Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044170 | sp|F4JCU3|MVD2_ARATH | 80.668 | 419 | 80 | 1 | 1 | 418 | 1 | 419 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044170 | Msa0046200 | 0.818447 | 1.951429e-52 | -8.615850e-47 |
| Msa0044170 | Msa0090850 | 0.984392 | 1.998620e-160 | -8.615850e-47 |
| Msa0044170 | Msa0183700 | 0.816592 | 5.108929e-52 | -8.615850e-47 |
| Msa0044170 | Msa0189720 | 0.833192 | 6.140768e-56 | -8.615850e-47 |
| Msa0044170 | Msa0199720 | 0.820375 | 7.091139e-53 | -8.615850e-47 |
| Msa0044170 | Msa0232100 | 0.824002 | 1.021693e-53 | -8.615850e-47 |
| Msa0044170 | Msa0280470 | 0.800437 | 1.442202e-48 | -8.615850e-47 |
| Msa0044170 | Msa0319690 | 0.835706 | 1.435145e-56 | -8.615850e-47 |
| Msa0044170 | Msa0371510 | 0.810629 | 1.048022e-50 | -8.615850e-47 |
| Msa0044170 | Msa0419730 | 0.802176 | 6.352554e-49 | -8.615850e-47 |
| Msa0044170 | Msa0437540 | 0.965605 | 8.013841e-125 | -8.615850e-47 |
| Msa0044170 | Msa0450030 | 0.805104 | 1.568130e-49 | -8.615850e-47 |
| Msa0044170 | Msa0487100 | 0.803483 | 3.412005e-49 | -8.615850e-47 |
| Msa0044170 | Msa0742090 | -0.806292 | 8.827820e-50 | -8.615850e-47 |
| Msa0044170 | Msa0807010 | 0.816511 | 5.325804e-52 | -8.615850e-47 |
| Msa0044170 | Msa0832940 | 0.807408 | 5.130149e-50 | -8.615850e-47 |
| Msa0044170 | Msa1179190 | 0.805245 | 1.465014e-49 | -8.615850e-47 |
| Msa0044170 | Msa1200500 | 0.885348 | 8.787635e-72 | -8.615850e-47 |
| Msa0044170 | Msa1206920 | 0.809461 | 1.870891e-50 | -8.615850e-47 |
| Msa0044170 | Msa1253520 | 0.836339 | 9.918618e-57 | -8.615850e-47 |
| Msa0044170 | Msa1255710 | 0.849292 | 3.550971e-60 | -8.615850e-47 |
| Msa0044170 | Msa1257200 | 0.817206 | 3.718393e-52 | -8.615850e-47 |
| Msa0044170 | Msa1293840 | 0.909542 | 5.076369e-82 | -8.615850e-47 |
| Msa0044170 | Msa1296860 | 0.821079 | 4.884779e-53 | -8.615850e-47 |
| Msa0044170 | Msa1363690 | 0.802119 | 6.525399e-49 | -8.615850e-47 |
| Msa0044170 | Msa1396550 | 0.805632 | 1.215602e-49 | -8.615850e-47 |
| Msa0044170 | Msa1460970 | 0.806818 | 6.837805e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044170 | MtrunA17_Chr1g0210791 | 98.325 | 418 | 7 | 0 | 1 | 418 | 1 | 418 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0044170 | AT3G54250.1 | 80.668 | 419 | 80 | 1 | 1 | 418 | 1 | 419 | 0.0 | 697 |
| Msa0044170 | AT2G38700.1 | 76.372 | 419 | 91 | 2 | 1 | 418 | 1 | 412 | 0.0 | 654 |
| Msa0044170 | AT3G54250.2 | 84.039 | 307 | 49 | 0 | 1 | 307 | 1 | 307 | 0.0 | 530 |
Find 162 sgRNAs with CRISPR-Local
Find 472 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCCCATGTACCTTATT+TGG | 0.031696 | 1_1:+75652259 | None:intergenic |
| TTCCTCTTTGATTGATTTAT+TGG | 0.066713 | 1_1:-75658383 | Msa0044170:five_prime_UTR |
| GCTCTTCTCAACAGTGAAAA+TGG | 0.180412 | 1_1:-75652287 | Msa0044170:CDS |
| CTTCCCTCCAGTTACATTAT+TGG | 0.191653 | 1_1:-75652485 | Msa0044170:intron |
| GGAATATTGTCTTTAATTTC+TGG | 0.195761 | 1_1:+75652395 | None:intergenic |
| GAAGATTCCAGAGCTGTTTA+AGG | 0.204279 | 1_1:-75657480 | Msa0044170:CDS |
| AGTGCTTGTCGTAGCTTATT+TGG | 0.220437 | 1_1:-75654957 | Msa0044170:CDS |
| GTGTAGGAAATTTCTCTTTC+CGG | 0.230107 | 1_1:-75657505 | Msa0044170:intron |
| GGGATTTGTGAAGTGGAAAA+TGG | 0.242630 | 1_1:-75654934 | Msa0044170:CDS |
| TGATGTTGAGGATAATAAAA+AGG | 0.260260 | 1_1:-75657437 | Msa0044170:CDS |
| GTGCTTGTCGTAGCTTATTT+GGG | 0.264802 | 1_1:-75654956 | Msa0044170:CDS |
| ACAAAACAAGGAAAGAGTTT+AGG | 0.283790 | 1_1:-75658605 | Msa0044170:five_prime_UTR |
| ATCATTAACAGGTAAGATTA+GGG | 0.303873 | 1_1:+75658270 | None:intergenic |
| CAAAACAAGGAAAGAGTTTA+GGG | 0.305394 | 1_1:-75658604 | Msa0044170:five_prime_UTR |
| GCTCAGGAGAATTAAATTAA+AGG | 0.305398 | 1_1:+75651995 | None:intergenic |
| TATCATTCATGTAAAATATA+GGG | 0.309352 | 1_1:+75653509 | None:intergenic |
| GCATGGTGATTTGATTTAAT+AGG | 0.311492 | 1_1:-75658639 | Msa0044170:five_prime_UTR |
| CGGTTCTAATTGCACGTAAT+AGG | 0.313651 | 1_1:-75652664 | Msa0044170:CDS |
| GCCAAAGAGGATACTGAAAA+TGG | 0.316786 | 1_1:-75653626 | Msa0044170:CDS |
| TGGTTGATCTATTCTTCATT+AGG | 0.316789 | 1_1:-75652230 | Msa0044170:three_prime_UTR |
| CTGTTGAGGTCATCTGAATT+TGG | 0.317231 | 1_1:+75652596 | None:intergenic |
| TATCATTAACAGGTAAGATT+AGG | 0.322166 | 1_1:+75658269 | None:intergenic |
| GTATCATTCATGTAAAATAT+AGG | 0.322715 | 1_1:+75653508 | None:intergenic |
| CATTGCTGTGATCAAGTATT+GGG | 0.327233 | 1_1:-75658308 | Msa0044170:CDS |
| AACAGGTCCCCTTCCTGGTC+TGG | 0.327487 | 1_1:+75652331 | None:intergenic |
| TATATATATTAGTTAGTAAT+GGG | 0.329149 | 1_1:+75658467 | None:intergenic |
| TTATTTATTCATTTCCCATT+TGG | 0.336742 | 1_1:+75658558 | None:intergenic |
| TGTAGGAAATTTCTCTTTCC+GGG | 0.344687 | 1_1:-75657504 | Msa0044170:intron |
| CCAGTTTCATGCAGTTTGTC+TGG | 0.349580 | 1_1:-75653542 | Msa0044170:CDS |
| GAAAATGGGCTTCCCAAATA+AGG | 0.349886 | 1_1:-75652272 | Msa0044170:exon |
| TTTGATTGATTTATTGGAAA+TGG | 0.357406 | 1_1:-75658377 | Msa0044170:exon |
| ATTTCCCATGTACCTTATTT+GGG | 0.363262 | 1_1:+75652260 | None:intergenic |
| TATTTCTATTATTATTTGGT+TGG | 0.373112 | 1_1:+75658709 | None:intergenic |
| CTTCATTAGGCTTATCTGTC+CGG | 0.383929 | 1_1:-75652217 | Msa0044170:three_prime_UTR |
| CTTCCCCACTGCAGCTGGAT+TGG | 0.391119 | 1_1:-75657353 | Msa0044170:CDS |
| TTCTTATTTACAAATCTAGT+TGG | 0.404598 | 1_1:-75652072 | Msa0044170:three_prime_UTR |
| GAGATTAAATTGAATTCGTT+CGG | 0.405752 | 1_1:+75658495 | None:intergenic |
| CAATTTGCTCCAATCCTCCT+TGG | 0.409304 | 1_1:+75657402 | None:intergenic |
| CCAGACAAACTGCATGAAAC+TGG | 0.411135 | 1_1:+75653542 | None:intergenic |
| AACAACTTCCCCACTGCAGC+TGG | 0.415060 | 1_1:-75657358 | Msa0044170:CDS |
| CGTGCAATTAGAACCGCGTT+TGG | 0.416780 | 1_1:+75652671 | None:intergenic |
| TGGAAATGGCGGGTGATAGT+TGG | 0.416905 | 1_1:-75658363 | Msa0044170:exon |
| AAAGCAACTTCTGAATCAAA+AGG | 0.417167 | 1_1:+75652630 | None:intergenic |
| AATCATGTCATGGGTACAAC+AGG | 0.421940 | 1_1:+75652148 | None:intergenic |
| GAGAAGAGAATCCATCCAAA+TGG | 0.429630 | 1_1:-75658573 | Msa0044170:five_prime_UTR |
| CTTTCATCAGTAAGCACAAC+AGG | 0.429825 | 1_1:+75652314 | None:intergenic |
| TTTCTTAGATGACCCTTTCA+AGG | 0.430043 | 1_1:-75652174 | Msa0044170:three_prime_UTR |
| AGCACAACAGGTCCCCTTCC+TGG | 0.433113 | 1_1:+75652326 | None:intergenic |
| CTAGGTTAGCTCTCGGCAAA+AGG | 0.434194 | 1_1:-75654111 | Msa0044170:intron |
| CAAATTCAGATGACCTCAAC+AGG | 0.435218 | 1_1:-75652595 | Msa0044170:intron |
| GCAAAAGATGCTGGGATCAA+TGG | 0.438234 | 1_1:-75652449 | Msa0044170:CDS |
| ACACTGATACTATCATTAAC+AGG | 0.448731 | 1_1:+75658259 | None:intergenic |
| AAGTCAATTGCAAAAGATGC+TGG | 0.449709 | 1_1:-75652458 | Msa0044170:CDS |
| CTCTTCTCAACAGTGAAAAT+GGG | 0.455253 | 1_1:-75652286 | Msa0044170:CDS |
| AAGATTCCAGAGCTGTTTAA+GGG | 0.458336 | 1_1:-75657479 | Msa0044170:CDS |
| GCTGCGGGTTTCGCTTGTCT+TGG | 0.462943 | 1_1:-75657322 | Msa0044170:intron |
| GGATTTGTGAAGTGGAAAAT+GGG | 0.468572 | 1_1:-75654933 | Msa0044170:CDS |
| TTATATATATTAGTTAGTAA+TGG | 0.470292 | 1_1:+75658466 | None:intergenic |
| TGACATTCATTAGCTTCCCC+AGG | 0.470709 | 1_1:+75655136 | None:intergenic |
| GGAAATGGCGGGTGATAGTT+GGG | 0.471328 | 1_1:-75658362 | Msa0044170:exon |
| CAAGATCGTATGTGGCTCAA+TGG | 0.475195 | 1_1:-75658175 | Msa0044170:CDS |
| GGATCTCCCTTAAACAGCTC+TGG | 0.477766 | 1_1:+75657473 | None:intergenic |
| ACATTGCTGTGATCAAGTAT+TGG | 0.482733 | 1_1:-75658309 | Msa0044170:CDS |
| GTAGCTTATACGTTTGATGC+AGG | 0.483477 | 1_1:-75652695 | Msa0044170:CDS |
| AAGGAAACTAGCAGCACCTC+AGG | 0.484840 | 1_1:-75654092 | Msa0044170:CDS |
| ACCTTGCAATAGCAGACAGC+TGG | 0.485298 | 1_1:+75655100 | None:intergenic |
