AlfalfaGEDB | Msa0594250

M. sativa cultivar zhongmu-4 / Msa0594250

KEGG: K08867
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0594250	XP_013455151.1	95.484	620	26	1	1	618	1	620	0.0	1171

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0594250	sp\|Q9SCU5\|WNK5_ARATH	67.548	416	130	3	12	426	13	424	0.0	583

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014280	Msa0594250	0.805394	1.363670e-49	-8.615850e-47
Msa0107830	Msa0594250	0.828577	8.320057e-55	-8.615850e-47
Msa0129290	Msa0594250	0.826736	2.303598e-54	-8.615850e-47
Msa0129770	Msa0594250	0.834609	2.714614e-56	-8.615850e-47
Msa0143640	Msa0594250	0.807359	5.254182e-50	-8.615850e-47
Msa0164350	Msa0594250	0.827640	1.399000e-54	-8.615850e-47
Msa0185100	Msa0594250	0.805694	1.179574e-49	-8.615850e-47
Msa0206200	Msa0594250	-0.813439	2.558116e-51	-8.615850e-47
Msa0390200	Msa0594250	0.824831	6.520567e-54	-8.615850e-47
Msa0506610	Msa0594250	0.821027	5.021877e-53	-8.615850e-47

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0594250	MtrunA17_Chr4g0013051	95.484	620	26	1	1	618	1	620	0.0	1171
Msa0594250	MtrunA17_Chr7g0244601	58.983	629	213	15	1	614	1	599	0.0	685
Msa0594250	MtrunA17_Chr5g0432541	51.741	603	247	11	9	610	12	571	0.0	583
Msa0594250	MtrunA17_Chr6g0455931	50.660	606	254	11	8	610	13	576	0.0	534
Msa0594250	MtrunA17_Chr1g0190951	55.399	426	153	5	14	403	14	438	4.48e-156	466
Msa0594250	MtrunA17_Chr7g0273851	55.245	429	147	6	14	403	14	436	3.30e-155	463
Msa0594250	MtrunA17_Chr1g0205471	53.647	425	155	6	14	403	14	431	9.76e-154	459
Msa0594250	MtrunA17_Chr3g0116811	57.545	391	161	3	14	402	16	403	4.84e-148	441
Msa0594250	MtrunA17_Chr8g0384001	48.724	431	181	5	15	407	19	447	2.28e-141	424
Msa0594250	MtrunA17_Chr3g0119911	53.302	424	166	6	12	406	8	428	6.10e-141	423

Showing 1 to 10 of 274 entries

Previous1 2 3 4 5…28Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0594250	AT3G51630.1	67.548	416	130	3	12	426	13	424	0.0	583
Msa0594250	AT3G51630.2	67.548	416	130	3	12	426	13	424	0.0	583
Msa0594250	AT5G58350.1	50.251	597	251	9	14	610	9	559	0.0	545
Msa0594250	AT5G28080.2	53.089	437	166	4	14	412	15	450	1.89e-157	461
Msa0594250	AT3G48260.1	57.801	391	152	6	14	402	12	391	6.78e-153	451
Msa0594250	AT3G22420.1	53.431	408	171	4	14	404	14	419	1.69e-150	446
Msa0594250	AT3G22420.4	53.431	408	171	4	14	404	85	490	6.56e-150	447
Msa0594250	AT3G22420.5	50.575	435	169	6	14	404	14	446	1.44e-144	432
Msa0594250	AT3G22420.6	49.431	439	173	4	14	404	14	451	1.13e-143	430
Msa0594250	AT3G22420.3	50.575	435	169	6	14	404	85	517	1.18e-143	432

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Find 143 sgRNAs with CRISPR-Local

Find 562 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCAGATGAAGGTGGA+TGG	0.548642	4_2:+21484864	Msa0594250:CDS
AAACATCATCAAGCTTGATT+TGG	0.304885	4_2:-21478861	None:intergenic
AAAGTTGGACTAGGCAATGG+TGG	0.630869	4_2:-21482409	None:intergenic
AAAGTTTATTGGAAAATGTT+TGG	0.335327	4_2:+21482315	Msa0594250:CDS
AAATTACTCTCTTAGAGTGC+CGG	0.550009	4_2:-21479028	None:intergenic
AAATTCTACGAAATTTCATT+TGG	0.385540	4_2:+21477582	Msa0594250:five_prime_UTR
AACAACAATAGCAACCATTG+TGG	0.614471	4_2:+21483106	Msa0594250:CDS
AACTATAGTTCCAACATGGA+GGG	0.558081	4_2:+21482943	Msa0594250:CDS
AAGAATAATGGTTCCCACAA+TGG	0.531337	4_2:-21483120	None:intergenic
AAGAATAGGAGGCAAAGCTC+AGG	0.512877	4_2:+21477832	Msa0594250:CDS

