Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437540 | XP_013470287.1 | 98.325 | 418 | 7 | 0 | 1 | 418 | 1 | 418 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437540 | sp|F4JCU3|MVD2_ARATH | 80.668 | 419 | 80 | 1 | 1 | 418 | 1 | 419 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437540 | A0A072W240 | 98.325 | 418 | 7 | 0 | 1 | 418 | 1 | 418 | 0.0 | 853 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044170 | Msa0437540 | 0.965605 | 8.013841e-125 | -8.615850e-47 |
| Msa0045620 | Msa0437540 | 0.804801 | 1.814243e-49 | -8.615850e-47 |
| Msa0090850 | Msa0437540 | 0.946253 | 6.568339e-105 | -8.615850e-47 |
| Msa0183700 | Msa0437540 | 0.857079 | 2.083188e-62 | -8.615850e-47 |
| Msa0189720 | Msa0437540 | 0.809742 | 1.627894e-50 | -8.615850e-47 |
| Msa0199720 | Msa0437540 | 0.832415 | 9.575567e-56 | -8.615850e-47 |
| Msa0371510 | Msa0437540 | 0.802002 | 6.897468e-49 | -8.615850e-47 |
| Msa0437540 | Msa0450030 | 0.800050 | 1.728641e-48 | -8.615850e-47 |
| Msa0437540 | Msa0487100 | 0.810542 | 1.094711e-50 | -8.615850e-47 |
| Msa0437540 | Msa0508580 | 0.808466 | 3.055407e-50 | -8.615850e-47 |
| Msa0437540 | Msa0549970 | 0.804813 | 1.804384e-49 | -8.615850e-47 |
| Msa0437540 | Msa0623310 | 0.817494 | 3.203159e-52 | -8.615850e-47 |
| Msa0437540 | Msa0646190 | -0.803149 | 4.000967e-49 | -8.615850e-47 |
| Msa0437540 | Msa1012520 | 0.811701 | 6.137130e-51 | -8.615850e-47 |
| Msa0437540 | Msa1053990 | 0.825874 | 3.695022e-54 | -8.615850e-47 |
| Msa0437540 | Msa1179190 | 0.814439 | 1.540070e-51 | -8.615850e-47 |
| Msa0437540 | Msa1200500 | 0.856601 | 2.881786e-62 | -8.615850e-47 |
| Msa0437540 | Msa1206920 | 0.800695 | 1.277481e-48 | -8.615850e-47 |
| Msa0437540 | Msa1240060 | 0.823593 | 1.274233e-53 | -8.615850e-47 |
| Msa0437540 | Msa1255710 | 0.843272 | 1.551293e-58 | -8.615850e-47 |
| Msa0437540 | Msa1257200 | 0.807081 | 6.015977e-50 | -8.615850e-47 |
| Msa0437540 | Msa1281370 | 0.809332 | 1.993824e-50 | -8.615850e-47 |
| Msa0437540 | Msa1293840 | 0.890619 | 8.366309e-74 | -8.615850e-47 |
| Msa0437540 | Msa1296860 | 0.817308 | 3.526725e-52 | -8.615850e-47 |
| Msa0437540 | Msa1314040 | 0.800330 | 1.516383e-48 | -8.615850e-47 |
| Msa0437540 | Msa1320530 | 0.824640 | 7.236303e-54 | -8.615850e-47 |
| Msa0437540 | Msa1359890 | -0.809153 | 2.177723e-50 | -8.615850e-47 |
| Msa0437540 | Msa1363690 | 0.804764 | 1.846998e-49 | -8.615850e-47 |
| Msa0437540 | Msa1371800 | 0.804448 | 2.150062e-49 | -8.615850e-47 |
| Msa0437540 | Msa1396550 | 0.810403 | 1.173108e-50 | -8.615850e-47 |
| Msa0437540 | Msa1460970 | 0.828487 | 8.747750e-55 | -8.615850e-47 |
| Msa0280470 | Msa0437540 | 0.810813 | 9.563208e-51 | -8.615850e-47 |
| Msa0319690 | Msa0437540 | 0.868027 | 8.859802e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437540 | MtrunA17_Chr1g0210791 | 98.325 | 418 | 7 | 0 | 1 | 418 | 1 | 418 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437540 | AT3G54250.1 | 80.668 | 419 | 80 | 1 | 1 | 418 | 1 | 419 | 0.0 | 697 |
| Msa0437540 | AT2G38700.1 | 76.372 | 419 | 91 | 2 | 1 | 418 | 1 | 412 | 0.0 | 654 |
| Msa0437540 | AT3G54250.2 | 84.039 | 307 | 49 | 0 | 1 | 307 | 1 | 307 | 0.0 | 530 |
Find 160 sgRNAs with CRISPR-Local
Find 471 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCCCATGTACCTTATT+TGG | 0.031696 | 3_3:+1297945 | None:intergenic |
| GCTCTTCTCAACAGTGAAAA+TGG | 0.180412 | 3_3:-1297973 | Msa0437540:CDS |
| CTTCCCTCCAGTTACATTAT+TGG | 0.191653 | 3_3:-1298171 | Msa0437540:intron |
| GGAATATTGTCTTTAATTTC+TGG | 0.195761 | 3_3:+1298081 | None:intergenic |
| GAAGATTCCAGAGCTGTTTA+AGG | 0.204279 | 3_3:-1303170 | Msa0437540:CDS |
| AGTGCTTGTCGTAGCTTATT+TGG | 0.220437 | 3_3:-1300643 | Msa0437540:CDS |
| GTGTAGGAAATTTCTCTTTC+CGG | 0.230107 | 3_3:-1303195 | Msa0437540:intron |
| GGGATTTGTGAAGTGGAAAA+TGG | 0.242630 | 3_3:-1300620 | Msa0437540:CDS |
| TGATGTTGAGGATAATAAAA+AGG | 0.260260 | 3_3:-1303127 | Msa0437540:CDS |
| GTGCTTGTCGTAGCTTATTT+GGG | 0.264802 | 3_3:-1300642 | Msa0437540:CDS |
| ATCATTAACAGGTAAGATTA+GGG | 0.303873 | 3_3:+1303960 | None:intergenic |
| GCTCAGGAGAATTAAATTAA+AGG | 0.305398 | 3_3:+1297681 | None:intergenic |
| TATCATTCATGTAAAATATA+GGG | 0.309352 | 3_3:+1299195 | None:intergenic |
| GCATGGTGATTTGATTTAAT+AGG | 0.311492 | 3_3:-1304329 | Msa0437540:five_prime_UTR |
| CGGTTCTAATTGCACGTAAT+AGG | 0.313651 | 3_3:-1298350 | Msa0437540:CDS |
| GCCAAAGAGGATACTGAAAA+TGG | 0.316786 | 3_3:-1299312 | Msa0437540:CDS |
| TGGTTGATCTATTCTTCATT+AGG | 0.316789 | 3_3:-1297916 | Msa0437540:three_prime_UTR |
| CTGTTGAGGTCATCTGAATT+TGG | 0.317231 | 3_3:+1298282 | None:intergenic |
| TATCATTAACAGGTAAGATT+AGG | 0.322166 | 3_3:+1303959 | None:intergenic |
| GTATCATTCATGTAAAATAT+AGG | 0.322715 | 3_3:+1299194 | None:intergenic |
| CATTGCTGTGATCAAGTATT+GGG | 0.327233 | 3_3:-1303998 | Msa0437540:CDS |
| AACAGGTCCCCTTCCTGGTC+TGG | 0.327487 | 3_3:+1298017 | None:intergenic |
| TATATATATTAGTTAGTAAT+GGG | 0.329149 | 3_3:+1304158 | None:intergenic |
| AACAAAACAAGGAAAGAGTT+AGG | 0.335219 | 3_3:-1304296 | Msa0437540:five_prime_UTR |
| TTATTTATTCATTTCCCATT+TGG | 0.336742 | 3_3:+1304249 | None:intergenic |
| TGTAGGAAATTTCTCTTTCC+GGG | 0.344687 | 3_3:-1303194 | Msa0437540:intron |
| CCAGTTTCATGCAGTTTGTC+TGG | 0.349580 | 3_3:-1299228 | Msa0437540:CDS |
| GAAAATGGGCTTCCCAAATA+AGG | 0.349886 | 3_3:-1297958 | Msa0437540:exon |
| TTTGATTGATTTATTGGAAA+TGG | 0.357406 | 3_3:-1304067 | Msa0437540:exon |
| ATTTCCCATGTACCTTATTT+GGG | 0.363262 | 3_3:+1297946 | None:intergenic |
| TATTTCTATTATTATTTGGT+TGG | 0.373112 | 3_3:+1304399 | None:intergenic |
| CTTCATTAGGCTTATCTGTC+CGG | 0.383929 | 3_3:-1297903 | Msa0437540:three_prime_UTR |
| CTTCCCCACTGCAGCTGGAT+TGG | 0.391119 | 3_3:-1303043 | Msa0437540:CDS |
| GAGATTAAATTGAATTCGTT+CGG | 0.405752 | 3_3:+1304186 | None:intergenic |
| CAATTTGCTCCAATCCTCCT+TGG | 0.409304 | 3_3:+1303092 | None:intergenic |
| CCAGACAAACTGCATGAAAC+TGG | 0.411135 | 3_3:+1299228 | None:intergenic |
| AACAACTTCCCCACTGCAGC+TGG | 0.415060 | 3_3:-1303048 | Msa0437540:CDS |
| CGTGCAATTAGAACCGCGTT+TGG | 0.416780 | 3_3:+1298357 | None:intergenic |
| TGGAAATGGCGGGTGATAGT+TGG | 0.416905 | 3_3:-1304053 | Msa0437540:exon |
| AAAGCAACTTCTGAATCAAA+AGG | 0.417167 | 3_3:+1298316 | None:intergenic |
| AATCATGTCATGGGTACAAC+AGG | 0.421940 | 3_3:+1297834 | None:intergenic |
| GAGAAGAGAATCCATCCAAA+TGG | 0.429630 | 3_3:-1304264 | Msa0437540:five_prime_UTR |
| CTTTCATCAGTAAGCACAAC+AGG | 0.429825 | 3_3:+1298000 | None:intergenic |
| TTTCTTAGATGACCCTTTCA+AGG | 0.430043 | 3_3:-1297860 | Msa0437540:three_prime_UTR |
| AGCACAACAGGTCCCCTTCC+TGG | 0.433113 | 3_3:+1298012 | None:intergenic |
| CTAGGTTAGCTCTCGGCAAA+AGG | 0.434194 | 3_3:-1299797 | Msa0437540:intron |
| CAAATTCAGATGACCTCAAC+AGG | 0.435218 | 3_3:-1298281 | Msa0437540:intron |
| GCAAAAGATGCTGGGATCAA+TGG | 0.438234 | 3_3:-1298135 | Msa0437540:CDS |
| ACACTGATACTATCATTAAC+AGG | 0.448731 | 3_3:+1303949 | None:intergenic |
| AAGTCAATTGCAAAAGATGC+TGG | 0.449709 | 3_3:-1298144 | Msa0437540:CDS |
| CTCTTCTCAACAGTGAAAAT+GGG | 0.455253 | 3_3:-1297972 | Msa0437540:CDS |
| AAGATTCCAGAGCTGTTTAA+GGG | 0.458336 | 3_3:-1303169 | Msa0437540:CDS |
| GCTGCGGGTTTCGCTTGTCT+TGG | 0.462943 | 3_3:-1303012 | Msa0437540:intron |
| GGATTTGTGAAGTGGAAAAT+GGG | 0.468572 | 3_3:-1300619 | Msa0437540:CDS |
| TTATATATATTAGTTAGTAA+TGG | 0.470292 | 3_3:+1304157 | None:intergenic |
| TGACATTCATTAGCTTCCCC+AGG | 0.470709 | 3_3:+1300825 | None:intergenic |
| GGAAATGGCGGGTGATAGTT+GGG | 0.471328 | 3_3:-1304052 | Msa0437540:exon |
