AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0437540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437540 MtrunA17_Chr1g0210791 98.325 418 7 0 1 418 1 418 0.0 853
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0437540 AT3G54250.1 80.668 419 80 1 1 418 1 419 0.0 697
Msa0437540 AT2G38700.1 76.372 419 91 2 1 418 1 412 0.0 654
Msa0437540 AT3G54250.2 84.039 307 49 0 1 307 1 307 0.0 530

Find 160 sgRNAs with CRISPR-Local

Find 471 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTCCCATGTACCTTATT+TGG 0.031696 3_3:+1297945 None:intergenic
GCTCTTCTCAACAGTGAAAA+TGG 0.180412 3_3:-1297973 Msa0437540:CDS
CTTCCCTCCAGTTACATTAT+TGG 0.191653 3_3:-1298171 Msa0437540:intron
GGAATATTGTCTTTAATTTC+TGG 0.195761 3_3:+1298081 None:intergenic
GAAGATTCCAGAGCTGTTTA+AGG 0.204279 3_3:-1303170 Msa0437540:CDS
AGTGCTTGTCGTAGCTTATT+TGG 0.220437 3_3:-1300643 Msa0437540:CDS
GTGTAGGAAATTTCTCTTTC+CGG 0.230107 3_3:-1303195 Msa0437540:intron
GGGATTTGTGAAGTGGAAAA+TGG 0.242630 3_3:-1300620 Msa0437540:CDS
TGATGTTGAGGATAATAAAA+AGG 0.260260 3_3:-1303127 Msa0437540:CDS
GTGCTTGTCGTAGCTTATTT+GGG 0.264802 3_3:-1300642 Msa0437540:CDS
ATCATTAACAGGTAAGATTA+GGG 0.303873 3_3:+1303960 None:intergenic
GCTCAGGAGAATTAAATTAA+AGG 0.305398 3_3:+1297681 None:intergenic
TATCATTCATGTAAAATATA+GGG 0.309352 3_3:+1299195 None:intergenic
GCATGGTGATTTGATTTAAT+AGG 0.311492 3_3:-1304329 Msa0437540:five_prime_UTR
CGGTTCTAATTGCACGTAAT+AGG 0.313651 3_3:-1298350 Msa0437540:CDS
GCCAAAGAGGATACTGAAAA+TGG 0.316786 3_3:-1299312 Msa0437540:CDS
TGGTTGATCTATTCTTCATT+AGG 0.316789 3_3:-1297916 Msa0437540:three_prime_UTR
CTGTTGAGGTCATCTGAATT+TGG 0.317231 3_3:+1298282 None:intergenic
TATCATTAACAGGTAAGATT+AGG 0.322166 3_3:+1303959 None:intergenic
GTATCATTCATGTAAAATAT+AGG 0.322715 3_3:+1299194 None:intergenic
CATTGCTGTGATCAAGTATT+GGG 0.327233 3_3:-1303998 Msa0437540:CDS
AACAGGTCCCCTTCCTGGTC+TGG 0.327487 3_3:+1298017 None:intergenic
TATATATATTAGTTAGTAAT+GGG 0.329149 3_3:+1304158 None:intergenic
AACAAAACAAGGAAAGAGTT+AGG 0.335219 3_3:-1304296 Msa0437540:five_prime_UTR
TTATTTATTCATTTCCCATT+TGG 0.336742 3_3:+1304249 None:intergenic
TGTAGGAAATTTCTCTTTCC+GGG 0.344687 3_3:-1303194 Msa0437540:intron
CCAGTTTCATGCAGTTTGTC+TGG 0.349580 3_3:-1299228 Msa0437540:CDS
GAAAATGGGCTTCCCAAATA+AGG 0.349886 3_3:-1297958 Msa0437540:exon
TTTGATTGATTTATTGGAAA+TGG 0.357406 3_3:-1304067 Msa0437540:exon
ATTTCCCATGTACCTTATTT+GGG 0.363262 3_3:+1297946 None:intergenic
TATTTCTATTATTATTTGGT+TGG 0.373112 3_3:+1304399 None:intergenic
CTTCATTAGGCTTATCTGTC+CGG 0.383929 3_3:-1297903 Msa0437540:three_prime_UTR
CTTCCCCACTGCAGCTGGAT+TGG 0.391119 3_3:-1303043 Msa0437540:CDS
GAGATTAAATTGAATTCGTT+CGG 0.405752 3_3:+1304186 None:intergenic
CAATTTGCTCCAATCCTCCT+TGG 0.409304 3_3:+1303092 None:intergenic
CCAGACAAACTGCATGAAAC+TGG 0.411135 3_3:+1299228 None:intergenic
AACAACTTCCCCACTGCAGC+TGG 0.415060 3_3:-1303048 Msa0437540:CDS
CGTGCAATTAGAACCGCGTT+TGG 0.416780 3_3:+1298357 None:intergenic
TGGAAATGGCGGGTGATAGT+TGG 0.416905 3_3:-1304053 Msa0437540:exon
AAAGCAACTTCTGAATCAAA+AGG 0.417167 3_3:+1298316 None:intergenic
AATCATGTCATGGGTACAAC+AGG 0.421940 3_3:+1297834 None:intergenic
GAGAAGAGAATCCATCCAAA+TGG 0.429630 3_3:-1304264 Msa0437540:five_prime_UTR
CTTTCATCAGTAAGCACAAC+AGG 0.429825 3_3:+1298000 None:intergenic
TTTCTTAGATGACCCTTTCA+AGG 0.430043 3_3:-1297860 Msa0437540:three_prime_UTR
AGCACAACAGGTCCCCTTCC+TGG 0.433113 3_3:+1298012 None:intergenic
CTAGGTTAGCTCTCGGCAAA+AGG 0.434194 3_3:-1299797 Msa0437540:intron
CAAATTCAGATGACCTCAAC+AGG 0.435218 3_3:-1298281 Msa0437540:intron
GCAAAAGATGCTGGGATCAA+TGG 0.438234 3_3:-1298135 Msa0437540:CDS
ACACTGATACTATCATTAAC+AGG 0.448731 3_3:+1303949 None:intergenic
AAGTCAATTGCAAAAGATGC+TGG 0.449709 3_3:-1298144 Msa0437540:CDS
CTCTTCTCAACAGTGAAAAT+GGG 0.455253 3_3:-1297972 Msa0437540:CDS
AAGATTCCAGAGCTGTTTAA+GGG 0.458336 3_3:-1303169 Msa0437540:CDS
GCTGCGGGTTTCGCTTGTCT+TGG 0.462943 3_3:-1303012 Msa0437540:intron
GGATTTGTGAAGTGGAAAAT+GGG 0.468572 3_3:-1300619 Msa0437540:CDS
TTATATATATTAGTTAGTAA+TGG 0.470292 3_3:+1304157 None:intergenic
TGACATTCATTAGCTTCCCC+AGG 0.470709 3_3:+1300825 None:intergenic
GGAAATGGCGGGTGATAGTT+GGG 0.471328 3_3:-1304052 Msa0437540:exon
TCCAATAAATCAATCAAAAG+AGG 0.473214 3_3:+1304072 None:intergenic
CAAGATCGTATGTGGCTCAA+TGG 0.475195 3_3:-1303865 Msa0437540:CDS
GGATCTCCCTTAAACAGCTC+TGG 0.477766 3_3:+1303163 None:intergenic
ACATTGCTGTGATCAAGTAT+TGG 0.482733 3_3:-1303999 Msa0437540:CDS
GTAGCTTATACGTTTGATGC+AGG 0.483477 3_3:-1298381 Msa0437540:CDS
AAGGAAACTAGCAGCACCTC+AGG 0.484840 3_3:-1299778 Msa0437540:CDS
ACCTTGCAATAGCAGACAGC+TGG 0.485298 3_3:+1300789 None:intergenic
CCTTTCAACAAGATCGTATG+TGG 0.485330 3_3:-1303873 Msa0437540:CDS
TTGTCTTTAATTTCTGGAGG+TGG 0.485942 3_3:+1298087 None:intergenic
TTATTCATTTCCCATTTGGA+TGG 0.486621 3_3:+1304253 None:intergenic
TGATATTTATAGGAGGAGAA+TGG 0.489664 3_3:-1300524 Msa0437540:intron
TTAAGATCACCAAGGAGGAT+TGG 0.489853 3_3:-1303101 Msa0437540:CDS
GGCTTCCCAAATAAGGTACA+TGG 0.490515 3_3:-1297951 Msa0437540:exon
AACTTGCTGATGAAAAGCAT+TGG 0.492166 3_3:-1300481 Msa0437540:CDS
AAACTGGTTGCTATCGGTAC+AGG 0.492574 3_3:+1299244 None:intergenic
TCTTTAATTTCTGGAGGTGG+TGG 0.493387 3_3:+1298090 None:intergenic
ACTATATACAGGCAAGGATC+AGG 0.494638 3_3:-1300667 Msa0437540:intron
AAAGGTGCTCAATTCAATAC+AGG 0.495352 3_3:+1297699 None:intergenic
TGCAAAATCACGGTTTCGAA+TGG 0.495401 3_3:+1299283 None:intergenic
AGAAGAGAATCCATCCAAAT+GGG 0.499644 3_3:-1304263 Msa0437540:five_prime_UTR
GTACAACAGGCTTCCTTGAA+AGG 0.505102 3_3:+1297847 None:intergenic
AAGCAGCAGTACAACGAAGA+AGG 0.508181 3_3:-1304212 Msa0437540:five_prime_UTR
TGCTGGGATCAATGGAATAG+AGG 0.509843 3_3:-1298127 Msa0437540:CDS
TGGATTGGCTTCATCAGCTG+CGG 0.515526 3_3:-1303028 Msa0437540:CDS
CCGTTCAGAAGAAGCTCCAC+AGG 0.520575 3_3:-1299024 Msa0437540:intron
TACTTTATATGCACCAGACC+AGG 0.522597 3_3:-1298030 Msa0437540:CDS
TGGTGATTTGATTTAATAGG+AGG 0.523567 3_3:-1304326 Msa0437540:five_prime_UTR
GAACACAAATAATCATGTCA+TGG 0.523799 3_3:+1297824 None:intergenic
ACTTGCTGATGAAAAGCATT+GGG 0.525139 3_3:-1300480 Msa0437540:CDS
TACAACAGGCTTCCTTGAAA+GGG 0.527193 3_3:+1297848 None:intergenic
TTGAGGTCATCTGAATTTGG+AGG 0.527987 3_3:+1298285 None:intergenic
TGCTTGTCGTAGCTTATTTG+GGG 0.531557 3_3:-1300641 Msa0437540:CDS
TGCAGTGGGGAAGTTGTTGT+AGG 0.531785 3_3:+1303053 None:intergenic
