580 | 1_4:+72682612 | Msa0183700:CDS |
| GAAAATGGGCTTCCCAAATA+AGG | 0.349886 | 1_4:+72683878 | Msa0183700:CDS |
| CGGTTCTAATTGCACGTAAT+AGG | 0.354248 | 1_4:+72683486 | Msa0183700:CDS |
| TTTGATTGATTTATTGGAAA+TGG | 0.357406 | 1_4:+72677781 | Msa0183700:exon |
| ATTTCCCATGTACCTTATTT+GGG | 0.363262 | 1_4:-72683890 | None:intergenic |
| CGTGCAATTAGAACCGCATT+TGG | 0.371696 | 1_4:-72683479 | None:intergenic |
| TATTTCTATTATTATTTGGT+TGG | 0.373112 | 1_4:-72677464 | None:intergenic |
| CTTCATTAGGCTTATCTGTC+CGG | 0.383929 | 1_4:+72683933 | Msa0183700:three_prime_UTR |
| CTTCCCCACTGCAGCTGGAT+TGG | 0.391119 | 1_4:+72678792 | Msa0183700:CDS |
| GAGATTAAATTGAATTCGTT+CGG | 0.405752 | 1_4:-72677663 | None:intergenic |
| CAATTTGCTCCAATCCTCCT+TGG | 0.409304 | 1_4:-72678743 | None:intergenic |
| CCAGACAAACTGCATGAAAC+TGG | 0.411135 | 1_4:-72682612 | None:intergenic |
| AACAACTTCCCCACTGCAGC+TGG | 0.415060 | 1_4:+72678787 | Msa0183700:CDS |
| TGGAAATGGCGGGTGATAGT+TGG | 0.416905 | 1_4:+72677795 | Msa0183700:exon |
| AAAGCAACTTCTGAATCAAA+AGG | 0.417167 | 1_4:-72683520 | None:intergenic |
| AATTATGTCATGGGTACAAC+AGG | 0.421940 | 1_4:-72684002 | None:intergenic |
| GAGAAGAGAATCCATCCAAA+TGG | 0.429630 | 1_4:+72677596 | Msa0183700:five_prime_UTR |
| CTTTCATCAGTAAGCACAAC+AGG | 0.429825 | 1_4:-72683836 | None:intergenic |
| TTTCTTAGATGACCCTTTCA+AGG | 0.430043 | 1_4:+72683976 | Msa0183700:three_prime_UTR |
| AGCACAACAGGTCCCCTTCC+TGG | 0.433113 | 1_4:-72683824 | None:intergenic |
| CTAGGTTAGCTCTCGGCAAA+AGG | 0.434194 | 1_4:+72682038 | Msa0183700:intron |
| CAAATTCAGATGACCTCAAC+AGG | 0.435218 | 1_4:+72683555 | Msa0183700:CDS |
| GCAAAAGATGCTGGGATCAA+TGG | 0.438234 | 1_4:+72683701 | Msa0183700:CDS |
| ACACTGATACTATCATTAAC+AGG | 0.448731 | 1_4:-72677899 | None:intergenic |
| AAGTCAATTGCAAAAGATGC+TGG | 0.449709 | 1_4:+72683692 | Msa0183700:CDS |
| CTCTTCTCAACAGTGAAAAT+GGG | 0.455253 | 1_4:+72683864 | Msa0183700:CDS |
| AAGATTCCAGAGCTGTTTAA+GGG | 0.458336 | 1_4:+72678666 | Msa0183700:CDS |
| GGATTTGTGAAGTGGAAAAT+GGG | 0.468572 | 1_4:+72681215 | Msa0183700:CDS |
| TTATATATATTAGTTAGTAA+TGG | 0.470292 | 1_4:-72677692 | None:intergenic |
| TGACATTCATTAGCTTCCCC+AGG | 0.470709 | 1_4:-72681012 | None:intergenic |
| GGAAATGGCGGGTGATAGTT+GGG | 0.471328 | 1_4:+72677796 | Msa0183700:exon |
| CAAGATCGTATGTGGCTCAA+TGG | 0.475195 | 1_4:+72677983 | Msa0183700:CDS |
| GGATCTCCCTTAAACAGCTC+TGG | 0.477766 | 1_4:-72678672 | None:intergenic |
| ACATTGCTGTGATCAAGTAT+TGG | 0.482733 | 1_4:+72677849 | Msa0183700:CDS |
| GTAGCTTATACGTTTGATGC+AGG | 0.483477 | 1_4:+72683455 | Msa0183700:CDS |
| AAGGAAACTAGCAGCACCTC+AGG | 0.484840 | 1_4:+72682057 | Msa0183700:CDS |
| CCTTTCAACAAGATCGTATG+TGG | 0.485330 | 1_4:+72677975 | Msa0183700:CDS |
| TTGTCTTTAATTTCTGGAGG+TGG | 0.485942 | 1_4:-72683749 | None:intergenic |
| TTATTCATTTCCCATTTGGA+TGG | 0.486621 | 1_4:-72677607 | None:intergenic |
| TGATATTTATAGGAGGAGAA+TGG | 0.489664 | 1_4:+72681310 | Msa0183700:intron |
| TTAAGATCACCAAGGAGGAT+TGG | 0.489853 | 1_4:+72678734 | Msa0183700:CDS |
| GGCTTCCCAAATAAGGTACA+TGG | 0.490515 | 1_4:+72683885 | Msa0183700:exon |
| AACTTGCTGATGAAAAGCAT+TGG | 0.492166 | 1_4:+72681353 | Msa0183700:CDS |
| AAACTGGTTGCTATCGGTAC+AGG | 0.492574 | 1_4:-72682596 | None:intergenic |
| TCTTTAATTTCTGGAGGTGG+TGG | 0.493387 | 1_4:-72683746 | None:intergenic |
| ACTATATACAGGCAAGGATC+AGG | 0.494638 | 1_4:+72681167 | Msa0183700:intron |
| AAAGGTGCTCAATTCAATAC+AGG | 0.495352 | 1_4:-72684137 | None:intergenic |
| TGCAAAATCACGGTTTCGAA+TGG | 0.495401 | 1_4:-72682557 | None:intergenic |
| ACCTTGCAATAGCAGACAGC+TGG | 0.498435 | 1_4:-72681048 | None:intergenic |
| AGAAGAGAATCCATCCAAAT+GGG | 0.499644 | 1_4:+72677597 | Msa0183700:five_prime_UTR |
| GTACAACAGGCTTCCTTGAA+AGG | 0.505102 | 1_4:-72683989 | None:intergenic |
| AAGCAGCAGTAGAACGAAGA+AGG | 0.506291 | 1_4:+72677637 | Msa0183700:five_prime_UTR |
| TGCTGGGATCAATGGAATAG+AGG | 0.509843 | 1_4:+72683709 | Msa0183700:CDS |
| TGGATTGGCTTCATCAGCTG+CGG | 0.515526 | 1_4:+72678807 | Msa0183700:CDS |
| AACACAAATAATTATGTCAT+GGG | 0.518520 | 1_4:-72684011 | None:intergenic |
| CCGTTCAGAAGAAGCTCCAC+AGG | 0.520575 | 1_4:+72682816 | Msa0183700:CDS |
| TACTTTATATGCACCAGACC+AGG | 0.522597 | 1_4:+72683806 | Msa0183700:CDS |
| TGGTGATTTGATTTAATAGG+AGG | 0.523567 | 1_4:+72677534 | Msa0183700:five_prime_UTR |
| GAACACAAATAATTATGTCA+TGG | 0.523799 | 1_4:-72684012 | None:intergenic |
| ACTTGCTGATGAAAAGCATT+GGG | 0.525139 | 1_4:+72681354 | Msa0183700:CDS |
| TACAACAGGCTTCCTTGAAA+GGG | 0.527193 | 1_4:-72683988 | None:intergenic |
| TTGAGGTCATCTGAATTTGG+AGG | 0.527987 | 1_4:-72683551 | None:intergenic |
| AGCAGCAGTAGAACGAAGAA+GGG | 0.529653 | 1_4:+72677638 | Msa0183700:five_prime_UTR |
| GCTGCGGGTTTCGCTTGTCT+CGG | 0.530800 | 1_4:+72678823 | Msa0183700:CDS |
| TGCTTGTCGTAGCTTATTTG+GGG | 0.531557 | 1_4:+72681193 | Msa0183700:CDS |
| TGCAGTGGGGAAGTTGTTGT+AGG | 0.531785 | 1_4:-72678782 | None:intergenic |
| ACAAAACAAGGAAAGAGTTA+GGG | 0.535738 | 1_4:+72677565 | Msa0183700:five_prime_UTR |
| ACAGCTCTGGAATCTTCCCC+CGG | 0.536812 | 1_4:-72678659 | None:intergenic |
| GGATTGGCTTCATCAGCTGC+GGG | 0.537741 | 1_4:+72678808 | Msa0183700:CDS |
| TATTCCATCACAAAAGTACA+AGG | 0.548644 | 1_4:+72683772 | Msa0183700:CDS |
| AAGCAACTTCTGAATCAAAA+GGG | 0.555123 | 1_4:-72683519 | None:intergenic |
| AAGTTGAACTAGCAAAGCTC+AGG | 0.555312 | 1_4:-72684171 | None:intergenic |
| TTTATTTCTAGGTTAGCTCT+CGG | 0.556502 | 1_4:+72682031 | Msa0183700:intron |
| ATCATTCATGTAAAATATAG+GGG | 0.557388 | 1_4:-72682644 | None:intergenic |
| TGCATGAAACTGGTTGCTAT+CGG | 0.559504 | 1_4:-72682602 | None:intergenic |
| TAGCTTATACGTTTGATGCA+GGG | 0.567321 | 1_4:+72683456 | Msa0183700:CDS |
| TGAAGCCAATCCAGCTGCAG+TGG | 0.570482 | 1_4:-72678797 | None:intergenic |
| AATGAAGAATAGATCAACCA+TGG | 0.572623 | 1_4:-72683917 | None:intergenic |
| GATTGAATTGAATTATGTAA+CGG | 0.573370 | 1_4:-72677431 | None:intergenic |
| AAAGGAAGGACTAACAGAAA+CGG | 0.573695 | 1_4:-72677957 | None:intergenic |
| TATATGCACCAGACCAGGAA+GGG | 0.575319 | 1_4:+72683811 | Msa0183700:CDS |
| GACATTCATTAGCTTCCCCA+GGG | 0.579343 | 1_4:-72681011 | None:intergenic |
| AATAGGAAATAGTGCCAAAG+AGG | 0.581666 | 1_4:+72682515 | Msa0183700:intron |
| ATATTGTCTTTAATTTCTGG+AGG | 0.581787 | 1_4:-72683752 | None:intergenic |
| TTCCAATAAATCAATCAAAG+AGG | 0.583411 | 1_4:-72677777 | None:intergenic |
| GAAGCCAATCCAGCTGCAGT+GGG | 0.584983 | 1_4:-72678796 | None:intergenic |
| TTCCATCACAAAAGTACAAG+GGG | 0.586717 | 1_4:+72683774 | Msa0183700:CDS |
| TAATCAGCATTGTTGACAAG+TGG | 0.588743 | 1_4:+72682791 | Msa0183700:CDS |
| TGCTCAATTCAATACAGGAA+AGG | 0.588746 | 1_4:-72684132 | None:intergenic |
| AGTCAATTGCAAAAGATGCT+GGG | 0.589588 | 1_4:+72683693 | Msa0183700:CDS |
| CAACATCACACGCGCGAGCA+CGG | 0.590089 | 1_4:-72678693 | None:intergenic |
| TGCTCGCGCGTGTGATGTTG+AGG | 0.590241 | 1_4:+72678696 | Msa0183700:CDS |
| CCTGTGGAGCTTCTTCTGAA+CGG | 0.591583 | 1_4:-72682816 | None:intergenic |