| CCTTTCAACAAGATCGTATG+TGG | 0.485330 | 1_1:-75658183 | Msa0044170:CDS |
| TTGTCTTTAATTTCTGGAGG+TGG | 0.485942 | 1_1:+75652401 | None:intergenic |
| TTATTCATTTCCCATTTGGA+TGG | 0.486621 | 1_1:+75658562 | None:intergenic |
| TGATATTTATAGGAGGAGAA+TGG | 0.489664 | 1_1:-75654838 | Msa0044170:intron |
| TTAAGATCACCAAGGAGGAT+TGG | 0.489853 | 1_1:-75657411 | Msa0044170:CDS |
| GGCTTCCCAAATAAGGTACA+TGG | 0.490515 | 1_1:-75652265 | Msa0044170:exon |
| AACTTGCTGATGAAAAGCAT+TGG | 0.492166 | 1_1:-75654795 | Msa0044170:CDS |
| AAACTGGTTGCTATCGGTAC+AGG | 0.492574 | 1_1:+75653558 | None:intergenic |
| TCTTTAATTTCTGGAGGTGG+TGG | 0.493387 | 1_1:+75652404 | None:intergenic |
| ACTATATACAGGCAAGGATC+AGG | 0.494638 | 1_1:-75654981 | Msa0044170:intron |
| AAAGGTGCTCAATTCAATAC+AGG | 0.495352 | 1_1:+75652013 | None:intergenic |
| TGCAAAATCACGGTTTCGAA+TGG | 0.495401 | 1_1:+75653597 | None:intergenic |
| AGAAGAGAATCCATCCAAAT+GGG | 0.499644 | 1_1:-75658572 | Msa0044170:five_prime_UTR |
| GTACAACAGGCTTCCTTGAA+AGG | 0.505102 | 1_1:+75652161 | None:intergenic |
| AAGCAGCAGTAGAACGAAGA+AGG | 0.506291 | 1_1:-75658521 | Msa0044170:five_prime_UTR |
| TGCTGGGATCAATGGAATAG+AGG | 0.509843 | 1_1:-75652441 | Msa0044170:CDS |
| TGGATTGGCTTCATCAGCTG+CGG | 0.515526 | 1_1:-75657338 | Msa0044170:CDS |
| CCGTTCAGAAGAAGCTCCAC+AGG | 0.520575 | 1_1:-75653338 | Msa0044170:intron |
| TACTTTATATGCACCAGACC+AGG | 0.522597 | 1_1:-75652344 | Msa0044170:CDS |
| TGGTGATTTGATTTAATAGG+AGG | 0.523567 | 1_1:-75658636 | Msa0044170:five_prime_UTR |
| GAACACAAATAATCATGTCA+TGG | 0.523799 | 1_1:+75652138 | None:intergenic |
| ACTTGCTGATGAAAAGCATT+GGG | 0.525139 | 1_1:-75654794 | Msa0044170:CDS |
| TACAACAGGCTTCCTTGAAA+GGG | 0.527193 | 1_1:+75652162 | None:intergenic |
| TTGAGGTCATCTGAATTTGG+AGG | 0.527987 | 1_1:+75652599 | None:intergenic |
| AGCAGCAGTAGAACGAAGAA+GGG | 0.529653 | 1_1:-75658520 | Msa0044170:five_prime_UTR |
| TGCTTGTCGTAGCTTATTTG+GGG | 0.531557 | 1_1:-75654955 | Msa0044170:CDS |
| TGCAGTGGGGAAGTTGTTGT+AGG | 0.531785 | 1_1:+75657363 | None:intergenic |
| ACAGCTCTGGAATCTTCCCC+CGG | 0.536812 | 1_1:+75657486 | None:intergenic |
| GGATTGGCTTCATCAGCTGC+GGG | 0.537741 | 1_1:-75657337 | Msa0044170:CDS |
| ACTAACAGAAACGGTGGTAG+TGG | 0.541116 | 1_1:+75658210 | None:intergenic |
| TATTCCATCACAAAAGTACA+AGG | 0.548644 | 1_1:-75652378 | Msa0044170:CDS |
| AAGTTGAACTAGCAAAGCTC+AGG | 0.551576 | 1_1:+75651979 | None:intergenic |
| AAGCAACTTCTGAATCAAAA+GGG | 0.555123 | 1_1:+75652631 | None:intergenic |
| TTTATTTCTAGGTTAGCTCT+CGG | 0.556502 | 1_1:-75654118 | Msa0044170:intron |
| AACACAAATAATCATGTCAT+GGG | 0.557351 | 1_1:+75652139 | None:intergenic |
| ATCATTCATGTAAAATATAG+GGG | 0.557388 | 1_1:+75653510 | None:intergenic |
| TGCATGAAACTGGTTGCTAT+CGG | 0.559504 | 1_1:+75653552 | None:intergenic |
| TAGCTTATACGTTTGATGCA+GGG | 0.567321 | 1_1:-75652694 | Msa0044170:CDS |
| TGAAGCCAATCCAGCTGCAG+TGG | 0.570482 | 1_1:+75657348 | None:intergenic |
| AATGAAGAATAGATCAACCA+TGG | 0.572623 | 1_1:+75652233 | None:intergenic |
| TATATGCACCAGACCAGGAA+GGG | 0.575319 | 1_1:-75652339 | Msa0044170:CDS |
| GACATTCATTAGCTTCCCCA+GGG | 0.579343 | 1_1:+75655137 | None:intergenic |
| AATAGGAAATAGTGCCAAAG+AGG | 0.581666 | 1_1:-75653639 | Msa0044170:intron |
| ATATTGTCTTTAATTTCTGG+AGG | 0.581787 | 1_1:+75652398 | None:intergenic |
| TTCCAATAAATCAATCAAAG+AGG | 0.583411 | 1_1:+75658381 | None:intergenic |
| GAAGCCAATCCAGCTGCAGT+GGG | 0.584983 | 1_1:+75657349 | None:intergenic |
| TTCCATCACAAAAGTACAAG+GGG | 0.586717 | 1_1:-75652376 | Msa0044170:CDS |
| TAATCAGCATTGTTGACAAG+TGG | 0.588743 | 1_1:-75653363 | Msa0044170:CDS |
| TGCTCAATTCAATACAGGAA+AGG | 0.588746 | 1_1:+75652018 | None:intergenic |
| AGTCAATTGCAAAAGATGCT+GGG | 0.589588 | 1_1:-75652457 | Msa0044170:CDS |
| CAACATCACACGCGCGAGCA+CGG | 0.590089 | 1_1:+75657452 | None:intergenic |
| TGCTCGCGCGTGTGATGTTG+AGG | 0.590241 | 1_1:-75657449 | Msa0044170:CDS |
| CCTGTGGAGCTTCTTCTGAA+CGG | 0.591583 | 1_1:+75653338 | None:intergenic |
| ATACTTGATCACAGCAATGT+TGG | 0.591879 | 1_1:+75658312 | None:intergenic |
| ATTGATTTATTGGAAATGGC+GGG | 0.593123 | 1_1:-75658373 | Msa0044170:exon |
| ATACGATCTTGTTGAAAGGA+AGG | 0.593700 | 1_1:+75658187 | None:intergenic |
| ACTTGTTATTGTTATTGCTG+TGG | 0.594012 | 1_1:-75654767 | Msa0044170:intron |
| GGGTGATAGTTGGGTACTGA+TGG | 0.595158 | 1_1:-75658353 | Msa0044170:CDS |
| GTAGTGGTGCAAAGATGAGC+GGG | 0.598911 | 1_1:+75658226 | None:intergenic |
| TATGTTTATTGAATATTGCA+TGG | 0.600725 | 1_1:-75658656 | Msa0044170:five_prime_UTR |
| CCACATACGATCTTGTTGAA+AGG | 0.601733 | 1_1:+75658183 | None:intergenic |
| AACAGTATCACGCATTCCTG+AGG | 0.602816 | 1_1:+75654076 | None:intergenic |
| TCGTATGTGGCTCAATGGCA+AGG | 0.603313 | 1_1:-75658170 | Msa0044170:intron |
| TGAGGTCATCTGAATTTGGA+GGG | 0.603420 | 1_1:+75652600 | None:intergenic |
| GCCAGCTGTCTGCTATTGCA+AGG | 0.603691 | 1_1:-75655101 | Msa0044170:intron |
| AATTGAATTGAATTATGTAA+CGG | 0.606822 | 1_1:+75658747 | None:intergenic |
| GTGCAACACGAGGCCACCGT+GGG | 0.613401 | 1_1:+75658783 | None:intergenic |
| GCTTGTCGTAGCTTATTTGG+GGG | 0.616141 | 1_1:-75654954 | Msa0044170:CDS |
| ACAAGGAAAGAGTTTAGGGT+AGG | 0.617949 | 1_1:-75658600 | Msa0044170:five_prime_UTR |
| GTAGGAAATTTCTCTTTCCG+GGG | 0.619131 | 1_1:-75657503 | Msa0044170:intron |
| GATTGATTTATTGGAAATGG+CGG | 0.620199 | 1_1:-75658374 | Msa0044170:exon |
| AAAGGAAGGACTAACAGAAA+CGG | 0.623699 | 1_1:+75658201 | None:intergenic |
| ATATGCACCAGACCAGGAAG+GGG | 0.629282 | 1_1:-75652338 | Msa0044170:CDS |
| ATGAAGAATAGATCAACCAT+GGG | 0.632388 | 1_1:+75652234 | None:intergenic |
| GAGGTCCCGTAAACAAAACA+AGG | 0.633143 | 1_1:-75658617 | Msa0044170:five_prime_UTR |
| TTGATCACAGCAATGTTGGT+TGG | 0.639254 | 1_1:+75658316 | None:intergenic |
| ACATGAATGATACATCCCAT+AGG | 0.641400 | 1_1:-75653498 | Msa0044170:intron |
| ATTCCATCACAAAAGTACAA+GGG | 0.644199 | 1_1:-75652377 | Msa0044170:CDS |
| GCAGCAGTAGAACGAAGAAG+GGG | 0.655083 | 1_1:-75658519 | Msa0044170:five_prime_UTR |
| CTGAGTAACAGATCTAAGTG+AGG | 0.656597 | 1_1:+75658414 | None:intergenic |
| TCATTCATGTAAAATATAGG+GGG | 0.658384 | 1_1:+75653511 | None:intergenic |
| GGTAGTGGTGCAAAGATGAG+CGG | 0.659191 | 1_1:+75658225 | None:intergenic |
| GCTTCCCAAATAAGGTACAT+GGG | 0.661948 | 1_1:-75652264 | Msa0044170:exon |
| CGTGCAACACGAGGCCACCG+TGG | 0.662723 | 1_1:+75658782 | None:intergenic |
| GAATGGAAGTGATAGTCTTG+CGG | 0.663425 | 1_1:-75654821 | Msa0044170:CDS |
| TAGCTTGCTCGTGCAACACG+AGG | 0.663910 | 1_1:+75658773 | None:intergenic |
| ATTGCTGTGATCAAGTATTG+GGG | 0.675109 | 1_1:-75658307 | Msa0044170:CDS |
| GTACATGGGAAATATTCCCA+TGG | 0.678115 | 1_1:-75652250 | Msa0044170:three_prime_UTR |
| GTTTGATGCAGGGCCAAACG+CGG | 0.678166 | 1_1:-75652684 | Msa0044170:CDS |
| TTATATGCACCAGACCAGGA+AGG | 0.679375 | 1_1:-75652340 | Msa0044170:CDS |
| TAGGAAATTTCTCTTTCCGG+GGG | 0.687639 | 1_1:-75657502 | Msa0044170:CDS |
| GGGTATTAAGATCACCAAGG+AGG | 0.716838 | 1_1:-75657416 | Msa0044170:CDS |
| GGAAGGACTAACAGAAACGG+TGG | 0.719571 | 1_1:+75658204 | None:intergenic |
| AAAGGGTATTAAGATCACCA+AGG | 0.729322 | 1_1:-75657419 | Msa0044170:CDS |
| TCCATCACAAAAGTACAAGG+GGG | 0.737564 | 1_1:-75652375 | Msa0044170:CDS |
| AAGCCAATCCAGCTGCAGTG+GGG | 0.738884 | 1_1:+75657350 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATTAGTTAGTAAT+GGG | + | chr1_1:75652282-75652301 | None:intergenic | 10.0% |
| !! | TTATATATATTAGTTAGTAA+TGG | + | chr1_1:75652283-75652302 | None:intergenic | 10.0% |
| !!! | TTTAAATTTTCAATTCTTAA+TGG | - | chr1_1:75652645-75652664 | Msa0044170:CDS | 10.0% |