| TCCAATAAATCAATCAAAAG+AGG | 0.473214 | 3_3:+1304072 | None:intergenic |
| CAAGATCGTATGTGGCTCAA+TGG | 0.475195 | 3_3:-1303865 | Msa0437540:CDS |
| GGATCTCCCTTAAACAGCTC+TGG | 0.477766 | 3_3:+1303163 | None:intergenic |
| ACATTGCTGTGATCAAGTAT+TGG | 0.482733 | 3_3:-1303999 | Msa0437540:CDS |
| GTAGCTTATACGTTTGATGC+AGG | 0.483477 | 3_3:-1298381 | Msa0437540:CDS |
| AAGGAAACTAGCAGCACCTC+AGG | 0.484840 | 3_3:-1299778 | Msa0437540:CDS |
| ACCTTGCAATAGCAGACAGC+TGG | 0.485298 | 3_3:+1300789 | None:intergenic |
| CCTTTCAACAAGATCGTATG+TGG | 0.485330 | 3_3:-1303873 | Msa0437540:CDS |
| TTGTCTTTAATTTCTGGAGG+TGG | 0.485942 | 3_3:+1298087 | None:intergenic |
| TTATTCATTTCCCATTTGGA+TGG | 0.486621 | 3_3:+1304253 | None:intergenic |
| TGATATTTATAGGAGGAGAA+TGG | 0.489664 | 3_3:-1300524 | Msa0437540:intron |
| TTAAGATCACCAAGGAGGAT+TGG | 0.489853 | 3_3:-1303101 | Msa0437540:CDS |
| GGCTTCCCAAATAAGGTACA+TGG | 0.490515 | 3_3:-1297951 | Msa0437540:exon |
| AACTTGCTGATGAAAAGCAT+TGG | 0.492166 | 3_3:-1300481 | Msa0437540:CDS |
| AAACTGGTTGCTATCGGTAC+AGG | 0.492574 | 3_3:+1299244 | None:intergenic |
| TCTTTAATTTCTGGAGGTGG+TGG | 0.493387 | 3_3:+1298090 | None:intergenic |
| ACTATATACAGGCAAGGATC+AGG | 0.494638 | 3_3:-1300667 | Msa0437540:intron |
| AAAGGTGCTCAATTCAATAC+AGG | 0.495352 | 3_3:+1297699 | None:intergenic |
| TGCAAAATCACGGTTTCGAA+TGG | 0.495401 | 3_3:+1299283 | None:intergenic |
| AGAAGAGAATCCATCCAAAT+GGG | 0.499644 | 3_3:-1304263 | Msa0437540:five_prime_UTR |
| GTACAACAGGCTTCCTTGAA+AGG | 0.505102 | 3_3:+1297847 | None:intergenic |
| AAGCAGCAGTACAACGAAGA+AGG | 0.508181 | 3_3:-1304212 | Msa0437540:five_prime_UTR |
| TGCTGGGATCAATGGAATAG+AGG | 0.509843 | 3_3:-1298127 | Msa0437540:CDS |
| TGGATTGGCTTCATCAGCTG+CGG | 0.515526 | 3_3:-1303028 | Msa0437540:CDS |
| CCGTTCAGAAGAAGCTCCAC+AGG | 0.520575 | 3_3:-1299024 | Msa0437540:intron |
| TACTTTATATGCACCAGACC+AGG | 0.522597 | 3_3:-1298030 | Msa0437540:CDS |
| TGGTGATTTGATTTAATAGG+AGG | 0.523567 | 3_3:-1304326 | Msa0437540:five_prime_UTR |
| GAACACAAATAATCATGTCA+TGG | 0.523799 | 3_3:+1297824 | None:intergenic |
| ACTTGCTGATGAAAAGCATT+GGG | 0.525139 | 3_3:-1300480 | Msa0437540:CDS |
| TACAACAGGCTTCCTTGAAA+GGG | 0.527193 | 3_3:+1297848 | None:intergenic |
| TTGAGGTCATCTGAATTTGG+AGG | 0.527987 | 3_3:+1298285 | None:intergenic |
| TGCTTGTCGTAGCTTATTTG+GGG | 0.531557 | 3_3:-1300641 | Msa0437540:CDS |
| TGCAGTGGGGAAGTTGTTGT+AGG | 0.531785 | 3_3:+1303053 | None:intergenic |
| ACAAAACAAGGAAAGAGTTA+GGG | 0.535738 | 3_3:-1304295 | Msa0437540:five_prime_UTR |
| ACAGCTCTGGAATCTTCCCC+CGG | 0.536812 | 3_3:+1303176 | None:intergenic |
| GGATTGGCTTCATCAGCTGC+GGG | 0.537741 | 3_3:-1303027 | Msa0437540:CDS |
| ACTAACAGAAACGGTGGTAG+TGG | 0.541116 | 3_3:+1303900 | None:intergenic |
| TATTCCATCACAAAAGTACA+AGG | 0.548644 | 3_3:-1298064 | Msa0437540:CDS |
| AAGTTGAACTAGCAAAGCTC+AGG | 0.551576 | 3_3:+1297665 | None:intergenic |
| AAGCAACTTCTGAATCAAAA+GGG | 0.555123 | 3_3:+1298317 | None:intergenic |
| TTTATTTCTAGGTTAGCTCT+CGG | 0.556502 | 3_3:-1299804 | Msa0437540:intron |
| AACACAAATAATCATGTCAT+GGG | 0.557351 | 3_3:+1297825 | None:intergenic |
| ATCATTCATGTAAAATATAG+GGG | 0.557388 | 3_3:+1299196 | None:intergenic |
| TGCATGAAACTGGTTGCTAT+CGG | 0.559504 | 3_3:+1299238 | None:intergenic |
| AGCAGCAGTACAACGAAGAA+GGG | 0.566437 | 3_3:-1304211 | Msa0437540:five_prime_UTR |
| TAGCTTATACGTTTGATGCA+GGG | 0.567321 | 3_3:-1298380 | Msa0437540:CDS |
| TGAAGCCAATCCAGCTGCAG+TGG | 0.570482 | 3_3:+1303038 | None:intergenic |
| AATGAAGAATAGATCAACCA+TGG | 0.572623 | 3_3:+1297919 | None:intergenic |
| GATTGAATTGAATTATGTAA+CGG | 0.573370 | 3_3:+1304432 | None:intergenic |
| TATATGCACCAGACCAGGAA+GGG | 0.575319 | 3_3:-1298025 | Msa0437540:CDS |
| GACATTCATTAGCTTCCCCA+GGG | 0.579343 | 3_3:+1300826 | None:intergenic |
| GATTGATTTATTGGAAATGG+CGG | 0.580799 | 3_3:-1304064 | Msa0437540:exon |
| AATAGGAAATAGTGCCAAAG+AGG | 0.581666 | 3_3:-1299325 | Msa0437540:intron |
| ATATTGTCTTTAATTTCTGG+AGG | 0.581787 | 3_3:+1298084 | None:intergenic |
| GAAGCCAATCCAGCTGCAGT+GGG | 0.584983 | 3_3:+1303039 | None:intergenic |
| TTCCATCACAAAAGTACAAG+GGG | 0.586717 | 3_3:-1298062 | Msa0437540:CDS |
| TAATCAGCATTGTTGACAAG+TGG | 0.588743 | 3_3:-1299049 | Msa0437540:CDS |
| TGCTCAATTCAATACAGGAA+AGG | 0.588746 | 3_3:+1297704 | None:intergenic |
| AGTCAATTGCAAAAGATGCT+GGG | 0.589588 | 3_3:-1298143 | Msa0437540:CDS |
| CAACATCACACGCGCGAGCA+CGG | 0.590089 | 3_3:+1303142 | None:intergenic |
| TGCTCGCGCGTGTGATGTTG+AGG | 0.590241 | 3_3:-1303139 | Msa0437540:CDS |
| CCTGTGGAGCTTCTTCTGAA+CGG | 0.591583 | 3_3:+1299024 | None:intergenic |
| ATACTTGATCACAGCAATGT+TGG | 0.591879 | 3_3:+1304002 | None:intergenic |
| ATTGATTTATTGGAAATGGC+GGG | 0.593123 | 3_3:-1304063 | Msa0437540:exon |
| ATACGATCTTGTTGAAAGGA+AGG | 0.593700 | 3_3:+1303877 | None:intergenic |
| ACTTGTTATTGTTATTGCTG+TGG | 0.594012 | 3_3:-1300453 | Msa0437540:intron |
| GGGTGATAGTTGGGTACTGA+TGG | 0.595158 | 3_3:-1304043 | Msa0437540:CDS |
| GTAGTGGTGCAAAGATGAGC+GGG | 0.598911 | 3_3:+1303916 | None:intergenic |
| TATGTTTATTGAATATTGCA+TGG | 0.600725 | 3_3:-1304346 | Msa0437540:five_prime_UTR |
| CCACATACGATCTTGTTGAA+AGG | 0.601733 | 3_3:+1303873 | None:intergenic |
| AACAGTATCACGCATTCCTG+AGG | 0.602816 | 3_3:+1299762 | None:intergenic |
| TCGTATGTGGCTCAATGGCA+AGG | 0.603313 | 3_3:-1303860 | Msa0437540:intron |
| TGAGGTCATCTGAATTTGGA+GGG | 0.603420 | 3_3:+1298286 | None:intergenic |
| GCCAGCTGTCTGCTATTGCA+AGG | 0.603691 | 3_3:-1300790 | Msa0437540:intron |
| GTGCAACACGAGGCCACCGT+GGG | 0.613401 | 3_3:+1304468 | None:intergenic |
| GCTTGTCGTAGCTTATTTGG+GGG | 0.616141 | 3_3:-1300640 | Msa0437540:CDS |
| GTAGGAAATTTCTCTTTCCG+GGG | 0.619131 | 3_3:-1303193 | Msa0437540:intron |
| AAAGGAAGGACTAACAGAAA+CGG | 0.623699 | 3_3:+1303891 | None:intergenic |
| ATATGCACCAGACCAGGAAG+GGG | 0.629282 | 3_3:-1298024 | Msa0437540:CDS |
| ATGAAGAATAGATCAACCAT+GGG | 0.632388 | 3_3:+1297920 | None:intergenic |
| GAGGTCCCGTAAACAAAACA+AGG | 0.633143 | 3_3:-1304307 | Msa0437540:five_prime_UTR |
| TTGATCACAGCAATGTTGGT+TGG | 0.639254 | 3_3:+1304006 | None:intergenic |
| ACATGAATGATACATCCCAT+AGG | 0.641400 | 3_3:-1299184 | Msa0437540:intron |
| ATTCCATCACAAAAGTACAA+GGG | 0.644199 | 3_3:-1298063 | Msa0437540:CDS |
| GCAGCAGTACAACGAAGAAG+GGG | 0.653540 | 3_3:-1304210 | Msa0437540:five_prime_UTR |
| CTGAGTAACAGATCTAAGTG+AGG | 0.656597 | 3_3:+1304105 | None:intergenic |
| TCATTCATGTAAAATATAGG+GGG | 0.658384 | 3_3:+1299197 | None:intergenic |
| GGTAGTGGTGCAAAGATGAG+CGG | 0.659191 | 3_3:+1303915 | None:intergenic |
| GCTTCCCAAATAAGGTACAT+GGG | 0.661948 | 3_3:-1297950 | Msa0437540:exon |
| CGTGCAACACGAGGCCACCG+TGG | 0.662723 | 3_3:+1304467 | None:intergenic |
| GAATGGAAGTGATAGTCTTG+CGG | 0.663425 | 3_3:-1300507 | Msa0437540:CDS |
| TAGCTTGCTCGTGCAACACG+AGG | 0.663910 | 3_3:+1304458 | None:intergenic |
| ATTGCTGTGATCAAGTATTG+GGG | 0.675109 | 3_3:-1303997 | Msa0437540:CDS |
| GTACATGGGAAATATTCCCA+TGG | 0.678115 | 3_3:-1297936 | Msa0437540:three_prime_UTR |
| GTTTGATGCAGGGCCAAACG+CGG | 0.678166 | 3_3:-1298370 | Msa0437540:CDS |
| TTATATGCACCAGACCAGGA+AGG | 0.679375 | 3_3:-1298026 | Msa0437540:CDS |
| TAGGAAATTTCTCTTTCCGG+GGG | 0.687639 | 3_3:-1303192 | Msa0437540:CDS |
| AACAAGGAAAGAGTTAGGGT+AGG | 0.690689 | 3_3:-1304291 | Msa0437540:five_prime_UTR |
| GGGTATTAAGATCACCAAGG+AGG | 0.716838 | 3_3:-1303106 | Msa0437540:CDS |
| GGAAGGACTAACAGAAACGG+TGG | 0.719571 | 3_3:+1303894 | None:intergenic |