| ATACTTGATCACAGCAATGT+TGG | 0.591879 | 1_4:-72677846 | None:intergenic |
| ATTGATTTATTGGAAATGGC+GGG | 0.593123 | 1_4:+72677785 | Msa0183700:exon |
| ATACGATCTTGTTGAAAGGA+AGG | 0.593700 | 1_4:-72677971 | None:intergenic |
| ACTTGTTATTGTTATTGCTG+TGG | 0.594012 | 1_4:+72681381 | Msa0183700:CDS |
| GGGTGATAGTTGGGTACTGA+TGG | 0.595158 | 1_4:+72677805 | Msa0183700:CDS |
| GTTGTGGTGCAAAGATGAGC+GGG | 0.596599 | 1_4:-72677932 | None:intergenic |
| TATGTTTATTGAATATTGCA+TGG | 0.600725 | 1_4:+72677514 | Msa0183700:five_prime_UTR |
| CCACATACGATCTTGTTGAA+AGG | 0.601733 | 1_4:-72677975 | None:intergenic |
| AACAGTATCACGCATTCCTG+AGG | 0.602816 | 1_4:-72682073 | None:intergenic |
| TCGTATGTGGCTCAATGGCA+AGG | 0.603313 | 1_4:+72677988 | Msa0183700:CDS |
| TGAGGTCATCTGAATTTGGA+GGG | 0.603420 | 1_4:-72683550 | None:intergenic |
| GCCAGCTGTCTGCTATTGCA+AGG | 0.603691 | 1_4:+72681047 | Msa0183700:CDS |
| GTGCAACACGAGGCCACCGT+GGG | 0.613401 | 1_4:-72677395 | None:intergenic |
| GCTTGTCGTAGCTTATTTGG+GGG | 0.616141 | 1_4:+72681194 | Msa0183700:CDS |
| GTAGGAAATTTCTCTTTCCG+GGG | 0.619131 | 1_4:+72678642 | Msa0183700:intron |
| GATTGATTTATTGGAAATGG+CGG | 0.620199 | 1_4:+72677784 | Msa0183700:exon |
| ATATGCACCAGACCAGGAAG+GGG | 0.629282 | 1_4:+72683812 | Msa0183700:CDS |
| ATGAAGAATAGATCAACCAT+GGG | 0.632388 | 1_4:-72683916 | None:intergenic |
| GAGGTCCCGTAAACAAAACA+AGG | 0.633143 | 1_4:+72677553 | Msa0183700:five_prime_UTR |
| TTGATCACAGCAATGTTGGT+TGG | 0.639254 | 1_4:-72677842 | None:intergenic |
| ACATGAATGATACATCCCAT+AGG | 0.641400 | 1_4:+72682656 | Msa0183700:CDS |
| ATTCCATCACAAAAGTACAA+GGG | 0.644199 | 1_4:+72683773 | Msa0183700:CDS |
| GCAGCAGTAGAACGAAGAAG+GGG | 0.655083 | 1_4:+72677639 | Msa0183700:five_prime_UTR |
| CTGAGTAACAGATCTAAGTG+AGG | 0.656597 | 1_4:-72677744 | None:intergenic |
| GTTTGATGCAGGGCCAAATG+CGG | 0.656830 | 1_4:+72683466 | Msa0183700:CDS |
| TCATTCATGTAAAATATAGG+GGG | 0.658384 | 1_4:-72682643 | None:intergenic |
| GCTTCCCAAATAAGGTACAT+GGG | 0.661948 | 1_4:+72683886 | Msa0183700:exon |
| AGTTGTGGTGCAAAGATGAG+CGG | 0.662479 | 1_4:-72677933 | None:intergenic |
| CGTGCAACACGAGGCCACCG+TGG | 0.662723 | 1_4:-72677396 | None:intergenic |
| GAATGGAAGTGATAGTCTTG+CGG | 0.663425 | 1_4:+72681327 | Msa0183700:CDS |
| TAGCTTGCTCGTGCAACACG+AGG | 0.663910 | 1_4:-72677405 | None:intergenic |
| ACTAACAGAAACGGTAGTTG+TGG | 0.671981 | 1_4:-72677948 | None:intergenic |
| ATTGCTGTGATCAAGTATTG+GGG | 0.675109 | 1_4:+72677851 | Msa0183700:CDS |
| GTACATGGGAAATATTCCCA+TGG | 0.678115 | 1_4:+72683900 | Msa0183700:three_prime_UTR |
| TTATATGCACCAGACCAGGA+AGG | 0.679375 | 1_4:+72683810 | Msa0183700:CDS |
| TAGGAAATTTCTCTTTCCGG+GGG | 0.687639 | 1_4:+72678643 | Msa0183700:intron |
| AACAAGGAAAGAGTTAGGGT+AGG | 0.690689 | 1_4:+72677569 | Msa0183700:five_prime_UTR |
| GGGTATTAAGATCACCAAGG+AGG | 0.716838 | 1_4:+72678729 | Msa0183700:CDS |
| AAAGGGTATTAAGATCACCA+AGG | 0.729322 | 1_4:+72678726 | Msa0183700:CDS |
| TCCATCACAAAAGTACAAGG+GGG | 0.737564 | 1_4:+72683775 | Msa0183700:CDS |
| AAGCCAATCCAGCTGCAGTG+GGG | 0.738884 | 1_4:-72678795 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATTAGTTAGTAAT+GGG | - | chr1_4:72677694-72677713 | None:intergenic | 10.0% |
| !! | TTATATATATTAGTTAGTAA+TGG | - | chr1_4:72677695-72677714 | None:intergenic | 10.0% |
| !!! | TTTTACTTTCAATTTTTAAT+TGG | + | chr1_4:72678595-72678614 | Msa0183700:intron | 10.0% |
| !! | ATAATTATCTAATAAAATTG+TGG | - | chr1_4:72680199-72680218 | None:intergenic | 10.0% |
| !! | CAAATAAATAAAAAATTATG+TGG | - | chr1_4:72681895-72681914 | None:intergenic | 10.0% |
| !!! | TATTTCTATTATTATTTGGT+TGG | - | chr1_4:72677467-72677486 | None:intergenic | 15.0% |
| !!! | TTTAAATTTTCAATTCTTGA+TGG | + | chr1_4:72678063-72678082 | Msa0183700:intron | 15.0% |
| !!! | TTAAATTTTCAATTCTTGAT+GGG | + | chr1_4:72678064-72678083 | Msa0183700:intron | 15.0% |
| !!! | CATTTTTTATATGTATTTGA+TGG | + | chr1_4:72678379-72678398 | Msa0183700:intron | 15.0% |
| !! | ATAACTATAATAGATTGAAT+CGG | + | chr1_4:72680249-72680268 | Msa0183700:intron | 15.0% |
| !!! | CTCAGATTTTTATTAATTAA+TGG | - | chr1_4:72680378-72680397 | None:intergenic | 15.0% |
| !! | CATTAATTAATAAAAATCTG+AGG | + | chr1_4:72680376-72680395 | Msa0183700:intron | 15.0% |
| !! | AGATTATTGAATAAAGAATA+AGG | - | chr1_4:72680775-72680794 | None:intergenic | 15.0% |
| !! | TTCTTTATTCAATAATCTTT+AGG | + | chr1_4:72680777-72680796 | Msa0183700:intron | 15.0% |
| !!! | TTACTATTACTTTTATATGA+GGG | + | chr1_4:72680928-72680947 | Msa0183700:intron | 15.0% |
| !!! | TATTTTATTTAAATCTCTGT+GGG | + | chr1_4:72681247-72681266 | Msa0183700:intron | 15.0% |
| !!! | TGTATTCTTTTGATATTTAT+AGG | + | chr1_4:72681300-72681319 | Msa0183700:intron | 15.0% |
| !!! | TTTCTTTAGAAATATACATT+GGG | - | chr1_4:72682212-72682231 | None:intergenic | 15.0% |
| !!! | ATTTCTTTAGAAATATACAT+TGG | - | chr1_4:72682213-72682232 | None:intergenic | 15.0% |
| !! | TTATATAAATAATTATGCCA+TGG | + | chr1_4:72682441-72682460 | Msa0183700:intron | 15.0% |
| !! | TATCATTCATGTAAAATATA+GGG | - | chr1_4:72682648-72682667 | None:intergenic | 15.0% |
| !! | TAATTCATTAGTTACTTATT+TGG | + | chr1_4:72683032-72683051 | Msa0183700:intron | 15.0% |
| !! | TTATTTGGAAAACAAATTAA+AGG | + | chr1_4:72683047-72683066 | Msa0183700:intron | 15.0% |
| !! | CATATAGAGTATATATTATA+CGG | + | chr1_4:72683357-72683376 | Msa0183700:intron | 15.0% |
| !! | GATTGAATTGAATTATGTAA+CGG | - | chr1_4:72677434-72677453 | None:intergenic | 20.0% |
| !! | TATGTTTATTGAATATTGCA+TGG | + | chr1_4:72677514-72677533 | Msa0183700:five_prime_UTR | 20.0% |
| !! | TTATTTATTCATTTCCCATT+TGG | - | chr1_4:72677614-72677633 | None:intergenic | 20.0% |
| !!! | TTTGATTGATTTATTGGAAA+TGG | + | chr1_4:72677781-72677800 | Msa0183700:exon | 20.0% |
| !! | AAGTTTAAAGAGAAAAAAGA+GGG | - | chr1_4:72678022-72678041 | None:intergenic | 20.0% |
| !! | AAAGTTTAAAGAGAAAAAAG+AGG | - | chr1_4:72678023-72678042 | None:intergenic | 20.0% |
| !!! | TACTTTCAATTTTTAATTGG+TGG | + | chr1_4:72678598-72678617 | Msa0183700:intron | 20.0% |
| !! | AATGATAAGAAGAAAATTAG+AGG | + | chr1_4:72679281-72679300 | Msa0183700:intron | 20.0% |
| !! | ATGATAAGAAGAAAATTAGA+GGG | + | chr1_4:72679282-72679301 | Msa0183700:intron | 20.0% |
| !! | AGAATAACCAAAATATTCAT+GGG | - | chr1_4:72679379-72679398 | None:intergenic | 20.0% |
| !! | TAGAATAACCAAAATATTCA+TGG | - | chr1_4:72679380-72679399 | None:intergenic | 20.0% |
| !! | GTTGAACTAATAAATGTTAT+TGG | + | chr1_4:72679871-72679890 | Msa0183700:intron | 20.0% |
| !! | CTTATTAATAACTCAATACT+TGG | - | chr1_4:72680617-72680636 | None:intergenic | 20.0% |
| !! | TTCAAACTTTATGTTCTTTA+AGG | + | chr1_4:72680808-72680827 | Msa0183700:intron | 20.0% |
| !!! | GTTACTATTACTTTTATATG+AGG | + | chr1_4:72680927-72680946 | Msa0183700:intron | 20.0% |
| !! | CTGTATATAGTAACAATATT+CGG | - | chr1_4:72681158-72681177 | None:intergenic | 20.0% |
| !!! | GTATTTTATTTAAATCTCTG+TGG | + | chr1_4:72681246-72681265 | Msa0183700:intron | 20.0% |