| !!! | TTAAATTTTCAATTCTTAAT+GGG | - | chr1_1:75652646-75652665 | Msa0044170:CDS | 10.0% |
| !!! | TTTTACTTTCAATTTTTAAT+TGG | - | chr1_1:75653196-75653215 | Msa0044170:intron | 10.0% |
| !! | ATAATTATCTAATAAAATTG+TGG | + | chr1_1:75654797-75654816 | None:intergenic | 10.0% |
| !! | CAAATAAATAAAAAATTATG+TGG | + | chr1_1:75656493-75656512 | None:intergenic | 10.0% |
| !! | CATATATAGTATATATTATA+CGG | - | chr1_1:75657953-75657972 | Msa0044170:intron | 10.0% |
| !! | AATTGAATTGAATTATGTAA+CGG | + | chr1_1:75652002-75652021 | None:intergenic | 15.0% |
| !!! | TATTTCTATTATTATTTGGT+TGG | + | chr1_1:75652040-75652059 | None:intergenic | 15.0% |
| !!! | CATTTTTTATATGTATTTGA+TGG | - | chr1_1:75652988-75653007 | Msa0044170:intron | 15.0% |
| !! | ATAACTATAATAGATTGAAT+CGG | - | chr1_1:75654847-75654866 | Msa0044170:intron | 15.0% |
| !!! | CTCAGATTTTTATTAATTAA+TGG | + | chr1_1:75654976-75654995 | None:intergenic | 15.0% |
| !! | CATTAATTAATAAAAATCTG+AGG | - | chr1_1:75654974-75654993 | Msa0044170:intron | 15.0% |
| !! | AGATTATTGAATAAAGAATA+AGG | + | chr1_1:75655373-75655392 | None:intergenic | 15.0% |
| !! | TTCTTTATTCAATAATCTTT+AGG | - | chr1_1:75655375-75655394 | Msa0044170:intron | 15.0% |
| !!! | TTACTATTACTTTTATATGA+GGG | - | chr1_1:75655526-75655545 | Msa0044170:intron | 15.0% |
| !!! | TATTTTATTTAAATCTCTGT+GGG | - | chr1_1:75655845-75655864 | Msa0044170:intron | 15.0% |
| !!! | TGTATTCTTTTGATATTTAT+AGG | - | chr1_1:75655898-75655917 | Msa0044170:intron | 15.0% |
| !!! | TTTCTTTAGAAATATACATT+GGG | + | chr1_1:75656809-75656828 | None:intergenic | 15.0% |
| !!! | ATTTCTTTAGAAATATACAT+TGG | + | chr1_1:75656810-75656829 | None:intergenic | 15.0% |
| !! | TTATATAAATAATTATGCCA+TGG | - | chr1_1:75657033-75657052 | Msa0044170:intron | 15.0% |
| !! | TATCATTCATGTAAAATATA+GGG | + | chr1_1:75657240-75657259 | None:intergenic | 15.0% |
| !! | TAATTCATTAGTTACTTATT+TGG | - | chr1_1:75657628-75657647 | Msa0044170:intron | 15.0% |
| !! | TTATTTGGAAAACAAATTAA+AGG | - | chr1_1:75657643-75657662 | Msa0044170:intron | 15.0% |
| !! | TATGTTTATTGAATATTGCA+TGG | - | chr1_1:75652090-75652109 | Msa0044170:three_prime_UTR | 20.0% |
| !! | TTATTTATTCATTTCCCATT+TGG | + | chr1_1:75652191-75652210 | None:intergenic | 20.0% |
| !!! | TTTGATTGATTTATTGGAAA+TGG | - | chr1_1:75652369-75652388 | Msa0044170:CDS | 20.0% |
| !! | AAGTTTAAAGAGAAAAAAGA+AGG | + | chr1_1:75652610-75652629 | None:intergenic | 20.0% |
| !! | GATAATAAACAATCAAGTAT+TGG | + | chr1_1:75652967-75652986 | None:intergenic | 20.0% |
| !!! | TACTTTCAATTTTTAATTGG+TGG | - | chr1_1:75653199-75653218 | Msa0044170:intron | 20.0% |
| !! | AATGATAAGAAGAAAATTAG+AGG | - | chr1_1:75653881-75653900 | Msa0044170:intron | 20.0% |
| !! | ATGATAAGAAGAAAATTAGA+GGG | - | chr1_1:75653882-75653901 | Msa0044170:intron | 20.0% |
| !! | AGAATAACCAAAATATTCAT+GGG | + | chr1_1:75653979-75653998 | None:intergenic | 20.0% |
| !! | TAGAATAACCAAAATATTCA+TGG | + | chr1_1:75653980-75653999 | None:intergenic | 20.0% |
| !! | GTTGAACTAATAAATGTTAT+TGG | - | chr1_1:75654471-75654490 | Msa0044170:intron | 20.0% |
| !! | CTTATTAATAACTCAATACT+TGG | + | chr1_1:75655215-75655234 | None:intergenic | 20.0% |
| !!! | ATGTTTATTGTCTTATGTTT+TGG | - | chr1_1:75655335-75655354 | Msa0044170:intron | 20.0% |
| !! | TTCAAACTTTATGTTCTTTA+AGG | - | chr1_1:75655406-75655425 | Msa0044170:intron | 20.0% |
| !!! | GTTACTATTACTTTTATATG+AGG | - | chr1_1:75655525-75655544 | Msa0044170:intron | 20.0% |
| !! | CTGTATATAGTAACAATATT+CGG | + | chr1_1:75655756-75655775 | None:intergenic | 20.0% |
| !!! | GTATTTTATTTAAATCTCTG+TGG | - | chr1_1:75655844-75655863 | Msa0044170:intron | 20.0% |
| !! | CAAAAGAATACAAATTACAA+TGG | + | chr1_1:75655890-75655909 | None:intergenic | 20.0% |
| !!! | ATTCTTTTGATATTTATAGG+AGG | - | chr1_1:75655901-75655920 | Msa0044170:intron | 20.0% |
| !! | TTTGTCTCTATTTAATTGAA+TGG | - | chr1_1:75656015-75656034 | Msa0044170:intron | 20.0% |
| !! | ATCATACCATAATACTAATT+TGG | - | chr1_1:75656395-75656414 | Msa0044170:intron | 20.0% |
| !! | ATATTGCCAAATTAGTATTA+TGG | + | chr1_1:75656404-75656423 | None:intergenic | 20.0% |
| !! | CTAGAAATAAATAATGAGAT+GGG | + | chr1_1:75656619-75656638 | None:intergenic | 20.0% |
| !! | AAAGTAATATTCATCTAACA+TGG | + | chr1_1:75656767-75656786 | None:intergenic | 20.0% |
| !!! | TAAAAGAATGAAAAGGTTTT+AGG | + | chr1_1:75656866-75656885 | None:intergenic | 20.0% |
| !! | TTGGTATTAAAAGAATGAAA+AGG | + | chr1_1:75656873-75656892 | None:intergenic | 20.0% |
| !! | TAATCAAACTTAAATTACCA+TGG | + | chr1_1:75657053-75657072 | None:intergenic | 20.0% |
| !! | ATCATTCATGTAAAATATAG+GGG | + | chr1_1:75657239-75657258 | None:intergenic | 20.0% |
| !! | GTATCATTCATGTAAAATAT+AGG | + | chr1_1:75657241-75657260 | None:intergenic | 20.0% |
| !! | AGATTTAGGAAAAAAACAAT+CGG | + | chr1_1:75657570-75657589 | None:intergenic | 20.0% |
| !!! | ATACTTGATAATAATATGAG+AGG | + | chr1_1:75657824-75657843 | None:intergenic | 20.0% |
| !! | TATATAAACATCATTCATGT+GGG | + | chr1_1:75657914-75657933 | None:intergenic | 20.0% |
| !!! | TTCTTATTTACAAATCTAGT+TGG | - | chr1_1:75658674-75658693 | Msa0044170:five_prime_UTR | 20.0% |
| ! | GAGATTAAATTGAATTCGTT+CGG | + | chr1_1:75652254-75652273 | None:intergenic | 25.0% |
| !! | TTCCTCTTTGATTGATTTAT+TGG | - | chr1_1:75652363-75652382 | Msa0044170:CDS | 25.0% |
| ! | TTCCAATAAATCAATCAAAG+AGG | + | chr1_1:75652368-75652387 | None:intergenic | 25.0% |
| ! | ATCATTAACAGGTAAGATTA+GGG | + | chr1_1:75652479-75652498 | None:intergenic | 25.0% |
| ! | TATCATTAACAGGTAAGATT+AGG | + | chr1_1:75652480-75652499 | None:intergenic | 25.0% |
| !!! | CACTTTTTATGTGTATTTGT+TGG | - | chr1_1:75652687-75652706 | Msa0044170:CDS | 25.0% |
| ! | ATGTAGTAATTTGAGAAAAC+TGG | + | chr1_1:75652881-75652900 | None:intergenic | 25.0% |
| ! | TGATGTTGAGGATAATAAAA+AGG | - | chr1_1:75653309-75653328 | Msa0044170:intron | 25.0% |
| ! | GATGTTGAGGATAATAAAAA+GGG | - | chr1_1:75653310-75653329 | Msa0044170:intron | 25.0% |
| ! | ATACTCATAACAATTACATG+TGG | + | chr1_1:75653528-75653547 | None:intergenic | 25.0% |
| ! | CAATAACCATTACAATTACA+TGG | + | chr1_1:75653567-75653586 | None:intergenic | 25.0% |
| ! | CATGTAATTGTAATGGTTAT+TGG | - | chr1_1:75653565-75653584 | Msa0044170:CDS | 25.0% |
| ! | TAATCAATGACAATCAGATT+TGG | + | chr1_1:75653717-75653736 | None:intergenic | 25.0% |
| !! | GTTTAAGATCTAAATCAAAC+AGG | - | chr1_1:75653750-75653769 | Msa0044170:intron | 25.0% |
| !! | AATTTTCCCCATGAATATTT+TGG | - | chr1_1:75653969-75653988 | Msa0044170:intron | 25.0% |
| ! | GAATAACCAAAATATTCATG+GGG | + | chr1_1:75653978-75653997 | None:intergenic | 25.0% |
| !!! | ATTCTAGAGCAAATATTGAA+AGG | - | chr1_1:75653994-75654013 | Msa0044170:intron | 25.0% |
| ! | TTATTAGTTCAACTATGTTG+TGG | + | chr1_1:75654464-75654483 | None:intergenic | 25.0% |
| ! | ATAGAAAGAAAGAATATCGA+CGG | + | chr1_1:75654573-75654592 | None:intergenic | 25.0% |
| !! | AAACTTTATGTTCTTTAAGG+CGG | - | chr1_1:75655409-75655428 | Msa0044170:intron | 25.0% |
| ! | ACTAAAACAACATGGAAATT+AGG | + | chr1_1:75655486-75655505 | None:intergenic | 25.0% |
| ! | TTTATATGAGGGTTTATACT+AGG | - | chr1_1:75655537-75655556 | Msa0044170:intron | 25.0% |
| ! | TTTATGACTTTAAACTTGCA+AGG | - | chr1_1:75655679-75655698 | Msa0044170:intron | 25.0% |
| ! | CGAATATTGTTACTATATAC+AGG | - | chr1_1:75655754-75655773 | Msa0044170:intron | 25.0% |
| ! | AAGTATTAAATGGTATGTTG+TGG | - | chr1_1:75656083-75656102 | Msa0044170:intron | 25.0% |
| ! | ATACTAATTTGGCAATATTG+TGG | - | chr1_1:75656406-75656425 | Msa0044170:intron | 25.0% |
| ! | CAAGATAAAAAATACTGCTT+GGG | + | chr1_1:75656516-75656535 | None:intergenic | 25.0% |