| AAAGGGTATTAAGATCACCA+AGG | 0.729322 | 3_3:-1303109 | Msa0437540:CDS |
| TCCATCACAAAAGTACAAGG+GGG | 0.737564 | 3_3:-1298061 | Msa0437540:CDS |
| AAGCCAATCCAGCTGCAGTG+GGG | 0.738884 | 3_3:+1303040 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATTAGTTAGTAAT+GGG | + | chr3_3:1297962-1297981 | None:intergenic | 10.0% |
| !! | TTATATATATTAGTTAGTAA+TGG | + | chr3_3:1297963-1297982 | None:intergenic | 10.0% |
| !!! | TTTAAATTTTCAATTCTTAA+TGG | - | chr3_3:1298326-1298345 | Msa0437540:CDS | 10.0% |
| !!! | TTAAATTTTCAATTCTTAAT+GGG | - | chr3_3:1298327-1298346 | Msa0437540:CDS | 10.0% |
| !!! | TTTTACTTTCAATTTTTAAT+TGG | - | chr3_3:1298877-1298896 | Msa0437540:intron | 10.0% |
| !! | ATAATTATCTAATAAAATTG+TGG | + | chr3_3:1300479-1300498 | None:intergenic | 10.0% |
| !! | CAAATAAATAAAAAATTATG+TGG | + | chr3_3:1302178-1302197 | None:intergenic | 10.0% |
| !! | CATATATAGTATATATTATA+CGG | - | chr3_3:1303638-1303657 | Msa0437540:intron | 10.0% |
| !!! | TATTTCTATTATTATTTGGT+TGG | + | chr3_3:1297721-1297740 | None:intergenic | 15.0% |
| !!! | CATTTTTTATATGTATTTGA+TGG | - | chr3_3:1298669-1298688 | Msa0437540:intron | 15.0% |
| !! | ATAACTATAATAGATTGAAT+CGG | - | chr3_3:1300529-1300548 | Msa0437540:intron | 15.0% |
| !!! | CTCAGATTTTTATTAATTAA+TGG | + | chr3_3:1300658-1300677 | None:intergenic | 15.0% |
| !! | CATTAATTAATAAAAATCTG+AGG | - | chr3_3:1300656-1300675 | Msa0437540:CDS | 15.0% |
| !! | AGATTATTGAATAAAGAATA+AGG | + | chr3_3:1301055-1301074 | None:intergenic | 15.0% |
| !! | TTCTTTATTCAATAATCTTT+AGG | - | chr3_3:1301057-1301076 | Msa0437540:intron | 15.0% |
| !!! | TTACTATTACTTTTATATGA+GGG | - | chr3_3:1301208-1301227 | Msa0437540:intron | 15.0% |
| !! | TATATAGTAACAACAATATT+CGG | + | chr3_3:1301438-1301457 | None:intergenic | 15.0% |
| !!! | TATTTTATTTAAATCTCTGT+GGG | - | chr3_3:1301530-1301549 | Msa0437540:intron | 15.0% |
| !!! | TGTATTCTTTTGATATTTAT+AGG | - | chr3_3:1301583-1301602 | Msa0437540:intron | 15.0% |
| !!! | TTTCTTTAGAAATATACATT+GGG | + | chr3_3:1302494-1302513 | None:intergenic | 15.0% |
| !!! | ATTTCTTTAGAAATATACAT+TGG | + | chr3_3:1302495-1302514 | None:intergenic | 15.0% |
| !! | TTATATAAATAATTATGCCA+TGG | - | chr3_3:1302718-1302737 | Msa0437540:intron | 15.0% |
| !! | TATCATTCATGTAAAATATA+GGG | + | chr3_3:1302925-1302944 | None:intergenic | 15.0% |
| !! | TAATTCATTAGTTACTTATT+TGG | - | chr3_3:1303313-1303332 | Msa0437540:intron | 15.0% |
| !! | TTATTTGGAAAACAAATTAA+AGG | - | chr3_3:1303328-1303347 | Msa0437540:intron | 15.0% |
| !! | GATTGAATTGAATTATGTAA+CGG | + | chr3_3:1297688-1297707 | None:intergenic | 20.0% |
| !! | TATGTTTATTGAATATTGCA+TGG | - | chr3_3:1297771-1297790 | Msa0437540:three_prime_UTR | 20.0% |
| !! | TTATTTATTCATTTCCCATT+TGG | + | chr3_3:1297871-1297890 | None:intergenic | 20.0% |
| !!! | TTTGATTGATTTATTGGAAA+TGG | - | chr3_3:1298050-1298069 | Msa0437540:CDS | 20.0% |
| !! | AAGTTTAAAGAGAAAAAAGA+AGG | + | chr3_3:1298291-1298310 | None:intergenic | 20.0% |
| !! | GATAATAAACAATCAAGTAT+TGG | + | chr3_3:1298648-1298667 | None:intergenic | 20.0% |
| !!! | TACTTTCAATTTTTAATTGG+TGG | - | chr3_3:1298880-1298899 | Msa0437540:intron | 20.0% |
| !! | AATGATAAGAAGAAAATTAG+AGG | - | chr3_3:1299563-1299582 | Msa0437540:intron | 20.0% |
| !! | ATGATAAGAAGAAAATTAGA+GGG | - | chr3_3:1299564-1299583 | Msa0437540:intron | 20.0% |
| !! | AGAATAACCAAAATATTCAT+GGG | + | chr3_3:1299661-1299680 | None:intergenic | 20.0% |
| !! | TAGAATAACCAAAATATTCA+TGG | + | chr3_3:1299662-1299681 | None:intergenic | 20.0% |
| !! | GTTGAACTAATAAATGTTAT+TGG | - | chr3_3:1300153-1300172 | Msa0437540:intron | 20.0% |
| !! | ATAAAAAGAAAGAATATCGA+CGG | + | chr3_3:1300255-1300274 | None:intergenic | 20.0% |
| !! | CTTATTAATAACTCAATACT+TGG | + | chr3_3:1300897-1300916 | None:intergenic | 20.0% |
| !!! | ATGTTTATTGTCTTATGTTT+TGG | - | chr3_3:1301017-1301036 | Msa0437540:intron | 20.0% |
| !! | TTCAAACTTTATGTTCTTTA+AGG | - | chr3_3:1301088-1301107 | Msa0437540:intron | 20.0% |
| !!! | GTTACTATTACTTTTATATG+AGG | - | chr3_3:1301207-1301226 | Msa0437540:intron | 20.0% |
| !!! | ATATTGTTGTTACTATATAC+AGG | - | chr3_3:1301439-1301458 | Msa0437540:intron | 20.0% |
| !!! | GTATTTTATTTAAATCTCTG+TGG | - | chr3_3:1301529-1301548 | Msa0437540:intron | 20.0% |
| !! | CAAAAGAATACAAATTACAA+TGG | + | chr3_3:1301575-1301594 | None:intergenic | 20.0% |
| !!! | ATTCTTTTGATATTTATAGG+AGG | - | chr3_3:1301586-1301605 | Msa0437540:intron | 20.0% |
| !! | TTTGTCTCTATTTAATTGAA+TGG | - | chr3_3:1301700-1301719 | Msa0437540:intron | 20.0% |
| !! | ATCATACCATAATACTAATT+TGG | - | chr3_3:1302080-1302099 | Msa0437540:intron | 20.0% |
| !! | ATATTGCCAAATTAGTATTA+TGG | + | chr3_3:1302089-1302108 | None:intergenic | 20.0% |
| !! | CTAGAAATAAATAATGAGAT+GGG | + | chr3_3:1302304-1302323 | None:intergenic | 20.0% |
| !! | AAAGTAATATTCATCTAACA+TGG | + | chr3_3:1302452-1302471 | None:intergenic | 20.0% |
| !!! | TAAAAGAATGAAAAGGTTTT+AGG | + | chr3_3:1302551-1302570 | None:intergenic | 20.0% |
| !! | TTGGTATTAAAAGAATGAAA+AGG | + | chr3_3:1302558-1302577 | None:intergenic | 20.0% |
| !! | TAATCAAACTTAAATTACCA+TGG | + | chr3_3:1302738-1302757 | None:intergenic | 20.0% |
| !! | ATCATTCATGTAAAATATAG+GGG | + | chr3_3:1302924-1302943 | None:intergenic | 20.0% |
| !! | GTATCATTCATGTAAAATAT+AGG | + | chr3_3:1302926-1302945 | None:intergenic | 20.0% |
| !! | AGATTTAGGAAAAAAACAAT+CGG | + | chr3_3:1303255-1303274 | None:intergenic | 20.0% |
| !!! | ATACTTGATAATAATATGAG+AGG | + | chr3_3:1303509-1303528 | None:intergenic | 20.0% |
| !! | TATATAAACATCATTCATGT+GGG | + | chr3_3:1303599-1303618 | None:intergenic | 20.0% |
| ! | GAGATTAAATTGAATTCGTT+CGG | + | chr3_3:1297934-1297953 | None:intergenic | 25.0% |
| !!! | TCCTCTTTTGATTGATTTAT+TGG | - | chr3_3:1298044-1298063 | Msa0437540:CDS | 25.0% |
| ! | TCCAATAAATCAATCAAAAG+AGG | + | chr3_3:1298048-1298067 | None:intergenic | 25.0% |
| ! | ATCATTAACAGGTAAGATTA+GGG | + | chr3_3:1298160-1298179 | None:intergenic | 25.0% |
| ! | TATCATTAACAGGTAAGATT+AGG | + | chr3_3:1298161-1298180 | None:intergenic | 25.0% |
| !!! | CACTTTTTATGTGTATTTGT+TGG | - | chr3_3:1298368-1298387 | Msa0437540:CDS | 25.0% |
| ! | ATGTAGTAATTTGAGAAAAC+TGG | + | chr3_3:1298562-1298581 | None:intergenic | 25.0% |
| ! | TGATGTTGAGGATAATAAAA+AGG | - | chr3_3:1298990-1299009 | Msa0437540:intron | 25.0% |
| ! | GATGTTGAGGATAATAAAAA+GGG | - | chr3_3:1298991-1299010 | Msa0437540:intron | 25.0% |
| ! | ATACTCATAACAATTACATG+TGG | + | chr3_3:1299210-1299229 | None:intergenic | 25.0% |
| ! | CAATAACCATTACAATTACA+TGG | + | chr3_3:1299249-1299268 | None:intergenic | 25.0% |
| ! | CATGTAATTGTAATGGTTAT+TGG | - | chr3_3:1299247-1299266 | Msa0437540:CDS | 25.0% |
| ! | TAATCAATGACAATCAGATT+TGG | + | chr3_3:1299399-1299418 | None:intergenic | 25.0% |
| !! | GTTTAAGATCTAAATCAAAC+AGG | - | chr3_3:1299432-1299451 | Msa0437540:intron | 25.0% |
| !! | AATTTTCCCCATGAATATTT+TGG | - | chr3_3:1299651-1299670 | Msa0437540:intron | 25.0% |
| ! | GAATAACCAAAATATTCATG+GGG | + | chr3_3:1299660-1299679 | None:intergenic | 25.0% |
| !!! | ATTCTAGAGCAAATATTGAA+AGG | - | chr3_3:1299676-1299695 | Msa0437540:intron | 25.0% |
| ! | TTATTAGTTCAACTATGTTG+TGG | + | chr3_3:1300146-1300165 | None:intergenic | 25.0% |
| !! | AAACTTTATGTTCTTTAAGG+CGG | - | chr3_3:1301091-1301110 | Msa0437540:intron | 25.0% |
| ! | ACTAAAACAACATGGAAATT+AGG | + | chr3_3:1301168-1301187 | None:intergenic | 25.0% |
| ! | TTTATATGAGGGTTTATACT+AGG | - | chr3_3:1301219-1301238 | Msa0437540:intron | 25.0% |