Showing 1 to 10 of 143 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGCTTATAAGATTCAAGTCA+AGG	-	chr4_2:21477727-21477746	None:intergenic	30.0%
TGGTCTATTCTCAAAAAGAA+AGG	-	chr4_2:21478058-21478077	None:intergenic	30.0%
AAAAGTCAAACTAATGTGTG+TGG	-	chr4_2:21478499-21478518	None:intergenic	30.0%
AAACATCATCAAGCTTGATT+TGG	-	chr4_2:21478864-21478883	None:intergenic	30.0%
ATAGGAATATGCTTGTAATG+TGG	-	chr4_2:21479420-21479439	None:intergenic	30.0%
GGTATAATAAGGTAAAAGGT+AGG	-	chr4_2:21479546-21479565	None:intergenic	30.0%
CAAAGATGTTATCACACTTT+AGG	-	chr4_2:21479751-21479770	None:intergenic	30.0%
TGTGATAACATCTTTGTCAA+TGG	+	chr4_2:21479755-21479774	Msa0594250:CDS	30.0%
ATACCTTACTCTTGTATTGT+TGG	+	chr4_2:21480046-21480065	Msa0594250:intron	30.0%
TATTCCTCTTCATACAATTC+TGG	-	chr4_2:21480176-21480195	None:intergenic	30.0%

Showing 1 to 10 of 562 entries

Previous1 2 3 4 5…57Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	21477556	21485032	21477556	ID=Msa0594250;Name=Msa0594250
chr4_2	mRNA	21477556	21485032	21477556	ID=Msa0594250-mRNA-1;Parent=Msa0594250;Name=Msa0594250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=265\|1\|1\|1\|0.71\|0.5\|8\|110\|618
chr4_2	exon	21477556	21477895	21477556	ID=Msa0594250-mRNA-1:exon:5966;Parent=Msa0594250-mRNA-1
chr4_2	exon	21478778	21479043	21478778	ID=Msa0594250-mRNA-1:exon:5967;Parent=Msa0594250-mRNA-1
chr4_2	exon	21479634	21479857	21479634	ID=Msa0594250-mRNA-1:exon:5968;Parent=Msa0594250-mRNA-1
chr4_2	exon	21480153	21480310	21480153	ID=Msa0594250-mRNA-1:exon:5969;Parent=Msa0594250-mRNA-1
chr4_2	exon	21482268	21482592	21482268	ID=Msa0594250-mRNA-1:exon:5970;Parent=Msa0594250-mRNA-1
chr4_2	exon	21482804	21483163	21482804	ID=Msa0594250-mRNA-1:exon:5971;Parent=Msa0594250-mRNA-1
chr4_2	exon	21484450	21484939	21484450	ID=Msa0594250-mRNA-1:exon:5972;Parent=Msa0594250-mRNA-1
chr4_2	exon	21484964	21485032	21484964	ID=Msa0594250-mRNA-1:exon:5973;Parent=Msa0594250-mRNA-1
chr4_2	five_prime_UTR	21477556	21477820	21477556	ID=Msa0594250-mRNA-1:five_prime_utr;Parent=Msa0594250-mRNA-1
chr4_2	CDS	21477821	21477895	21477821	ID=Msa0594250-mRNA-1:cds;Parent=Msa0594250-mRNA-1
chr4_2	CDS	21478778	21479043	21478778	ID=Msa0594250-mRNA-1:cds;Parent=Msa0594250-mRNA-1
chr4_2	CDS	21479634	21479857	21479634	ID=Msa0594250-mRNA-1:cds;Parent=Msa0594250-mRNA-1
chr4_2	CDS	21480153	21480310	21480153	ID=Msa0594250-mRNA-1:cds;Parent=Msa0594250-mRNA-1
chr4_2	CDS	21482268	21482592	21482268	ID=Msa0594250-mRNA-1:cds;Parent=Msa0594250-mRNA-1
chr4_2	CDS	21482804	21483163	21482804	ID=Msa0594250-mRNA-1:cds;Parent=Msa0594250-mRNA-1
chr4_2	CDS	21484450	21484898	21484450	ID=Msa0594250-mRNA-1:cds;Parent=Msa0594250-mRNA-1
chr4_2	three_prime_UTR	21484899	21484939	21484899	ID=Msa0594250-mRNA-1:three_prime_utr;Parent=Msa0594250-mRNA-1
chr4_2	three_prime_UTR	21484964	21485032	21484964	ID=Msa0594250-mRNA-1:three_prime_utr;Parent=Msa0594250-mRNA-1