| ! | ACAAGATAAAAAATACTGCT+TGG | + | chr1_1:75656517-75656536 | None:intergenic | 25.0% |
| ! | CCTAGAAATAAATAATGAGA+TGG | + | chr1_1:75656620-75656639 | None:intergenic | 25.0% |
| !! | CCATCTCATTATTTATTTCT+AGG | - | chr1_1:75656617-75656636 | Msa0044170:intron | 25.0% |
| ! | CATCTTACTATTGTTAACAT+TGG | - | chr1_1:75656911-75656930 | Msa0044170:intron | 25.0% |
| ! | TACTATTTGAGAGAGAAAAA+TGG | + | chr1_1:75656947-75656966 | None:intergenic | 25.0% |
| ! | AGTAAGCATGAATTTAAACA+CGG | - | chr1_1:75656963-75656982 | Msa0044170:intron | 25.0% |
| ! | TCATTCATGTAAAATATAGG+GGG | + | chr1_1:75657238-75657257 | None:intergenic | 25.0% |
| !! | GTTAAATTTTGTCAATTGTC+TGG | - | chr1_1:75657486-75657505 | Msa0044170:CDS | 25.0% |
| !!! | GTTTTAGAATATTGAGTGAT+TGG | + | chr1_1:75657515-75657534 | None:intergenic | 25.0% |
| ! | AAACTAAAAGAAACTTCCTA+TGG | - | chr1_1:75657531-75657550 | Msa0044170:intron | 25.0% |
| ! | GAACTTAGTATGAAAGATTT+AGG | + | chr1_1:75657584-75657603 | None:intergenic | 25.0% |
| ! | TGAATTACTTCTGATGTAAA+AGG | + | chr1_1:75657615-75657634 | None:intergenic | 25.0% |
| ! | TTTGGAAAACAAATTAAAGG+AGG | - | chr1_1:75657646-75657665 | Msa0044170:intron | 25.0% |
| ! | GTATATAAACATCATTCATG+TGG | + | chr1_1:75657915-75657934 | None:intergenic | 25.0% |
| ! | ATAGAAACCTATGAATTTGT+AGG | + | chr1_1:75658000-75658019 | None:intergenic | 25.0% |
| !! | ATATTGTCTTTAATTTCTGG+AGG | + | chr1_1:75658351-75658370 | None:intergenic | 25.0% |
| !! | GGAATATTGTCTTTAATTTC+TGG | + | chr1_1:75658354-75658373 | None:intergenic | 25.0% |
| !!! | ATATTTTGAGCTAATATAGC+CGG | + | chr1_1:75658551-75658570 | None:intergenic | 25.0% |
| ! | AACACAAATAATCATGTCAT+GGG | + | chr1_1:75658610-75658629 | None:intergenic | 25.0% |
| ! | GCATGGTGATTTGATTTAAT+AGG | - | chr1_1:75652107-75652126 | Msa0044170:three_prime_UTR | 30.0% |
| ! | TGGTGATTTGATTTAATAGG+AGG | - | chr1_1:75652110-75652129 | Msa0044170:three_prime_UTR | 30.0% |
| !!! | TCTTTCCTTGTTTTGTTTAC+GGG | + | chr1_1:75652137-75652156 | None:intergenic | 30.0% |
| !!! | CTCTTTCCTTGTTTTGTTTA+CGG | + | chr1_1:75652138-75652157 | None:intergenic | 30.0% |
| ACAAAACAAGGAAAGAGTTT+AGG | - | chr1_1:75652141-75652160 | Msa0044170:three_prime_UTR | 30.0% | |
| CAAAACAAGGAAAGAGTTTA+GGG | - | chr1_1:75652142-75652161 | Msa0044170:three_prime_UTR | 30.0% | |
| TTATTCATTTCCCATTTGGA+TGG | + | chr1_1:75652187-75652206 | None:intergenic | 30.0% | |
| ! | GATTGATTTATTGGAAATGG+CGG | - | chr1_1:75652372-75652391 | Msa0044170:CDS | 30.0% |
| ! | ATTGATTTATTGGAAATGGC+GGG | - | chr1_1:75652373-75652392 | Msa0044170:CDS | 30.0% |
| ACACTGATACTATCATTAAC+AGG | + | chr1_1:75652490-75652509 | None:intergenic | 30.0% | |
| ! | TGTGTATTTGTTGGATTCAT+TGG | - | chr1_1:75652696-75652715 | Msa0044170:CDS | 30.0% |
| ! | TGAGTTTTTCTCGAATTCAT+TGG | - | chr1_1:75652800-75652819 | Msa0044170:intron | 30.0% |
| TTATGAGTATGCCAACAAAT+TGG | - | chr1_1:75653538-75653557 | Msa0044170:CDS | 30.0% | |
| TTACATGGAATCCAATTTGT+TGG | + | chr1_1:75653552-75653571 | None:intergenic | 30.0% | |
| TGGATTCCATGTAATTGTAA+TGG | - | chr1_1:75653558-75653577 | Msa0044170:CDS | 30.0% | |
| TAATTGTAATGGTTATTGGC+CGG | - | chr1_1:75653569-75653588 | Msa0044170:CDS | 30.0% | |
| CATAAGTTTGAGCATAATGT+GGG | - | chr1_1:75653669-75653688 | Msa0044170:intron | 30.0% | |
| AGTTGCATGTTACAAGAAAT+AGG | - | chr1_1:75653790-75653809 | Msa0044170:intron | 30.0% | |
| TGTTACAAGAAATAGGTTTG+AGG | - | chr1_1:75653797-75653816 | Msa0044170:intron | 30.0% | |
| TAAGAAGAAAATTAGAGGGA+AGG | - | chr1_1:75653886-75653905 | Msa0044170:intron | 30.0% | |
| AAGAAGAAAATTAGAGGGAA+GGG | - | chr1_1:75653887-75653906 | Msa0044170:intron | 30.0% | |
| TTATCTCATTATCCAAACTC+AGG | - | chr1_1:75653932-75653951 | Msa0044170:intron | 30.0% | |
| TTCATGAATAAACTTTGACC+AGG | - | chr1_1:75654020-75654039 | Msa0044170:intron | 30.0% | |
| !! | ATATTGGCCTTGGATAATAA+AGG | - | chr1_1:75654091-75654110 | Msa0044170:CDS | 30.0% |
| !! | TATTGGCCTTGGATAATAAA+GGG | - | chr1_1:75654092-75654111 | Msa0044170:CDS | 30.0% |
| CTTGTGTAAAAAACATGGTA+AGG | - | chr1_1:75654188-75654207 | Msa0044170:intron | 30.0% | |
| ! | ACTTGTCTTTTTATGAGTGT+TGG | + | chr1_1:75654420-75654439 | None:intergenic | 30.0% |
| ATTCAACACATCAGATTCTA+AGG | + | chr1_1:75654767-75654786 | None:intergenic | 30.0% | |
| ACTATAATAGATTGAATCGG+TGG | - | chr1_1:75654850-75654869 | Msa0044170:intron | 30.0% | |
| ! | ATTTGTTTCGGGTACATAAT+CGG | - | chr1_1:75654875-75654894 | Msa0044170:intron | 30.0% |
| !!! | TTCTTGTGGTTTTGTCTTTA+TGG | - | chr1_1:75655058-75655077 | Msa0044170:intron | 30.0% |
| ATCTAAACCGTGTATTAGAT+TGG | - | chr1_1:75655103-75655122 | Msa0044170:CDS | 30.0% | |
| CTCAATTATGGCTACAAATA+CGG | + | chr1_1:75655189-75655208 | None:intergenic | 30.0% | |
| GTATTTGTAGCCATAATTGA+GGG | - | chr1_1:75655188-75655207 | Msa0044170:intron | 30.0% | |
| !! | CTTATGTTTTGGATTCATAG+AGG | - | chr1_1:75655346-75655365 | Msa0044170:intron | 30.0% |
| CTACTGTAACTAAAACAACA+TGG | + | chr1_1:75655494-75655513 | None:intergenic | 30.0% | |
| !!! | TTGTTTTAGTTACAGTAGCA+TGG | - | chr1_1:75655496-75655515 | Msa0044170:intron | 30.0% |
| ATTGTTACTATATACAGGCA+AGG | - | chr1_1:75655759-75655778 | Msa0044170:intron | 30.0% | |
| TGATATTTATAGGAGGAGAA+TGG | - | chr1_1:75655908-75655927 | Msa0044170:intron | 30.0% | |
| !! | ACTTGTTATTGTTATTGCTG+TGG | - | chr1_1:75655979-75655998 | Msa0044170:intron | 30.0% |
| TATGTGAAGCTCATATATTC+TGG | - | chr1_1:75656113-75656132 | Msa0044170:intron | 30.0% | |
| !! | TTGCCTTGTTATTCTCTAAT+AGG | - | chr1_1:75656186-75656205 | Msa0044170:intron | 30.0% |
| TTTGCTTCCTAATGTGTTAA+TGG | - | chr1_1:75656443-75656462 | Msa0044170:intron | 30.0% | |
| !! | TTTATTTCTAGGTTAGCTCT+CGG | - | chr1_1:75656628-75656647 | Msa0044170:intron | 30.0% |
| !!! | GAAAAGGTTTTAGGAAAAGA+GGG | + | chr1_1:75656857-75656876 | None:intergenic | 30.0% |
| !!! | TGAAAAGGTTTTAGGAAAAG+AGG | + | chr1_1:75656858-75656877 | None:intergenic | 30.0% |
| TAGTAAGATGCTTGAAAGTA+GGG | + | chr1_1:75656901-75656920 | None:intergenic | 30.0% | |
| ATAGTAAGATGCTTGAAAGT+AGG | + | chr1_1:75656902-75656921 | None:intergenic | 30.0% | |
| TTTCTCATTTGAACCACAAT+AGG | - | chr1_1:75657090-75657109 | Msa0044170:intron | 30.0% | |
| GTGAAAAAGATGCAAAATCA+CGG | + | chr1_1:75657162-75657181 | None:intergenic | 30.0% | |
| CAACTATTCTATTTCACTTC+AGG | - | chr1_1:75657359-75657378 | Msa0044170:CDS | 30.0% | |
| AAGAAAGTAATTCAAACCTG+TGG | + | chr1_1:75657427-75657446 | None:intergenic | 30.0% | |
| ACAGGTTTGAATTACTTTCT+TGG | - | chr1_1:75657426-75657445 | Msa0044170:CDS | 30.0% | |
| AATTGACAAAATTTAACCCC+AGG | + | chr1_1:75657483-75657502 | None:intergenic | 30.0% | |
| CGGATATTATAAAACACCAT+AGG | + | chr1_1:75657550-75657569 | None:intergenic | 30.0% | |
| TTAAACCTTTACTCCATAAC+TGG | - | chr1_1:75657856-75657875 | Msa0044170:intron | 30.0% | |
| ! | GGGTATTATATGCATTTTCA+GGG | + | chr1_1:75657894-75657913 | None:intergenic | 30.0% |
| ! | TGGGTATTATATGCATTTTC+AGG | + | chr1_1:75657895-75657914 | None:intergenic | 30.0% |
| ! | GTTTATATACACAGCTTGTT+TGG | - | chr1_1:75657925-75657944 | Msa0044170:intron | 30.0% |
| ACTAACACCTACAAATTCAT+AGG | - | chr1_1:75657990-75658009 | Msa0044170:intron | 30.0% | |
| AAGCAACTTCTGAATCAAAA+GGG | + | chr1_1:75658118-75658137 | None:intergenic | 30.0% | |
| AAAGCAACTTCTGAATCAAA+AGG | + | chr1_1:75658119-75658138 | None:intergenic | 30.0% | |
| !!! | AACAGGTGCTTTTTAAGTTT+TGG | - | chr1_1:75658168-75658187 | Msa0044170:intron | 30.0% |
| ! | TATTCCATCACAAAAGTACA+AGG | - | chr1_1:75658368-75658387 | Msa0044170:exon | 30.0% |