ACAAAACAAGGAAAGAGTTA+GGG 0.535738 3_3:-1304295 Msa0437540:five_prime_UTR
ACAGCTCTGGAATCTTCCCC+CGG 0.536812 3_3:+1303176 None:intergenic
GGATTGGCTTCATCAGCTGC+GGG 0.537741 3_3:-1303027 Msa0437540:CDS
ACTAACAGAAACGGTGGTAG+TGG 0.541116 3_3:+1303900 None:intergenic
TATTCCATCACAAAAGTACA+AGG 0.548644 3_3:-1298064 Msa0437540:CDS
AAGTTGAACTAGCAAAGCTC+AGG 0.551576 3_3:+1297665 None:intergenic
AAGCAACTTCTGAATCAAAA+GGG 0.555123 3_3:+1298317 None:intergenic
TTTATTTCTAGGTTAGCTCT+CGG 0.556502 3_3:-1299804 Msa0437540:intron
AACACAAATAATCATGTCAT+GGG 0.557351 3_3:+1297825 None:intergenic
ATCATTCATGTAAAATATAG+GGG 0.557388 3_3:+1299196 None:intergenic
TGCATGAAACTGGTTGCTAT+CGG 0.559504 3_3:+1299238 None:intergenic
AGCAGCAGTACAACGAAGAA+GGG 0.566437 3_3:-1304211 Msa0437540:five_prime_UTR
TAGCTTATACGTTTGATGCA+GGG 0.567321 3_3:-1298380 Msa0437540:CDS
TGAAGCCAATCCAGCTGCAG+TGG 0.570482 3_3:+1303038 None:intergenic
AATGAAGAATAGATCAACCA+TGG 0.572623 3_3:+1297919 None:intergenic
GATTGAATTGAATTATGTAA+CGG 0.573370 3_3:+1304432 None:intergenic
TATATGCACCAGACCAGGAA+GGG 0.575319 3_3:-1298025 Msa0437540:CDS
GACATTCATTAGCTTCCCCA+GGG 0.579343 3_3:+1300826 None:intergenic
GATTGATTTATTGGAAATGG+CGG 0.580799 3_3:-1304064 Msa0437540:exon
AATAGGAAATAGTGCCAAAG+AGG 0.581666 3_3:-1299325 Msa0437540:intron
ATATTGTCTTTAATTTCTGG+AGG 0.581787 3_3:+1298084 None:intergenic
GAAGCCAATCCAGCTGCAGT+GGG 0.584983 3_3:+1303039 None:intergenic
TTCCATCACAAAAGTACAAG+GGG 0.586717 3_3:-1298062 Msa0437540:CDS
TAATCAGCATTGTTGACAAG+TGG 0.588743 3_3:-1299049 Msa0437540:CDS
TGCTCAATTCAATACAGGAA+AGG 0.588746 3_3:+1297704 None:intergenic
AGTCAATTGCAAAAGATGCT+GGG 0.589588 3_3:-1298143 Msa0437540:CDS
CAACATCACACGCGCGAGCA+CGG 0.590089 3_3:+1303142 None:intergenic
TGCTCGCGCGTGTGATGTTG+AGG 0.590241 3_3:-1303139 Msa0437540:CDS
CCTGTGGAGCTTCTTCTGAA+CGG 0.591583 3_3:+1299024 None:intergenic
ATACTTGATCACAGCAATGT+TGG 0.591879 3_3:+1304002 None:intergenic
ATTGATTTATTGGAAATGGC+GGG 0.593123 3_3:-1304063 Msa0437540:exon
ATACGATCTTGTTGAAAGGA+AGG 0.593700 3_3:+1303877 None:intergenic
ACTTGTTATTGTTATTGCTG+TGG 0.594012 3_3:-1300453 Msa0437540:intron
GGGTGATAGTTGGGTACTGA+TGG 0.595158 3_3:-1304043 Msa0437540:CDS
GTAGTGGTGCAAAGATGAGC+GGG 0.598911 3_3:+1303916 None:intergenic
TATGTTTATTGAATATTGCA+TGG 0.600725 3_3:-1304346 Msa0437540:five_prime_UTR
CCACATACGATCTTGTTGAA+AGG 0.601733 3_3:+1303873 None:intergenic
AACAGTATCACGCATTCCTG+AGG 0.602816 3_3:+1299762 None:intergenic
TCGTATGTGGCTCAATGGCA+AGG 0.603313 3_3:-1303860 Msa0437540:intron
TGAGGTCATCTGAATTTGGA+GGG 0.603420 3_3:+1298286 None:intergenic
GCCAGCTGTCTGCTATTGCA+AGG 0.603691 3_3:-1300790 Msa0437540:intron
GTGCAACACGAGGCCACCGT+GGG 0.613401 3_3:+1304468 None:intergenic
GCTTGTCGTAGCTTATTTGG+GGG 0.616141 3_3:-1300640 Msa0437540:CDS
GTAGGAAATTTCTCTTTCCG+GGG 0.619131 3_3:-1303193 Msa0437540:intron
AAAGGAAGGACTAACAGAAA+CGG 0.623699 3_3:+1303891 None:intergenic
ATATGCACCAGACCAGGAAG+GGG 0.629282 3_3:-1298024 Msa0437540:CDS
ATGAAGAATAGATCAACCAT+GGG 0.632388 3_3:+1297920 None:intergenic
GAGGTCCCGTAAACAAAACA+AGG 0.633143 3_3:-1304307 Msa0437540:five_prime_UTR
TTGATCACAGCAATGTTGGT+TGG 0.639254 3_3:+1304006 None:intergenic
ACATGAATGATACATCCCAT+AGG 0.641400 3_3:-1299184 Msa0437540:intron
ATTCCATCACAAAAGTACAA+GGG 0.644199 3_3:-1298063 Msa0437540:CDS
GCAGCAGTACAACGAAGAAG+GGG 0.653540 3_3:-1304210 Msa0437540:five_prime_UTR
CTGAGTAACAGATCTAAGTG+AGG 0.656597 3_3:+1304105 None:intergenic
TCATTCATGTAAAATATAGG+GGG 0.658384 3_3:+1299197 None:intergenic
GGTAGTGGTGCAAAGATGAG+CGG 0.659191 3_3:+1303915 None:intergenic
GCTTCCCAAATAAGGTACAT+GGG 0.661948 3_3:-1297950 Msa0437540:exon
CGTGCAACACGAGGCCACCG+TGG 0.662723 3_3:+1304467 None:intergenic
GAATGGAAGTGATAGTCTTG+CGG 0.663425 3_3:-1300507 Msa0437540:CDS
TAGCTTGCTCGTGCAACACG+AGG 0.663910 3_3:+1304458 None:intergenic
ATTGCTGTGATCAAGTATTG+GGG 0.675109 3_3:-1303997 Msa0437540:CDS
GTACATGGGAAATATTCCCA+TGG 0.678115 3_3:-1297936 Msa0437540:three_prime_UTR
GTTTGATGCAGGGCCAAACG+CGG 0.678166 3_3:-1298370 Msa0437540:CDS
TTATATGCACCAGACCAGGA+AGG 0.679375 3_3:-1298026 Msa0437540:CDS
TAGGAAATTTCTCTTTCCGG+GGG 0.687639 3_3:-1303192 Msa0437540:CDS
AACAAGGAAAGAGTTAGGGT+AGG 0.690689 3_3:-1304291 Msa0437540:five_prime_UTR
GGGTATTAAGATCACCAAGG+AGG 0.716838 3_3:-1303106 Msa0437540:CDS
GGAAGGACTAACAGAAACGG+TGG 0.719571 3_3:+1303894 None:intergenic
AAAGGGTATTAAGATCACCA+AGG 0.729322 3_3:-1303109 Msa0437540:CDS
TCCATCACAAAAGTACAAGG+GGG 0.737564 3_3:-1298061 Msa0437540:CDS
AAGCCAATCCAGCTGCAGTG+GGG 0.738884 3_3:+1303040 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATTAGTTAGTAAT+GGG + chr3_3:1297962-1297981 None:intergenic 10.0%
!! TTATATATATTAGTTAGTAA+TGG + chr3_3:1297963-1297982 None:intergenic 10.0%
!!! TTTAAATTTTCAATTCTTAA+TGG - chr3_3:1298326-1298345 Msa0437540:CDS 10.0%
!!! TTAAATTTTCAATTCTTAAT+GGG - chr3_3:1298327-1298346 Msa0437540:CDS 10.0%
!!! TTTTACTTTCAATTTTTAAT+TGG - chr3_3:1298877-1298896 Msa0437540:intron 10.0%
!! ATAATTATCTAATAAAATTG+TGG + chr3_3:1300479-1300498 None:intergenic 10.0%
!! CAAATAAATAAAAAATTATG+TGG + chr3_3:1302178-1302197 None:intergenic 10.0%
!! CATATATAGTATATATTATA+CGG - chr3_3:1303638-1303657 Msa0437540:intron 10.0%
!!! TATTTCTATTATTATTTGGT+TGG + chr3_3:1297721-1297740 None:intergenic 15.0%
!!! CATTTTTTATATGTATTTGA+TGG - chr3_3:1298669-1298688 Msa0437540:intron 15.0%
!! ATAACTATAATAGATTGAAT+CGG - chr3_3:1300529-1300548 Msa0437540:intron 15.0%
!!! CTCAGATTTTTATTAATTAA+TGG + chr3_3:1300658-1300677 None:intergenic 15.0%
!! CATTAATTAATAAAAATCTG+AGG - chr3_3:1300656-1300675 Msa0437540:CDS 15.0%
!! AGATTATTGAATAAAGAATA+AGG + chr3_3:1301055-1301074 None:intergenic 15.0%
!! TTCTTTATTCAATAATCTTT+AGG - chr3_3:1301057-1301076 Msa0437540:intron 15.0%
!!! TTACTATTACTTTTATATGA+GGG - chr3_3:1301208-1301227 Msa0437540:intron 15.0%
!! TATATAGTAACAACAATATT+CGG + chr3_3:1301438-1301457 None:intergenic 15.0%
!!! TATTTTATTTAAATCTCTGT+GGG - chr3_3:1301530-1301549 Msa0437540:intron 15.0%
!!! TGTATTCTTTTGATATTTAT+AGG - chr3_3:1301583-1301602 Msa0437540:intron 15.0%
!!! TTTCTTTAGAAATATACATT+GGG + chr3_3:1302494-1302513 None:intergenic 15.0%
!!! ATTTCTTTAGAAATATACAT+TGG + chr3_3:1302495-1302514 None:intergenic 15.0%
!! TTATATAAATAATTATGCCA+TGG - chr3_3:1302718-1302737 Msa0437540:intron 15.0%