| !! | CAAAAGAATACAAATTACAA+TGG | - | chr1_4:72681292-72681311 | None:intergenic | 20.0% |
| !!! | ATTCTTTTGATATTTATAGG+AGG | + | chr1_4:72681303-72681322 | Msa0183700:intron | 20.0% |
| !! | TTTGTCTCTATTTAATTGAA+TGG | + | chr1_4:72681417-72681436 | Msa0183700:intron | 20.0% |
| !! | ATCATACCATAATACTAATT+TGG | + | chr1_4:72681797-72681816 | Msa0183700:intron | 20.0% |
| !! | ATATTGCCAAATTAGTATTA+TGG | - | chr1_4:72681806-72681825 | None:intergenic | 20.0% |
| !! | AAGATAAAAAATACTGCTTT+GGG | - | chr1_4:72681918-72681937 | None:intergenic | 20.0% |
| !! | CTAGAAATAAATAATGAGAT+GGG | - | chr1_4:72682022-72682041 | None:intergenic | 20.0% |
| !! | AAAGTAATATTCATCTAACA+TGG | - | chr1_4:72682170-72682189 | None:intergenic | 20.0% |
| !! | TAATCAAACTTAAATTACCA+TGG | - | chr1_4:72682461-72682480 | None:intergenic | 20.0% |
| !! | ATCATTCATGTAAAATATAG+GGG | - | chr1_4:72682647-72682666 | None:intergenic | 20.0% |
| !! | GTATCATTCATGTAAAATAT+AGG | - | chr1_4:72682649-72682668 | None:intergenic | 20.0% |
| !! | AAGATTTAGGAAAAAACAAT+CGG | - | chr1_4:72682975-72682994 | None:intergenic | 20.0% |
| !!! | ATACTTGATAATAATATGAG+AGG | - | chr1_4:72683228-72683247 | None:intergenic | 20.0% |
| !! | TATATAAACATCATTCATGT+GGG | - | chr1_4:72683318-72683337 | None:intergenic | 20.0% |
| !! | AACACAAATAATTATGTCAT+GGG | - | chr1_4:72684014-72684033 | None:intergenic | 20.0% |
| ! | GAGATTAAATTGAATTCGTT+CGG | - | chr1_4:72677666-72677685 | None:intergenic | 25.0% |
| !! | TTCCTCTTTGATTGATTTAT+TGG | + | chr1_4:72677775-72677794 | Msa0183700:five_prime_UTR | 25.0% |
| ! | TTCCAATAAATCAATCAAAG+AGG | - | chr1_4:72677780-72677799 | None:intergenic | 25.0% |
| ! | ATCATTAACAGGTAAGATTA+GGG | - | chr1_4:72677891-72677910 | None:intergenic | 25.0% |
| ! | TATCATTAACAGGTAAGATT+AGG | - | chr1_4:72677892-72677911 | None:intergenic | 25.0% |
| !! | GCATTTTTATGTGTATATGT+TGG | + | chr1_4:72678104-72678123 | Msa0183700:intron | 25.0% |
| ! | TGAATATTTCTCGAATTCAT+TGG | + | chr1_4:72678191-72678210 | Msa0183700:intron | 25.0% |
| ! | ATGTAGTAATTTGAGAAAAC+TGG | - | chr1_4:72678272-72678291 | None:intergenic | 25.0% |
| ! | TGTGATAATAAACAATCAAG+TGG | - | chr1_4:72678361-72678380 | None:intergenic | 25.0% |
| ! | TGATGTTGAGGATAATAAAA+AGG | + | chr1_4:72678708-72678727 | Msa0183700:CDS | 25.0% |
| ! | GATGTTGAGGATAATAAAAA+GGG | + | chr1_4:72678709-72678728 | Msa0183700:CDS | 25.0% |
| ! | ATACTCATAACAATTACATG+TGG | - | chr1_4:72678928-72678947 | None:intergenic | 25.0% |
| ! | CAATAACCATTACAATTACA+TGG | - | chr1_4:72678967-72678986 | None:intergenic | 25.0% |
| ! | CATGTAATTGTAATGGTTAT+TGG | + | chr1_4:72678965-72678984 | Msa0183700:intron | 25.0% |
| ! | TAATCAATGACAATCAGATT+TGG | - | chr1_4:72679117-72679136 | None:intergenic | 25.0% |
| !! | GTTTAAGATCTAAATCAAAC+AGG | + | chr1_4:72679150-72679169 | Msa0183700:intron | 25.0% |
| !! | AATTTTCCCCATGAATATTT+TGG | + | chr1_4:72679369-72679388 | Msa0183700:intron | 25.0% |
| ! | GAATAACCAAAATATTCATG+GGG | - | chr1_4:72679378-72679397 | None:intergenic | 25.0% |
| !!! | ATTCTAGAGCAAATATTGAA+AGG | + | chr1_4:72679394-72679413 | Msa0183700:intron | 25.0% |
| ! | TTATTAGTTCAACTATGTTG+TGG | - | chr1_4:72679864-72679883 | None:intergenic | 25.0% |
| ! | ATAGAAAGAAAGAATATCGA+CGG | - | chr1_4:72679973-72679992 | None:intergenic | 25.0% |
| !!! | ATTTTTTCTGCAACAAAATC+CGG | - | chr1_4:72680099-72680118 | None:intergenic | 25.0% |
| ! | ATGTTTATTGTCTTATGGTT+TGG | + | chr1_4:72680737-72680756 | Msa0183700:intron | 25.0% |
| !! | AAACTTTATGTTCTTTAAGG+CGG | + | chr1_4:72680811-72680830 | Msa0183700:intron | 25.0% |
| ! | ACTAAAACAACATGGAAATT+AGG | - | chr1_4:72680888-72680907 | None:intergenic | 25.0% |
| ! | TTTATATGAGGGTTTATACT+AGG | + | chr1_4:72680939-72680958 | Msa0183700:intron | 25.0% |
| ! | TTTATGACTTTAAACTTGCA+AGG | + | chr1_4:72681081-72681100 | Msa0183700:intron | 25.0% |
| ! | CGAATATTGTTACTATATAC+AGG | + | chr1_4:72681156-72681175 | Msa0183700:intron | 25.0% |
| ! | AAGTATTAAATGGTATGTTG+TGG | + | chr1_4:72681485-72681504 | Msa0183700:intron | 25.0% |
| ! | ATACTAATTTGGCAATATTG+TGG | + | chr1_4:72681808-72681827 | Msa0183700:intron | 25.0% |
| ! | CAAGATAAAAAATACTGCTT+TGG | - | chr1_4:72681919-72681938 | None:intergenic | 25.0% |
| ! | CCTAGAAATAAATAATGAGA+TGG | - | chr1_4:72682023-72682042 | None:intergenic | 25.0% |
| !! | CCATCTCATTATTTATTTCT+AGG | + | chr1_4:72682020-72682039 | Msa0183700:intron | 25.0% |
| ! | TACTATTTGAGAGAGAAAAA+TGG | - | chr1_4:72682355-72682374 | None:intergenic | 25.0% |
| ! | AGTAAGCATGAATTTAAACA+CGG | + | chr1_4:72682371-72682390 | Msa0183700:intron | 25.0% |
| ! | TCATTCATGTAAAATATAGG+GGG | - | chr1_4:72682646-72682665 | None:intergenic | 25.0% |
| !!! | GTTTTAGAATATTGAGTGAT+TGG | - | chr1_4:72682920-72682939 | None:intergenic | 25.0% |
| ! | AAACTAAAAGAAACTTCCTA+TGG | + | chr1_4:72682936-72682955 | Msa0183700:intron | 25.0% |
| ! | GAACTTAGTATGAAAGATTT+AGG | - | chr1_4:72682988-72683007 | None:intergenic | 25.0% |
| ! | TGAATTACTTCTGATGTAAA+AGG | - | chr1_4:72683019-72683038 | None:intergenic | 25.0% |
| ! | TTTGGAAAACAAATTAAAGG+AGG | + | chr1_4:72683050-72683069 | Msa0183700:intron | 25.0% |
| ! | GTATATAAACATCATTCATG+TGG | - | chr1_4:72683319-72683338 | None:intergenic | 25.0% |
| ! | ATAGAAACCTATGAATTTGT+AGG | - | chr1_4:72683404-72683423 | None:intergenic | 25.0% |
| !! | ATATTGTCTTTAATTTCTGG+AGG | - | chr1_4:72683755-72683774 | None:intergenic | 25.0% |
| !! | GGAATATTGTCTTTAATTTC+TGG | - | chr1_4:72683758-72683777 | None:intergenic | 25.0% |
| !!! | ATATTTTGAGCTAATATAGC+CGG | - | chr1_4:72683955-72683974 | None:intergenic | 25.0% |
| ! | GAACACAAATAATTATGTCA+TGG | - | chr1_4:72684015-72684034 | None:intergenic | 25.0% |
| ! | GCATGGTGATTTGATTTAAT+AGG | + | chr1_4:72677531-72677550 | Msa0183700:five_prime_UTR | 30.0% |
| ! | TGGTGATTTGATTTAATAGG+AGG | + | chr1_4:72677534-72677553 | Msa0183700:five_prime_UTR | 30.0% |
| !!! | TCTTTCCTTGTTTTGTTTAC+GGG | - | chr1_4:72677561-72677580 | None:intergenic | 30.0% |
| !!! | CTCTTTCCTTGTTTTGTTTA+CGG | - | chr1_4:72677562-72677581 | None:intergenic | 30.0% |
| AACAAAACAAGGAAAGAGTT+AGG | + | chr1_4:72677564-72677583 | Msa0183700:five_prime_UTR | 30.0% | |
| ACAAAACAAGGAAAGAGTTA+GGG | + | chr1_4:72677565-72677584 | Msa0183700:five_prime_UTR | 30.0% | |
| TTATTCATTTCCCATTTGGA+TGG | - | chr1_4:72677610-72677629 | None:intergenic | 30.0% | |
| ! | GATTGATTTATTGGAAATGG+CGG | + | chr1_4:72677784-72677803 | Msa0183700:exon | 30.0% |
| ! | ATTGATTTATTGGAAATGGC+GGG | + | chr1_4:72677785-72677804 | Msa0183700:exon | 30.0% |
| ACACTGATACTATCATTAAC+AGG | - | chr1_4:72677902-72677921 | None:intergenic | 30.0% | |
| TGTGTATATGTTGGATTCAT+TGG | + | chr1_4:72678113-72678132 | Msa0183700:intron | 30.0% | |
| GATAATAAACAATCAAGTGG+TGG | - | chr1_4:72678358-72678377 | None:intergenic | 30.0% | |
| TTATGAGTATGCCAACAAAT+TGG | + | chr1_4:72678938-72678957 | Msa0183700:intron | 30.0% | |
| TTACATGGAATCCAATTTGT+TGG | - | chr1_4:72678952-72678971 | None:intergenic | 30.0% | |