| ! | ATTCCATCACAAAAGTACAA+GGG | - | chr1_1:75658369-75658388 | Msa0044170:exon | 30.0% |
| ! | ATTTCCCATGTACCTTATTT+GGG | + | chr1_1:75658489-75658508 | None:intergenic | 30.0% |
| TATTTCCCATGTACCTTATT+TGG | + | chr1_1:75658490-75658509 | None:intergenic | 30.0% | |
| ATGAAGAATAGATCAACCAT+GGG | + | chr1_1:75658515-75658534 | None:intergenic | 30.0% | |
| AATGAAGAATAGATCAACCA+TGG | + | chr1_1:75658516-75658535 | None:intergenic | 30.0% | |
| TGGTTGATCTATTCTTCATT+AGG | - | chr1_1:75658516-75658535 | Msa0044170:five_prime_UTR | 30.0% | |
| GAACACAAATAATCATGTCA+TGG | + | chr1_1:75658611-75658630 | None:intergenic | 30.0% | |
| AAAAACAGAAACTGTGAACT+TGG | + | chr1_1:75658637-75658656 | None:intergenic | 30.0% | |
| GCTCAGGAGAATTAAATTAA+AGG | + | chr1_1:75658754-75658773 | None:intergenic | 30.0% | |
| AGAAGAGAATCCATCCAAAT+GGG | - | chr1_1:75652174-75652193 | Msa0044170:three_prime_UTR | 35.0% | |
| ATACTTGATCACAGCAATGT+TGG | + | chr1_1:75652437-75652456 | None:intergenic | 35.0% | |
| ACATTGCTGTGATCAAGTAT+TGG | - | chr1_1:75652437-75652456 | Msa0044170:CDS | 35.0% | |
| CATTGCTGTGATCAAGTATT+GGG | - | chr1_1:75652438-75652457 | Msa0044170:CDS | 35.0% | |
| ! | ATTGCTGTGATCAAGTATTG+GGG | - | chr1_1:75652439-75652458 | Msa0044170:CDS | 35.0% |
| AAAGGAAGGACTAACAGAAA+CGG | + | chr1_1:75652548-75652567 | None:intergenic | 35.0% | |
| ATACGATCTTGTTGAAAGGA+AGG | + | chr1_1:75652562-75652581 | None:intergenic | 35.0% | |
| !! | AACAAGCACTGACAAATACA+CGG | + | chr1_1:75652778-75652797 | None:intergenic | 35.0% |
| !! | ATGAAGCACTGAAACATACA+TGG | + | chr1_1:75653067-75653086 | None:intergenic | 35.0% |
| GTCTACTACTTGCTTGTTTA+TGG | - | chr1_1:75653096-75653115 | Msa0044170:intron | 35.0% | |
| ! | TTGGTGGAATTTCGTTTTGT+CGG | - | chr1_1:75653215-75653234 | Msa0044170:intron | 35.0% |
| GTGTAGGAAATTTCTCTTTC+CGG | - | chr1_1:75653241-75653260 | Msa0044170:intron | 35.0% | |
| TGTAGGAAATTTCTCTTTCC+GGG | - | chr1_1:75653242-75653261 | Msa0044170:intron | 35.0% | |
| AAGATTCCAGAGCTGTTTAA+GGG | - | chr1_1:75653267-75653286 | Msa0044170:intron | 35.0% | |
| !! | AAAGGGTATTAAGATCACCA+AGG | - | chr1_1:75653327-75653346 | Msa0044170:intron | 35.0% |
| GTGAAAGACTACACAAATAC+CGG | + | chr1_1:75653591-75653610 | None:intergenic | 35.0% | |
| AGATTTCGCAATTTGAGAAC+TGG | + | chr1_1:75653613-75653632 | None:intergenic | 35.0% | |
| CCACATTATGCTCAAACTTA+TGG | + | chr1_1:75653671-75653690 | None:intergenic | 35.0% | |
| CCATAAGTTTGAGCATAATG+TGG | - | chr1_1:75653668-75653687 | Msa0044170:intron | 35.0% | |
| TCAATGACAATCAGATTTGG+TGG | + | chr1_1:75653714-75653733 | None:intergenic | 35.0% | |
| TGCAACTTCAAATCTAATCC+AGG | + | chr1_1:75653777-75653796 | None:intergenic | 35.0% | |
| AGAAATAGGTTTGAGGATCT+TGG | - | chr1_1:75653804-75653823 | Msa0044170:intron | 35.0% | |
| ATCTTGGAATTGTTCGAAGT+AGG | - | chr1_1:75653820-75653839 | Msa0044170:intron | 35.0% | |
| TGATGTGCCATAATAGGATT+GGG | + | chr1_1:75653846-75653865 | None:intergenic | 35.0% | |
| CTTATCATTCTGTCTTAGTC+TGG | + | chr1_1:75653870-75653889 | None:intergenic | 35.0% | |
| CCACCAAGAAAACAAAATCA+CGG | - | chr1_1:75654044-75654063 | Msa0044170:CDS | 35.0% | |
| CACCAAGAAAACAAAATCAC+GGG | - | chr1_1:75654045-75654064 | Msa0044170:CDS | 35.0% | |
| GATAGATTTCCAGTGGATAT+TGG | - | chr1_1:75654075-75654094 | Msa0044170:CDS | 35.0% | |
| !! | ATTGGCCTTGGATAATAAAG+GGG | - | chr1_1:75654093-75654112 | Msa0044170:CDS | 35.0% |
| TAAAGTTGTTGTCATGTGAC+TGG | - | chr1_1:75654133-75654152 | Msa0044170:intron | 35.0% | |
| AGGCTCTTGTGTAAAAAACA+TGG | - | chr1_1:75654183-75654202 | Msa0044170:intron | 35.0% | |
| TCATCCGAGTCCAATAAAAA+GGG | + | chr1_1:75654288-75654307 | None:intergenic | 35.0% | |
| ATCATCCGAGTCCAATAAAA+AGG | + | chr1_1:75654289-75654308 | None:intergenic | 35.0% | |
| TATTGGACTCGGATGATAAT+TGG | - | chr1_1:75654292-75654311 | Msa0044170:intron | 35.0% | |
| AATACCATACAACGCAATTG+AGG | + | chr1_1:75654318-75654337 | None:intergenic | 35.0% | |
| CGTTGTATGGTATTTGTAGT+TGG | - | chr1_1:75654324-75654343 | Msa0044170:intron | 35.0% | |
| CACTACAATTGAATCCACAA+TGG | + | chr1_1:75654533-75654552 | None:intergenic | 35.0% | |
| GATTATGTACCCGAAACAAA+TGG | + | chr1_1:75654876-75654895 | None:intergenic | 35.0% | |
| !!! | TTTGGCTTTTCACATTCTTG+TGG | - | chr1_1:75655044-75655063 | Msa0044170:intron | 35.0% |
| !!! | TTGTGGTTTTGTCTTTATGG+AGG | - | chr1_1:75655061-75655080 | Msa0044170:intron | 35.0% |
| AAACCGTGTATTAGATTGGA+TGG | - | chr1_1:75655107-75655126 | Msa0044170:CDS | 35.0% | |
| CGTATTTGTAGCCATAATTG+AGG | - | chr1_1:75655187-75655206 | Msa0044170:intron | 35.0% | |
| AATACTTGGTCCCTCAATTA+TGG | + | chr1_1:75655201-75655220 | None:intergenic | 35.0% | |
| ATGAATAAATCTGTCTGTCC+AGG | + | chr1_1:75655309-75655328 | None:intergenic | 35.0% | |
| GGATTTGTGAAGTGGAAAAT+GGG | - | chr1_1:75655813-75655832 | Msa0044170:intron | 35.0% | |
| AGAGCTTGAGAGAAAGAAAT+GGG | + | chr1_1:75656149-75656168 | None:intergenic | 35.0% | |
| AAGAGCTTGAGAGAAAGAAA+TGG | + | chr1_1:75656150-75656169 | None:intergenic | 35.0% | |
| !!! | CTCTCAAGCTCTTTTTAAGT+TGG | - | chr1_1:75656157-75656176 | Msa0044170:intron | 35.0% |
| TCGCCTATTAGAGAATAACA+AGG | + | chr1_1:75656192-75656211 | None:intergenic | 35.0% | |
| ! | TTGTTATTCTCTAATAGGCG+AGG | - | chr1_1:75656191-75656210 | Msa0044170:intron | 35.0% |
| TTTGGCAATATTGTGGTAGA+AGG | - | chr1_1:75656413-75656432 | Msa0044170:intron | 35.0% | |
| CATTTGGCCATTAACACATT+AGG | + | chr1_1:75656453-75656472 | None:intergenic | 35.0% | |
| CTAATGTGTTAATGGCCAAA+TGG | - | chr1_1:75656451-75656470 | Msa0044170:intron | 35.0% | |
| TCCATTTCATCTAAGCACTA+TGG | - | chr1_1:75656549-75656568 | Msa0044170:intron | 35.0% | |
| TCCATAGTGCTTAGATGAAA+TGG | + | chr1_1:75656553-75656572 | None:intergenic | 35.0% | |
| TTGATACACAAATTGCACGA+AGG | + | chr1_1:75656744-75656763 | None:intergenic | 35.0% | |
| TTTGGCACTATTTCCTATTG+TGG | + | chr1_1:75657106-75657125 | None:intergenic | 35.0% | |
| AATAGGAAATAGTGCCAAAG+AGG | - | chr1_1:75657107-75657126 | Msa0044170:intron | 35.0% | |
| ! | TCCATTTTCAGTATCCTCTT+TGG | + | chr1_1:75657124-75657143 | None:intergenic | 35.0% |
| ACATGAATGATACATCCCAT+AGG | - | chr1_1:75657248-75657267 | Msa0044170:intron | 35.0% | |
| AATTATCAGAGCCTACCTAT+GGG | + | chr1_1:75657266-75657285 | None:intergenic | 35.0% | |
| TAATCAGCATTGTTGACAAG+TGG | - | chr1_1:75657383-75657402 | Msa0044170:CDS | 35.0% | |
| ATATATGTCTCGTATGCAGA+AGG | - | chr1_1:75657451-75657470 | Msa0044170:CDS | 35.0% | |
| TATGCAGAAGGTTTATTCCT+GGG | - | chr1_1:75657463-75657482 | Msa0044170:CDS | 35.0% | |
| CATATCAATGTTCACAGAAC+TGG | + | chr1_1:75657683-75657702 | None:intergenic | 35.0% | |
| GACATTACTGGCATTCAATT+CGG | + | chr1_1:75657714-75657733 | None:intergenic | 35.0% | |
| CACTTGATTGAAGACATTAC+TGG | + | chr1_1:75657726-75657745 | None:intergenic | 35.0% | |
| AAACTCCAGTTATGGAGTAA+AGG | + | chr1_1:75657864-75657883 | None:intergenic | 35.0% | |
| !! | ATATGCATTTTCAGGGACAT+AGG | + | chr1_1:75657887-75657906 | None:intergenic | 35.0% |
| TAGCTTATACGTTTGATGCA+GGG | - | chr1_1:75658052-75658071 | Msa0044170:intron | 35.0% | |
| !! | AACTTAAAAAGCACCTGTTG+AGG | + | chr1_1:75658167-75658186 | None:intergenic | 35.0% |
| TCACCAATAATGTAACTGGA+GGG | + | chr1_1:75658267-75658286 | None:intergenic | 35.0% | |
| CTTGTCACCAATAATGTAAC+TGG | + | chr1_1:75658271-75658290 | None:intergenic | 35.0% | |
| AAGTCAATTGCAAAAGATGC+TGG | - | chr1_1:75658288-75658307 | Msa0044170:CDS | 35.0% | |
| AGTCAATTGCAAAAGATGCT+GGG | - | chr1_1:75658289-75658308 | Msa0044170:CDS | 35.0% | |