!! TATCATTCATGTAAAATATA+GGG + chr3_3:1302925-1302944 None:intergenic 15.0%
!! TAATTCATTAGTTACTTATT+TGG - chr3_3:1303313-1303332 Msa0437540:intron 15.0%
!! TTATTTGGAAAACAAATTAA+AGG - chr3_3:1303328-1303347 Msa0437540:intron 15.0%
!! GATTGAATTGAATTATGTAA+CGG + chr3_3:1297688-1297707 None:intergenic 20.0%
!! TATGTTTATTGAATATTGCA+TGG - chr3_3:1297771-1297790 Msa0437540:three_prime_UTR 20.0%
!! TTATTTATTCATTTCCCATT+TGG + chr3_3:1297871-1297890 None:intergenic 20.0%
!!! TTTGATTGATTTATTGGAAA+TGG - chr3_3:1298050-1298069 Msa0437540:CDS 20.0%
!! AAGTTTAAAGAGAAAAAAGA+AGG + chr3_3:1298291-1298310 None:intergenic 20.0%
!! GATAATAAACAATCAAGTAT+TGG + chr3_3:1298648-1298667 None:intergenic 20.0%
!!! TACTTTCAATTTTTAATTGG+TGG - chr3_3:1298880-1298899 Msa0437540:intron 20.0%
!! AATGATAAGAAGAAAATTAG+AGG - chr3_3:1299563-1299582 Msa0437540:intron 20.0%
!! ATGATAAGAAGAAAATTAGA+GGG - chr3_3:1299564-1299583 Msa0437540:intron 20.0%
!! AGAATAACCAAAATATTCAT+GGG + chr3_3:1299661-1299680 None:intergenic 20.0%
!! TAGAATAACCAAAATATTCA+TGG + chr3_3:1299662-1299681 None:intergenic 20.0%
!! GTTGAACTAATAAATGTTAT+TGG - chr3_3:1300153-1300172 Msa0437540:intron 20.0%
!! ATAAAAAGAAAGAATATCGA+CGG + chr3_3:1300255-1300274 None:intergenic 20.0%
!! CTTATTAATAACTCAATACT+TGG + chr3_3:1300897-1300916 None:intergenic 20.0%
!!! ATGTTTATTGTCTTATGTTT+TGG - chr3_3:1301017-1301036 Msa0437540:intron 20.0%
!! TTCAAACTTTATGTTCTTTA+AGG - chr3_3:1301088-1301107 Msa0437540:intron 20.0%
!!! GTTACTATTACTTTTATATG+AGG - chr3_3:1301207-1301226 Msa0437540:intron 20.0%
!!! ATATTGTTGTTACTATATAC+AGG - chr3_3:1301439-1301458 Msa0437540:intron 20.0%
!!! GTATTTTATTTAAATCTCTG+TGG - chr3_3:1301529-1301548 Msa0437540:intron 20.0%
!! CAAAAGAATACAAATTACAA+TGG + chr3_3:1301575-1301594 None:intergenic 20.0%
!!! ATTCTTTTGATATTTATAGG+AGG - chr3_3:1301586-1301605 Msa0437540:intron 20.0%
!! TTTGTCTCTATTTAATTGAA+TGG - chr3_3:1301700-1301719 Msa0437540:intron 20.0%
!! ATCATACCATAATACTAATT+TGG - chr3_3:1302080-1302099 Msa0437540:intron 20.0%
!! ATATTGCCAAATTAGTATTA+TGG + chr3_3:1302089-1302108 None:intergenic 20.0%
!! CTAGAAATAAATAATGAGAT+GGG + chr3_3:1302304-1302323 None:intergenic 20.0%
!! AAAGTAATATTCATCTAACA+TGG + chr3_3:1302452-1302471 None:intergenic 20.0%
!!! TAAAAGAATGAAAAGGTTTT+AGG + chr3_3:1302551-1302570 None:intergenic 20.0%
!! TTGGTATTAAAAGAATGAAA+AGG + chr3_3:1302558-1302577 None:intergenic 20.0%
!! TAATCAAACTTAAATTACCA+TGG + chr3_3:1302738-1302757 None:intergenic 20.0%
!! ATCATTCATGTAAAATATAG+GGG + chr3_3:1302924-1302943 None:intergenic 20.0%
!! GTATCATTCATGTAAAATAT+AGG + chr3_3:1302926-1302945 None:intergenic 20.0%
!! AGATTTAGGAAAAAAACAAT+CGG + chr3_3:1303255-1303274 None:intergenic 20.0%
!!! ATACTTGATAATAATATGAG+AGG + chr3_3:1303509-1303528 None:intergenic 20.0%
!! TATATAAACATCATTCATGT+GGG + chr3_3:1303599-1303618 None:intergenic 20.0%
! GAGATTAAATTGAATTCGTT+CGG + chr3_3:1297934-1297953 None:intergenic 25.0%
!!! TCCTCTTTTGATTGATTTAT+TGG - chr3_3:1298044-1298063 Msa0437540:CDS 25.0%
! TCCAATAAATCAATCAAAAG+AGG + chr3_3:1298048-1298067 None:intergenic 25.0%
! ATCATTAACAGGTAAGATTA+GGG + chr3_3:1298160-1298179 None:intergenic 25.0%
! TATCATTAACAGGTAAGATT+AGG + chr3_3:1298161-1298180 None:intergenic 25.0%
!!! CACTTTTTATGTGTATTTGT+TGG - chr3_3:1298368-1298387 Msa0437540:CDS 25.0%
! ATGTAGTAATTTGAGAAAAC+TGG + chr3_3:1298562-1298581 None:intergenic 25.0%
! TGATGTTGAGGATAATAAAA+AGG - chr3_3:1298990-1299009 Msa0437540:intron 25.0%
! GATGTTGAGGATAATAAAAA+GGG - chr3_3:1298991-1299010 Msa0437540:intron 25.0%
! ATACTCATAACAATTACATG+TGG + chr3_3:1299210-1299229 None:intergenic 25.0%
! CAATAACCATTACAATTACA+TGG + chr3_3:1299249-1299268 None:intergenic 25.0%
! CATGTAATTGTAATGGTTAT+TGG - chr3_3:1299247-1299266 Msa0437540:CDS 25.0%
! TAATCAATGACAATCAGATT+TGG + chr3_3:1299399-1299418 None:intergenic 25.0%
!! GTTTAAGATCTAAATCAAAC+AGG - chr3_3:1299432-1299451 Msa0437540:intron 25.0%
!! AATTTTCCCCATGAATATTT+TGG - chr3_3:1299651-1299670 Msa0437540:intron 25.0%
! GAATAACCAAAATATTCATG+GGG + chr3_3:1299660-1299679 None:intergenic 25.0%
!!! ATTCTAGAGCAAATATTGAA+AGG - chr3_3:1299676-1299695 Msa0437540:intron 25.0%
! TTATTAGTTCAACTATGTTG+TGG + chr3_3:1300146-1300165 None:intergenic 25.0%
!! AAACTTTATGTTCTTTAAGG+CGG - chr3_3:1301091-1301110 Msa0437540:intron 25.0%
! ACTAAAACAACATGGAAATT+AGG + chr3_3:1301168-1301187 None:intergenic 25.0%
! TTTATATGAGGGTTTATACT+AGG - chr3_3:1301219-1301238 Msa0437540:intron 25.0%
! TTTATGACTTTAAACTTGCA+AGG - chr3_3:1301361-1301380 Msa0437540:intron 25.0%
! AAGTATTAAATGGTATGTTG+TGG - chr3_3:1301768-1301787 Msa0437540:intron 25.0%
! ATACTAATTTGGCAATATTG+TGG - chr3_3:1302091-1302110 Msa0437540:intron 25.0%
! CAAGATAAAAAATACTGCTT+GGG + chr3_3:1302201-1302220 None:intergenic 25.0%
! ACAAGATAAAAAATACTGCT+TGG + chr3_3:1302202-1302221 None:intergenic 25.0%
! CCTAGAAATAAATAATGAGA+TGG + chr3_3:1302305-1302324 None:intergenic 25.0%
!! CCATCTCATTATTTATTTCT+AGG - chr3_3:1302302-1302321 Msa0437540:intron 25.0%
! CATCTTACTATTGTTAACAT+TGG - chr3_3:1302596-1302615 Msa0437540:intron 25.0%
! TACTATTTGAGAGAGAAAAA+TGG + chr3_3:1302632-1302651 None:intergenic 25.0%
! AGTAAGCATGAATTTAAACA+CGG - chr3_3:1302648-1302667 Msa0437540:intron 25.0%
! TCATTCATGTAAAATATAGG+GGG + chr3_3:1302923-1302942 None:intergenic 25.0%
!! GTTAAATTTTGTCAATTGTC+TGG - chr3_3:1303171-1303190 Msa0437540:CDS 25.0%
!!! GTTTTAGAATATTGAGTGAT+TGG + chr3_3:1303200-1303219 None:intergenic 25.0%
! AAACTAAAAGAAACTTCCTA+TGG - chr3_3:1303216-1303235 Msa0437540:intron 25.0%
! GAACTTAGTATGAAAGATTT+AGG + chr3_3:1303269-1303288 None:intergenic 25.0%
! TGAATTACTTCTGATGTAAA+AGG + chr3_3:1303300-1303319 None:intergenic 25.0%
! TTTGGAAAACAAATTAAAGG+AGG - chr3_3:1303331-1303350 Msa0437540:intron 25.0%
! GTATATAAACATCATTCATG+TGG + chr3_3:1303600-1303619 None:intergenic 25.0%
! ATAGAAACCTATGAATTTGT+AGG + chr3_3:1303685-1303704 None:intergenic 25.0%
!! ATATTGTCTTTAATTTCTGG+AGG + chr3_3:1304036-1304055 None:intergenic 25.0%
!! GGAATATTGTCTTTAATTTC+TGG + chr3_3:1304039-1304058 None:intergenic 25.0%
!!! ATATTTTGAGCTAATATAGC+CGG + chr3_3:1304236-1304255 None:intergenic 25.0%
! AACACAAATAATCATGTCAT+GGG + chr3_3:1304295-1304314 None:intergenic 25.0%
! GCATGGTGATTTGATTTAAT+AGG - chr3_3:1297788-1297807 Msa0437540:three_prime_UTR 30.0%
! TGGTGATTTGATTTAATAGG+AGG - chr3_3:1297791-1297810 Msa0437540:three_prime_UTR 30.0%