| TGGATTCCATGTAATTGTAA+TGG | + | chr1_4:72678958-72678977 | Msa0183700:intron | 30.0% | |
| TAATTGTAATGGTTATTGGC+CGG | + | chr1_4:72678969-72678988 | Msa0183700:intron | 30.0% | |
| CATAAGTTTGAGCATAATGT+GGG | + | chr1_4:72679069-72679088 | Msa0183700:intron | 30.0% | |
| AGTTGCATGTTACAAGAAAT+AGG | + | chr1_4:72679190-72679209 | Msa0183700:intron | 30.0% | |
| TGTTACAAGAAATAGGTTTG+AGG | + | chr1_4:72679197-72679216 | Msa0183700:intron | 30.0% | |
| TAAGAAGAAAATTAGAGGGA+AGG | + | chr1_4:72679286-72679305 | Msa0183700:intron | 30.0% | |
| AAGAAGAAAATTAGAGGGAA+GGG | + | chr1_4:72679287-72679306 | Msa0183700:intron | 30.0% | |
| TTATCTCATTATCCAAACTC+AGG | + | chr1_4:72679332-72679351 | Msa0183700:intron | 30.0% | |
| TTCATGAATAAACTTTGACC+AGG | + | chr1_4:72679420-72679439 | Msa0183700:intron | 30.0% | |
| !! | ATATTGGCCTTGGATAATAA+AGG | + | chr1_4:72679491-72679510 | Msa0183700:intron | 30.0% |
| !! | TATTGGCCTTGGATAATAAA+GGG | + | chr1_4:72679492-72679511 | Msa0183700:intron | 30.0% |
| !!! | TACCATGTTTTTTACACAAG+AGG | - | chr1_4:72679588-72679607 | None:intergenic | 30.0% |
| CTTGTGTAAAAAACATGGTA+AGG | + | chr1_4:72679588-72679607 | Msa0183700:intron | 30.0% | |
| ! | ACTTGTCTTTTTATGAGTGT+TGG | - | chr1_4:72679820-72679839 | None:intergenic | 30.0% |
| ATTCAACACATCAGATTCTA+AGG | - | chr1_4:72680169-72680188 | None:intergenic | 30.0% | |
| ACTATAATAGATTGAATCGG+TGG | + | chr1_4:72680252-72680271 | Msa0183700:intron | 30.0% | |
| ! | ATTTGTTTCGGGTACATAAT+CGG | + | chr1_4:72680277-72680296 | Msa0183700:intron | 30.0% |
| !!! | TTCTTGTGGTTTTGTCTTTA+TGG | + | chr1_4:72680460-72680479 | Msa0183700:intron | 30.0% |
| ATCTAAACCGTGTATTAGAT+TGG | + | chr1_4:72680505-72680524 | Msa0183700:intron | 30.0% | |
| CTCAATTATGGCTACAAATA+CGG | - | chr1_4:72680591-72680610 | None:intergenic | 30.0% | |
| GTATTTGTAGCCATAATTGA+GGG | + | chr1_4:72680590-72680609 | Msa0183700:intron | 30.0% | |
| GTTGCATGTTTATTGTCTTA+TGG | + | chr1_4:72680732-72680751 | Msa0183700:intron | 30.0% | |
| CTACTGTAACTAAAACAACA+TGG | - | chr1_4:72680896-72680915 | None:intergenic | 30.0% | |
| !!! | TTGTTTTAGTTACAGTAGCA+TGG | + | chr1_4:72680898-72680917 | Msa0183700:intron | 30.0% |
| ATTGTTACTATATACAGGCA+AGG | + | chr1_4:72681161-72681180 | Msa0183700:intron | 30.0% | |
| TGATATTTATAGGAGGAGAA+TGG | + | chr1_4:72681310-72681329 | Msa0183700:intron | 30.0% | |
| TATGTGAAGCTCATATATTC+TGG | + | chr1_4:72681515-72681534 | Msa0183700:intron | 30.0% | |
| !! | TTGCCTTGTTATTCTCTAAT+AGG | + | chr1_4:72681588-72681607 | Msa0183700:intron | 30.0% |
| TTTGCTTCCTAATGTGTTAA+TGG | + | chr1_4:72681845-72681864 | Msa0183700:intron | 30.0% | |
| !! | TTTATTTCTAGGTTAGCTCT+CGG | + | chr1_4:72682031-72682050 | Msa0183700:intron | 30.0% |
| !!! | GAAAAGGTTTTAGGAAAAGA+GGG | - | chr1_4:72682260-72682279 | None:intergenic | 30.0% |
| !!! | TGAAAAGGTTTTAGGAAAAG+AGG | - | chr1_4:72682261-72682280 | None:intergenic | 30.0% |
| ! | ATTAAAAGCGCAGAATGAAA+AGG | - | chr1_4:72682276-72682295 | None:intergenic | 30.0% |
| TAGTAAGATGCTTGAAAGTA+GGG | - | chr1_4:72682309-72682328 | None:intergenic | 30.0% | |
| ATAGTAAGATGCTTGAAAGT+AGG | - | chr1_4:72682310-72682329 | None:intergenic | 30.0% | |
| TTTCTCATTTGAACCACAAT+AGG | + | chr1_4:72682498-72682517 | Msa0183700:intron | 30.0% | |
| GTGAAAAAGATGCAAAATCA+CGG | - | chr1_4:72682570-72682589 | None:intergenic | 30.0% | |
| CAACTATTCTATTTCACTTC+AGG | + | chr1_4:72682767-72682786 | Msa0183700:intron | 30.0% | |
| !! | GTTAAGTTTTGTCAATTGTC+TGG | + | chr1_4:72682891-72682910 | Msa0183700:intron | 30.0% |
| CGGATATTATAAAACACCAT+AGG | - | chr1_4:72682955-72682974 | None:intergenic | 30.0% | |
| TTAAACCTTTACTCCATAAC+TGG | + | chr1_4:72683260-72683279 | Msa0183700:intron | 30.0% | |
| ! | GGGTATTATATGCATTTTCA+GGG | - | chr1_4:72683298-72683317 | None:intergenic | 30.0% |
| ! | TGGGTATTATATGCATTTTC+AGG | - | chr1_4:72683299-72683318 | None:intergenic | 30.0% |
| ! | GTTTATATACACAGCTTGTT+TGG | + | chr1_4:72683329-72683348 | Msa0183700:intron | 30.0% |
| ACTAACACCTACAAATTCAT+AGG | + | chr1_4:72683394-72683413 | Msa0183700:intron | 30.0% | |
| AAGCAACTTCTGAATCAAAA+GGG | - | chr1_4:72683522-72683541 | None:intergenic | 30.0% | |
| AAAGCAACTTCTGAATCAAA+AGG | - | chr1_4:72683523-72683542 | None:intergenic | 30.0% | |
| !!! | AACAGGTGCTTTTTAAGTTT+TGG | + | chr1_4:72683572-72683591 | Msa0183700:intron | 30.0% |
| ! | TATTCCATCACAAAAGTACA+AGG | + | chr1_4:72683772-72683791 | Msa0183700:CDS | 30.0% |
| ! | ATTCCATCACAAAAGTACAA+GGG | + | chr1_4:72683773-72683792 | Msa0183700:CDS | 30.0% |
| ! | ATTTCCCATGTACCTTATTT+GGG | - | chr1_4:72683893-72683912 | None:intergenic | 30.0% |
| TATTTCCCATGTACCTTATT+TGG | - | chr1_4:72683894-72683913 | None:intergenic | 30.0% | |
| ATGAAGAATAGATCAACCAT+GGG | - | chr1_4:72683919-72683938 | None:intergenic | 30.0% | |
| AATGAAGAATAGATCAACCA+TGG | - | chr1_4:72683920-72683939 | None:intergenic | 30.0% | |
| TGGTTGATCTATTCTTCATT+AGG | + | chr1_4:72683920-72683939 | Msa0183700:three_prime_UTR | 30.0% | |
| AAAAACAGAAACTGTGAACT+TGG | - | chr1_4:72684041-72684060 | None:intergenic | 30.0% | |
| AGAAGAGAATCCATCCAAAT+GGG | + | chr1_4:72677597-72677616 | Msa0183700:five_prime_UTR | 35.0% | |
| ATACTTGATCACAGCAATGT+TGG | - | chr1_4:72677849-72677868 | None:intergenic | 35.0% | |
| ACATTGCTGTGATCAAGTAT+TGG | + | chr1_4:72677849-72677868 | Msa0183700:CDS | 35.0% | |
| CATTGCTGTGATCAAGTATT+GGG | + | chr1_4:72677850-72677869 | Msa0183700:CDS | 35.0% | |
| ! | ATTGCTGTGATCAAGTATTG+GGG | + | chr1_4:72677851-72677870 | Msa0183700:CDS | 35.0% |
| AAAGGAAGGACTAACAGAAA+CGG | - | chr1_4:72677960-72677979 | None:intergenic | 35.0% | |
| ATACGATCTTGTTGAAAGGA+AGG | - | chr1_4:72677974-72677993 | None:intergenic | 35.0% | |
| !! | ATGAAGCACTGAAACATACA+TGG | - | chr1_4:72678458-72678477 | None:intergenic | 35.0% |
| GTCTACTACTTGCTTGTTTA+TGG | + | chr1_4:72678495-72678514 | Msa0183700:intron | 35.0% | |
| ! | TTGGTGGAATTTCGTTTTGT+CGG | + | chr1_4:72678614-72678633 | Msa0183700:intron | 35.0% |
| GTGTAGGAAATTTCTCTTTC+CGG | + | chr1_4:72678640-72678659 | Msa0183700:intron | 35.0% | |
| TGTAGGAAATTTCTCTTTCC+GGG | + | chr1_4:72678641-72678660 | Msa0183700:intron | 35.0% | |
| AAGATTCCAGAGCTGTTTAA+GGG | + | chr1_4:72678666-72678685 | Msa0183700:CDS | 35.0% | |
| !! | AAAGGGTATTAAGATCACCA+AGG | + | chr1_4:72678726-72678745 | Msa0183700:CDS | 35.0% |
| GTGAAAGACTACACAAATAC+CGG | - | chr1_4:72678991-72679010 | None:intergenic | 35.0% | |
| AGATTTCGCAATTTGAGAAC+TGG | - | chr1_4:72679013-72679032 | None:intergenic | 35.0% | |
| CCACATTATGCTCAAACTTA+TGG | - | chr1_4:72679071-72679090 | None:intergenic | 35.0% | |
| CCATAAGTTTGAGCATAATG+TGG | + | chr1_4:72679068-72679087 | Msa0183700:intron | 35.0% | |
| TCAATGACAATCAGATTTGG+TGG | - | chr1_4:72679114-72679133 | None:intergenic | 35.0% | |
| TGCAACTTCAAATCTAATCC+AGG | - | chr1_4:72679177-72679196 | None:intergenic | 35.0% | |