| ! | TTGTCTTTAATTTCTGGAGG+TGG | + | chr1_1:75658348-75658367 | None:intergenic | 35.0% |
| ! | TTCCATCACAAAAGTACAAG+GGG | - | chr1_1:75658370-75658389 | Msa0044170:exon | 35.0% |
| CTCTTCTCAACAGTGAAAAT+GGG | - | chr1_1:75658460-75658479 | Msa0044170:five_prime_UTR | 35.0% | |
| TTTCTTAGATGACCCTTTCA+AGG | - | chr1_1:75658572-75658591 | Msa0044170:five_prime_UTR | 35.0% | |
| TGCTCAATTCAATACAGGAA+AGG | + | chr1_1:75658731-75658750 | None:intergenic | 35.0% | |
| !! | AAAGGTGCTCAATTCAATAC+AGG | + | chr1_1:75658736-75658755 | None:intergenic | 35.0% |
| ! | ACAAGGAAAGAGTTTAGGGT+AGG | - | chr1_1:75652146-75652165 | Msa0044170:three_prime_UTR | 40.0% |
| GAGAAGAGAATCCATCCAAA+TGG | - | chr1_1:75652173-75652192 | Msa0044170:three_prime_UTR | 40.0% | |
| CTGAGTAACAGATCTAAGTG+AGG | + | chr1_1:75652335-75652354 | None:intergenic | 40.0% | |
| TTGATCACAGCAATGTTGGT+TGG | + | chr1_1:75652433-75652452 | None:intergenic | 40.0% | |
| CCACATACGATCTTGTTGAA+AGG | + | chr1_1:75652566-75652585 | None:intergenic | 40.0% | |
| CCTTTCAACAAGATCGTATG+TGG | - | chr1_1:75652563-75652582 | Msa0044170:intron | 40.0% | |
| ATGAAGCACAGACACATACA+CGG | + | chr1_1:75652932-75652951 | None:intergenic | 40.0% | |
| !! | TTCGTTTTGTCGGTTAGTGT+AGG | - | chr1_1:75653225-75653244 | Msa0044170:intron | 40.0% |
| GTAGGAAATTTCTCTTTCCG+GGG | - | chr1_1:75653243-75653262 | Msa0044170:intron | 40.0% | |
| TAGGAAATTTCTCTTTCCGG+GGG | - | chr1_1:75653244-75653263 | Msa0044170:intron | 40.0% | |
| GAAGATTCCAGAGCTGTTTA+AGG | - | chr1_1:75653266-75653285 | Msa0044170:intron | 40.0% | |
| TTAAGATCACCAAGGAGGAT+TGG | - | chr1_1:75653335-75653354 | Msa0044170:intron | 40.0% | |
| GATCTAAATCAAACAGGTCC+TGG | - | chr1_1:75653756-75653775 | Msa0044170:intron | 40.0% | |
| AAGTAGGCCCAATCCTATTA+TGG | - | chr1_1:75653836-75653855 | Msa0044170:intron | 40.0% | |
| CTGATGTGCCATAATAGGAT+TGG | + | chr1_1:75653847-75653866 | None:intergenic | 40.0% | |
| ! | TGAAGTCGATTTCCTGAGTT+TGG | + | chr1_1:75653947-75653966 | None:intergenic | 40.0% |
| !!! | TTTTGTTTTCTTGGTGGACC+TGG | + | chr1_1:75654041-75654060 | None:intergenic | 40.0% |
| !!! | CCGTGATTTTGTTTTCTTGG+TGG | + | chr1_1:75654047-75654066 | None:intergenic | 40.0% |
| !!! | TGCCCGTGATTTTGTTTTCT+TGG | + | chr1_1:75654050-75654069 | None:intergenic | 40.0% |
| !! | TTGGCCTTGGATAATAAAGG+GGG | - | chr1_1:75654094-75654113 | Msa0044170:CDS | 40.0% |
| ACAACTTTACCTTTGCACCA+AGG | + | chr1_1:75654122-75654141 | None:intergenic | 40.0% | |
| ! | TTACACAAGAGCCTGTTTTC+AGG | + | chr1_1:75654177-75654196 | None:intergenic | 40.0% |
| TTCTATGACTGCAGCTAATC+TGG | + | chr1_1:75654352-75654371 | None:intergenic | 40.0% | |
| TGAATCCACAATGGTGAGAA+CGG | + | chr1_1:75654524-75654543 | None:intergenic | 40.0% | |
| GAAAGAAAGAATATCGACGG+CGG | + | chr1_1:75654570-75654589 | None:intergenic | 40.0% | |
| !! | AAAGAGAAGATTGGTGATGG+CGG | + | chr1_1:75654625-75654644 | None:intergenic | 40.0% |
| GAGAAAGAGAAGATTGGTGA+TGG | + | chr1_1:75654628-75654647 | None:intergenic | 40.0% | |
| GAGAGTGAGAAAGAGAAGAT+TGG | + | chr1_1:75654634-75654653 | None:intergenic | 40.0% | |
| ACTTCTGGTGTCTGGAAATT+TGG | - | chr1_1:75655026-75655045 | Msa0044170:intron | 40.0% | |
| CCACCATCCAATCTAATACA+CGG | + | chr1_1:75655113-75655132 | None:intergenic | 40.0% | |
| GATTCACTGCAGTTAGTGAA+AGG | + | chr1_1:75655161-75655180 | None:intergenic | 40.0% | |
| !! | TACATGGCGGAGTATTGAAT+TGG | + | chr1_1:75655277-75655296 | None:intergenic | 40.0% |
| CAGGAAAAAGTTCTACATGG+CGG | + | chr1_1:75655290-75655309 | None:intergenic | 40.0% | |
| GTCCAGGAAAAAGTTCTACA+TGG | + | chr1_1:75655293-75655312 | None:intergenic | 40.0% | |
| AGTTACAGTAGCATGGTTCT+TGG | - | chr1_1:75655503-75655522 | Msa0044170:intron | 40.0% | |
| ! | TGTTTTGCAGTTTATGCCCT+GGG | - | chr1_1:75655593-75655612 | Msa0044170:intron | 40.0% |
| ! | ACTTGCAAGGTGTTATGACT+TGG | - | chr1_1:75655692-75655711 | Msa0044170:intron | 40.0% |
| !! | CAAGGTGTTATGACTTGGTT+TGG | - | chr1_1:75655697-75655716 | Msa0044170:intron | 40.0% |
| ACTATATACAGGCAAGGATC+AGG | - | chr1_1:75655765-75655784 | Msa0044170:intron | 40.0% | |
| AGTGCTTGTCGTAGCTTATT+TGG | - | chr1_1:75655789-75655808 | Msa0044170:intron | 40.0% | |
| GTGCTTGTCGTAGCTTATTT+GGG | - | chr1_1:75655790-75655809 | Msa0044170:intron | 40.0% | |
| TGCTTGTCGTAGCTTATTTG+GGG | - | chr1_1:75655791-75655810 | Msa0044170:intron | 40.0% | |
| TATTTGGGGGATTTGTGAAG+TGG | - | chr1_1:75655805-75655824 | Msa0044170:intron | 40.0% | |
| GGGATTTGTGAAGTGGAAAA+TGG | - | chr1_1:75655812-75655831 | Msa0044170:intron | 40.0% | |
| ! | GAATGGAAGTGATAGTCTTG+CGG | - | chr1_1:75655925-75655944 | Msa0044170:intron | 40.0% |
| ! | GAGAGTCGACTTCAAATCAA+AGG | + | chr1_1:75656241-75656260 | None:intergenic | 40.0% |
| ! | GCTTTTACAGCATAGAGCAA+AGG | - | chr1_1:75656704-75656723 | Msa0044170:intron | 40.0% |
| CACAAATTGCACGAAGGAAA+GGG | + | chr1_1:75656738-75656757 | None:intergenic | 40.0% | |
| ACACAAATTGCACGAAGGAA+AGG | + | chr1_1:75656739-75656758 | None:intergenic | 40.0% | |
| !!! | AGGTTTTAGGAAAAGAGGGA+GGG | + | chr1_1:75656853-75656872 | None:intergenic | 40.0% |
| !!! | AAGGTTTTAGGAAAAGAGGG+AGG | + | chr1_1:75656854-75656873 | None:intergenic | 40.0% |
| TAAGATGCTTGAAAGTAGGG+AGG | + | chr1_1:75656898-75656917 | None:intergenic | 40.0% | |
| GCCAAAGAGGATACTGAAAA+TGG | - | chr1_1:75657120-75657139 | Msa0044170:intron | 40.0% | |
| TGCAAAATCACGGTTTCGAA+TGG | + | chr1_1:75657152-75657171 | None:intergenic | 40.0% | |
| TGCATGAAACTGGTTGCTAT+CGG | + | chr1_1:75657197-75657216 | None:intergenic | 40.0% | |
| GAATGATACATCCCATAGGT+AGG | - | chr1_1:75657252-75657271 | Msa0044170:intron | 40.0% | |
| CAATTATCAGAGCCTACCTA+TGG | + | chr1_1:75657267-75657286 | None:intergenic | 40.0% | |
| GTATGCAGAAGGTTTATTCC+TGG | - | chr1_1:75657462-75657481 | Msa0044170:CDS | 40.0% | |
| ATGCAGAAGGTTTATTCCTG+GGG | - | chr1_1:75657464-75657483 | Msa0044170:CDS | 40.0% | |
| ATGCACTTCATCACATTAGC+TGG | + | chr1_1:75657756-75657775 | None:intergenic | 40.0% | |
| GACATAGGAAACTCCAGTTA+TGG | + | chr1_1:75657872-75657891 | None:intergenic | 40.0% | |
| !!! | AACTTCTAGTTTTGACGTGC+AGG | - | chr1_1:75658029-75658048 | Msa0044170:intron | 40.0% |
| GTAGCTTATACGTTTGATGC+AGG | - | chr1_1:75658051-75658070 | Msa0044170:intron | 40.0% | |
| ! | CGGTTCTAATTGCACGTAAT+AGG | - | chr1_1:75658082-75658101 | Msa0044170:intron | 40.0% |
| TGAGGTCATCTGAATTTGGA+GGG | + | chr1_1:75658149-75658168 | None:intergenic | 40.0% | |
| TTGAGGTCATCTGAATTTGG+AGG | + | chr1_1:75658150-75658169 | None:intergenic | 40.0% | |
| CTGTTGAGGTCATCTGAATT+TGG | + | chr1_1:75658153-75658172 | None:intergenic | 40.0% | |
| CAAATTCAGATGACCTCAAC+AGG | - | chr1_1:75658151-75658170 | Msa0044170:intron | 40.0% | |
| CTTCCCTCCAGTTACATTAT+TGG | - | chr1_1:75658261-75658280 | Msa0044170:CDS | 40.0% | |
| GTCACCAATAATGTAACTGG+AGG | + | chr1_1:75658268-75658287 | None:intergenic | 40.0% | |
| ! | TCTTTAATTTCTGGAGGTGG+TGG | + | chr1_1:75658345-75658364 | None:intergenic | 40.0% |
| ! | TCCATCACAAAAGTACAAGG+GGG | - | chr1_1:75658371-75658390 | Msa0044170:exon | 40.0% |
| TACTTTATATGCACCAGACC+AGG | - | chr1_1:75658402-75658421 | Msa0044170:five_prime_UTR | 40.0% | |
| CTTTCATCAGTAAGCACAAC+AGG | + | chr1_1:75658435-75658454 | None:intergenic | 40.0% | |
| GCTCTTCTCAACAGTGAAAA+TGG | - | chr1_1:75658459-75658478 | Msa0044170:five_prime_UTR | 40.0% | |
| ! | GAAAATGGGCTTCCCAAATA+AGG | - | chr1_1:75658474-75658493 | Msa0044170:five_prime_UTR | 40.0% |
| GCTTCCCAAATAAGGTACAT+GGG | - | chr1_1:75658482-75658501 | Msa0044170:five_prime_UTR | 40.0% | |