!!! TCTTTCCTTGTTTTGTTTAC+GGG + chr3_3:1297818-1297837 None:intergenic 30.0%
!!! CTCTTTCCTTGTTTTGTTTA+CGG + chr3_3:1297819-1297838 None:intergenic 30.0%
AACAAAACAAGGAAAGAGTT+AGG - chr3_3:1297821-1297840 Msa0437540:three_prime_UTR 30.0%
ACAAAACAAGGAAAGAGTTA+GGG - chr3_3:1297822-1297841 Msa0437540:three_prime_UTR 30.0%
TTATTCATTTCCCATTTGGA+TGG + chr3_3:1297867-1297886 None:intergenic 30.0%
! GATTGATTTATTGGAAATGG+CGG - chr3_3:1298053-1298072 Msa0437540:CDS 30.0%
! ATTGATTTATTGGAAATGGC+GGG - chr3_3:1298054-1298073 Msa0437540:CDS 30.0%
ACACTGATACTATCATTAAC+AGG + chr3_3:1298171-1298190 None:intergenic 30.0%
! TGTGTATTTGTTGGATTCAT+TGG - chr3_3:1298377-1298396 Msa0437540:CDS 30.0%
! TGAGTTTTTCTCGAATTCAT+TGG - chr3_3:1298481-1298500 Msa0437540:intron 30.0%
TTATGAGTATGCCAACAAAT+TGG - chr3_3:1299220-1299239 Msa0437540:CDS 30.0%
TTACATGGAATCCAATTTGT+TGG + chr3_3:1299234-1299253 None:intergenic 30.0%
TGGATTCCATGTAATTGTAA+TGG - chr3_3:1299240-1299259 Msa0437540:CDS 30.0%
TAATTGTAATGGTTATTGGC+CGG - chr3_3:1299251-1299270 Msa0437540:CDS 30.0%
CATAAGTTTGAGCATAATGT+GGG - chr3_3:1299351-1299370 Msa0437540:intron 30.0%
AGTTGCATGTTACAAGAAAT+AGG - chr3_3:1299472-1299491 Msa0437540:intron 30.0%
TGTTACAAGAAATAGGTTTG+AGG - chr3_3:1299479-1299498 Msa0437540:intron 30.0%
TAAGAAGAAAATTAGAGGGA+AGG - chr3_3:1299568-1299587 Msa0437540:intron 30.0%
AAGAAGAAAATTAGAGGGAA+GGG - chr3_3:1299569-1299588 Msa0437540:intron 30.0%
TTATCTCATTATCCAAACTC+AGG - chr3_3:1299614-1299633 Msa0437540:intron 30.0%
TTCATGAATAAACTTTGACC+AGG - chr3_3:1299702-1299721 Msa0437540:intron 30.0%
!! ATATTGGCCTTGGATAATAA+AGG - chr3_3:1299773-1299792 Msa0437540:CDS 30.0%
!! TATTGGCCTTGGATAATAAA+GGG - chr3_3:1299774-1299793 Msa0437540:CDS 30.0%
CTTGTGTAAAAAACATGGTA+AGG - chr3_3:1299870-1299889 Msa0437540:intron 30.0%
! ACTTGTCTTTTTATGAGTGT+TGG + chr3_3:1300102-1300121 None:intergenic 30.0%
ATTCAACACATCAGATTCTA+AGG + chr3_3:1300449-1300468 None:intergenic 30.0%
ACTATAATAGATTGAATCGG+TGG - chr3_3:1300532-1300551 Msa0437540:intron 30.0%
! ATTTGTTTCGGGTACATAAT+CGG - chr3_3:1300557-1300576 Msa0437540:intron 30.0%
!!! TTCTTGTGGTTTTGTCTTTA+TGG - chr3_3:1300740-1300759 Msa0437540:intron 30.0%
ATCTAAACCGTGTATTAGAT+TGG - chr3_3:1300785-1300804 Msa0437540:intron 30.0%
CTCAATTATGGCTACAAATA+CGG + chr3_3:1300871-1300890 None:intergenic 30.0%
GTATTTGTAGCCATAATTGA+GGG - chr3_3:1300870-1300889 Msa0437540:intron 30.0%
!! CTTATGTTTTGGATTCATAG+AGG - chr3_3:1301028-1301047 Msa0437540:intron 30.0%
CTACTGTAACTAAAACAACA+TGG + chr3_3:1301176-1301195 None:intergenic 30.0%
!!! TTGTTTTAGTTACAGTAGCA+TGG - chr3_3:1301178-1301197 Msa0437540:intron 30.0%
TGATATTTATAGGAGGAGAA+TGG - chr3_3:1301593-1301612 Msa0437540:intron 30.0%
!! ACTTGTTATTGTTATTGCTG+TGG - chr3_3:1301664-1301683 Msa0437540:intron 30.0%
TATGTGAAGCTCATATATTC+TGG - chr3_3:1301798-1301817 Msa0437540:intron 30.0%
!! TTGCCTTGTTATTCTCTAAT+AGG - chr3_3:1301871-1301890 Msa0437540:intron 30.0%
TTTGCTTCCTAATGTGTTAA+TGG - chr3_3:1302128-1302147 Msa0437540:intron 30.0%
! AATGTGATAATGTAGATCCA+TGG + chr3_3:1302254-1302273 None:intergenic 30.0%
!! TTTATTTCTAGGTTAGCTCT+CGG - chr3_3:1302313-1302332 Msa0437540:intron 30.0%
!!! GAAAAGGTTTTAGGAAAAGA+GGG + chr3_3:1302542-1302561 None:intergenic 30.0%
!!! TGAAAAGGTTTTAGGAAAAG+AGG + chr3_3:1302543-1302562 None:intergenic 30.0%
TAGTAAGATGCTTGAAAGTA+GGG + chr3_3:1302586-1302605 None:intergenic 30.0%
ATAGTAAGATGCTTGAAAGT+AGG + chr3_3:1302587-1302606 None:intergenic 30.0%
TTTCTCATTTGAACCACAAT+AGG - chr3_3:1302775-1302794 Msa0437540:intron 30.0%
GTGAAAAAGATGCAAAATCA+CGG + chr3_3:1302847-1302866 None:intergenic 30.0%
CAACTATTCTATTTCACTTC+AGG - chr3_3:1303044-1303063 Msa0437540:CDS 30.0%
AAGAAAGTAATTCAAACCTG+TGG + chr3_3:1303112-1303131 None:intergenic 30.0%
ACAGGTTTGAATTACTTTCT+TGG - chr3_3:1303111-1303130 Msa0437540:CDS 30.0%
AATTGACAAAATTTAACCCC+AGG + chr3_3:1303168-1303187 None:intergenic 30.0%
CGGATATTATAAAACACCAT+AGG + chr3_3:1303235-1303254 None:intergenic 30.0%
TTAAACCTTTACTCCATAAC+TGG - chr3_3:1303541-1303560 Msa0437540:intron 30.0%
! GGGTATTATATGCATTTTCA+GGG + chr3_3:1303579-1303598 None:intergenic 30.0%
! TGGGTATTATATGCATTTTC+AGG + chr3_3:1303580-1303599 None:intergenic 30.0%
! GTTTATATACACAGCTTGTT+TGG - chr3_3:1303610-1303629 Msa0437540:intron 30.0%
ACTAACACCTACAAATTCAT+AGG - chr3_3:1303675-1303694 Msa0437540:intron 30.0%
AAGCAACTTCTGAATCAAAA+GGG + chr3_3:1303803-1303822 None:intergenic 30.0%
AAAGCAACTTCTGAATCAAA+AGG + chr3_3:1303804-1303823 None:intergenic 30.0%
!!! AACAGGTGCTTTTTAAGTTT+TGG - chr3_3:1303853-1303872 Msa0437540:intron 30.0%
! TATTCCATCACAAAAGTACA+AGG - chr3_3:1304053-1304072 Msa0437540:exon 30.0%
! ATTCCATCACAAAAGTACAA+GGG - chr3_3:1304054-1304073 Msa0437540:exon 30.0%
! ATTTCCCATGTACCTTATTT+GGG + chr3_3:1304174-1304193 None:intergenic 30.0%
TATTTCCCATGTACCTTATT+TGG + chr3_3:1304175-1304194 None:intergenic 30.0%
ATGAAGAATAGATCAACCAT+GGG + chr3_3:1304200-1304219 None:intergenic 30.0%
AATGAAGAATAGATCAACCA+TGG + chr3_3:1304201-1304220 None:intergenic 30.0%
TGGTTGATCTATTCTTCATT+AGG - chr3_3:1304201-1304220 Msa0437540:five_prime_UTR 30.0%
GAACACAAATAATCATGTCA+TGG + chr3_3:1304296-1304315 None:intergenic 30.0%
AAAAACAGAAACTGTGAACT+TGG + chr3_3:1304322-1304341 None:intergenic 30.0%
GCTCAGGAGAATTAAATTAA+AGG + chr3_3:1304439-1304458 None:intergenic 30.0%
AGAAGAGAATCCATCCAAAT+GGG - chr3_3:1297854-1297873 Msa0437540:three_prime_UTR 35.0%
ATACTTGATCACAGCAATGT+TGG + chr3_3:1298118-1298137 None:intergenic 35.0%
ACATTGCTGTGATCAAGTAT+TGG - chr3_3:1298118-1298137 Msa0437540:CDS 35.0%
CATTGCTGTGATCAAGTATT+GGG - chr3_3:1298119-1298138 Msa0437540:CDS 35.0%
! ATTGCTGTGATCAAGTATTG+GGG - chr3_3:1298120-1298139 Msa0437540:CDS 35.0%
AAAGGAAGGACTAACAGAAA+CGG + chr3_3:1298229-1298248 None:intergenic 35.0%
ATACGATCTTGTTGAAAGGA+AGG + chr3_3:1298243-1298262 None:intergenic 35.0%
!! AACAAGCACTGACAAATACA+CGG + chr3_3:1298459-1298478 None:intergenic 35.0%
!! ATGAAGCACTGAAACATACA+TGG + chr3_3:1298748-1298767 None:intergenic 35.0%
GTCTACTACTTGCTTGTTTA+TGG - chr3_3:1298777-1298796 Msa0437540:intron 35.0%
! TTGGTGGAATTTCGTTTTGT+CGG - chr3_3:1298896-1298915 Msa0437540:intron 35.0%
GTGTAGGAAATTTCTCTTTC+CGG - chr3_3:1298922-1298941 Msa0437540:intron 35.0%
TGTAGGAAATTTCTCTTTCC+GGG - chr3_3:1298923-1298942 Msa0437540:intron 35.0%