| ! | TTTATGACTTTAAACTTGCA+AGG | - | chr3_3:1301361-1301380 | Msa0437540:intron | 25.0% |
| ! | AAGTATTAAATGGTATGTTG+TGG | - | chr3_3:1301768-1301787 | Msa0437540:intron | 25.0% |
| ! | ATACTAATTTGGCAATATTG+TGG | - | chr3_3:1302091-1302110 | Msa0437540:intron | 25.0% |
| ! | CAAGATAAAAAATACTGCTT+GGG | + | chr3_3:1302201-1302220 | None:intergenic | 25.0% |
| ! | ACAAGATAAAAAATACTGCT+TGG | + | chr3_3:1302202-1302221 | None:intergenic | 25.0% |
| ! | CCTAGAAATAAATAATGAGA+TGG | + | chr3_3:1302305-1302324 | None:intergenic | 25.0% |
| !! | CCATCTCATTATTTATTTCT+AGG | - | chr3_3:1302302-1302321 | Msa0437540:intron | 25.0% |
| ! | CATCTTACTATTGTTAACAT+TGG | - | chr3_3:1302596-1302615 | Msa0437540:intron | 25.0% |
| ! | TACTATTTGAGAGAGAAAAA+TGG | + | chr3_3:1302632-1302651 | None:intergenic | 25.0% |
| ! | AGTAAGCATGAATTTAAACA+CGG | - | chr3_3:1302648-1302667 | Msa0437540:intron | 25.0% |
| ! | TCATTCATGTAAAATATAGG+GGG | + | chr3_3:1302923-1302942 | None:intergenic | 25.0% |
| !! | GTTAAATTTTGTCAATTGTC+TGG | - | chr3_3:1303171-1303190 | Msa0437540:CDS | 25.0% |
| !!! | GTTTTAGAATATTGAGTGAT+TGG | + | chr3_3:1303200-1303219 | None:intergenic | 25.0% |
| ! | AAACTAAAAGAAACTTCCTA+TGG | - | chr3_3:1303216-1303235 | Msa0437540:intron | 25.0% |
| ! | GAACTTAGTATGAAAGATTT+AGG | + | chr3_3:1303269-1303288 | None:intergenic | 25.0% |
| ! | TGAATTACTTCTGATGTAAA+AGG | + | chr3_3:1303300-1303319 | None:intergenic | 25.0% |
| ! | TTTGGAAAACAAATTAAAGG+AGG | - | chr3_3:1303331-1303350 | Msa0437540:intron | 25.0% |
| ! | GTATATAAACATCATTCATG+TGG | + | chr3_3:1303600-1303619 | None:intergenic | 25.0% |
| ! | ATAGAAACCTATGAATTTGT+AGG | + | chr3_3:1303685-1303704 | None:intergenic | 25.0% |
| !! | ATATTGTCTTTAATTTCTGG+AGG | + | chr3_3:1304036-1304055 | None:intergenic | 25.0% |
| !! | GGAATATTGTCTTTAATTTC+TGG | + | chr3_3:1304039-1304058 | None:intergenic | 25.0% |
| !!! | ATATTTTGAGCTAATATAGC+CGG | + | chr3_3:1304236-1304255 | None:intergenic | 25.0% |
| ! | AACACAAATAATCATGTCAT+GGG | + | chr3_3:1304295-1304314 | None:intergenic | 25.0% |
| ! | GCATGGTGATTTGATTTAAT+AGG | - | chr3_3:1297788-1297807 | Msa0437540:three_prime_UTR | 30.0% |
| ! | TGGTGATTTGATTTAATAGG+AGG | - | chr3_3:1297791-1297810 | Msa0437540:three_prime_UTR | 30.0% |
| !!! | TCTTTCCTTGTTTTGTTTAC+GGG | + | chr3_3:1297818-1297837 | None:intergenic | 30.0% |
| !!! | CTCTTTCCTTGTTTTGTTTA+CGG | + | chr3_3:1297819-1297838 | None:intergenic | 30.0% |
| AACAAAACAAGGAAAGAGTT+AGG | - | chr3_3:1297821-1297840 | Msa0437540:three_prime_UTR | 30.0% | |
| ACAAAACAAGGAAAGAGTTA+GGG | - | chr3_3:1297822-1297841 | Msa0437540:three_prime_UTR | 30.0% | |
| TTATTCATTTCCCATTTGGA+TGG | + | chr3_3:1297867-1297886 | None:intergenic | 30.0% | |
| ! | GATTGATTTATTGGAAATGG+CGG | - | chr3_3:1298053-1298072 | Msa0437540:CDS | 30.0% |
| ! | ATTGATTTATTGGAAATGGC+GGG | - | chr3_3:1298054-1298073 | Msa0437540:CDS | 30.0% |
| ACACTGATACTATCATTAAC+AGG | + | chr3_3:1298171-1298190 | None:intergenic | 30.0% | |
| ! | TGTGTATTTGTTGGATTCAT+TGG | - | chr3_3:1298377-1298396 | Msa0437540:CDS | 30.0% |
| ! | TGAGTTTTTCTCGAATTCAT+TGG | - | chr3_3:1298481-1298500 | Msa0437540:intron | 30.0% |
| TTATGAGTATGCCAACAAAT+TGG | - | chr3_3:1299220-1299239 | Msa0437540:CDS | 30.0% | |
| TTACATGGAATCCAATTTGT+TGG | + | chr3_3:1299234-1299253 | None:intergenic | 30.0% | |
| TGGATTCCATGTAATTGTAA+TGG | - | chr3_3:1299240-1299259 | Msa0437540:CDS | 30.0% | |
| TAATTGTAATGGTTATTGGC+CGG | - | chr3_3:1299251-1299270 | Msa0437540:CDS | 30.0% | |
| CATAAGTTTGAGCATAATGT+GGG | - | chr3_3:1299351-1299370 | Msa0437540:intron | 30.0% | |
| AGTTGCATGTTACAAGAAAT+AGG | - | chr3_3:1299472-1299491 | Msa0437540:intron | 30.0% | |
| TGTTACAAGAAATAGGTTTG+AGG | - | chr3_3:1299479-1299498 | Msa0437540:intron | 30.0% | |
| TAAGAAGAAAATTAGAGGGA+AGG | - | chr3_3:1299568-1299587 | Msa0437540:intron | 30.0% | |
| AAGAAGAAAATTAGAGGGAA+GGG | - | chr3_3:1299569-1299588 | Msa0437540:intron | 30.0% | |
| TTATCTCATTATCCAAACTC+AGG | - | chr3_3:1299614-1299633 | Msa0437540:intron | 30.0% | |
| TTCATGAATAAACTTTGACC+AGG | - | chr3_3:1299702-1299721 | Msa0437540:intron | 30.0% | |
| !! | ATATTGGCCTTGGATAATAA+AGG | - | chr3_3:1299773-1299792 | Msa0437540:CDS | 30.0% |
| !! | TATTGGCCTTGGATAATAAA+GGG | - | chr3_3:1299774-1299793 | Msa0437540:CDS | 30.0% |
| CTTGTGTAAAAAACATGGTA+AGG | - | chr3_3:1299870-1299889 | Msa0437540:intron | 30.0% | |
| ! | ACTTGTCTTTTTATGAGTGT+TGG | + | chr3_3:1300102-1300121 | None:intergenic | 30.0% |
| ATTCAACACATCAGATTCTA+AGG | + | chr3_3:1300449-1300468 | None:intergenic | 30.0% | |
| ACTATAATAGATTGAATCGG+TGG | - | chr3_3:1300532-1300551 | Msa0437540:intron | 30.0% | |
| ! | ATTTGTTTCGGGTACATAAT+CGG | - | chr3_3:1300557-1300576 | Msa0437540:intron | 30.0% |
| !!! | TTCTTGTGGTTTTGTCTTTA+TGG | - | chr3_3:1300740-1300759 | Msa0437540:intron | 30.0% |
| ATCTAAACCGTGTATTAGAT+TGG | - | chr3_3:1300785-1300804 | Msa0437540:intron | 30.0% | |
| CTCAATTATGGCTACAAATA+CGG | + | chr3_3:1300871-1300890 | None:intergenic | 30.0% | |
| GTATTTGTAGCCATAATTGA+GGG | - | chr3_3:1300870-1300889 | Msa0437540:intron | 30.0% | |
| !! | CTTATGTTTTGGATTCATAG+AGG | - | chr3_3:1301028-1301047 | Msa0437540:intron | 30.0% |
| CTACTGTAACTAAAACAACA+TGG | + | chr3_3:1301176-1301195 | None:intergenic | 30.0% | |
| !!! | TTGTTTTAGTTACAGTAGCA+TGG | - | chr3_3:1301178-1301197 | Msa0437540:intron | 30.0% |
| TGATATTTATAGGAGGAGAA+TGG | - | chr3_3:1301593-1301612 | Msa0437540:intron | 30.0% | |
| !! | ACTTGTTATTGTTATTGCTG+TGG | - | chr3_3:1301664-1301683 | Msa0437540:intron | 30.0% |
| TATGTGAAGCTCATATATTC+TGG | - | chr3_3:1301798-1301817 | Msa0437540:intron | 30.0% | |
| !! | TTGCCTTGTTATTCTCTAAT+AGG | - | chr3_3:1301871-1301890 | Msa0437540:intron | 30.0% |
| TTTGCTTCCTAATGTGTTAA+TGG | - | chr3_3:1302128-1302147 | Msa0437540:intron | 30.0% | |
| ! | AATGTGATAATGTAGATCCA+TGG | + | chr3_3:1302254-1302273 | None:intergenic | 30.0% |
| !! | TTTATTTCTAGGTTAGCTCT+CGG | - | chr3_3:1302313-1302332 | Msa0437540:intron | 30.0% |
| !!! | GAAAAGGTTTTAGGAAAAGA+GGG | + | chr3_3:1302542-1302561 | None:intergenic | 30.0% |
| !!! | TGAAAAGGTTTTAGGAAAAG+AGG | + | chr3_3:1302543-1302562 | None:intergenic | 30.0% |
| TAGTAAGATGCTTGAAAGTA+GGG | + | chr3_3:1302586-1302605 | None:intergenic | 30.0% | |
| ATAGTAAGATGCTTGAAAGT+AGG | + | chr3_3:1302587-1302606 | None:intergenic | 30.0% | |
| TTTCTCATTTGAACCACAAT+AGG | - | chr3_3:1302775-1302794 | Msa0437540:intron | 30.0% | |
| GTGAAAAAGATGCAAAATCA+CGG | + | chr3_3:1302847-1302866 | None:intergenic | 30.0% | |
| CAACTATTCTATTTCACTTC+AGG | - | chr3_3:1303044-1303063 | Msa0437540:CDS | 30.0% | |
| AAGAAAGTAATTCAAACCTG+TGG | + | chr3_3:1303112-1303131 | None:intergenic | 30.0% | |
| ACAGGTTTGAATTACTTTCT+TGG | - | chr3_3:1303111-1303130 | Msa0437540:CDS | 30.0% | |
| AATTGACAAAATTTAACCCC+AGG | + | chr3_3:1303168-1303187 | None:intergenic | 30.0% | |
| CGGATATTATAAAACACCAT+AGG | + | chr3_3:1303235-1303254 | None:intergenic | 30.0% | |
| TTAAACCTTTACTCCATAAC+TGG | - | chr3_3:1303541-1303560 | Msa0437540:intron | 30.0% | |
| ! | GGGTATTATATGCATTTTCA+GGG | + | chr3_3:1303579-1303598 | None:intergenic | 30.0% |
| ! | TGGGTATTATATGCATTTTC+AGG | + | chr3_3:1303580-1303599 | None:intergenic | 30.0% |
| ! | GTTTATATACACAGCTTGTT+TGG | - | chr3_3:1303610-1303629 | Msa0437540:intron | 30.0% |
| ACTAACACCTACAAATTCAT+AGG | - | chr3_3:1303675-1303694 | Msa0437540:intron | 30.0% | |
| AAGCAACTTCTGAATCAAAA+GGG | + | chr3_3:1303803-1303822 | None:intergenic | 30.0% | |