| AGAAATAGGTTTGAGGATCT+TGG | + | chr1_4:72679204-72679223 | Msa0183700:intron | 35.0% | |
| ATCTTGGAATTGTTCGAAGT+AGG | + | chr1_4:72679220-72679239 | Msa0183700:intron | 35.0% | |
| TGATGTGCCATAATAGGATT+GGG | - | chr1_4:72679246-72679265 | None:intergenic | 35.0% | |
| CTTATCATTCTGTCTTAGTC+TGG | - | chr1_4:72679270-72679289 | None:intergenic | 35.0% | |
| CCACCAAGAAAACAAAATCA+CGG | + | chr1_4:72679444-72679463 | Msa0183700:intron | 35.0% | |
| CACCAAGAAAACAAAATCAC+GGG | + | chr1_4:72679445-72679464 | Msa0183700:intron | 35.0% | |
| GATAGATTTCCAGTGGATAT+TGG | + | chr1_4:72679475-72679494 | Msa0183700:intron | 35.0% | |
| !! | ATTGGCCTTGGATAATAAAG+GGG | + | chr1_4:72679493-72679512 | Msa0183700:intron | 35.0% |
| TAAAGTTGTTGTCATGTGAC+TGG | + | chr1_4:72679533-72679552 | Msa0183700:intron | 35.0% | |
| AGCCTCTTGTGTAAAAAACA+TGG | + | chr1_4:72679583-72679602 | Msa0183700:intron | 35.0% | |
| TCATCCGAGTCCAATAAAAA+GGG | - | chr1_4:72679688-72679707 | None:intergenic | 35.0% | |
| ATCATCCGAGTCCAATAAAA+AGG | - | chr1_4:72679689-72679708 | None:intergenic | 35.0% | |
| TATTGGACTCGGATGATAAT+TGG | + | chr1_4:72679692-72679711 | Msa0183700:intron | 35.0% | |
| AATACCATACAACGCAATTG+AGG | - | chr1_4:72679718-72679737 | None:intergenic | 35.0% | |
| CGTTGTATGGTATTTGTAGT+TGG | + | chr1_4:72679724-72679743 | Msa0183700:intron | 35.0% | |
| GATTATGTACCCGAAACAAA+TGG | - | chr1_4:72680278-72680297 | None:intergenic | 35.0% | |
| !!! | TTTGGCTTTTCACATTCTTG+TGG | + | chr1_4:72680446-72680465 | Msa0183700:intron | 35.0% |
| !!! | TTGTGGTTTTGTCTTTATGG+AGG | + | chr1_4:72680463-72680482 | Msa0183700:intron | 35.0% |
| AAACCGTGTATTAGATTGGA+TGG | + | chr1_4:72680509-72680528 | Msa0183700:intron | 35.0% | |
| CGTATTTGTAGCCATAATTG+AGG | + | chr1_4:72680589-72680608 | Msa0183700:intron | 35.0% | |
| AATACTTGGTCCCTCAATTA+TGG | - | chr1_4:72680603-72680622 | None:intergenic | 35.0% | |
| ! | CTTATGGTTTGGATTCATAG+AGG | + | chr1_4:72680748-72680767 | Msa0183700:intron | 35.0% |
| GGATTTGTGAAGTGGAAAAT+GGG | + | chr1_4:72681215-72681234 | Msa0183700:CDS | 35.0% | |
| !! | AACTTGCTGATGAAAAGCAT+TGG | + | chr1_4:72681353-72681372 | Msa0183700:CDS | 35.0% |
| !! | ACTTGCTGATGAAAAGCATT+GGG | + | chr1_4:72681354-72681373 | Msa0183700:CDS | 35.0% |
| AGAGCTTGAGAGAAAGAAAT+GGG | - | chr1_4:72681551-72681570 | None:intergenic | 35.0% | |
| AAGAGCTTGAGAGAAAGAAA+TGG | - | chr1_4:72681552-72681571 | None:intergenic | 35.0% | |
| !!! | CTCTCAAGCTCTTTTTAAGT+TGG | + | chr1_4:72681559-72681578 | Msa0183700:intron | 35.0% |
| TCGCCTATTAGAGAATAACA+AGG | - | chr1_4:72681594-72681613 | None:intergenic | 35.0% | |
| ! | TTGTTATTCTCTAATAGGCG+AGG | + | chr1_4:72681593-72681612 | Msa0183700:intron | 35.0% |
| CATTTGGCCATTAACACATT+AGG | - | chr1_4:72681855-72681874 | None:intergenic | 35.0% | |
| CTAATGTGTTAATGGCCAAA+TGG | + | chr1_4:72681853-72681872 | Msa0183700:intron | 35.0% | |
| TCCATTTCATCTAAGCACTA+TGG | + | chr1_4:72681952-72681971 | Msa0183700:intron | 35.0% | |
| TCCATAGTGCTTAGATGAAA+TGG | - | chr1_4:72681956-72681975 | None:intergenic | 35.0% | |
| TTGATACACAAATTGCACGA+AGG | - | chr1_4:72682147-72682166 | None:intergenic | 35.0% | |
| TTTGGCACTATTTCCTATTG+TGG | - | chr1_4:72682514-72682533 | None:intergenic | 35.0% | |
| AATAGGAAATAGTGCCAAAG+AGG | + | chr1_4:72682515-72682534 | Msa0183700:intron | 35.0% | |
| ! | TCCATTTTCAGTATCCTCTT+TGG | - | chr1_4:72682532-72682551 | None:intergenic | 35.0% |
| ACATGAATGATACATCCCAT+AGG | + | chr1_4:72682656-72682675 | Msa0183700:CDS | 35.0% | |
| AATTATCAGAGCCTACCTAT+GGG | - | chr1_4:72682674-72682693 | None:intergenic | 35.0% | |
| TAATCAGCATTGTTGACAAG+TGG | + | chr1_4:72682791-72682810 | Msa0183700:CDS | 35.0% | |
| ! | TCCACAGGTTTGAATTTTCT+TGG | + | chr1_4:72682831-72682850 | Msa0183700:intron | 35.0% |
| ACCAAGAAAATTCAAACCTG+TGG | - | chr1_4:72682835-72682854 | None:intergenic | 35.0% | |
| ATATATGTCTCGTATGCAGA+AGG | + | chr1_4:72682856-72682875 | Msa0183700:intron | 35.0% | |
| TATGCAGAAGGTTTATTCCT+GGG | + | chr1_4:72682868-72682887 | Msa0183700:intron | 35.0% | |
| AATTGACAAAACTTAACCCC+AGG | - | chr1_4:72682888-72682907 | None:intergenic | 35.0% | |
| CATATCAATGTTCACAGAAC+TGG | - | chr1_4:72683087-72683106 | None:intergenic | 35.0% | |
| GACATTACTGGCATTCAATT+CGG | - | chr1_4:72683118-72683137 | None:intergenic | 35.0% | |
| CACTTGATTGAAGACATTAC+TGG | - | chr1_4:72683130-72683149 | None:intergenic | 35.0% | |
| ATGTACTTCATCACATTAGC+TGG | - | chr1_4:72683160-72683179 | None:intergenic | 35.0% | |
| AAACTCCAGTTATGGAGTAA+AGG | - | chr1_4:72683268-72683287 | None:intergenic | 35.0% | |
| !! | ATATGCATTTTCAGGGACAT+AGG | - | chr1_4:72683291-72683310 | None:intergenic | 35.0% |
| TAGCTTATACGTTTGATGCA+GGG | + | chr1_4:72683456-72683475 | Msa0183700:CDS | 35.0% | |
| !! | AACTTAAAAAGCACCTGTTG+AGG | - | chr1_4:72683571-72683590 | None:intergenic | 35.0% |
| TCACCAATAATGTAACTGGA+GGG | - | chr1_4:72683671-72683690 | None:intergenic | 35.0% | |
| CTTGTCACCAATAATGTAAC+TGG | - | chr1_4:72683675-72683694 | None:intergenic | 35.0% | |
| AAGTCAATTGCAAAAGATGC+TGG | + | chr1_4:72683692-72683711 | Msa0183700:CDS | 35.0% | |
| AGTCAATTGCAAAAGATGCT+GGG | + | chr1_4:72683693-72683712 | Msa0183700:CDS | 35.0% | |
| ! | TTGTCTTTAATTTCTGGAGG+TGG | - | chr1_4:72683752-72683771 | None:intergenic | 35.0% |
| ! | TTCCATCACAAAAGTACAAG+GGG | + | chr1_4:72683774-72683793 | Msa0183700:CDS | 35.0% |
| CTCTTCTCAACAGTGAAAAT+GGG | + | chr1_4:72683864-72683883 | Msa0183700:CDS | 35.0% | |
| TTTCTTAGATGACCCTTTCA+AGG | + | chr1_4:72683976-72683995 | Msa0183700:three_prime_UTR | 35.0% | |
| AATTATGTCATGGGTACAAC+AGG | - | chr1_4:72684005-72684024 | None:intergenic | 35.0% | |
| TGCTCAATTCAATACAGGAA+AGG | - | chr1_4:72684135-72684154 | None:intergenic | 35.0% | |
| !! | AAAGGTGCTCAATTCAATAC+AGG | - | chr1_4:72684140-72684159 | None:intergenic | 35.0% |
| GCTCAGGCGAATTAAATTAA+AGG | - | chr1_4:72684158-72684177 | None:intergenic | 35.0% | |
| AACAAGGAAAGAGTTAGGGT+AGG | + | chr1_4:72677569-72677588 | Msa0183700:five_prime_UTR | 40.0% | |
| GAGAAGAGAATCCATCCAAA+TGG | + | chr1_4:72677596-72677615 | Msa0183700:five_prime_UTR | 40.0% | |
| CTGAGTAACAGATCTAAGTG+AGG | - | chr1_4:72677747-72677766 | None:intergenic | 40.0% | |
| TTGATCACAGCAATGTTGGT+TGG | - | chr1_4:72677845-72677864 | None:intergenic | 40.0% | |
| ACTAACAGAAACGGTAGTTG+TGG | - | chr1_4:72677951-72677970 | None:intergenic | 40.0% | |
| CCACATACGATCTTGTTGAA+AGG | - | chr1_4:72677978-72677997 | None:intergenic | 40.0% | |
| CCTTTCAACAAGATCGTATG+TGG | + | chr1_4:72677975-72677994 | Msa0183700:CDS | 40.0% | |
| ATGAAGCACAGACACATACA+CGG | - | chr1_4:72678323-72678342 | None:intergenic | 40.0% | |
| !! | TTCGTTTTGTCGGTTAGTGT+AGG | + | chr1_4:72678624-72678643 | Msa0183700:intron | 40.0% |
| GTAGGAAATTTCTCTTTCCG+GGG | + | chr1_4:72678642-72678661 | Msa0183700:intron | 40.0% | |
| TAGGAAATTTCTCTTTCCGG+GGG | + | chr1_4:72678643-72678662 | Msa0183700:intron | 40.0% | |
| GAAGATTCCAGAGCTGTTTA+AGG | + | chr1_4:72678665-72678684 | Msa0183700:CDS | 40.0% | |