AAGATTCCAGAGCTGTTTAA+GGG - chr3_3:1298948-1298967 Msa0437540:intron 35.0%
!! AAAGGGTATTAAGATCACCA+AGG - chr3_3:1299008-1299027 Msa0437540:intron 35.0%
GTGAAAGACTACACAAATAC+CGG + chr3_3:1299273-1299292 None:intergenic 35.0%
AGATTTCGCAATTTGAGAAC+TGG + chr3_3:1299295-1299314 None:intergenic 35.0%
CCACATTATGCTCAAACTTA+TGG + chr3_3:1299353-1299372 None:intergenic 35.0%
CCATAAGTTTGAGCATAATG+TGG - chr3_3:1299350-1299369 Msa0437540:intron 35.0%
TCAATGACAATCAGATTTGG+TGG + chr3_3:1299396-1299415 None:intergenic 35.0%
TGCAACTTCAAATCTAATCC+AGG + chr3_3:1299459-1299478 None:intergenic 35.0%
AGAAATAGGTTTGAGGATCT+TGG - chr3_3:1299486-1299505 Msa0437540:intron 35.0%
ATCTTGGAATTGTTCGAAGT+AGG - chr3_3:1299502-1299521 Msa0437540:intron 35.0%
TGATGTGCCATAATAGGATT+GGG + chr3_3:1299528-1299547 None:intergenic 35.0%
CTTATCATTCTGTCTTAGTC+TGG + chr3_3:1299552-1299571 None:intergenic 35.0%
CCACCAAGAAAACAAAATCA+CGG - chr3_3:1299726-1299745 Msa0437540:intron 35.0%
CACCAAGAAAACAAAATCAC+GGG - chr3_3:1299727-1299746 Msa0437540:intron 35.0%
GATAGATTTCCAGTGGATAT+TGG - chr3_3:1299757-1299776 Msa0437540:CDS 35.0%
!! ATTGGCCTTGGATAATAAAG+GGG - chr3_3:1299775-1299794 Msa0437540:CDS 35.0%
TAAAGTTGTTGTCATGTGAC+TGG - chr3_3:1299815-1299834 Msa0437540:intron 35.0%
AGGCTCTTGTGTAAAAAACA+TGG - chr3_3:1299865-1299884 Msa0437540:intron 35.0%
TCATCCGAGTCCAATAAAAA+GGG + chr3_3:1299970-1299989 None:intergenic 35.0%
ATCATCCGAGTCCAATAAAA+AGG + chr3_3:1299971-1299990 None:intergenic 35.0%
TATTGGACTCGGATGATAAT+TGG - chr3_3:1299974-1299993 Msa0437540:intron 35.0%
AATACCATACAACGCAATTG+AGG + chr3_3:1300000-1300019 None:intergenic 35.0%
CGTTGTATGGTATTTGTAGT+TGG - chr3_3:1300006-1300025 Msa0437540:intron 35.0%
CACTACAATTGAATCCACAA+TGG + chr3_3:1300215-1300234 None:intergenic 35.0%
AAAAGAAAGAATATCGACGG+CGG + chr3_3:1300252-1300271 None:intergenic 35.0%
GATTATGTACCCGAAACAAA+TGG + chr3_3:1300558-1300577 None:intergenic 35.0%
!!! TTTGGCTTTTCACATTCTTG+TGG - chr3_3:1300726-1300745 Msa0437540:intron 35.0%
!!! TTGTGGTTTTGTCTTTATGG+AGG - chr3_3:1300743-1300762 Msa0437540:intron 35.0%
AAACCGTGTATTAGATTGGA+TGG - chr3_3:1300789-1300808 Msa0437540:intron 35.0%
CGTATTTGTAGCCATAATTG+AGG - chr3_3:1300869-1300888 Msa0437540:intron 35.0%
AATACTTGGTCCCTCAATTA+TGG + chr3_3:1300883-1300902 None:intergenic 35.0%
ATGAATAAATCTGTCTGTCC+AGG + chr3_3:1300991-1301010 None:intergenic 35.0%
GTTGTTACTATATACAGGCA+AGG - chr3_3:1301444-1301463 Msa0437540:intron 35.0%
GGATTTGTGAAGTGGAAAAT+GGG - chr3_3:1301498-1301517 Msa0437540:intron 35.0%
AGAGCTTGAGAGAAAGAAAT+GGG + chr3_3:1301834-1301853 None:intergenic 35.0%
AAGAGCTTGAGAGAAAGAAA+TGG + chr3_3:1301835-1301854 None:intergenic 35.0%
!!! CTCTCAAGCTCTTTTTAAGT+TGG - chr3_3:1301842-1301861 Msa0437540:intron 35.0%
TCGCCTATTAGAGAATAACA+AGG + chr3_3:1301877-1301896 None:intergenic 35.0%
! TTGTTATTCTCTAATAGGCG+AGG - chr3_3:1301876-1301895 Msa0437540:intron 35.0%
CATTTGGCCATTAACACATT+AGG + chr3_3:1302138-1302157 None:intergenic 35.0%
CTAATGTGTTAATGGCCAAA+TGG - chr3_3:1302136-1302155 Msa0437540:intron 35.0%
TTGATACACAAATTGCACGA+AGG + chr3_3:1302429-1302448 None:intergenic 35.0%
TTTGGCACTATTTCCTATTG+TGG + chr3_3:1302791-1302810 None:intergenic 35.0%
AATAGGAAATAGTGCCAAAG+AGG - chr3_3:1302792-1302811 Msa0437540:intron 35.0%
! TCCATTTTCAGTATCCTCTT+TGG + chr3_3:1302809-1302828 None:intergenic 35.0%
ACATGAATGATACATCCCAT+AGG - chr3_3:1302933-1302952 Msa0437540:intron 35.0%
AATTATCAGAGCCTACCTAT+GGG + chr3_3:1302951-1302970 None:intergenic 35.0%
TAATCAGCATTGTTGACAAG+TGG - chr3_3:1303068-1303087 Msa0437540:CDS 35.0%
ATATATGTCTCGTATGCAGA+AGG - chr3_3:1303136-1303155 Msa0437540:CDS 35.0%
TATGCAGAAGGTTTATTCCT+GGG - chr3_3:1303148-1303167 Msa0437540:CDS 35.0%
CATATCAATGTTCACAGAAC+TGG + chr3_3:1303368-1303387 None:intergenic 35.0%
GACATTACTGGCATTCAATT+CGG + chr3_3:1303399-1303418 None:intergenic 35.0%
CACTTGATTGAAGACATTAC+TGG + chr3_3:1303411-1303430 None:intergenic 35.0%
AAACTCCAGTTATGGAGTAA+AGG + chr3_3:1303549-1303568 None:intergenic 35.0%
!! ATATGCATTTTCAGGGACAT+AGG + chr3_3:1303572-1303591 None:intergenic 35.0%
TAGCTTATACGTTTGATGCA+GGG - chr3_3:1303737-1303756 Msa0437540:intron 35.0%
!! AACTTAAAAAGCACCTGTTG+AGG + chr3_3:1303852-1303871 None:intergenic 35.0%
TCACCAATAATGTAACTGGA+GGG + chr3_3:1303952-1303971 None:intergenic 35.0%
CTTGTCACCAATAATGTAAC+TGG + chr3_3:1303956-1303975 None:intergenic 35.0%
AAGTCAATTGCAAAAGATGC+TGG - chr3_3:1303973-1303992 Msa0437540:CDS 35.0%
AGTCAATTGCAAAAGATGCT+GGG - chr3_3:1303974-1303993 Msa0437540:CDS 35.0%
! TTGTCTTTAATTTCTGGAGG+TGG + chr3_3:1304033-1304052 None:intergenic 35.0%
! TTCCATCACAAAAGTACAAG+GGG - chr3_3:1304055-1304074 Msa0437540:exon 35.0%
CTCTTCTCAACAGTGAAAAT+GGG - chr3_3:1304145-1304164 Msa0437540:five_prime_UTR 35.0%
TTTCTTAGATGACCCTTTCA+AGG - chr3_3:1304257-1304276 Msa0437540:five_prime_UTR 35.0%
TGCTCAATTCAATACAGGAA+AGG + chr3_3:1304416-1304435 None:intergenic 35.0%
!! AAAGGTGCTCAATTCAATAC+AGG + chr3_3:1304421-1304440 None:intergenic 35.0%
AACAAGGAAAGAGTTAGGGT+AGG - chr3_3:1297826-1297845 Msa0437540:three_prime_UTR 40.0%
GAGAAGAGAATCCATCCAAA+TGG - chr3_3:1297853-1297872 Msa0437540:three_prime_UTR 40.0%
CTGAGTAACAGATCTAAGTG+AGG + chr3_3:1298015-1298034 None:intergenic 40.0%
TTGATCACAGCAATGTTGGT+TGG + chr3_3:1298114-1298133 None:intergenic 40.0%
CCACATACGATCTTGTTGAA+AGG + chr3_3:1298247-1298266 None:intergenic 40.0%
CCTTTCAACAAGATCGTATG+TGG - chr3_3:1298244-1298263 Msa0437540:intron 40.0%
ATGAAGCACAGACACATACA+CGG + chr3_3:1298613-1298632 None:intergenic 40.0%
!! TTCGTTTTGTCGGTTAGTGT+AGG - chr3_3:1298906-1298925 Msa0437540:intron 40.0%
GTAGGAAATTTCTCTTTCCG+GGG - chr3_3:1298924-1298943 Msa0437540:intron 40.0%
TAGGAAATTTCTCTTTCCGG+GGG - chr3_3:1298925-1298944 Msa0437540:intron 40.0%
GAAGATTCCAGAGCTGTTTA+AGG - chr3_3:1298947-1298966 Msa0437540:intron 40.0%
TTAAGATCACCAAGGAGGAT+TGG - chr3_3:1299016-1299035 Msa0437540:intron 40.0%
GATCTAAATCAAACAGGTCC+TGG - chr3_3:1299438-1299457 Msa0437540:intron 40.0%
AAGTAGGCCCAATCCTATTA+TGG - chr3_3:1299518-1299537 Msa0437540:intron 40.0%
CTGATGTGCCATAATAGGAT+TGG + chr3_3:1299529-1299548 None:intergenic 40.0%
! TGAAGTCGATTTCCTGAGTT+TGG + chr3_3:1299629-1299648 None:intergenic 40.0%
!!! TTTTGTTTTCTTGGTGGACC+TGG + chr3_3:1299723-1299742 None:intergenic 40.0%