| GTACATGGGAAATATTCCCA+TGG | - | chr1_1:75658496-75658515 | Msa0044170:five_prime_UTR | 40.0% | |
| CTTCATTAGGCTTATCTGTC+CGG | - | chr1_1:75658529-75658548 | Msa0044170:five_prime_UTR | 40.0% | |
| TACAACAGGCTTCCTTGAAA+GGG | + | chr1_1:75658587-75658606 | None:intergenic | 40.0% | |
| AATCATGTCATGGGTACAAC+AGG | + | chr1_1:75658601-75658620 | None:intergenic | 40.0% | |
| AAGTTGAACTAGCAAAGCTC+AGG | + | chr1_1:75658770-75658789 | None:intergenic | 40.0% | |
| GAGGTCCCGTAAACAAAACA+AGG | - | chr1_1:75652129-75652148 | Msa0044170:three_prime_UTR | 45.0% | |
| AAGCAGCAGTAGAACGAAGA+AGG | - | chr1_1:75652225-75652244 | Msa0044170:three_prime_UTR | 45.0% | |
| AGCAGCAGTAGAACGAAGAA+GGG | - | chr1_1:75652226-75652245 | Msa0044170:three_prime_UTR | 45.0% | |
| ACTAACAGAAACGGTGGTAG+TGG | + | chr1_1:75652539-75652558 | None:intergenic | 45.0% | |
| CAAGATCGTATGTGGCTCAA+TGG | - | chr1_1:75652571-75652590 | Msa0044170:intron | 45.0% | |
| ! | GACACTAACACTAGCACTGA+TGG | + | chr1_1:75652738-75652757 | None:intergenic | 45.0% |
| GTTAGTGTCAATGTCCTGTC+TGG | - | chr1_1:75652749-75652768 | Msa0044170:intron | 45.0% | |
| GTCAGTATTAGTGTCGTGTC+TGG | - | chr1_1:75653038-75653057 | Msa0044170:intron | 45.0% | |
| GGGTATTAAGATCACCAAGG+AGG | - | chr1_1:75653330-75653349 | Msa0044170:intron | 45.0% | |
| ! | CAATTTGCTCCAATCCTCCT+TGG | + | chr1_1:75653347-75653366 | None:intergenic | 45.0% |
| ! | ATAATGTGGGCTGCATTGCA+TGG | - | chr1_1:75653682-75653701 | Msa0044170:intron | 45.0% |
| ! | TAATGTGGGCTGCATTGCAT+GGG | - | chr1_1:75653683-75653702 | Msa0044170:intron | 45.0% |
| TCTGGCTGATGTGCCATAAT+AGG | + | chr1_1:75653852-75653871 | None:intergenic | 45.0% | |
| CAGTGACGATAGATTTCCAG+TGG | - | chr1_1:75654068-75654087 | Msa0044170:CDS | 45.0% | |
| ! | TTTCCAGTGGATATTGGCCT+TGG | - | chr1_1:75654081-75654100 | Msa0044170:CDS | 45.0% |
| TATCCAAGGCCAATATCCAC+TGG | + | chr1_1:75654087-75654106 | None:intergenic | 45.0% | |
| ! | TGGCCTTGGATAATAAAGGG+GGG | - | chr1_1:75654095-75654114 | Msa0044170:CDS | 45.0% |
| GTTGTTGTCATGTGACTGGA+AGG | - | chr1_1:75654137-75654156 | Msa0044170:intron | 45.0% | |
| CAGGTTCAAGTCCTGAAAAC+AGG | - | chr1_1:75654163-75654182 | Msa0044170:intron | 45.0% | |
| GCTGCGTACAATTCACCAAT+TGG | - | chr1_1:75654210-75654229 | Msa0044170:intron | 45.0% | |
| GCGTACAATTCACCAATTGG+CGG | - | chr1_1:75654213-75654232 | Msa0044170:intron | 45.0% | |
| CGTACAATTCACCAATTGGC+GGG | - | chr1_1:75654214-75654233 | Msa0044170:intron | 45.0% | |
| CTAAAGCTCCTGCATAAGCA+GGG | + | chr1_1:75654253-75654272 | None:intergenic | 45.0% | |
| ACTAAAGCTCCTGCATAAGC+AGG | + | chr1_1:75654254-75654273 | None:intergenic | 45.0% | |
| ! | GCTGCCCTTTTTATTGGACT+CGG | - | chr1_1:75654281-75654300 | Msa0044170:intron | 45.0% |
| TTGGCCTCAATTGCGTTGTA+TGG | - | chr1_1:75654311-75654330 | Msa0044170:intron | 45.0% | |
| GTCTAACTGCAGTGACTGTA+GGG | + | chr1_1:75654375-75654394 | None:intergenic | 45.0% | |
| TGTCTAACTGCAGTGACTGT+AGG | + | chr1_1:75654376-75654395 | None:intergenic | 45.0% | |
| AATGGTGAGAACGGTGAAGA+AGG | + | chr1_1:75654515-75654534 | None:intergenic | 45.0% | |
| GAATCGGTGGCCATTTGTTT+CGG | - | chr1_1:75654863-75654882 | Msa0044170:intron | 45.0% | |
| AATCGGTGGCCATTTGTTTC+GGG | - | chr1_1:75654864-75654883 | Msa0044170:intron | 45.0% | |
| ! | TGTTTCGGGTACATAATCGG+TGG | - | chr1_1:75654878-75654897 | Msa0044170:intron | 45.0% |
| ATTTCCAGACACCAGAAGTC+TGG | + | chr1_1:75655025-75655044 | None:intergenic | 45.0% | |
| CCGTGTATTAGATTGGATGG+TGG | - | chr1_1:75655110-75655129 | Msa0044170:CDS | 45.0% | |
| !! | CGCCATGTAGAACTTTTTCC+TGG | - | chr1_1:75655288-75655307 | Msa0044170:intron | 45.0% |
| ! | CTGTTTTGCAGTTTATGCCC+TGG | - | chr1_1:75655592-75655611 | Msa0044170:intron | 45.0% |
| ! | GTTTTGCAGTTTATGCCCTG+GGG | - | chr1_1:75655594-75655613 | Msa0044170:intron | 45.0% |
| ! | GACATTCATTAGCTTCCCCA+GGG | + | chr1_1:75655612-75655631 | None:intergenic | 45.0% |
| ! | TGACATTCATTAGCTTCCCC+AGG | + | chr1_1:75655613-75655632 | None:intergenic | 45.0% |
| GCTTGTCGTAGCTTATTTGG+GGG | - | chr1_1:75655792-75655811 | Msa0044170:intron | 45.0% | |
| ! | TTTGAAGTCGACTCTCTCAC+TGG | - | chr1_1:75656245-75656264 | Msa0044170:intron | 45.0% |
| AATCTAGCACAGCTGCCATT+TGG | + | chr1_1:75656469-75656488 | None:intergenic | 45.0% | |
| AACAGTATCACGCATTCCTG+AGG | + | chr1_1:75656673-75656692 | None:intergenic | 45.0% | |
| !!! | GTTTTAGGAAAAGAGGGAGG+GGG | + | chr1_1:75656851-75656870 | None:intergenic | 45.0% |
| !!! | GGTTTTAGGAAAAGAGGGAG+GGG | + | chr1_1:75656852-75656871 | None:intergenic | 45.0% |
| AAACTGGTTGCTATCGGTAC+AGG | + | chr1_1:75657191-75657210 | None:intergenic | 45.0% | |
| CCAGACAAACTGCATGAAAC+TGG | + | chr1_1:75657207-75657226 | None:intergenic | 45.0% | |
| CCAGTTTCATGCAGTTTGTC+TGG | - | chr1_1:75657204-75657223 | Msa0044170:intron | 45.0% | |
| TCACAGAACTGGAGATCACA+TGG | + | chr1_1:75657672-75657691 | None:intergenic | 45.0% | |
| GCAAAAGATGCTGGGATCAA+TGG | - | chr1_1:75658297-75658316 | Msa0044170:CDS | 45.0% | |
| TGCTGGGATCAATGGAATAG+AGG | - | chr1_1:75658305-75658324 | Msa0044170:CDS | 45.0% | |
| ! | TCCCCCTTGTACTTTTGTGA+TGG | + | chr1_1:75658375-75658394 | None:intergenic | 45.0% |
| TTATATGCACCAGACCAGGA+AGG | - | chr1_1:75658406-75658425 | Msa0044170:five_prime_UTR | 45.0% | |
| TATATGCACCAGACCAGGAA+GGG | - | chr1_1:75658407-75658426 | Msa0044170:five_prime_UTR | 45.0% | |
| GGCTTCCCAAATAAGGTACA+TGG | - | chr1_1:75658481-75658500 | Msa0044170:five_prime_UTR | 45.0% | |
| GTACAACAGGCTTCCTTGAA+AGG | + | chr1_1:75658588-75658607 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTCTATTATTATT+TGG | + | chr1_1:75652044-75652063 | None:intergenic | 5.0% |
| !! | TAATATATTTAAGTATTAAA+TGG | - | chr1_1:75656073-75656092 | Msa0044170:intron | 5.0% |
| GCAGCAGTAGAACGAAGAAG+GGG | - | chr1_1:75652227-75652246 | Msa0044170:three_prime_UTR | 50.0% | |
| !! | TGGAAATGGCGGGTGATAGT+TGG | - | chr1_1:75652383-75652402 | Msa0044170:CDS | 50.0% |
| !! | GGAAATGGCGGGTGATAGTT+GGG | - | chr1_1:75652384-75652403 | Msa0044170:CDS | 50.0% |
| !! | GGGTGATAGTTGGGTACTGA+TGG | - | chr1_1:75652393-75652412 | Msa0044170:CDS | 50.0% |
| GTAGTGGTGCAAAGATGAGC+GGG | + | chr1_1:75652523-75652542 | None:intergenic | 50.0% | |
| ! | GGTAGTGGTGCAAAGATGAG+CGG | + | chr1_1:75652524-75652543 | None:intergenic | 50.0% |
| GGAAGGACTAACAGAAACGG+TGG | + | chr1_1:75652545-75652564 | None:intergenic | 50.0% | |
| TCGTATGTGGCTCAATGGCA+AGG | - | chr1_1:75652576-75652595 | Msa0044170:intron | 50.0% | |
| CAAATACACGGACACCAGAC+AGG | + | chr1_1:75652766-75652785 | None:intergenic | 50.0% | |
| CAGACACGCAACACTAACAC+TGG | + | chr1_1:75652905-75652924 | None:intergenic | 50.0% | |
| GCGCAGAGAGACATATTTCG+TGG | + | chr1_1:75653151-75653170 | None:intergenic | 50.0% | |
| GGATCTCCCTTAAACAGCTC+TGG | + | chr1_1:75653276-75653295 | None:intergenic | 50.0% | |
| TGCAGTGGGGAAGTTGTTGT+AGG | + | chr1_1:75653386-75653405 | None:intergenic | 50.0% | |
| !! | TGGATTGGCTTCATCAGCTG+CGG | - | chr1_1:75653408-75653427 | Msa0044170:intron | 50.0% |
| GGCCTTGGATAATAAAGGGG+GGG | - | chr1_1:75654096-75654115 | Msa0044170:CDS | 50.0% | |
| TCATGTGACTGGAAGGTCAC+AGG | - | chr1_1:75654144-75654163 | Msa0044170:intron | 50.0% | |
| ! | CACCAGGCTGCCCTTTTTAT+TGG | - | chr1_1:75654275-75654294 | Msa0044170:intron | 50.0% |
| GTCCAATAAAAAGGGCAGCC+TGG | + | chr1_1:75654280-75654299 | None:intergenic | 50.0% | |
| AGAAGGTCAGGGGAAAACGT+GGG | + | chr1_1:75654498-75654517 | None:intergenic | 50.0% | |
| AAGAAGGTCAGGGGAAAACG+TGG | + | chr1_1:75654499-75654518 | None:intergenic | 50.0% | |