| TTAAGATCACCAAGGAGGAT+TGG | + | chr1_4:72678734-72678753 | Msa0183700:CDS | 40.0% | |
| GATCTAAATCAAACAGGTCC+TGG | + | chr1_4:72679156-72679175 | Msa0183700:intron | 40.0% | |
| AAGTAGGCCCAATCCTATTA+TGG | + | chr1_4:72679236-72679255 | Msa0183700:intron | 40.0% | |
| CTGATGTGCCATAATAGGAT+TGG | - | chr1_4:72679247-72679266 | None:intergenic | 40.0% | |
| ! | TGAAGTCGATTTCCTGAGTT+TGG | - | chr1_4:72679347-72679366 | None:intergenic | 40.0% |
| !!! | TTTTGTTTTCTTGGTGGACC+TGG | - | chr1_4:72679441-72679460 | None:intergenic | 40.0% |
| !!! | CCGTGATTTTGTTTTCTTGG+TGG | - | chr1_4:72679447-72679466 | None:intergenic | 40.0% |
| !!! | TGCCCGTGATTTTGTTTTCT+TGG | - | chr1_4:72679450-72679469 | None:intergenic | 40.0% |
| !! | TTGGCCTTGGATAATAAAGG+GGG | + | chr1_4:72679494-72679513 | Msa0183700:intron | 40.0% |
| ACAACTTTACCTTTGCACCA+AGG | - | chr1_4:72679522-72679541 | None:intergenic | 40.0% | |
| !! | TTACACAAGAGGCTGTTTTC+AGG | - | chr1_4:72679577-72679596 | None:intergenic | 40.0% |
| GCGTACAATACACCAATTGA+CGG | + | chr1_4:72679613-72679632 | Msa0183700:intron | 40.0% | |
| CGTACAATACACCAATTGAC+GGG | + | chr1_4:72679614-72679633 | Msa0183700:intron | 40.0% | |
| TTCTATGACTGCAGCTAATC+TGG | - | chr1_4:72679752-72679771 | None:intergenic | 40.0% | |
| TGAATCCACAATGGTGAGAA+CGG | - | chr1_4:72679924-72679943 | None:intergenic | 40.0% | |
| CGCTACAATTGAATCCACAA+TGG | - | chr1_4:72679933-72679952 | None:intergenic | 40.0% | |
| GAAAGAAAGAATATCGACGG+CGG | - | chr1_4:72679970-72679989 | None:intergenic | 40.0% | |
| !! | AAAGAGAAGATTGGTGATGG+CGG | - | chr1_4:72680025-72680044 | None:intergenic | 40.0% |
| GAGAAAGAGAAGATTGGTGA+TGG | - | chr1_4:72680028-72680047 | None:intergenic | 40.0% | |
| GAGAGTGAGAAAGAGAAGAT+TGG | - | chr1_4:72680034-72680053 | None:intergenic | 40.0% | |
| ACTTCTGGTGTCTGGAAATT+TGG | + | chr1_4:72680428-72680447 | Msa0183700:intron | 40.0% | |
| CCACCATCCAATCTAATACA+CGG | - | chr1_4:72680515-72680534 | None:intergenic | 40.0% | |
| GATTCACTGCAGTTAGTGAA+AGG | - | chr1_4:72680563-72680582 | None:intergenic | 40.0% | |
| !! | TACATGGCGGAGTATTGAAT+TGG | - | chr1_4:72680679-72680698 | None:intergenic | 40.0% |
| CAGGAAAAACTTCTACATGG+CGG | - | chr1_4:72680692-72680711 | None:intergenic | 40.0% | |
| GTCCAGGAAAAACTTCTACA+TGG | - | chr1_4:72680695-72680714 | None:intergenic | 40.0% | |
| ATGAACAAATCTGTCTGTCC+AGG | - | chr1_4:72680711-72680730 | None:intergenic | 40.0% | |
| AGTTACAGTAGCATGGTTCT+TGG | + | chr1_4:72680905-72680924 | Msa0183700:intron | 40.0% | |
| ! | TGTTTTGCAGTTTATGCCCT+GGG | + | chr1_4:72680995-72681014 | Msa0183700:intron | 40.0% |
| ! | ACTTGCAAGGTGTTATGACT+TGG | + | chr1_4:72681094-72681113 | Msa0183700:intron | 40.0% |
| !! | CAAGGTGTTATGACTTGGTT+TGG | + | chr1_4:72681099-72681118 | Msa0183700:intron | 40.0% |
| ACTATATACAGGCAAGGATC+AGG | + | chr1_4:72681167-72681186 | Msa0183700:intron | 40.0% | |
| AGTGCTTGTCGTAGCTTATT+TGG | + | chr1_4:72681191-72681210 | Msa0183700:CDS | 40.0% | |
| GTGCTTGTCGTAGCTTATTT+GGG | + | chr1_4:72681192-72681211 | Msa0183700:CDS | 40.0% | |
| TGCTTGTCGTAGCTTATTTG+GGG | + | chr1_4:72681193-72681212 | Msa0183700:CDS | 40.0% | |
| TATTTGGGGGATTTGTGAAG+TGG | + | chr1_4:72681207-72681226 | Msa0183700:CDS | 40.0% | |
| GGGATTTGTGAAGTGGAAAA+TGG | + | chr1_4:72681214-72681233 | Msa0183700:CDS | 40.0% | |
| ! | GAATGGAAGTGATAGTCTTG+CGG | + | chr1_4:72681327-72681346 | Msa0183700:CDS | 40.0% |
| ! | GAGAGTCGACTTCAAATCAA+AGG | - | chr1_4:72681643-72681662 | None:intergenic | 40.0% |
| ! | GCTTTTACAGCATAGAGCAA+AGG | + | chr1_4:72682107-72682126 | Msa0183700:CDS | 40.0% |
| CACAAATTGCACGAAGGAAA+GGG | - | chr1_4:72682141-72682160 | None:intergenic | 40.0% | |
| ACACAAATTGCACGAAGGAA+AGG | - | chr1_4:72682142-72682161 | None:intergenic | 40.0% | |
| !!! | AGGTTTTAGGAAAAGAGGGA+GGG | - | chr1_4:72682256-72682275 | None:intergenic | 40.0% |
| !!! | AAGGTTTTAGGAAAAGAGGG+AGG | - | chr1_4:72682257-72682276 | None:intergenic | 40.0% |
| ! | GCGCAGAATGAAAAGGTTTT+AGG | - | chr1_4:72682269-72682288 | None:intergenic | 40.0% |
| TAAGATGCTTGAAAGTAGGG+AGG | - | chr1_4:72682306-72682325 | None:intergenic | 40.0% | |
| GCCAAAGAGGATACTGAAAA+TGG | + | chr1_4:72682528-72682547 | Msa0183700:CDS | 40.0% | |
| TGCAAAATCACGGTTTCGAA+TGG | - | chr1_4:72682560-72682579 | None:intergenic | 40.0% | |
| TGCATGAAACTGGTTGCTAT+CGG | - | chr1_4:72682605-72682624 | None:intergenic | 40.0% | |
| GAATGATACATCCCATAGGT+AGG | + | chr1_4:72682660-72682679 | Msa0183700:intron | 40.0% | |
| CAATTATCAGAGCCTACCTA+TGG | - | chr1_4:72682675-72682694 | None:intergenic | 40.0% | |
| GTATGCAGAAGGTTTATTCC+TGG | + | chr1_4:72682867-72682886 | Msa0183700:intron | 40.0% | |
| ATGCAGAAGGTTTATTCCTG+GGG | + | chr1_4:72682869-72682888 | Msa0183700:intron | 40.0% | |
| GACATAGGAAACTCCAGTTA+TGG | - | chr1_4:72683276-72683295 | None:intergenic | 40.0% | |
| !!! | AACTTCTAGTTTTGACGTGC+AGG | + | chr1_4:72683433-72683452 | Msa0183700:intron | 40.0% |
| GTAGCTTATACGTTTGATGC+AGG | + | chr1_4:72683455-72683474 | Msa0183700:CDS | 40.0% | |
| ! | CGGTTCTAATTGCACGTAAT+AGG | + | chr1_4:72683486-72683505 | Msa0183700:CDS | 40.0% |
| TGAGGTCATCTGAATTTGGA+GGG | - | chr1_4:72683553-72683572 | None:intergenic | 40.0% | |
| TTGAGGTCATCTGAATTTGG+AGG | - | chr1_4:72683554-72683573 | None:intergenic | 40.0% | |
| CTGTTGAGGTCATCTGAATT+TGG | - | chr1_4:72683557-72683576 | None:intergenic | 40.0% | |
| CAAATTCAGATGACCTCAAC+AGG | + | chr1_4:72683555-72683574 | Msa0183700:CDS | 40.0% | |
| CTTCCCTCCAGTTACATTAT+TGG | + | chr1_4:72683665-72683684 | Msa0183700:intron | 40.0% | |
| GTCACCAATAATGTAACTGG+AGG | - | chr1_4:72683672-72683691 | None:intergenic | 40.0% | |
| ! | TCTTTAATTTCTGGAGGTGG+TGG | - | chr1_4:72683749-72683768 | None:intergenic | 40.0% |
| ! | TCCATCACAAAAGTACAAGG+GGG | + | chr1_4:72683775-72683794 | Msa0183700:CDS | 40.0% |
| TACTTTATATGCACCAGACC+AGG | + | chr1_4:72683806-72683825 | Msa0183700:CDS | 40.0% | |
| CTTTCATCAGTAAGCACAAC+AGG | - | chr1_4:72683839-72683858 | None:intergenic | 40.0% | |
| GCTCTTCTCAACAGTGAAAA+TGG | + | chr1_4:72683863-72683882 | Msa0183700:CDS | 40.0% | |
| ! | GAAAATGGGCTTCCCAAATA+AGG | + | chr1_4:72683878-72683897 | Msa0183700:CDS | 40.0% |
| GCTTCCCAAATAAGGTACAT+GGG | + | chr1_4:72683886-72683905 | Msa0183700:exon | 40.0% | |
| GTACATGGGAAATATTCCCA+TGG | + | chr1_4:72683900-72683919 | Msa0183700:three_prime_UTR | 40.0% | |
| CTTCATTAGGCTTATCTGTC+CGG | + | chr1_4:72683933-72683952 | Msa0183700:three_prime_UTR | 40.0% | |
| TACAACAGGCTTCCTTGAAA+GGG | - | chr1_4:72683991-72684010 | None:intergenic | 40.0% | |
| AAGTTGAACTAGCAAAGCTC+AGG | - | chr1_4:72684174-72684193 | None:intergenic | 40.0% | |
| GAGGTCCCGTAAACAAAACA+AGG | + | chr1_4:72677553-72677572 | Msa0183700:five_prime_UTR | 45.0% | |
| AAGCAGCAGTAGAACGAAGA+AGG | + | chr1_4:72677637-72677656 | Msa0183700:five_prime_UTR | 45.0% | |
| AGCAGCAGTAGAACGAAGAA+GGG | + | chr1_4:72677638-72677657 | Msa0183700:five_prime_UTR | 45.0% | |