!!! CCGTGATTTTGTTTTCTTGG+TGG + chr3_3:1299729-1299748 None:intergenic 40.0%
!!! TGCCCGTGATTTTGTTTTCT+TGG + chr3_3:1299732-1299751 None:intergenic 40.0%
!! TTGGCCTTGGATAATAAAGG+GGG - chr3_3:1299776-1299795 Msa0437540:CDS 40.0%
ACAACTTTACCTTTGCACCA+AGG + chr3_3:1299804-1299823 None:intergenic 40.0%
! TTACACAAGAGCCTGTTTTC+AGG + chr3_3:1299859-1299878 None:intergenic 40.0%
TTCTATGACTGCAGCTAATC+TGG + chr3_3:1300034-1300053 None:intergenic 40.0%
TGAATCCACAATGGTGAGAA+CGG + chr3_3:1300206-1300225 None:intergenic 40.0%
!! AAAGAGAAGATTGGTGATGG+CGG + chr3_3:1300307-1300326 None:intergenic 40.0%
GAGAAAGAGAAGATTGGTGA+TGG + chr3_3:1300310-1300329 None:intergenic 40.0%
GAGAGTGAGAAAGAGAAGAT+TGG + chr3_3:1300316-1300335 None:intergenic 40.0%
ACTTCTGGTGTCTGGAAATT+TGG - chr3_3:1300708-1300727 Msa0437540:intron 40.0%
CCACCATCCAATCTAATACA+CGG + chr3_3:1300795-1300814 None:intergenic 40.0%
GATTCACTGCAGTTAGTGAA+AGG + chr3_3:1300843-1300862 None:intergenic 40.0%
!! TACATGGCGGAGTATTGAAT+TGG + chr3_3:1300959-1300978 None:intergenic 40.0%
CAGGAAAAAGTTCTACATGG+CGG + chr3_3:1300972-1300991 None:intergenic 40.0%
GTCCAGGAAAAAGTTCTACA+TGG + chr3_3:1300975-1300994 None:intergenic 40.0%
AGTTACAGTAGCATGGTTCT+TGG - chr3_3:1301185-1301204 Msa0437540:intron 40.0%
! TGTTTTGCAGTTTATGCCCT+GGG - chr3_3:1301275-1301294 Msa0437540:intron 40.0%
! ACTTGCAAGGTGTTATGACT+TGG - chr3_3:1301374-1301393 Msa0437540:intron 40.0%
!! CAAGGTGTTATGACTTGGTT+TGG - chr3_3:1301379-1301398 Msa0437540:intron 40.0%
ACTATATACAGGCAAGGATC+AGG - chr3_3:1301450-1301469 Msa0437540:intron 40.0%
AGTGCTTGTCGTAGCTTATT+TGG - chr3_3:1301474-1301493 Msa0437540:intron 40.0%
GTGCTTGTCGTAGCTTATTT+GGG - chr3_3:1301475-1301494 Msa0437540:intron 40.0%
TGCTTGTCGTAGCTTATTTG+GGG - chr3_3:1301476-1301495 Msa0437540:intron 40.0%
TATTTGGGGGATTTGTGAAG+TGG - chr3_3:1301490-1301509 Msa0437540:intron 40.0%
GGGATTTGTGAAGTGGAAAA+TGG - chr3_3:1301497-1301516 Msa0437540:intron 40.0%
! GAATGGAAGTGATAGTCTTG+CGG - chr3_3:1301610-1301629 Msa0437540:intron 40.0%
! GAGAGTCGACTTCAAATCAA+AGG + chr3_3:1301926-1301945 None:intergenic 40.0%
TCCATTTCATCTAAGCACCA+TGG - chr3_3:1302234-1302253 Msa0437540:intron 40.0%
TCCATGGTGCTTAGATGAAA+TGG + chr3_3:1302238-1302257 None:intergenic 40.0%
! GCTTTTACAGCATAGAGCAA+AGG - chr3_3:1302389-1302408 Msa0437540:intron 40.0%
CACAAATTGCACGAAGGAAA+GGG + chr3_3:1302423-1302442 None:intergenic 40.0%
ACACAAATTGCACGAAGGAA+AGG + chr3_3:1302424-1302443 None:intergenic 40.0%
!!! AGGTTTTAGGAAAAGAGGGA+GGG + chr3_3:1302538-1302557 None:intergenic 40.0%
!!! AAGGTTTTAGGAAAAGAGGG+AGG + chr3_3:1302539-1302558 None:intergenic 40.0%
TAAGATGCTTGAAAGTAGGG+AGG + chr3_3:1302583-1302602 None:intergenic 40.0%
GCCAAAGAGGATACTGAAAA+TGG - chr3_3:1302805-1302824 Msa0437540:intron 40.0%
TGCAAAATCACGGTTTCGAA+TGG + chr3_3:1302837-1302856 None:intergenic 40.0%
TGCATGAAACTGGTTGCTAT+CGG + chr3_3:1302882-1302901 None:intergenic 40.0%
GAATGATACATCCCATAGGT+AGG - chr3_3:1302937-1302956 Msa0437540:intron 40.0%
CAATTATCAGAGCCTACCTA+TGG + chr3_3:1302952-1302971 None:intergenic 40.0%
GTATGCAGAAGGTTTATTCC+TGG - chr3_3:1303147-1303166 Msa0437540:CDS 40.0%
ATGCAGAAGGTTTATTCCTG+GGG - chr3_3:1303149-1303168 Msa0437540:CDS 40.0%
ATGCACTTCATCACATTAGC+TGG + chr3_3:1303441-1303460 None:intergenic 40.0%
GACATAGGAAACTCCAGTTA+TGG + chr3_3:1303557-1303576 None:intergenic 40.0%
!!! AACTTCTAGTTTTGACGTGC+AGG - chr3_3:1303714-1303733 Msa0437540:intron 40.0%
GTAGCTTATACGTTTGATGC+AGG - chr3_3:1303736-1303755 Msa0437540:intron 40.0%
! CGGTTCTAATTGCACGTAAT+AGG - chr3_3:1303767-1303786 Msa0437540:intron 40.0%
TGAGGTCATCTGAATTTGGA+GGG + chr3_3:1303834-1303853 None:intergenic 40.0%
TTGAGGTCATCTGAATTTGG+AGG + chr3_3:1303835-1303854 None:intergenic 40.0%
CTGTTGAGGTCATCTGAATT+TGG + chr3_3:1303838-1303857 None:intergenic 40.0%
CAAATTCAGATGACCTCAAC+AGG - chr3_3:1303836-1303855 Msa0437540:intron 40.0%
CTTCCCTCCAGTTACATTAT+TGG - chr3_3:1303946-1303965 Msa0437540:CDS 40.0%
GTCACCAATAATGTAACTGG+AGG + chr3_3:1303953-1303972 None:intergenic 40.0%
! TCTTTAATTTCTGGAGGTGG+TGG + chr3_3:1304030-1304049 None:intergenic 40.0%
! TCCATCACAAAAGTACAAGG+GGG - chr3_3:1304056-1304075 Msa0437540:exon 40.0%
TACTTTATATGCACCAGACC+AGG - chr3_3:1304087-1304106 Msa0437540:five_prime_UTR 40.0%
CTTTCATCAGTAAGCACAAC+AGG + chr3_3:1304120-1304139 None:intergenic 40.0%
GCTCTTCTCAACAGTGAAAA+TGG - chr3_3:1304144-1304163 Msa0437540:five_prime_UTR 40.0%
! GAAAATGGGCTTCCCAAATA+AGG - chr3_3:1304159-1304178 Msa0437540:five_prime_UTR 40.0%
GCTTCCCAAATAAGGTACAT+GGG - chr3_3:1304167-1304186 Msa0437540:five_prime_UTR 40.0%
GTACATGGGAAATATTCCCA+TGG - chr3_3:1304181-1304200 Msa0437540:five_prime_UTR 40.0%
CTTCATTAGGCTTATCTGTC+CGG - chr3_3:1304214-1304233 Msa0437540:five_prime_UTR 40.0%
TACAACAGGCTTCCTTGAAA+GGG + chr3_3:1304272-1304291 None:intergenic 40.0%
AATCATGTCATGGGTACAAC+AGG + chr3_3:1304286-1304305 None:intergenic 40.0%
AAGTTGAACTAGCAAAGCTC+AGG + chr3_3:1304455-1304474 None:intergenic 40.0%
GAGGTCCCGTAAACAAAACA+AGG - chr3_3:1297810-1297829 Msa0437540:three_prime_UTR 45.0%
AAGCAGCAGTACAACGAAGA+AGG - chr3_3:1297905-1297924 Msa0437540:three_prime_UTR 45.0%
AGCAGCAGTACAACGAAGAA+GGG - chr3_3:1297906-1297925 Msa0437540:three_prime_UTR 45.0%
ACTAACAGAAACGGTGGTAG+TGG + chr3_3:1298220-1298239 None:intergenic 45.0%
CAAGATCGTATGTGGCTCAA+TGG - chr3_3:1298252-1298271 Msa0437540:intron 45.0%
! GACACTAACACTAGCACTGA+TGG + chr3_3:1298419-1298438 None:intergenic 45.0%
GTTAGTGTCAATGTCCTGTC+TGG - chr3_3:1298430-1298449 Msa0437540:intron 45.0%
GTCAGTATTAGTGTCGTGTC+TGG - chr3_3:1298719-1298738 Msa0437540:intron 45.0%
GGGTATTAAGATCACCAAGG+AGG - chr3_3:1299011-1299030 Msa0437540:intron 45.0%
! CAATTTGCTCCAATCCTCCT+TGG + chr3_3:1299028-1299047 None:intergenic 45.0%
! ATAATGTGGGCTGCATTGCA+TGG - chr3_3:1299364-1299383 Msa0437540:intron 45.0%
! TAATGTGGGCTGCATTGCAT+GGG - chr3_3:1299365-1299384 Msa0437540:intron 45.0%
TCTGGCTGATGTGCCATAAT+AGG + chr3_3:1299534-1299553 None:intergenic 45.0%
CAGTGACGATAGATTTCCAG+TGG - chr3_3:1299750-1299769 Msa0437540:CDS 45.0%
! TTTCCAGTGGATATTGGCCT+TGG - chr3_3:1299763-1299782 Msa0437540:CDS 45.0%
TATCCAAGGCCAATATCCAC+TGG + chr3_3:1299769-1299788 None:intergenic 45.0%
! TGGCCTTGGATAATAAAGGG+GGG - chr3_3:1299777-1299796 Msa0437540:CDS 45.0%
GTTGTTGTCATGTGACTGGA+AGG - chr3_3:1299819-1299838 Msa0437540:intron 45.0%