| AAAGCAACTTCTGAATCAAA+AGG | + | chr3_3:1303804-1303823 | None:intergenic | 30.0% | |
| !!! | AACAGGTGCTTTTTAAGTTT+TGG | - | chr3_3:1303853-1303872 | Msa0437540:intron | 30.0% |
| ! | TATTCCATCACAAAAGTACA+AGG | - | chr3_3:1304053-1304072 | Msa0437540:exon | 30.0% |
| ! | ATTCCATCACAAAAGTACAA+GGG | - | chr3_3:1304054-1304073 | Msa0437540:exon | 30.0% |
| ! | ATTTCCCATGTACCTTATTT+GGG | + | chr3_3:1304174-1304193 | None:intergenic | 30.0% |
| TATTTCCCATGTACCTTATT+TGG | + | chr3_3:1304175-1304194 | None:intergenic | 30.0% | |
| ATGAAGAATAGATCAACCAT+GGG | + | chr3_3:1304200-1304219 | None:intergenic | 30.0% | |
| AATGAAGAATAGATCAACCA+TGG | + | chr3_3:1304201-1304220 | None:intergenic | 30.0% | |
| TGGTTGATCTATTCTTCATT+AGG | - | chr3_3:1304201-1304220 | Msa0437540:five_prime_UTR | 30.0% | |
| GAACACAAATAATCATGTCA+TGG | + | chr3_3:1304296-1304315 | None:intergenic | 30.0% | |
| AAAAACAGAAACTGTGAACT+TGG | + | chr3_3:1304322-1304341 | None:intergenic | 30.0% | |
| GCTCAGGAGAATTAAATTAA+AGG | + | chr3_3:1304439-1304458 | None:intergenic | 30.0% | |
| AGAAGAGAATCCATCCAAAT+GGG | - | chr3_3:1297854-1297873 | Msa0437540:three_prime_UTR | 35.0% | |
| ATACTTGATCACAGCAATGT+TGG | + | chr3_3:1298118-1298137 | None:intergenic | 35.0% | |
| ACATTGCTGTGATCAAGTAT+TGG | - | chr3_3:1298118-1298137 | Msa0437540:CDS | 35.0% | |
| CATTGCTGTGATCAAGTATT+GGG | - | chr3_3:1298119-1298138 | Msa0437540:CDS | 35.0% | |
| ! | ATTGCTGTGATCAAGTATTG+GGG | - | chr3_3:1298120-1298139 | Msa0437540:CDS | 35.0% |
| AAAGGAAGGACTAACAGAAA+CGG | + | chr3_3:1298229-1298248 | None:intergenic | 35.0% | |
| ATACGATCTTGTTGAAAGGA+AGG | + | chr3_3:1298243-1298262 | None:intergenic | 35.0% | |
| !! | AACAAGCACTGACAAATACA+CGG | + | chr3_3:1298459-1298478 | None:intergenic | 35.0% |
| !! | ATGAAGCACTGAAACATACA+TGG | + | chr3_3:1298748-1298767 | None:intergenic | 35.0% |
| GTCTACTACTTGCTTGTTTA+TGG | - | chr3_3:1298777-1298796 | Msa0437540:intron | 35.0% | |
| ! | TTGGTGGAATTTCGTTTTGT+CGG | - | chr3_3:1298896-1298915 | Msa0437540:intron | 35.0% |
| GTGTAGGAAATTTCTCTTTC+CGG | - | chr3_3:1298922-1298941 | Msa0437540:intron | 35.0% | |
| TGTAGGAAATTTCTCTTTCC+GGG | - | chr3_3:1298923-1298942 | Msa0437540:intron | 35.0% | |
| AAGATTCCAGAGCTGTTTAA+GGG | - | chr3_3:1298948-1298967 | Msa0437540:intron | 35.0% | |
| !! | AAAGGGTATTAAGATCACCA+AGG | - | chr3_3:1299008-1299027 | Msa0437540:intron | 35.0% |
| GTGAAAGACTACACAAATAC+CGG | + | chr3_3:1299273-1299292 | None:intergenic | 35.0% | |
| AGATTTCGCAATTTGAGAAC+TGG | + | chr3_3:1299295-1299314 | None:intergenic | 35.0% | |
| CCACATTATGCTCAAACTTA+TGG | + | chr3_3:1299353-1299372 | None:intergenic | 35.0% | |
| CCATAAGTTTGAGCATAATG+TGG | - | chr3_3:1299350-1299369 | Msa0437540:intron | 35.0% | |
| TCAATGACAATCAGATTTGG+TGG | + | chr3_3:1299396-1299415 | None:intergenic | 35.0% | |
| TGCAACTTCAAATCTAATCC+AGG | + | chr3_3:1299459-1299478 | None:intergenic | 35.0% | |
| AGAAATAGGTTTGAGGATCT+TGG | - | chr3_3:1299486-1299505 | Msa0437540:intron | 35.0% | |
| ATCTTGGAATTGTTCGAAGT+AGG | - | chr3_3:1299502-1299521 | Msa0437540:intron | 35.0% | |
| TGATGTGCCATAATAGGATT+GGG | + | chr3_3:1299528-1299547 | None:intergenic | 35.0% | |
| CTTATCATTCTGTCTTAGTC+TGG | + | chr3_3:1299552-1299571 | None:intergenic | 35.0% | |
| CCACCAAGAAAACAAAATCA+CGG | - | chr3_3:1299726-1299745 | Msa0437540:intron | 35.0% | |
| CACCAAGAAAACAAAATCAC+GGG | - | chr3_3:1299727-1299746 | Msa0437540:intron | 35.0% | |
| GATAGATTTCCAGTGGATAT+TGG | - | chr3_3:1299757-1299776 | Msa0437540:CDS | 35.0% | |
| !! | ATTGGCCTTGGATAATAAAG+GGG | - | chr3_3:1299775-1299794 | Msa0437540:CDS | 35.0% |
| TAAAGTTGTTGTCATGTGAC+TGG | - | chr3_3:1299815-1299834 | Msa0437540:intron | 35.0% | |
| AGGCTCTTGTGTAAAAAACA+TGG | - | chr3_3:1299865-1299884 | Msa0437540:intron | 35.0% | |
| TCATCCGAGTCCAATAAAAA+GGG | + | chr3_3:1299970-1299989 | None:intergenic | 35.0% | |
| ATCATCCGAGTCCAATAAAA+AGG | + | chr3_3:1299971-1299990 | None:intergenic | 35.0% | |
| TATTGGACTCGGATGATAAT+TGG | - | chr3_3:1299974-1299993 | Msa0437540:intron | 35.0% | |
| AATACCATACAACGCAATTG+AGG | + | chr3_3:1300000-1300019 | None:intergenic | 35.0% | |
| CGTTGTATGGTATTTGTAGT+TGG | - | chr3_3:1300006-1300025 | Msa0437540:intron | 35.0% | |
| CACTACAATTGAATCCACAA+TGG | + | chr3_3:1300215-1300234 | None:intergenic | 35.0% | |
| AAAAGAAAGAATATCGACGG+CGG | + | chr3_3:1300252-1300271 | None:intergenic | 35.0% | |
| GATTATGTACCCGAAACAAA+TGG | + | chr3_3:1300558-1300577 | None:intergenic | 35.0% | |
| !!! | TTTGGCTTTTCACATTCTTG+TGG | - | chr3_3:1300726-1300745 | Msa0437540:intron | 35.0% |
| !!! | TTGTGGTTTTGTCTTTATGG+AGG | - | chr3_3:1300743-1300762 | Msa0437540:intron | 35.0% |
| AAACCGTGTATTAGATTGGA+TGG | - | chr3_3:1300789-1300808 | Msa0437540:intron | 35.0% | |
| CGTATTTGTAGCCATAATTG+AGG | - | chr3_3:1300869-1300888 | Msa0437540:intron | 35.0% | |
| AATACTTGGTCCCTCAATTA+TGG | + | chr3_3:1300883-1300902 | None:intergenic | 35.0% | |
| ATGAATAAATCTGTCTGTCC+AGG | + | chr3_3:1300991-1301010 | None:intergenic | 35.0% | |
| GTTGTTACTATATACAGGCA+AGG | - | chr3_3:1301444-1301463 | Msa0437540:intron | 35.0% | |
| GGATTTGTGAAGTGGAAAAT+GGG | - | chr3_3:1301498-1301517 | Msa0437540:intron | 35.0% | |
| AGAGCTTGAGAGAAAGAAAT+GGG | + | chr3_3:1301834-1301853 | None:intergenic | 35.0% | |
| AAGAGCTTGAGAGAAAGAAA+TGG | + | chr3_3:1301835-1301854 | None:intergenic | 35.0% | |
| !!! | CTCTCAAGCTCTTTTTAAGT+TGG | - | chr3_3:1301842-1301861 | Msa0437540:intron | 35.0% |
| TCGCCTATTAGAGAATAACA+AGG | + | chr3_3:1301877-1301896 | None:intergenic | 35.0% | |
| ! | TTGTTATTCTCTAATAGGCG+AGG | - | chr3_3:1301876-1301895 | Msa0437540:intron | 35.0% |
| CATTTGGCCATTAACACATT+AGG | + | chr3_3:1302138-1302157 | None:intergenic | 35.0% | |
| CTAATGTGTTAATGGCCAAA+TGG | - | chr3_3:1302136-1302155 | Msa0437540:intron | 35.0% | |
| TTGATACACAAATTGCACGA+AGG | + | chr3_3:1302429-1302448 | None:intergenic | 35.0% | |
| TTTGGCACTATTTCCTATTG+TGG | + | chr3_3:1302791-1302810 | None:intergenic | 35.0% | |
| AATAGGAAATAGTGCCAAAG+AGG | - | chr3_3:1302792-1302811 | Msa0437540:intron | 35.0% | |
| ! | TCCATTTTCAGTATCCTCTT+TGG | + | chr3_3:1302809-1302828 | None:intergenic | 35.0% |
| ACATGAATGATACATCCCAT+AGG | - | chr3_3:1302933-1302952 | Msa0437540:intron | 35.0% | |
| AATTATCAGAGCCTACCTAT+GGG | + | chr3_3:1302951-1302970 | None:intergenic | 35.0% | |
| TAATCAGCATTGTTGACAAG+TGG | - | chr3_3:1303068-1303087 | Msa0437540:CDS | 35.0% | |
| ATATATGTCTCGTATGCAGA+AGG | - | chr3_3:1303136-1303155 | Msa0437540:CDS | 35.0% | |
| TATGCAGAAGGTTTATTCCT+GGG | - | chr3_3:1303148-1303167 | Msa0437540:CDS | 35.0% | |
| CATATCAATGTTCACAGAAC+TGG | + | chr3_3:1303368-1303387 | None:intergenic | 35.0% | |
| GACATTACTGGCATTCAATT+CGG | + | chr3_3:1303399-1303418 | None:intergenic | 35.0% | |
| CACTTGATTGAAGACATTAC+TGG | + | chr3_3:1303411-1303430 | None:intergenic | 35.0% | |
| AAACTCCAGTTATGGAGTAA+AGG | + | chr3_3:1303549-1303568 | None:intergenic | 35.0% | |
| !! | ATATGCATTTTCAGGGACAT+AGG | + | chr3_3:1303572-1303591 | None:intergenic | 35.0% |
| TAGCTTATACGTTTGATGCA+GGG | - | chr3_3:1303737-1303756 | Msa0437540:intron | 35.0% | |
| !! | AACTTAAAAAGCACCTGTTG+AGG | + | chr3_3:1303852-1303871 | None:intergenic | 35.0% |
| TCACCAATAATGTAACTGGA+GGG | + | chr3_3:1303952-1303971 | None:intergenic | 35.0% | |
| CTTGTCACCAATAATGTAAC+TGG | + | chr3_3:1303956-1303975 | None:intergenic | 35.0% | |