| AGTTGTGGTGCAAAGATGAG+CGG | - | chr1_4:72677936-72677955 | None:intergenic | 45.0% | |
| CAAGATCGTATGTGGCTCAA+TGG | + | chr1_4:72677983-72678002 | Msa0183700:CDS | 45.0% | |
| TCAGTGCTAGTGTTAGTGTC+TGG | + | chr1_4:72678155-72678174 | Msa0183700:intron | 45.0% | |
| CAGACACACAACACTAACAC+TGG | - | chr1_4:72678296-72678315 | None:intergenic | 45.0% | |
| CAGTGTTAGTGTTGTGTGTC+TGG | + | chr1_4:72678294-72678313 | Msa0183700:intron | 45.0% | |
| ATGTGTCTGTGCTTCATTGC+TGG | + | chr1_4:72678326-72678345 | Msa0183700:intron | 45.0% | |
| GTCAGTATTAGTGTCGTGTC+TGG | + | chr1_4:72678429-72678448 | Msa0183700:intron | 45.0% | |
| GGGTATTAAGATCACCAAGG+AGG | + | chr1_4:72678729-72678748 | Msa0183700:CDS | 45.0% | |
| ! | CAATTTGCTCCAATCCTCCT+TGG | - | chr1_4:72678746-72678765 | None:intergenic | 45.0% |
| ! | ATAATGTGGGCTGCATTGCA+TGG | + | chr1_4:72679082-72679101 | Msa0183700:intron | 45.0% |
| ! | TAATGTGGGCTGCATTGCAT+GGG | + | chr1_4:72679083-72679102 | Msa0183700:intron | 45.0% |
| TCTGGCTGATGTGCCATAAT+AGG | - | chr1_4:72679252-72679271 | None:intergenic | 45.0% | |
| CAGTGACGATAGATTTCCAG+TGG | + | chr1_4:72679468-72679487 | Msa0183700:intron | 45.0% | |
| ! | TTTCCAGTGGATATTGGCCT+TGG | + | chr1_4:72679481-72679500 | Msa0183700:intron | 45.0% |
| TATCCAAGGCCAATATCCAC+TGG | - | chr1_4:72679487-72679506 | None:intergenic | 45.0% | |
| ! | TGGCCTTGGATAATAAAGGG+GGG | + | chr1_4:72679495-72679514 | Msa0183700:intron | 45.0% |
| GTTGTTGTCATGTGACTGGA+AGG | + | chr1_4:72679537-72679556 | Msa0183700:intron | 45.0% | |
| ! | GCTGCCCTTTTTATTGGACT+CGG | + | chr1_4:72679681-72679700 | Msa0183700:intron | 45.0% |
| TTGGCCTCAATTGCGTTGTA+TGG | + | chr1_4:72679711-72679730 | Msa0183700:intron | 45.0% | |
| GTCTAACTGCAGTGACTGTA+GGG | - | chr1_4:72679775-72679794 | None:intergenic | 45.0% | |
| TGTCTAACTGCAGTGACTGT+AGG | - | chr1_4:72679776-72679795 | None:intergenic | 45.0% | |
| AATGGTGAGAACGGTGAAGA+AGG | - | chr1_4:72679915-72679934 | None:intergenic | 45.0% | |
| GAATCGGTGGCCATTTGTTT+CGG | + | chr1_4:72680265-72680284 | Msa0183700:intron | 45.0% | |
| AATCGGTGGCCATTTGTTTC+GGG | + | chr1_4:72680266-72680285 | Msa0183700:intron | 45.0% | |
| ! | TGTTTCGGGTACATAATCGG+TGG | + | chr1_4:72680280-72680299 | Msa0183700:intron | 45.0% |
| ATTTCCAGACACCAGAAGTC+TGG | - | chr1_4:72680427-72680446 | None:intergenic | 45.0% | |
| CCGTGTATTAGATTGGATGG+TGG | + | chr1_4:72680512-72680531 | Msa0183700:intron | 45.0% | |
| ! | CGCCATGTAGAAGTTTTTCC+TGG | + | chr1_4:72680690-72680709 | Msa0183700:intron | 45.0% |
| ! | CTGTTTTGCAGTTTATGCCC+TGG | + | chr1_4:72680994-72681013 | Msa0183700:intron | 45.0% |
| ! | GTTTTGCAGTTTATGCCCTG+GGG | + | chr1_4:72680996-72681015 | Msa0183700:intron | 45.0% |
| ! | GACATTCATTAGCTTCCCCA+GGG | - | chr1_4:72681014-72681033 | None:intergenic | 45.0% |
| ! | TGACATTCATTAGCTTCCCC+AGG | - | chr1_4:72681015-72681034 | None:intergenic | 45.0% |
| GCTTGTCGTAGCTTATTTGG+GGG | + | chr1_4:72681194-72681213 | Msa0183700:CDS | 45.0% | |
| ! | TTTGAAGTCGACTCTCTCAC+TGG | + | chr1_4:72681647-72681666 | Msa0183700:intron | 45.0% |
| AATCTAGCACAGCTGCCATT+TGG | - | chr1_4:72681871-72681890 | None:intergenic | 45.0% | |
| AACAGTATCACGCATTCCTG+AGG | - | chr1_4:72682076-72682095 | None:intergenic | 45.0% | |
| !!! | GTTTTAGGAAAAGAGGGAGG+GGG | - | chr1_4:72682254-72682273 | None:intergenic | 45.0% |
| !!! | GGTTTTAGGAAAAGAGGGAG+GGG | - | chr1_4:72682255-72682274 | None:intergenic | 45.0% |
| AAACTGGTTGCTATCGGTAC+AGG | - | chr1_4:72682599-72682618 | None:intergenic | 45.0% | |
| CCAGACAAACTGCATGAAAC+TGG | - | chr1_4:72682615-72682634 | None:intergenic | 45.0% | |
| CCAGTTTCATGCAGTTTGTC+TGG | + | chr1_4:72682612-72682631 | Msa0183700:CDS | 45.0% | |
| TCACAGAACTGGAGATCACA+TGG | - | chr1_4:72683076-72683095 | None:intergenic | 45.0% | |
| CGTGCAATTAGAACCGCATT+TGG | - | chr1_4:72683482-72683501 | None:intergenic | 45.0% | |
| GCAAAAGATGCTGGGATCAA+TGG | + | chr1_4:72683701-72683720 | Msa0183700:CDS | 45.0% | |
| TGCTGGGATCAATGGAATAG+AGG | + | chr1_4:72683709-72683728 | Msa0183700:CDS | 45.0% | |
| ! | TCCCCCTTGTACTTTTGTGA+TGG | - | chr1_4:72683779-72683798 | None:intergenic | 45.0% |
| TTATATGCACCAGACCAGGA+AGG | + | chr1_4:72683810-72683829 | Msa0183700:CDS | 45.0% | |
| TATATGCACCAGACCAGGAA+GGG | + | chr1_4:72683811-72683830 | Msa0183700:CDS | 45.0% | |
| GGCTTCCCAAATAAGGTACA+TGG | + | chr1_4:72683885-72683904 | Msa0183700:exon | 45.0% | |
| GTACAACAGGCTTCCTTGAA+AGG | - | chr1_4:72683992-72684011 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTCTATTATTATT+TGG | - | chr1_4:72677471-72677490 | None:intergenic | 5.0% |
| !! | TAATATATTTAAGTATTAAA+TGG | + | chr1_4:72681475-72681494 | Msa0183700:intron | 5.0% |
| GCAGCAGTAGAACGAAGAAG+GGG | + | chr1_4:72677639-72677658 | Msa0183700:five_prime_UTR | 50.0% | |
| !! | TGGAAATGGCGGGTGATAGT+TGG | + | chr1_4:72677795-72677814 | Msa0183700:exon | 50.0% |
| !! | GGAAATGGCGGGTGATAGTT+GGG | + | chr1_4:72677796-72677815 | Msa0183700:exon | 50.0% |
| !! | GGGTGATAGTTGGGTACTGA+TGG | + | chr1_4:72677805-72677824 | Msa0183700:CDS | 50.0% |
| GTTGTGGTGCAAAGATGAGC+GGG | - | chr1_4:72677935-72677954 | None:intergenic | 50.0% | |
| TCGTATGTGGCTCAATGGCA+AGG | + | chr1_4:72677988-72678007 | Msa0183700:CDS | 50.0% | |
| GCGCAGAGAGACATATTTCG+TGG | - | chr1_4:72678550-72678569 | None:intergenic | 50.0% | |
| GGATCTCCCTTAAACAGCTC+TGG | - | chr1_4:72678675-72678694 | None:intergenic | 50.0% | |
| TGCAGTGGGGAAGTTGTTGT+AGG | - | chr1_4:72678785-72678804 | None:intergenic | 50.0% | |
| !! | TGGATTGGCTTCATCAGCTG+CGG | + | chr1_4:72678807-72678826 | Msa0183700:CDS | 50.0% |
| GGCCTTGGATAATAAAGGGG+GGG | + | chr1_4:72679496-72679515 | Msa0183700:intron | 50.0% | |
| TCATGTGACTGGAAGGTCAC+AGG | + | chr1_4:72679544-72679563 | Msa0183700:intron | 50.0% | |
| CTAAAGCTCCCGCATAAGCA+GGG | - | chr1_4:72679653-72679672 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATAAGC+AGG | - | chr1_4:72679654-72679673 | None:intergenic | 50.0% | |
| ! | CACCAGGCTGCCCTTTTTAT+TGG | + | chr1_4:72679675-72679694 | Msa0183700:intron | 50.0% |
| GTCCAATAAAAAGGGCAGCC+TGG | - | chr1_4:72679680-72679699 | None:intergenic | 50.0% | |
| AGAAGGTCAGGGGAAAACGT+GGG | - | chr1_4:72679898-72679917 | None:intergenic | 50.0% | |
| AAGAAGGTCAGGGGAAAACG+TGG | - | chr1_4:72679899-72679918 | None:intergenic | 50.0% | |
| AGAACGGTGAAGAAGGTCAG+GGG | - | chr1_4:72679908-72679927 | None:intergenic | 50.0% | |
| GAGAACGGTGAAGAAGGTCA+GGG | - | chr1_4:72679909-72679928 | None:intergenic | 50.0% | |
| TGAGAACGGTGAAGAAGGTC+AGG | - | chr1_4:72679910-72679929 | None:intergenic | 50.0% | |
| CTTCACCGTTCTCACCATTG+TGG | + | chr1_4:72679916-72679935 | Msa0183700:intron | 50.0% | |
| GTGTAGCAGTTCCAGACTTC+TGG | + | chr1_4:72680413-72680432 | Msa0183700:intron | 50.0% | |
| AGTTCCAGACTTCTGGTGTC+TGG | + | chr1_4:72680420-72680439 | Msa0183700:intron | 50.0% | |
| ACCTTGCAATAGCAGACAGC+TGG | - | chr1_4:72681051-72681070 | None:intergenic | 50.0% | |