CAGGTTCAAGTCCTGAAAAC+AGG - chr3_3:1299845-1299864 Msa0437540:intron 45.0%
GCTGCGTACAATTCACCAAT+TGG - chr3_3:1299892-1299911 Msa0437540:intron 45.0%
GCGTACAATTCACCAATTGG+CGG - chr3_3:1299895-1299914 Msa0437540:intron 45.0%
CGTACAATTCACCAATTGGC+GGG - chr3_3:1299896-1299915 Msa0437540:intron 45.0%
CTAAAGCTCCTGCATAAGCA+GGG + chr3_3:1299935-1299954 None:intergenic 45.0%
ACTAAAGCTCCTGCATAAGC+AGG + chr3_3:1299936-1299955 None:intergenic 45.0%
! GCTGCCCTTTTTATTGGACT+CGG - chr3_3:1299963-1299982 Msa0437540:intron 45.0%
TTGGCCTCAATTGCGTTGTA+TGG - chr3_3:1299993-1300012 Msa0437540:intron 45.0%
GTCTAACTGCAGTGACTGTA+GGG + chr3_3:1300057-1300076 None:intergenic 45.0%
TGTCTAACTGCAGTGACTGT+AGG + chr3_3:1300058-1300077 None:intergenic 45.0%
AATGGTGAGAACGGTGAAGA+AGG + chr3_3:1300197-1300216 None:intergenic 45.0%
GAATCGGTGGCCATTTGTTT+CGG - chr3_3:1300545-1300564 Msa0437540:intron 45.0%
AATCGGTGGCCATTTGTTTC+GGG - chr3_3:1300546-1300565 Msa0437540:intron 45.0%
! TGTTTCGGGTACATAATCGG+TGG - chr3_3:1300560-1300579 Msa0437540:intron 45.0%
ATTTCCAGACACCAGAAGTC+TGG + chr3_3:1300707-1300726 None:intergenic 45.0%
CCGTGTATTAGATTGGATGG+TGG - chr3_3:1300792-1300811 Msa0437540:CDS 45.0%
!! CGCCATGTAGAACTTTTTCC+TGG - chr3_3:1300970-1300989 Msa0437540:intron 45.0%
! CTGTTTTGCAGTTTATGCCC+TGG - chr3_3:1301274-1301293 Msa0437540:intron 45.0%
! GTTTTGCAGTTTATGCCCTG+GGG - chr3_3:1301276-1301295 Msa0437540:intron 45.0%
! GACATTCATTAGCTTCCCCA+GGG + chr3_3:1301294-1301313 None:intergenic 45.0%
! TGACATTCATTAGCTTCCCC+AGG + chr3_3:1301295-1301314 None:intergenic 45.0%
GCTTGTCGTAGCTTATTTGG+GGG - chr3_3:1301477-1301496 Msa0437540:intron 45.0%
! TTTGAAGTCGACTCTCTCAC+TGG - chr3_3:1301930-1301949 Msa0437540:intron 45.0%
AATCTAGCACAGCTGCCATT+TGG + chr3_3:1302154-1302173 None:intergenic 45.0%
AACAGTATCACGCATTCCTG+AGG + chr3_3:1302358-1302377 None:intergenic 45.0%
!!! GTTTTAGGAAAAGAGGGAGG+GGG + chr3_3:1302536-1302555 None:intergenic 45.0%
!!! GGTTTTAGGAAAAGAGGGAG+GGG + chr3_3:1302537-1302556 None:intergenic 45.0%
AAACTGGTTGCTATCGGTAC+AGG + chr3_3:1302876-1302895 None:intergenic 45.0%
CCAGACAAACTGCATGAAAC+TGG + chr3_3:1302892-1302911 None:intergenic 45.0%
CCAGTTTCATGCAGTTTGTC+TGG - chr3_3:1302889-1302908 Msa0437540:intron 45.0%
TCACAGAACTGGAGATCACA+TGG + chr3_3:1303357-1303376 None:intergenic 45.0%
GCAAAAGATGCTGGGATCAA+TGG - chr3_3:1303982-1304001 Msa0437540:CDS 45.0%
TGCTGGGATCAATGGAATAG+AGG - chr3_3:1303990-1304009 Msa0437540:CDS 45.0%
! TCCCCCTTGTACTTTTGTGA+TGG + chr3_3:1304060-1304079 None:intergenic 45.0%
TTATATGCACCAGACCAGGA+AGG - chr3_3:1304091-1304110 Msa0437540:five_prime_UTR 45.0%
TATATGCACCAGACCAGGAA+GGG - chr3_3:1304092-1304111 Msa0437540:five_prime_UTR 45.0%
GGCTTCCCAAATAAGGTACA+TGG - chr3_3:1304166-1304185 Msa0437540:five_prime_UTR 45.0%
GTACAACAGGCTTCCTTGAA+AGG + chr3_3:1304273-1304292 None:intergenic 45.0%
!!! TTTTTATTTCTATTATTATT+TGG + chr3_3:1297725-1297744 None:intergenic 5.0%
!! TAATATATTTAAGTATTAAA+TGG - chr3_3:1301758-1301777 Msa0437540:intron 5.0%
GCAGCAGTACAACGAAGAAG+GGG - chr3_3:1297907-1297926 Msa0437540:three_prime_UTR 50.0%
!! TGGAAATGGCGGGTGATAGT+TGG - chr3_3:1298064-1298083 Msa0437540:CDS 50.0%
!! GGAAATGGCGGGTGATAGTT+GGG - chr3_3:1298065-1298084 Msa0437540:CDS 50.0%
!! GGGTGATAGTTGGGTACTGA+TGG - chr3_3:1298074-1298093 Msa0437540:CDS 50.0%
GTAGTGGTGCAAAGATGAGC+GGG + chr3_3:1298204-1298223 None:intergenic 50.0%
! GGTAGTGGTGCAAAGATGAG+CGG + chr3_3:1298205-1298224 None:intergenic 50.0%
GGAAGGACTAACAGAAACGG+TGG + chr3_3:1298226-1298245 None:intergenic 50.0%
TCGTATGTGGCTCAATGGCA+AGG - chr3_3:1298257-1298276 Msa0437540:intron 50.0%
CAAATACACGGACACCAGAC+AGG + chr3_3:1298447-1298466 None:intergenic 50.0%
CAGACACGCAACACTAACAC+TGG + chr3_3:1298586-1298605 None:intergenic 50.0%
GCGCAGAGAGACATATTTCG+TGG + chr3_3:1298832-1298851 None:intergenic 50.0%
GGATCTCCCTTAAACAGCTC+TGG + chr3_3:1298957-1298976 None:intergenic 50.0%
TGCAGTGGGGAAGTTGTTGT+AGG + chr3_3:1299067-1299086 None:intergenic 50.0%
!! TGGATTGGCTTCATCAGCTG+CGG - chr3_3:1299089-1299108 Msa0437540:intron 50.0%
GGCCTTGGATAATAAAGGGG+GGG - chr3_3:1299778-1299797 Msa0437540:CDS 50.0%
TCATGTGACTGGAAGGTCAC+AGG - chr3_3:1299826-1299845 Msa0437540:intron 50.0%
! CACCAGGCTGCCCTTTTTAT+TGG - chr3_3:1299957-1299976 Msa0437540:intron 50.0%
GTCCAATAAAAAGGGCAGCC+TGG + chr3_3:1299962-1299981 None:intergenic 50.0%
AGAAGGTCAGGGGAAAACGT+GGG + chr3_3:1300180-1300199 None:intergenic 50.0%
AAGAAGGTCAGGGGAAAACG+TGG + chr3_3:1300181-1300200 None:intergenic 50.0%
AGAACGGTGAAGAAGGTCAG+GGG + chr3_3:1300190-1300209 None:intergenic 50.0%
GAGAACGGTGAAGAAGGTCA+GGG + chr3_3:1300191-1300210 None:intergenic 50.0%
TGAGAACGGTGAAGAAGGTC+AGG + chr3_3:1300192-1300211 None:intergenic 50.0%
CTTCACCGTTCTCACCATTG+TGG - chr3_3:1300198-1300217 Msa0437540:intron 50.0%
GAGTAGCAGTTCCAGACTTC+TGG - chr3_3:1300693-1300712 Msa0437540:intron 50.0%
AGTTCCAGACTTCTGGTGTC+TGG - chr3_3:1300700-1300719 Msa0437540:intron 50.0%
ACCTTGCAATAGCAGACAGC+TGG + chr3_3:1301331-1301350 None:intergenic 50.0%
! CTAGGTTAGCTCTCGGCAAA+AGG - chr3_3:1302320-1302339 Msa0437540:intron 50.0%
AAGGAAACTAGCAGCACCTC+AGG - chr3_3:1302339-1302358 Msa0437540:intron 50.0%
GCTTGAAAGTAGGGAGGTCT+TGG + chr3_3:1302577-1302596 None:intergenic 50.0%
CCTGTGGAGCTTCTTCTGAA+CGG + chr3_3:1303096-1303115 None:intergenic 50.0%
CGTGCAATTAGAACCGCGTT+TGG + chr3_3:1303763-1303782 None:intergenic 50.0%
! TGGAGGGAAGAGAGTTTTGC+AGG + chr3_3:1303936-1303955 None:intergenic 50.0%
ATATGCACCAGACCAGGAAG+GGG - chr3_3:1304093-1304112 Msa0437540:five_prime_UTR 50.0%
!! TAGCTTGCTCGTGCAACACG+AGG + chr3_3:1297662-1297681 None:intergenic 55.0%
!! ACAGCTCTGGAATCTTCCCC+CGG + chr3_3:1298944-1298963 None:intergenic 55.0%
AACAACTTCCCCACTGCAGC+TGG - chr3_3:1299069-1299088 Msa0437540:intron 55.0%
AAGCCAATCCAGCTGCAGTG+GGG + chr3_3:1299080-1299099 None:intergenic 55.0%
GAAGCCAATCCAGCTGCAGT+GGG + chr3_3:1299081-1299100 None:intergenic 55.0%
TGAAGCCAATCCAGCTGCAG+TGG + chr3_3:1299082-1299101 None:intergenic 55.0%
!! GGATTGGCTTCATCAGCTGC+GGG - chr3_3:1299090-1299109 Msa0437540:intron 55.0%
GGCCCCCCCTTTATTATCCA+AGG + chr3_3:1299783-1299802 None:intergenic 55.0%
GGATAATAAAGGGGGGGCCT+TGG - chr3_3:1299784-1299803 Msa0437540:CDS 55.0%
CATAAGCAGGGTTCGGGAAG+GGG + chr3_3:1299923-1299942 None:intergenic 55.0%