| AAGTCAATTGCAAAAGATGC+TGG | - | chr3_3:1303973-1303992 | Msa0437540:CDS | 35.0% | |
| AGTCAATTGCAAAAGATGCT+GGG | - | chr3_3:1303974-1303993 | Msa0437540:CDS | 35.0% | |
| ! | TTGTCTTTAATTTCTGGAGG+TGG | + | chr3_3:1304033-1304052 | None:intergenic | 35.0% |
| ! | TTCCATCACAAAAGTACAAG+GGG | - | chr3_3:1304055-1304074 | Msa0437540:exon | 35.0% |
| CTCTTCTCAACAGTGAAAAT+GGG | - | chr3_3:1304145-1304164 | Msa0437540:five_prime_UTR | 35.0% | |
| TTTCTTAGATGACCCTTTCA+AGG | - | chr3_3:1304257-1304276 | Msa0437540:five_prime_UTR | 35.0% | |
| TGCTCAATTCAATACAGGAA+AGG | + | chr3_3:1304416-1304435 | None:intergenic | 35.0% | |
| !! | AAAGGTGCTCAATTCAATAC+AGG | + | chr3_3:1304421-1304440 | None:intergenic | 35.0% |
| AACAAGGAAAGAGTTAGGGT+AGG | - | chr3_3:1297826-1297845 | Msa0437540:three_prime_UTR | 40.0% | |
| GAGAAGAGAATCCATCCAAA+TGG | - | chr3_3:1297853-1297872 | Msa0437540:three_prime_UTR | 40.0% | |
| CTGAGTAACAGATCTAAGTG+AGG | + | chr3_3:1298015-1298034 | None:intergenic | 40.0% | |
| TTGATCACAGCAATGTTGGT+TGG | + | chr3_3:1298114-1298133 | None:intergenic | 40.0% | |
| CCACATACGATCTTGTTGAA+AGG | + | chr3_3:1298247-1298266 | None:intergenic | 40.0% | |
| CCTTTCAACAAGATCGTATG+TGG | - | chr3_3:1298244-1298263 | Msa0437540:intron | 40.0% | |
| ATGAAGCACAGACACATACA+CGG | + | chr3_3:1298613-1298632 | None:intergenic | 40.0% | |
| !! | TTCGTTTTGTCGGTTAGTGT+AGG | - | chr3_3:1298906-1298925 | Msa0437540:intron | 40.0% |
| GTAGGAAATTTCTCTTTCCG+GGG | - | chr3_3:1298924-1298943 | Msa0437540:intron | 40.0% | |
| TAGGAAATTTCTCTTTCCGG+GGG | - | chr3_3:1298925-1298944 | Msa0437540:intron | 40.0% | |
| GAAGATTCCAGAGCTGTTTA+AGG | - | chr3_3:1298947-1298966 | Msa0437540:intron | 40.0% | |
| TTAAGATCACCAAGGAGGAT+TGG | - | chr3_3:1299016-1299035 | Msa0437540:intron | 40.0% | |
| GATCTAAATCAAACAGGTCC+TGG | - | chr3_3:1299438-1299457 | Msa0437540:intron | 40.0% | |
| AAGTAGGCCCAATCCTATTA+TGG | - | chr3_3:1299518-1299537 | Msa0437540:intron | 40.0% | |
| CTGATGTGCCATAATAGGAT+TGG | + | chr3_3:1299529-1299548 | None:intergenic | 40.0% | |
| ! | TGAAGTCGATTTCCTGAGTT+TGG | + | chr3_3:1299629-1299648 | None:intergenic | 40.0% |
| !!! | TTTTGTTTTCTTGGTGGACC+TGG | + | chr3_3:1299723-1299742 | None:intergenic | 40.0% |
| !!! | CCGTGATTTTGTTTTCTTGG+TGG | + | chr3_3:1299729-1299748 | None:intergenic | 40.0% |
| !!! | TGCCCGTGATTTTGTTTTCT+TGG | + | chr3_3:1299732-1299751 | None:intergenic | 40.0% |
| !! | TTGGCCTTGGATAATAAAGG+GGG | - | chr3_3:1299776-1299795 | Msa0437540:CDS | 40.0% |
| ACAACTTTACCTTTGCACCA+AGG | + | chr3_3:1299804-1299823 | None:intergenic | 40.0% | |
| ! | TTACACAAGAGCCTGTTTTC+AGG | + | chr3_3:1299859-1299878 | None:intergenic | 40.0% |
| TTCTATGACTGCAGCTAATC+TGG | + | chr3_3:1300034-1300053 | None:intergenic | 40.0% | |
| TGAATCCACAATGGTGAGAA+CGG | + | chr3_3:1300206-1300225 | None:intergenic | 40.0% | |
| !! | AAAGAGAAGATTGGTGATGG+CGG | + | chr3_3:1300307-1300326 | None:intergenic | 40.0% |
| GAGAAAGAGAAGATTGGTGA+TGG | + | chr3_3:1300310-1300329 | None:intergenic | 40.0% | |
| GAGAGTGAGAAAGAGAAGAT+TGG | + | chr3_3:1300316-1300335 | None:intergenic | 40.0% | |
| ACTTCTGGTGTCTGGAAATT+TGG | - | chr3_3:1300708-1300727 | Msa0437540:intron | 40.0% | |
| CCACCATCCAATCTAATACA+CGG | + | chr3_3:1300795-1300814 | None:intergenic | 40.0% | |
| GATTCACTGCAGTTAGTGAA+AGG | + | chr3_3:1300843-1300862 | None:intergenic | 40.0% | |
| !! | TACATGGCGGAGTATTGAAT+TGG | + | chr3_3:1300959-1300978 | None:intergenic | 40.0% |
| CAGGAAAAAGTTCTACATGG+CGG | + | chr3_3:1300972-1300991 | None:intergenic | 40.0% | |
| GTCCAGGAAAAAGTTCTACA+TGG | + | chr3_3:1300975-1300994 | None:intergenic | 40.0% | |
| AGTTACAGTAGCATGGTTCT+TGG | - | chr3_3:1301185-1301204 | Msa0437540:intron | 40.0% | |
| ! | TGTTTTGCAGTTTATGCCCT+GGG | - | chr3_3:1301275-1301294 | Msa0437540:intron | 40.0% |
| ! | ACTTGCAAGGTGTTATGACT+TGG | - | chr3_3:1301374-1301393 | Msa0437540:intron | 40.0% |
| !! | CAAGGTGTTATGACTTGGTT+TGG | - | chr3_3:1301379-1301398 | Msa0437540:intron | 40.0% |
| ACTATATACAGGCAAGGATC+AGG | - | chr3_3:1301450-1301469 | Msa0437540:intron | 40.0% | |
| AGTGCTTGTCGTAGCTTATT+TGG | - | chr3_3:1301474-1301493 | Msa0437540:intron | 40.0% | |
| GTGCTTGTCGTAGCTTATTT+GGG | - | chr3_3:1301475-1301494 | Msa0437540:intron | 40.0% | |
| TGCTTGTCGTAGCTTATTTG+GGG | - | chr3_3:1301476-1301495 | Msa0437540:intron | 40.0% | |
| TATTTGGGGGATTTGTGAAG+TGG | - | chr3_3:1301490-1301509 | Msa0437540:intron | 40.0% | |
| GGGATTTGTGAAGTGGAAAA+TGG | - | chr3_3:1301497-1301516 | Msa0437540:intron | 40.0% | |
| ! | GAATGGAAGTGATAGTCTTG+CGG | - | chr3_3:1301610-1301629 | Msa0437540:intron | 40.0% |
| ! | GAGAGTCGACTTCAAATCAA+AGG | + | chr3_3:1301926-1301945 | None:intergenic | 40.0% |
| TCCATTTCATCTAAGCACCA+TGG | - | chr3_3:1302234-1302253 | Msa0437540:intron | 40.0% | |
| TCCATGGTGCTTAGATGAAA+TGG | + | chr3_3:1302238-1302257 | None:intergenic | 40.0% | |
| ! | GCTTTTACAGCATAGAGCAA+AGG | - | chr3_3:1302389-1302408 | Msa0437540:intron | 40.0% |
| CACAAATTGCACGAAGGAAA+GGG | + | chr3_3:1302423-1302442 | None:intergenic | 40.0% | |
| ACACAAATTGCACGAAGGAA+AGG | + | chr3_3:1302424-1302443 | None:intergenic | 40.0% | |
| !!! | AGGTTTTAGGAAAAGAGGGA+GGG | + | chr3_3:1302538-1302557 | None:intergenic | 40.0% |
| !!! | AAGGTTTTAGGAAAAGAGGG+AGG | + | chr3_3:1302539-1302558 | None:intergenic | 40.0% |
| TAAGATGCTTGAAAGTAGGG+AGG | + | chr3_3:1302583-1302602 | None:intergenic | 40.0% | |
| GCCAAAGAGGATACTGAAAA+TGG | - | chr3_3:1302805-1302824 | Msa0437540:intron | 40.0% | |
| TGCAAAATCACGGTTTCGAA+TGG | + | chr3_3:1302837-1302856 | None:intergenic | 40.0% | |
| TGCATGAAACTGGTTGCTAT+CGG | + | chr3_3:1302882-1302901 | None:intergenic | 40.0% | |
| GAATGATACATCCCATAGGT+AGG | - | chr3_3:1302937-1302956 | Msa0437540:intron | 40.0% | |
| CAATTATCAGAGCCTACCTA+TGG | + | chr3_3:1302952-1302971 | None:intergenic | 40.0% | |
| GTATGCAGAAGGTTTATTCC+TGG | - | chr3_3:1303147-1303166 | Msa0437540:CDS | 40.0% | |
| ATGCAGAAGGTTTATTCCTG+GGG | - | chr3_3:1303149-1303168 | Msa0437540:CDS | 40.0% | |
| ATGCACTTCATCACATTAGC+TGG | + | chr3_3:1303441-1303460 | None:intergenic | 40.0% | |
| GACATAGGAAACTCCAGTTA+TGG | + | chr3_3:1303557-1303576 | None:intergenic | 40.0% | |
| !!! | AACTTCTAGTTTTGACGTGC+AGG | - | chr3_3:1303714-1303733 | Msa0437540:intron | 40.0% |
| GTAGCTTATACGTTTGATGC+AGG | - | chr3_3:1303736-1303755 | Msa0437540:intron | 40.0% | |
| ! | CGGTTCTAATTGCACGTAAT+AGG | - | chr3_3:1303767-1303786 | Msa0437540:intron | 40.0% |
| TGAGGTCATCTGAATTTGGA+GGG | + | chr3_3:1303834-1303853 | None:intergenic | 40.0% | |
| TTGAGGTCATCTGAATTTGG+AGG | + | chr3_3:1303835-1303854 | None:intergenic | 40.0% | |
| CTGTTGAGGTCATCTGAATT+TGG | + | chr3_3:1303838-1303857 | None:intergenic | 40.0% | |
| CAAATTCAGATGACCTCAAC+AGG | - | chr3_3:1303836-1303855 | Msa0437540:intron | 40.0% | |
| CTTCCCTCCAGTTACATTAT+TGG | - | chr3_3:1303946-1303965 | Msa0437540:CDS | 40.0% | |
| GTCACCAATAATGTAACTGG+AGG | + | chr3_3:1303953-1303972 | None:intergenic | 40.0% | |
| ! | TCTTTAATTTCTGGAGGTGG+TGG | + | chr3_3:1304030-1304049 | None:intergenic | 40.0% |
| ! | TCCATCACAAAAGTACAAGG+GGG | - | chr3_3:1304056-1304075 | Msa0437540:exon | 40.0% |
| TACTTTATATGCACCAGACC+AGG | - | chr3_3:1304087-1304106 | Msa0437540:five_prime_UTR | 40.0% | |
| CTTTCATCAGTAAGCACAAC+AGG | + | chr3_3:1304120-1304139 | None:intergenic | 40.0% | |
| GCTCTTCTCAACAGTGAAAA+TGG | - | chr3_3:1304144-1304163 | Msa0437540:five_prime_UTR | 40.0% | |
| ! | GAAAATGGGCTTCCCAAATA+AGG | - | chr3_3:1304159-1304178 | Msa0437540:five_prime_UTR | 40.0% |