| ! | CTAGGTTAGCTCTCGGCAAA+AGG | + | chr1_4:72682038-72682057 | Msa0183700:intron | 50.0% |
| AAGGAAACTAGCAGCACCTC+AGG | + | chr1_4:72682057-72682076 | Msa0183700:CDS | 50.0% | |
| GCTTGAAAGTAGGGAGGTCT+TGG | - | chr1_4:72682300-72682319 | None:intergenic | 50.0% | |
| CCTGTGGAGCTTCTTCTGAA+CGG | - | chr1_4:72682819-72682838 | None:intergenic | 50.0% | |
| GTTTGATGCAGGGCCAAATG+CGG | + | chr1_4:72683466-72683485 | Msa0183700:CDS | 50.0% | |
| ! | TGGAGGGAAGAGAGTTTTGC+AGG | - | chr1_4:72683655-72683674 | None:intergenic | 50.0% |
| ATATGCACCAGACCAGGAAG+GGG | + | chr1_4:72683812-72683831 | Msa0183700:CDS | 50.0% | |
| !! | TAGCTTGCTCGTGCAACACG+AGG | - | chr1_4:72677408-72677427 | None:intergenic | 55.0% |
| !! | ACAGCTCTGGAATCTTCCCC+CGG | - | chr1_4:72678662-72678681 | None:intergenic | 55.0% |
| AACAACTTCCCCACTGCAGC+TGG | + | chr1_4:72678787-72678806 | Msa0183700:CDS | 55.0% | |
| AAGCCAATCCAGCTGCAGTG+GGG | - | chr1_4:72678798-72678817 | None:intergenic | 55.0% | |
| GAAGCCAATCCAGCTGCAGT+GGG | - | chr1_4:72678799-72678818 | None:intergenic | 55.0% | |
| TGAAGCCAATCCAGCTGCAG+TGG | - | chr1_4:72678800-72678819 | None:intergenic | 55.0% | |
| !! | GGATTGGCTTCATCAGCTGC+GGG | + | chr1_4:72678808-72678827 | Msa0183700:CDS | 55.0% |
| GGCCCCCCCTTTATTATCCA+AGG | - | chr1_4:72679501-72679520 | None:intergenic | 55.0% | |
| GGATAATAAAGGGGGGGCCT+TGG | + | chr1_4:72679502-72679521 | Msa0183700:intron | 55.0% | |
| CATAAGCAGGGTTCGGGAAG+GGG | - | chr1_4:72679641-72679660 | None:intergenic | 55.0% | |
| GCATAAGCAGGGTTCGGGAA+GGG | - | chr1_4:72679642-72679661 | None:intergenic | 55.0% | |
| CTTCCCGAACCCTGCTTATG+CGG | + | chr1_4:72679641-72679660 | Msa0183700:intron | 55.0% | |
| TTCCCGAACCCTGCTTATGC+GGG | + | chr1_4:72679642-72679661 | Msa0183700:intron | 55.0% | |
| AGCCAACGCCAGACAGATGA+CGG | - | chr1_4:72680069-72680088 | None:intergenic | 55.0% | |
| CTGGAACTGCTACACTGTGC+TGG | - | chr1_4:72680408-72680427 | None:intergenic | 55.0% | |
| GCCAGCTGTCTGCTATTGCA+AGG | + | chr1_4:72681047-72681066 | Msa0183700:CDS | 55.0% | |
| CGACTCTCTCACTGGAAGTG+CGG | + | chr1_4:72681655-72681674 | Msa0183700:intron | 55.0% | |
| CCGTTCAGAAGAAGCTCCAC+AGG | + | chr1_4:72682816-72682835 | Msa0183700:CDS | 55.0% | |
| CAACATCACACGCGCGAGCA+CGG | - | chr1_4:72678696-72678715 | None:intergenic | 60.0% | |
| TGCTCGCGCGTGTGATGTTG+AGG | + | chr1_4:72678696-72678715 | Msa0183700:CDS | 60.0% | |
| CTTCCCCACTGCAGCTGGAT+TGG | + | chr1_4:72678792-72678811 | Msa0183700:CDS | 60.0% | |
| GCTGCGGGTTTCGCTTGTCT+CGG | + | chr1_4:72678823-72678842 | Msa0183700:CDS | 60.0% | |
| CGCATAAGCAGGGTTCGGGA+AGG | - | chr1_4:72679643-72679662 | None:intergenic | 60.0% | |
| CTCCCGCATAAGCAGGGTTC+GGG | - | chr1_4:72679647-72679666 | None:intergenic | 60.0% | |
| GCTCCCGCATAAGCAGGGTT+CGG | - | chr1_4:72679648-72679667 | None:intergenic | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+AGG | + | chr1_4:72679659-72679678 | Msa0183700:intron | 60.0% |
| TCTCCCTGCCGTCATCTGTC+TGG | + | chr1_4:72680058-72680077 | Msa0183700:intron | 60.0% | |
| ! | ACGCCAGACAGATGACGGCA+GGG | - | chr1_4:72680064-72680083 | None:intergenic | 60.0% |
| ! | AACGCCAGACAGATGACGGC+AGG | - | chr1_4:72680065-72680084 | None:intergenic | 60.0% |
| TGCCGTCATCTGTCTGGCGT+TGG | + | chr1_4:72680064-72680083 | Msa0183700:intron | 60.0% | |
| !! | CATCTGTCTGGCGTTGGCTG+CGG | + | chr1_4:72680070-72680089 | Msa0183700:intron | 60.0% |
| AAAAGAGGGAGGGGGAGAGG+TGG | - | chr1_4:72682246-72682265 | None:intergenic | 60.0% | |
| AGGAAAAGAGGGAGGGGGAG+AGG | - | chr1_4:72682249-72682268 | None:intergenic | 60.0% | |
| AACAGGTCCCCTTCCTGGTC+TGG | - | chr1_4:72683822-72683841 | None:intergenic | 60.0% | |
| AGCACAACAGGTCCCCTTCC+TGG | - | chr1_4:72683827-72683846 | None:intergenic | 60.0% | |
| GTGCAACACGAGGCCACCGT+GGG | - | chr1_4:72677398-72677417 | None:intergenic | 65.0% | |
| ! | AAGGGGGGGCCTTGGTGCAA+AGG | + | chr1_4:72679510-72679529 | Msa0183700:intron | 65.0% |
| CGGGAAGGGGTCCCGTCAAT+TGG | - | chr1_4:72679628-72679647 | None:intergenic | 65.0% | |
| CGTGCAACACGAGGCCACCG+TGG | - | chr1_4:72677399-72677418 | None:intergenic | 70.0% | |
| !! | CTGGCGTTGGCTGCGGACAC+CGG | + | chr1_4:72680077-72680096 | Msa0183700:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 72677390 | 72684214 | 72677390 | ID=Msa0183700;Name=Msa0183700 |
| chr1_4 | mRNA | 72677390 | 72684214 | 72677390 | ID=Msa0183700-mRNA-1;Parent=Msa0183700;Name=Msa0183700-mRNA-1;_AED=0.06;_eAED=0.06;_QI=410|1|1|1|1|1|10|316|418 |
| chr1_4 | exon | 72677390 | 72678009 | 72677390 | ID=Msa0183700-mRNA-1:exon:24562;Parent=Msa0183700-mRNA-1 |
| chr1_4 | exon | 72678646 | 72678844 | 72678646 | ID=Msa0183700-mRNA-1:exon:24563;Parent=Msa0183700-mRNA-1 |
| chr1_4 | exon | 72681005 | 72681068 | 72681005 | ID=Msa0183700-mRNA-1:exon:24564;Parent=Msa0183700-mRNA-1 |
| chr1_4 | exon | 72681178 | 72681241 | 72681178 | ID=Msa0183700-mRNA-1:exon:24565;Parent=Msa0183700-mRNA-1 |
| chr1_4 | exon | 72681322 | 72681402 | 72681322 | ID=Msa0183700-mRNA-1:exon:24566;Parent=Msa0183700-mRNA-1 |
| chr1_4 | exon | 72682042 | 72682128 | 72682042 | ID=Msa0183700-mRNA-1:exon:24567;Parent=Msa0183700-mRNA-1 |
| chr1_4 | exon | 72682520 | 72682677 | 72682520 | ID=Msa0183700-mRNA-1:exon:24568;Parent=Msa0183700-mRNA-1 |
| chr1_4 | exon | 72682789 | 72682837 | 72682789 | ID=Msa0183700-mRNA-1:exon:24569;Parent=Msa0183700-mRNA-1 |
| chr1_4 | exon | 72683455 | 72683576 | 72683455 | ID=Msa0183700-mRNA-1:exon:24570;Parent=Msa0183700-mRNA-1 |
| chr1_4 | exon | 72683676 | 72684214 | 72683676 | ID=Msa0183700-mRNA-1:exon:24571;Parent=Msa0183700-mRNA-1 |
| chr1_4 | five_prime_UTR | 72677390 | 72677799 | 72677390 | ID=Msa0183700-mRNA-1:five_prime_utr;Parent=Msa0183700-mRNA-1 |
| chr1_4 | CDS | 72677800 | 72678009 | 72677800 | ID=Msa0183700-mRNA-1:cds;Parent=Msa0183700-mRNA-1 |
| chr1_4 | CDS | 72678646 | 72678844 | 72678646 | ID=Msa0183700-mRNA-1:cds;Parent=Msa0183700-mRNA-1 |
| chr1_4 | CDS | 72681005 | 72681068 | 72681005 | ID=Msa0183700-mRNA-1:cds;Parent=Msa0183700-mRNA-1 |
| chr1_4 | CDS | 72681178 | 72681241 | 72681178 | ID=Msa0183700-mRNA-1:cds;Parent=Msa0183700-mRNA-1 |
| chr1_4 | CDS | 72681322 | 72681402 | 72681322 | ID=Msa0183700-mRNA-1:cds;Parent=Msa0183700-mRNA-1 |
| chr1_4 | CDS | 72682042 | 72682128 | 72682042 | ID=Msa0183700-mRNA-1:cds;Parent=Msa0183700-mRNA-1 |
| chr1_4 | CDS | 72682520 | 72682677 | 72682520 | ID=Msa0183700-mRNA-1:cds;Parent=Msa0183700-mRNA-1 |
| chr1_4 | CDS | 72682789 | 72682837 | 72682789 | ID=Msa0183700-mRNA-1:cds;Parent=Msa0183700-mRNA-1 |
| chr1_4 | CDS | 72683455 | 72683576 | 72683455 | ID=Msa0183700-mRNA-1:cds;Parent=Msa0183700-mRNA-1 |
| chr1_4 | CDS | 72683676 | 72683898 | 72683676 | ID=Msa0183700-mRNA-1:cds;Parent=Msa0183700-mRNA-1 |
| chr1_4 | three_prime_UTR | 72683899 | 72684214 | 72683899 | ID=Msa0183700-mRNA-1:three_prime_utr;Parent=Msa0183700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