GCATAAGCAGGGTTCGGGAA+GGG + chr3_3:1299924-1299943 None:intergenic 55.0%
TGCATAAGCAGGGTTCGGGA+AGG + chr3_3:1299925-1299944 None:intergenic 55.0%
TTCCCGAACCCTGCTTATGC+AGG - chr3_3:1299924-1299943 Msa0437540:intron 55.0%
CTCCTGCATAAGCAGGGTTC+GGG + chr3_3:1299929-1299948 None:intergenic 55.0%
GCTCCTGCATAAGCAGGGTT+CGG + chr3_3:1299930-1299949 None:intergenic 55.0%
! TGCAGGAGCTTTAGTGCACC+AGG - chr3_3:1299941-1299960 Msa0437540:intron 55.0%
AGCCAACGCCAGACAGATGA+CGG + chr3_3:1300349-1300368 None:intergenic 55.0%
CTGGAACTGCTACTCTGTGC+TGG + chr3_3:1300688-1300707 None:intergenic 55.0%
GCCAGCTGTCTGCTATTGCA+AGG - chr3_3:1301327-1301346 Msa0437540:intron 55.0%
CGACTCTCTCACTGGAAGTG+CGG - chr3_3:1301938-1301957 Msa0437540:intron 55.0%
CCGTTCAGAAGAAGCTCCAC+AGG - chr3_3:1303093-1303112 Msa0437540:CDS 55.0%
GTTTGATGCAGGGCCAAACG+CGG - chr3_3:1303747-1303766 Msa0437540:intron 55.0%
CAACATCACACGCGCGAGCA+CGG + chr3_3:1298978-1298997 None:intergenic 60.0%
TGCTCGCGCGTGTGATGTTG+AGG - chr3_3:1298978-1298997 Msa0437540:intron 60.0%
CTTCCCCACTGCAGCTGGAT+TGG - chr3_3:1299074-1299093 Msa0437540:intron 60.0%
GCTGCGGGTTTCGCTTGTCT+TGG - chr3_3:1299105-1299124 Msa0437540:intron 60.0%
TCTCCCTGCCGTCATCTGTC+TGG - chr3_3:1300338-1300357 Msa0437540:intron 60.0%
! ACGCCAGACAGATGACGGCA+GGG + chr3_3:1300344-1300363 None:intergenic 60.0%
! AACGCCAGACAGATGACGGC+AGG + chr3_3:1300345-1300364 None:intergenic 60.0%
TGCCGTCATCTGTCTGGCGT+TGG - chr3_3:1300344-1300363 Msa0437540:intron 60.0%
!! CATCTGTCTGGCGTTGGCTG+CGG - chr3_3:1300350-1300369 Msa0437540:intron 60.0%
AAAAGAGGGAGGGGGAGAGG+TGG + chr3_3:1302528-1302547 None:intergenic 60.0%
AGGAAAAGAGGGAGGGGGAG+AGG + chr3_3:1302531-1302550 None:intergenic 60.0%
AACAGGTCCCCTTCCTGGTC+TGG + chr3_3:1304103-1304122 None:intergenic 60.0%
AGCACAACAGGTCCCCTTCC+TGG + chr3_3:1304108-1304127 None:intergenic 60.0%
GTGCAACACGAGGCCACCGT+GGG + chr3_3:1297652-1297671 None:intergenic 65.0%
! AAGGGGGGGCCTTGGTGCAA+AGG - chr3_3:1299792-1299811 Msa0437540:CDS 65.0%
!! CTGGCGTTGGCTGCGGACAT+CGG - chr3_3:1300357-1300376 Msa0437540:intron 65.0%
CGTGCAACACGAGGCCACCG+TGG + chr3_3:1297653-1297672 None:intergenic 70.0%
CGGGAAGGGGTCCCGCCAAT+TGG + chr3_3:1299910-1299929 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 1297644 1304495 1297644 ID=Msa0437540;Name=Msa0437540
chr3_3 mRNA 1297644 1304495 1297644 ID=Msa0437540-mRNA-1;Parent=Msa0437540;Name=Msa0437540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=425|1|1|1|0.88|1|10|316|418
chr3_3 exon 1297644 1298182 1297644 ID=Msa0437540-mRNA-1:exon:122;Parent=Msa0437540-mRNA-1
chr3_3 exon 1298282 1298403 1298282 ID=Msa0437540-mRNA-1:exon:121;Parent=Msa0437540-mRNA-1
chr3_3 exon 1299025 1299073 1299025 ID=Msa0437540-mRNA-1:exon:120;Parent=Msa0437540-mRNA-1
chr3_3 exon 1299185 1299342 1299185 ID=Msa0437540-mRNA-1:exon:119;Parent=Msa0437540-mRNA-1
chr3_3 exon 1299729 1299815 1299729 ID=Msa0437540-mRNA-1:exon:118;Parent=Msa0437540-mRNA-1
chr3_3 exon 1300454 1300534 1300454 ID=Msa0437540-mRNA-1:exon:117;Parent=Msa0437540-mRNA-1
chr3_3 exon 1300615 1300678 1300615 ID=Msa0437540-mRNA-1:exon:116;Parent=Msa0437540-mRNA-1
chr3_3 exon 1300791 1300854 1300791 ID=Msa0437540-mRNA-1:exon:115;Parent=Msa0437540-mRNA-1
chr3_3 exon 1303013 1303211 1303013 ID=Msa0437540-mRNA-1:exon:114;Parent=Msa0437540-mRNA-1
chr3_3 exon 1303861 1304495 1303861 ID=Msa0437540-mRNA-1:exon:113;Parent=Msa0437540-mRNA-1
chr3_3 five_prime_UTR 1304071 1304495 1304071 ID=Msa0437540-mRNA-1:five_prime_utr;Parent=Msa0437540-mRNA-1
chr3_3 CDS 1303861 1304070 1303861 ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1
chr3_3 CDS 1303013 1303211 1303013 ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1
chr3_3 CDS 1300791 1300854 1300791 ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1
chr3_3 CDS 1300615 1300678 1300615 ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1
chr3_3 CDS 1300454 1300534 1300454 ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1
chr3_3 CDS 1299729 1299815 1299729 ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1
chr3_3 CDS 1299185 1299342 1299185 ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1
chr3_3 CDS 1299025 1299073 1299025 ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1
chr3_3 CDS 1298282 1298403 1298282 ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1
chr3_3 CDS 1297960 1298182 1297960 ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1
chr3_3 three_prime_UTR 1297644 1297959 1297644 ID=Msa0437540-mRNA-1:three_prime_utr;Parent=Msa0437540-mRNA-1
Gene Sequence

>Msa0437540

ATGGCGGGTGATAGTTGGGTACTGATGGTTACTGCTCAGACACCAACCAACATTGCTGTGATCAAGTATTGGGGTAAGAGAGATGAAACCCTAATCTTACCTGTTAATGATAGTATCAGTGTCACTCTTGATCCCGCTCATCTTTGCACCACTACCACCGTTTCTGTTAGTCCTTCCTTTCAACAAGATCGTATGTGGCTCAATGGCAAGGAAATTTCTCTTTCCGGGGGAAGATTCCAGAGCTGTTTAAGGGAGATCCGTGCTCGCGCGTGTGATGTTGAGGATAATAAAAAGGGTATTAAGATCACCAAGGAGGATTGGAGCAAATTGAACGTACATATTGCTTCCTACAACAACTTCCCCACTGCAGCTGGATTGGCTTCATCAGCTGCGGGTTTCGCTTGTCTTGTTTATGCCCTGGGGAAGCTAATGAATGTCAAAGAAGATGAAAGCCAGCTGTCTGCTATTGCAAGGCAAGGATCAGGTAGTGCTTGTCGTAGCTTATTTGGGGGATTTGTGAAGTGGAAAATGGGAAAAGAGGAGAATGGAAGTGATAGTCTTGCGGTTCAACTTGCTGATGAAAAGCATTGGGATGAACTTGTTATTGTTATTGCTGTGGTTAGCTCTCGGCAAAAGGAAACTAGCAGCACCTCAGGAATGCGTGATACTGTTGAAACAAGTTTGCTTTTACAGCATAGAGCAAAGGAAATAGTGCCAAAGAGGATACTGAAAATGGAAGAAGCCATTCGAAACCGTGATTTTGCATCTTTTTCACAACTCACCTGTACCGATAGCAACCAGTTTCATGCAGTTTGTCTGGATACAAGTCCCCCTATATTTTACATGAATGATACATCCCATAGGATAATCAGCATTGTTGACAAGTGGAACCGTTCAGAAGAAGCTCCACAGGTAGCTTATACGTTTGATGCAGGGCCAAACGCGGTTCTAATTGCACGTAATAGGAAAGCTGCAACCCTTTTGATTCAGAAGTTGCTTTACTACTTCCCTCCAAATTCAGATGACCTCAACAGTTACATTATTGGTGACAAGTCAATTGCAAAAGATGCTGGGATCAATGGAATAGAGGACATAGAAGCTTTGCCACCACCTCCAGAAATTAAAGACAATATTCCATCACAAAAGTACAAGGGGGATGTCAGTTACTTTATATGCACCAGACCAGGAAGGGGACCTGTTGTGCTTACTGATGAAAGTCAAGCTCTTCTCAACAGTGAAAATGGGCTTCCCAAATAA

Protein sequence

>Msa0437540

MAGDSWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPAHLCTTTTVSVSPSFQQDRMWLNGKEISLSGGRFQSCLREIRARACDVEDNKKGIKITKEDWSKLNVHIASYNNFPTAAGLASSAAGFACLVYALGKLMNVKEDESQLSAIARQGSGSACRSLFGGFVKWKMGKEENGSDSLAVQLADEKHWDELVIVIAVVSSRQKETSSTSGMRDTVETSLLLQHRAKEIVPKRILKMEEAIRNRDFASFSQLTCTDSNQFHAVCLDTSPPIFYMNDTSHRIISIVDKWNRSEEAPQVAYTFDAGPNAVLIARNRKAATLLIQKLLYYFPPNSDDLNSYIIGDKSIAKDAGINGIEDIEALPPPPEIKDNIPSQKYKGDVSYFICTRPGRGPVVLTDESQALLNSENGLPK*