| GCTTCCCAAATAAGGTACAT+GGG | - | chr3_3:1304167-1304186 | Msa0437540:five_prime_UTR | 40.0% | |
| GTACATGGGAAATATTCCCA+TGG | - | chr3_3:1304181-1304200 | Msa0437540:five_prime_UTR | 40.0% | |
| CTTCATTAGGCTTATCTGTC+CGG | - | chr3_3:1304214-1304233 | Msa0437540:five_prime_UTR | 40.0% | |
| TACAACAGGCTTCCTTGAAA+GGG | + | chr3_3:1304272-1304291 | None:intergenic | 40.0% | |
| AATCATGTCATGGGTACAAC+AGG | + | chr3_3:1304286-1304305 | None:intergenic | 40.0% | |
| AAGTTGAACTAGCAAAGCTC+AGG | + | chr3_3:1304455-1304474 | None:intergenic | 40.0% | |
| GAGGTCCCGTAAACAAAACA+AGG | - | chr3_3:1297810-1297829 | Msa0437540:three_prime_UTR | 45.0% | |
| AAGCAGCAGTACAACGAAGA+AGG | - | chr3_3:1297905-1297924 | Msa0437540:three_prime_UTR | 45.0% | |
| AGCAGCAGTACAACGAAGAA+GGG | - | chr3_3:1297906-1297925 | Msa0437540:three_prime_UTR | 45.0% | |
| ACTAACAGAAACGGTGGTAG+TGG | + | chr3_3:1298220-1298239 | None:intergenic | 45.0% | |
| CAAGATCGTATGTGGCTCAA+TGG | - | chr3_3:1298252-1298271 | Msa0437540:intron | 45.0% | |
| ! | GACACTAACACTAGCACTGA+TGG | + | chr3_3:1298419-1298438 | None:intergenic | 45.0% |
| GTTAGTGTCAATGTCCTGTC+TGG | - | chr3_3:1298430-1298449 | Msa0437540:intron | 45.0% | |
| GTCAGTATTAGTGTCGTGTC+TGG | - | chr3_3:1298719-1298738 | Msa0437540:intron | 45.0% | |
| GGGTATTAAGATCACCAAGG+AGG | - | chr3_3:1299011-1299030 | Msa0437540:intron | 45.0% | |
| ! | CAATTTGCTCCAATCCTCCT+TGG | + | chr3_3:1299028-1299047 | None:intergenic | 45.0% |
| ! | ATAATGTGGGCTGCATTGCA+TGG | - | chr3_3:1299364-1299383 | Msa0437540:intron | 45.0% |
| ! | TAATGTGGGCTGCATTGCAT+GGG | - | chr3_3:1299365-1299384 | Msa0437540:intron | 45.0% |
| TCTGGCTGATGTGCCATAAT+AGG | + | chr3_3:1299534-1299553 | None:intergenic | 45.0% | |
| CAGTGACGATAGATTTCCAG+TGG | - | chr3_3:1299750-1299769 | Msa0437540:CDS | 45.0% | |
| ! | TTTCCAGTGGATATTGGCCT+TGG | - | chr3_3:1299763-1299782 | Msa0437540:CDS | 45.0% |
| TATCCAAGGCCAATATCCAC+TGG | + | chr3_3:1299769-1299788 | None:intergenic | 45.0% | |
| ! | TGGCCTTGGATAATAAAGGG+GGG | - | chr3_3:1299777-1299796 | Msa0437540:CDS | 45.0% |
| GTTGTTGTCATGTGACTGGA+AGG | - | chr3_3:1299819-1299838 | Msa0437540:intron | 45.0% | |
| CAGGTTCAAGTCCTGAAAAC+AGG | - | chr3_3:1299845-1299864 | Msa0437540:intron | 45.0% | |
| GCTGCGTACAATTCACCAAT+TGG | - | chr3_3:1299892-1299911 | Msa0437540:intron | 45.0% | |
| GCGTACAATTCACCAATTGG+CGG | - | chr3_3:1299895-1299914 | Msa0437540:intron | 45.0% | |
| CGTACAATTCACCAATTGGC+GGG | - | chr3_3:1299896-1299915 | Msa0437540:intron | 45.0% | |
| CTAAAGCTCCTGCATAAGCA+GGG | + | chr3_3:1299935-1299954 | None:intergenic | 45.0% | |
| ACTAAAGCTCCTGCATAAGC+AGG | + | chr3_3:1299936-1299955 | None:intergenic | 45.0% | |
| ! | GCTGCCCTTTTTATTGGACT+CGG | - | chr3_3:1299963-1299982 | Msa0437540:intron | 45.0% |
| TTGGCCTCAATTGCGTTGTA+TGG | - | chr3_3:1299993-1300012 | Msa0437540:intron | 45.0% | |
| GTCTAACTGCAGTGACTGTA+GGG | + | chr3_3:1300057-1300076 | None:intergenic | 45.0% | |
| TGTCTAACTGCAGTGACTGT+AGG | + | chr3_3:1300058-1300077 | None:intergenic | 45.0% | |
| AATGGTGAGAACGGTGAAGA+AGG | + | chr3_3:1300197-1300216 | None:intergenic | 45.0% | |
| GAATCGGTGGCCATTTGTTT+CGG | - | chr3_3:1300545-1300564 | Msa0437540:intron | 45.0% | |
| AATCGGTGGCCATTTGTTTC+GGG | - | chr3_3:1300546-1300565 | Msa0437540:intron | 45.0% | |
| ! | TGTTTCGGGTACATAATCGG+TGG | - | chr3_3:1300560-1300579 | Msa0437540:intron | 45.0% |
| ATTTCCAGACACCAGAAGTC+TGG | + | chr3_3:1300707-1300726 | None:intergenic | 45.0% | |
| CCGTGTATTAGATTGGATGG+TGG | - | chr3_3:1300792-1300811 | Msa0437540:CDS | 45.0% | |
| !! | CGCCATGTAGAACTTTTTCC+TGG | - | chr3_3:1300970-1300989 | Msa0437540:intron | 45.0% |
| ! | CTGTTTTGCAGTTTATGCCC+TGG | - | chr3_3:1301274-1301293 | Msa0437540:intron | 45.0% |
| ! | GTTTTGCAGTTTATGCCCTG+GGG | - | chr3_3:1301276-1301295 | Msa0437540:intron | 45.0% |
| ! | GACATTCATTAGCTTCCCCA+GGG | + | chr3_3:1301294-1301313 | None:intergenic | 45.0% |
| ! | TGACATTCATTAGCTTCCCC+AGG | + | chr3_3:1301295-1301314 | None:intergenic | 45.0% |
| GCTTGTCGTAGCTTATTTGG+GGG | - | chr3_3:1301477-1301496 | Msa0437540:intron | 45.0% | |
| ! | TTTGAAGTCGACTCTCTCAC+TGG | - | chr3_3:1301930-1301949 | Msa0437540:intron | 45.0% |
| AATCTAGCACAGCTGCCATT+TGG | + | chr3_3:1302154-1302173 | None:intergenic | 45.0% | |
| AACAGTATCACGCATTCCTG+AGG | + | chr3_3:1302358-1302377 | None:intergenic | 45.0% | |
| !!! | GTTTTAGGAAAAGAGGGAGG+GGG | + | chr3_3:1302536-1302555 | None:intergenic | 45.0% |
| !!! | GGTTTTAGGAAAAGAGGGAG+GGG | + | chr3_3:1302537-1302556 | None:intergenic | 45.0% |
| AAACTGGTTGCTATCGGTAC+AGG | + | chr3_3:1302876-1302895 | None:intergenic | 45.0% | |
| CCAGACAAACTGCATGAAAC+TGG | + | chr3_3:1302892-1302911 | None:intergenic | 45.0% | |
| CCAGTTTCATGCAGTTTGTC+TGG | - | chr3_3:1302889-1302908 | Msa0437540:intron | 45.0% | |
| TCACAGAACTGGAGATCACA+TGG | + | chr3_3:1303357-1303376 | None:intergenic | 45.0% | |
| GCAAAAGATGCTGGGATCAA+TGG | - | chr3_3:1303982-1304001 | Msa0437540:CDS | 45.0% | |
| TGCTGGGATCAATGGAATAG+AGG | - | chr3_3:1303990-1304009 | Msa0437540:CDS | 45.0% | |
| ! | TCCCCCTTGTACTTTTGTGA+TGG | + | chr3_3:1304060-1304079 | None:intergenic | 45.0% |
| TTATATGCACCAGACCAGGA+AGG | - | chr3_3:1304091-1304110 | Msa0437540:five_prime_UTR | 45.0% | |
| TATATGCACCAGACCAGGAA+GGG | - | chr3_3:1304092-1304111 | Msa0437540:five_prime_UTR | 45.0% | |
| GGCTTCCCAAATAAGGTACA+TGG | - | chr3_3:1304166-1304185 | Msa0437540:five_prime_UTR | 45.0% | |
| GTACAACAGGCTTCCTTGAA+AGG | + | chr3_3:1304273-1304292 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTCTATTATTATT+TGG | + | chr3_3:1297725-1297744 | None:intergenic | 5.0% |
| !! | TAATATATTTAAGTATTAAA+TGG | - | chr3_3:1301758-1301777 | Msa0437540:intron | 5.0% |
| GCAGCAGTACAACGAAGAAG+GGG | - | chr3_3:1297907-1297926 | Msa0437540:three_prime_UTR | 50.0% | |
| !! | TGGAAATGGCGGGTGATAGT+TGG | - | chr3_3:1298064-1298083 | Msa0437540:CDS | 50.0% |
| !! | GGAAATGGCGGGTGATAGTT+GGG | - | chr3_3:1298065-1298084 | Msa0437540:CDS | 50.0% |
| !! | GGGTGATAGTTGGGTACTGA+TGG | - | chr3_3:1298074-1298093 | Msa0437540:CDS | 50.0% |
| GTAGTGGTGCAAAGATGAGC+GGG | + | chr3_3:1298204-1298223 | None:intergenic | 50.0% | |
| ! | GGTAGTGGTGCAAAGATGAG+CGG | + | chr3_3:1298205-1298224 | None:intergenic | 50.0% |
| GGAAGGACTAACAGAAACGG+TGG | + | chr3_3:1298226-1298245 | None:intergenic | 50.0% | |
| TCGTATGTGGCTCAATGGCA+AGG | - | chr3_3:1298257-1298276 | Msa0437540:intron | 50.0% | |
| CAAATACACGGACACCAGAC+AGG | + | chr3_3:1298447-1298466 | None:intergenic | 50.0% | |
| CAGACACGCAACACTAACAC+TGG | + | chr3_3:1298586-1298605 | None:intergenic | 50.0% | |
| GCGCAGAGAGACATATTTCG+TGG | + | chr3_3:1298832-1298851 | None:intergenic | 50.0% | |
| GGATCTCCCTTAAACAGCTC+TGG | + | chr3_3:1298957-1298976 | None:intergenic | 50.0% | |
| TGCAGTGGGGAAGTTGTTGT+AGG | + | chr3_3:1299067-1299086 | None:intergenic | 50.0% | |
| !! | TGGATTGGCTTCATCAGCTG+CGG | - | chr3_3:1299089-1299108 | Msa0437540:intron | 50.0% |
| GGCCTTGGATAATAAAGGGG+GGG | - | chr3_3:1299778-1299797 | Msa0437540:CDS | 50.0% | |
| TCATGTGACTGGAAGGTCAC+AGG | - | chr3_3:1299826-1299845 | Msa0437540:intron | 50.0% | |
| ! | CACCAGGCTGCCCTTTTTAT+TGG | - | chr3_3:1299957-1299976 | Msa0437540:intron | 50.0% |
| GTCCAATAAAAAGGGCAGCC+TGG | + | chr3_3:1299962-1299981 | None:intergenic | 50.0% | |
| AGAAGGTCAGGGGAAAACGT+GGG | + | chr3_3:1300180-1300199 | None:intergenic | 50.0% | |