| AGAACGGTGAAGAAGGTCAG+GGG | + | chr1_1:75654508-75654527 | None:intergenic | 50.0% | |
| GAGAACGGTGAAGAAGGTCA+GGG | + | chr1_1:75654509-75654528 | None:intergenic | 50.0% | |
| TGAGAACGGTGAAGAAGGTC+AGG | + | chr1_1:75654510-75654529 | None:intergenic | 50.0% | |
| CTTCACCGTTCTCACCATTG+TGG | - | chr1_1:75654516-75654535 | Msa0044170:intron | 50.0% | |
| GAGTAGCAGTTCCAGACTTC+TGG | - | chr1_1:75655011-75655030 | Msa0044170:intron | 50.0% | |
| AGTTCCAGACTTCTGGTGTC+TGG | - | chr1_1:75655018-75655037 | Msa0044170:intron | 50.0% | |
| ACCTTGCAATAGCAGACAGC+TGG | + | chr1_1:75655649-75655668 | None:intergenic | 50.0% | |
| ! | CTAGGTTAGCTCTCGGCAAA+AGG | - | chr1_1:75656635-75656654 | Msa0044170:intron | 50.0% |
| AAGGAAACTAGCAGCACCTC+AGG | - | chr1_1:75656654-75656673 | Msa0044170:intron | 50.0% | |
| GCTTGAAAGTAGGGAGGTCT+TGG | + | chr1_1:75656892-75656911 | None:intergenic | 50.0% | |
| CCTGTGGAGCTTCTTCTGAA+CGG | + | chr1_1:75657411-75657430 | None:intergenic | 50.0% | |
| CGTGCAATTAGAACCGCGTT+TGG | + | chr1_1:75658078-75658097 | None:intergenic | 50.0% | |
| ! | TGGAGGGAAGAGAGTTTTGC+AGG | + | chr1_1:75658251-75658270 | None:intergenic | 50.0% |
| ATATGCACCAGACCAGGAAG+GGG | - | chr1_1:75658408-75658427 | Msa0044170:five_prime_UTR | 50.0% | |
| !! | TAGCTTGCTCGTGCAACACG+AGG | + | chr1_1:75651976-75651995 | None:intergenic | 55.0% |
| !! | ACAGCTCTGGAATCTTCCCC+CGG | + | chr1_1:75653263-75653282 | None:intergenic | 55.0% |
| AACAACTTCCCCACTGCAGC+TGG | - | chr1_1:75653388-75653407 | Msa0044170:intron | 55.0% | |
| AAGCCAATCCAGCTGCAGTG+GGG | + | chr1_1:75653399-75653418 | None:intergenic | 55.0% | |
| GAAGCCAATCCAGCTGCAGT+GGG | + | chr1_1:75653400-75653419 | None:intergenic | 55.0% | |
| TGAAGCCAATCCAGCTGCAG+TGG | + | chr1_1:75653401-75653420 | None:intergenic | 55.0% | |
| !! | GGATTGGCTTCATCAGCTGC+GGG | - | chr1_1:75653409-75653428 | Msa0044170:intron | 55.0% |
| GGCCCCCCCTTTATTATCCA+AGG | + | chr1_1:75654101-75654120 | None:intergenic | 55.0% | |
| GGATAATAAAGGGGGGGCCT+TGG | - | chr1_1:75654102-75654121 | Msa0044170:CDS | 55.0% | |
| CATAAGCAGGGTTCGGGAAG+GGG | + | chr1_1:75654241-75654260 | None:intergenic | 55.0% | |
| GCATAAGCAGGGTTCGGGAA+GGG | + | chr1_1:75654242-75654261 | None:intergenic | 55.0% | |
| TGCATAAGCAGGGTTCGGGA+AGG | + | chr1_1:75654243-75654262 | None:intergenic | 55.0% | |
| TTCCCGAACCCTGCTTATGC+AGG | - | chr1_1:75654242-75654261 | Msa0044170:intron | 55.0% | |
| CTCCTGCATAAGCAGGGTTC+GGG | + | chr1_1:75654247-75654266 | None:intergenic | 55.0% | |
| GCTCCTGCATAAGCAGGGTT+CGG | + | chr1_1:75654248-75654267 | None:intergenic | 55.0% | |
| ! | TGCAGGAGCTTTAGTGCACC+AGG | - | chr1_1:75654259-75654278 | Msa0044170:intron | 55.0% |
| AGCCAACGCCAGACAGATGA+CGG | + | chr1_1:75654667-75654686 | None:intergenic | 55.0% | |
| CTGGAACTGCTACTCTGTGC+TGG | + | chr1_1:75655006-75655025 | None:intergenic | 55.0% | |
| GCCAGCTGTCTGCTATTGCA+AGG | - | chr1_1:75655645-75655664 | Msa0044170:intron | 55.0% | |
| CGACTCTCTCACTGGAAGTG+CGG | - | chr1_1:75656253-75656272 | Msa0044170:intron | 55.0% | |
| CCGTTCAGAAGAAGCTCCAC+AGG | - | chr1_1:75657408-75657427 | Msa0044170:CDS | 55.0% | |
| GTTTGATGCAGGGCCAAACG+CGG | - | chr1_1:75658062-75658081 | Msa0044170:intron | 55.0% | |
| CAACATCACACGCGCGAGCA+CGG | + | chr1_1:75653297-75653316 | None:intergenic | 60.0% | |
| TGCTCGCGCGTGTGATGTTG+AGG | - | chr1_1:75653297-75653316 | Msa0044170:intron | 60.0% | |
| CTTCCCCACTGCAGCTGGAT+TGG | - | chr1_1:75653393-75653412 | Msa0044170:intron | 60.0% | |
| GCTGCGGGTTTCGCTTGTCT+TGG | - | chr1_1:75653424-75653443 | Msa0044170:intron | 60.0% | |
| TCTCCCTGCCGTCATCTGTC+TGG | - | chr1_1:75654656-75654675 | Msa0044170:intron | 60.0% | |
| ! | ACGCCAGACAGATGACGGCA+GGG | + | chr1_1:75654662-75654681 | None:intergenic | 60.0% |
| ! | AACGCCAGACAGATGACGGC+AGG | + | chr1_1:75654663-75654682 | None:intergenic | 60.0% |
| TGCCGTCATCTGTCTGGCGT+TGG | - | chr1_1:75654662-75654681 | Msa0044170:intron | 60.0% | |
| !! | CATCTGTCTGGCGTTGGCTG+CGG | - | chr1_1:75654668-75654687 | Msa0044170:intron | 60.0% |
| AAAAGAGGGAGGGGGAGAGG+TGG | + | chr1_1:75656843-75656862 | None:intergenic | 60.0% | |
| AGGAAAAGAGGGAGGGGGAG+AGG | + | chr1_1:75656846-75656865 | None:intergenic | 60.0% | |
| AACAGGTCCCCTTCCTGGTC+TGG | + | chr1_1:75658418-75658437 | None:intergenic | 60.0% | |
| AGCACAACAGGTCCCCTTCC+TGG | + | chr1_1:75658423-75658442 | None:intergenic | 60.0% | |
| GTGCAACACGAGGCCACCGT+GGG | + | chr1_1:75651966-75651985 | None:intergenic | 65.0% | |
| ! | AAGGGGGGGCCTTGGTGCAA+AGG | - | chr1_1:75654110-75654129 | Msa0044170:CDS | 65.0% |
| !! | CTGGCGTTGGCTGCGGACAT+CGG | - | chr1_1:75654675-75654694 | Msa0044170:intron | 65.0% |
| CGTGCAACACGAGGCCACCG+TGG | + | chr1_1:75651967-75651986 | None:intergenic | 70.0% | |
| CGGGAAGGGGTCCCGCCAAT+TGG | + | chr1_1:75654228-75654247 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 75651958 | 75658810 | 75651958 | ID=Msa0044170;Name=Msa0044170 |
| chr1_1 | mRNA | 75651958 | 75658810 | 75651958 | ID=Msa0044170-mRNA-1;Parent=Msa0044170;Name=Msa0044170-mRNA-1;_AED=0.07;_eAED=0.07;_QI=430|1|1|1|0.88|1|10|316|418 |
| chr1_1 | exon | 75651958 | 75652496 | 75651958 | ID=Msa0044170-mRNA-1:exon:25550;Parent=Msa0044170-mRNA-1 |
| chr1_1 | exon | 75652596 | 75652717 | 75652596 | ID=Msa0044170-mRNA-1:exon:25549;Parent=Msa0044170-mRNA-1 |
| chr1_1 | exon | 75653339 | 75653387 | 75653339 | ID=Msa0044170-mRNA-1:exon:25548;Parent=Msa0044170-mRNA-1 |
| chr1_1 | exon | 75653499 | 75653656 | 75653499 | ID=Msa0044170-mRNA-1:exon:25547;Parent=Msa0044170-mRNA-1 |
| chr1_1 | exon | 75654043 | 75654129 | 75654043 | ID=Msa0044170-mRNA-1:exon:25546;Parent=Msa0044170-mRNA-1 |
| chr1_1 | exon | 75654768 | 75654848 | 75654768 | ID=Msa0044170-mRNA-1:exon:25545;Parent=Msa0044170-mRNA-1 |
| chr1_1 | exon | 75654929 | 75654992 | 75654929 | ID=Msa0044170-mRNA-1:exon:25544;Parent=Msa0044170-mRNA-1 |
| chr1_1 | exon | 75655102 | 75655165 | 75655102 | ID=Msa0044170-mRNA-1:exon:25543;Parent=Msa0044170-mRNA-1 |
| chr1_1 | exon | 75657323 | 75657521 | 75657323 | ID=Msa0044170-mRNA-1:exon:25542;Parent=Msa0044170-mRNA-1 |
| chr1_1 | exon | 75658171 | 75658810 | 75658171 | ID=Msa0044170-mRNA-1:exon:25541;Parent=Msa0044170-mRNA-1 |
| chr1_1 | five_prime_UTR | 75658381 | 75658810 | 75658381 | ID=Msa0044170-mRNA-1:five_prime_utr;Parent=Msa0044170-mRNA-1 |
| chr1_1 | CDS | 75658171 | 75658380 | 75658171 | ID=Msa0044170-mRNA-1:cds;Parent=Msa0044170-mRNA-1 |
| chr1_1 | CDS | 75657323 | 75657521 | 75657323 | ID=Msa0044170-mRNA-1:cds;Parent=Msa0044170-mRNA-1 |
| chr1_1 | CDS | 75655102 | 75655165 | 75655102 | ID=Msa0044170-mRNA-1:cds;Parent=Msa0044170-mRNA-1 |
| chr1_1 | CDS | 75654929 | 75654992 | 75654929 | ID=Msa0044170-mRNA-1:cds;Parent=Msa0044170-mRNA-1 |
| chr1_1 | CDS | 75654768 | 75654848 | 75654768 | ID=Msa0044170-mRNA-1:cds;Parent=Msa0044170-mRNA-1 |
| chr1_1 | CDS | 75654043 | 75654129 | 75654043 | ID=Msa0044170-mRNA-1:cds;Parent=Msa0044170-mRNA-1 |
| chr1_1 | CDS | 75653499 | 75653656 | 75653499 | ID=Msa0044170-mRNA-1:cds;Parent=Msa0044170-mRNA-1 |
| chr1_1 | CDS | 75653339 | 75653387 | 75653339 | ID=Msa0044170-mRNA-1:cds;Parent=Msa0044170-mRNA-1 |
| chr1_1 | CDS | 75652596 | 75652717 | 75652596 | ID=Msa0044170-mRNA-1:cds;Parent=Msa0044170-mRNA-1 |
| chr1_1 | CDS | 75652274 | 75652496 | 75652274 | ID=Msa0044170-mRNA-1:cds;Parent=Msa0044170-mRNA-1 |
| chr1_1 | three_prime_UTR | 75651958 | 75652273 | 75651958 | ID=Msa0044170-mRNA-1:three_prime_utr;Parent=Msa0044170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