| AAGAAGGTCAGGGGAAAACG+TGG | + | chr3_3:1300181-1300200 | None:intergenic | 50.0% | |
| AGAACGGTGAAGAAGGTCAG+GGG | + | chr3_3:1300190-1300209 | None:intergenic | 50.0% | |
| GAGAACGGTGAAGAAGGTCA+GGG | + | chr3_3:1300191-1300210 | None:intergenic | 50.0% | |
| TGAGAACGGTGAAGAAGGTC+AGG | + | chr3_3:1300192-1300211 | None:intergenic | 50.0% | |
| CTTCACCGTTCTCACCATTG+TGG | - | chr3_3:1300198-1300217 | Msa0437540:intron | 50.0% | |
| GAGTAGCAGTTCCAGACTTC+TGG | - | chr3_3:1300693-1300712 | Msa0437540:intron | 50.0% | |
| AGTTCCAGACTTCTGGTGTC+TGG | - | chr3_3:1300700-1300719 | Msa0437540:intron | 50.0% | |
| ACCTTGCAATAGCAGACAGC+TGG | + | chr3_3:1301331-1301350 | None:intergenic | 50.0% | |
| ! | CTAGGTTAGCTCTCGGCAAA+AGG | - | chr3_3:1302320-1302339 | Msa0437540:intron | 50.0% |
| AAGGAAACTAGCAGCACCTC+AGG | - | chr3_3:1302339-1302358 | Msa0437540:intron | 50.0% | |
| GCTTGAAAGTAGGGAGGTCT+TGG | + | chr3_3:1302577-1302596 | None:intergenic | 50.0% | |
| CCTGTGGAGCTTCTTCTGAA+CGG | + | chr3_3:1303096-1303115 | None:intergenic | 50.0% | |
| CGTGCAATTAGAACCGCGTT+TGG | + | chr3_3:1303763-1303782 | None:intergenic | 50.0% | |
| ! | TGGAGGGAAGAGAGTTTTGC+AGG | + | chr3_3:1303936-1303955 | None:intergenic | 50.0% |
| ATATGCACCAGACCAGGAAG+GGG | - | chr3_3:1304093-1304112 | Msa0437540:five_prime_UTR | 50.0% | |
| !! | TAGCTTGCTCGTGCAACACG+AGG | + | chr3_3:1297662-1297681 | None:intergenic | 55.0% |
| !! | ACAGCTCTGGAATCTTCCCC+CGG | + | chr3_3:1298944-1298963 | None:intergenic | 55.0% |
| AACAACTTCCCCACTGCAGC+TGG | - | chr3_3:1299069-1299088 | Msa0437540:intron | 55.0% | |
| AAGCCAATCCAGCTGCAGTG+GGG | + | chr3_3:1299080-1299099 | None:intergenic | 55.0% | |
| GAAGCCAATCCAGCTGCAGT+GGG | + | chr3_3:1299081-1299100 | None:intergenic | 55.0% | |
| TGAAGCCAATCCAGCTGCAG+TGG | + | chr3_3:1299082-1299101 | None:intergenic | 55.0% | |
| !! | GGATTGGCTTCATCAGCTGC+GGG | - | chr3_3:1299090-1299109 | Msa0437540:intron | 55.0% |
| GGCCCCCCCTTTATTATCCA+AGG | + | chr3_3:1299783-1299802 | None:intergenic | 55.0% | |
| GGATAATAAAGGGGGGGCCT+TGG | - | chr3_3:1299784-1299803 | Msa0437540:CDS | 55.0% | |
| CATAAGCAGGGTTCGGGAAG+GGG | + | chr3_3:1299923-1299942 | None:intergenic | 55.0% | |
| GCATAAGCAGGGTTCGGGAA+GGG | + | chr3_3:1299924-1299943 | None:intergenic | 55.0% | |
| TGCATAAGCAGGGTTCGGGA+AGG | + | chr3_3:1299925-1299944 | None:intergenic | 55.0% | |
| TTCCCGAACCCTGCTTATGC+AGG | - | chr3_3:1299924-1299943 | Msa0437540:intron | 55.0% | |
| CTCCTGCATAAGCAGGGTTC+GGG | + | chr3_3:1299929-1299948 | None:intergenic | 55.0% | |
| GCTCCTGCATAAGCAGGGTT+CGG | + | chr3_3:1299930-1299949 | None:intergenic | 55.0% | |
| ! | TGCAGGAGCTTTAGTGCACC+AGG | - | chr3_3:1299941-1299960 | Msa0437540:intron | 55.0% |
| AGCCAACGCCAGACAGATGA+CGG | + | chr3_3:1300349-1300368 | None:intergenic | 55.0% | |
| CTGGAACTGCTACTCTGTGC+TGG | + | chr3_3:1300688-1300707 | None:intergenic | 55.0% | |
| GCCAGCTGTCTGCTATTGCA+AGG | - | chr3_3:1301327-1301346 | Msa0437540:intron | 55.0% | |
| CGACTCTCTCACTGGAAGTG+CGG | - | chr3_3:1301938-1301957 | Msa0437540:intron | 55.0% | |
| CCGTTCAGAAGAAGCTCCAC+AGG | - | chr3_3:1303093-1303112 | Msa0437540:CDS | 55.0% | |
| GTTTGATGCAGGGCCAAACG+CGG | - | chr3_3:1303747-1303766 | Msa0437540:intron | 55.0% | |
| CAACATCACACGCGCGAGCA+CGG | + | chr3_3:1298978-1298997 | None:intergenic | 60.0% | |
| TGCTCGCGCGTGTGATGTTG+AGG | - | chr3_3:1298978-1298997 | Msa0437540:intron | 60.0% | |
| CTTCCCCACTGCAGCTGGAT+TGG | - | chr3_3:1299074-1299093 | Msa0437540:intron | 60.0% | |
| GCTGCGGGTTTCGCTTGTCT+TGG | - | chr3_3:1299105-1299124 | Msa0437540:intron | 60.0% | |
| TCTCCCTGCCGTCATCTGTC+TGG | - | chr3_3:1300338-1300357 | Msa0437540:intron | 60.0% | |
| ! | ACGCCAGACAGATGACGGCA+GGG | + | chr3_3:1300344-1300363 | None:intergenic | 60.0% |
| ! | AACGCCAGACAGATGACGGC+AGG | + | chr3_3:1300345-1300364 | None:intergenic | 60.0% |
| TGCCGTCATCTGTCTGGCGT+TGG | - | chr3_3:1300344-1300363 | Msa0437540:intron | 60.0% | |
| !! | CATCTGTCTGGCGTTGGCTG+CGG | - | chr3_3:1300350-1300369 | Msa0437540:intron | 60.0% |
| AAAAGAGGGAGGGGGAGAGG+TGG | + | chr3_3:1302528-1302547 | None:intergenic | 60.0% | |
| AGGAAAAGAGGGAGGGGGAG+AGG | + | chr3_3:1302531-1302550 | None:intergenic | 60.0% | |
| AACAGGTCCCCTTCCTGGTC+TGG | + | chr3_3:1304103-1304122 | None:intergenic | 60.0% | |
| AGCACAACAGGTCCCCTTCC+TGG | + | chr3_3:1304108-1304127 | None:intergenic | 60.0% | |
| GTGCAACACGAGGCCACCGT+GGG | + | chr3_3:1297652-1297671 | None:intergenic | 65.0% | |
| ! | AAGGGGGGGCCTTGGTGCAA+AGG | - | chr3_3:1299792-1299811 | Msa0437540:CDS | 65.0% |
| !! | CTGGCGTTGGCTGCGGACAT+CGG | - | chr3_3:1300357-1300376 | Msa0437540:intron | 65.0% |
| CGTGCAACACGAGGCCACCG+TGG | + | chr3_3:1297653-1297672 | None:intergenic | 70.0% | |
| CGGGAAGGGGTCCCGCCAAT+TGG | + | chr3_3:1299910-1299929 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 1297644 | 1304495 | 1297644 | ID=Msa0437540;Name=Msa0437540 |
| chr3_3 | mRNA | 1297644 | 1304495 | 1297644 | ID=Msa0437540-mRNA-1;Parent=Msa0437540;Name=Msa0437540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=425|1|1|1|0.88|1|10|316|418 |
| chr3_3 | exon | 1297644 | 1298182 | 1297644 | ID=Msa0437540-mRNA-1:exon:122;Parent=Msa0437540-mRNA-1 |
| chr3_3 | exon | 1298282 | 1298403 | 1298282 | ID=Msa0437540-mRNA-1:exon:121;Parent=Msa0437540-mRNA-1 |
| chr3_3 | exon | 1299025 | 1299073 | 1299025 | ID=Msa0437540-mRNA-1:exon:120;Parent=Msa0437540-mRNA-1 |
| chr3_3 | exon | 1299185 | 1299342 | 1299185 | ID=Msa0437540-mRNA-1:exon:119;Parent=Msa0437540-mRNA-1 |
| chr3_3 | exon | 1299729 | 1299815 | 1299729 | ID=Msa0437540-mRNA-1:exon:118;Parent=Msa0437540-mRNA-1 |
| chr3_3 | exon | 1300454 | 1300534 | 1300454 | ID=Msa0437540-mRNA-1:exon:117;Parent=Msa0437540-mRNA-1 |
| chr3_3 | exon | 1300615 | 1300678 | 1300615 | ID=Msa0437540-mRNA-1:exon:116;Parent=Msa0437540-mRNA-1 |
| chr3_3 | exon | 1300791 | 1300854 | 1300791 | ID=Msa0437540-mRNA-1:exon:115;Parent=Msa0437540-mRNA-1 |
| chr3_3 | exon | 1303013 | 1303211 | 1303013 | ID=Msa0437540-mRNA-1:exon:114;Parent=Msa0437540-mRNA-1 |
| chr3_3 | exon | 1303861 | 1304495 | 1303861 | ID=Msa0437540-mRNA-1:exon:113;Parent=Msa0437540-mRNA-1 |
| chr3_3 | five_prime_UTR | 1304071 | 1304495 | 1304071 | ID=Msa0437540-mRNA-1:five_prime_utr;Parent=Msa0437540-mRNA-1 |
| chr3_3 | CDS | 1303861 | 1304070 | 1303861 | ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1 |
| chr3_3 | CDS | 1303013 | 1303211 | 1303013 | ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1 |
| chr3_3 | CDS | 1300791 | 1300854 | 1300791 | ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1 |
| chr3_3 | CDS | 1300615 | 1300678 | 1300615 | ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1 |
| chr3_3 | CDS | 1300454 | 1300534 | 1300454 | ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1 |
| chr3_3 | CDS | 1299729 | 1299815 | 1299729 | ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1 |
| chr3_3 | CDS | 1299185 | 1299342 | 1299185 | ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1 |
| chr3_3 | CDS | 1299025 | 1299073 | 1299025 | ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1 |
| chr3_3 | CDS | 1298282 | 1298403 | 1298282 | ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1 |
| chr3_3 | CDS | 1297960 | 1298182 | 1297960 | ID=Msa0437540-mRNA-1:cds;Parent=Msa0437540-mRNA-1 |
| chr3_3 | three_prime_UTR | 1297644 | 1297959 | 1297644 | ID=Msa0437540-mRNA-1:three_prime_utr;Parent=Msa0437540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