Gene Sequence

>Msa0594250

ATGTATAAGGGAAGAATAGGAGGCAAAGCTCAGGTTGGATATGTTGAAACGGACCCTTCAGGTCGATATGGACGTTTCAGGGATATCCTTGGCAAAGGAGCTATGAAGGTAGTGTATAGGGCATTTGATGAAGTCCTAGGAATAGAAGTGGCTTGGAACCAAATCAAGCTTGATGATGTTTTTCATTCACCAGATCAACTTCAACGTCTCTATTCAGAGGTTCATCTCCTAAAAAACTTGGATCATGACTCTATCATGACTTTCCATAGTACTTGGATTGATGCCAATTGTAGAACCTTCAACTTCATCACTGAATTGTTCACCTCCGGCACTCTAAGAGAGTATAGAAAGAAGTATCCTCGTGTAGATATCAGAGCAATAAAGAATTGGGCTCGCCAGATTCTAAGTGGTTTGGAGTATTTGCATAGCCATGATCCTCCTGTGATACATAGAGACCTAAAGTGTGATAACATCTTTGTCAATGGCCATATGGGAAAGATCAAGATTGGTGATTTAGGGCTTGCAGCAATTCTTCGTGGCTCCCAACATGCACACAGTGTCATAGGCACACCAGAATTTATGGCACCAGAATTGTATGAAGAGGAATATAATGAGCTGGTAGATATATACTCTTTTGGCATGTGTATGATAGAGTTGTTCACTTCTGAGTTTCCATATAGCGAGTGCTCCAACCCTGCTCAAATATACAAGAAAGTTACTTCTGGGAAGCTACCAAAGGCATTTGACAAGATCCATGATGTAGAAACCCAAAAGTTTATTGGAAAATGTTTGGCAAATGTGTCAGAGAGGTTGTCAGCAAAGGAGCTCTTGATGGACCCTTTTTTAGCTACGGCCCATCATGAACCACCATTGCCTAGTCCAACTTTAGTTAGCAAACATACTCAACAAATCAATTTCAATGCAACAATTGCCAAAGAACAACCTCCATTGAAGGACAAAACAAACAGCACACACATGACAATCACAGGGACTATCAATGAAGAGGATGACACTGTTTTCCTCAAAGTCAAAATTTCTAACAAAAATGGGCACGCAAGAAATATATACTTCCCATTTGACACCAAAAAGGACACTGCCATTGAAGTTGCAAATGAGATGGTCAAAGAACTTGAAATTAGTGACTTGGAACCAATAGAGATTGCTGAGATGATTGAAGAAGAGATATCAACTATAGTTCCAACATGGAGGGATTGTTGCAGTTCTAAGTATCAAAGACAACATAGTTTTATCTATGGTGAAGAAGATGATATTAGTAACGACCATCCTTTCTTGTCACCAACTTCTCGCTCTTCCTCTCATGGTTCTCTCCCAATATTTTGTGCTTCCTATAACAACAATAGCAACCATTGTGGGAACCATTATTCTTTTGCTCAAGATTGGCCACATGATGATCTTCAATATATGAATGATGATGCAAGCTCTCAAAGCTCAATGAATTCCTTTAAGTCTTTCAATTACCATTGCAATGATTTATGCAATGAAGATGAACAATGTTCAAATCTTGTAGAAGGAGAAGAACCCCTTTGTTGCAATCCAAAGGGTCACAACAAATGGACAAGATTTTGTCCTCCAGAAGAGATGGTGGAGGCTGGTTTCACCAAACAGTTTTGTAACAAGAGAATGGATTCTCACACTCACACTCATAGGAATCATCATGGTCAAAGACATGGATGTCAAAGGCTTACAAGGATTAATTCATGTGTTGATGTGAGGAAGCAACAACTACAACGATCATTGATGGAGGAGATGCAAAAGATAAGGATGTTCAACACAGTTGGTGCCGTTGAGAATGTTGGGTTTCAAAATCCAGATGAAGGTGGATGGTTTTCTTCTTGA

Protein sequence

>Msa0594250

MYKGRIGGKAQVGYVETDPSGRYGRFRDILGKGAMKVVYRAFDEVLGIEVAWNQIKLDDVFHSPDQLQRLYSEVHLLKNLDHDSIMTFHSTWIDANCRTFNFITELFTSGTLREYRKKYPRVDIRAIKNWARQILSGLEYLHSHDPPVIHRDLKCDNIFVNGHMGKIKIGDLGLAAILRGSQHAHSVIGTPEFMAPELYEEEYNELVDIYSFGMCMIELFTSEFPYSECSNPAQIYKKVTSGKLPKAFDKIHDVETQKFIGKCLANVSERLSAKELLMDPFLATAHHEPPLPSPTLVSKHTQQINFNATIAKEQPPLKDKTNSTHMTITGTINEEDDTVFLKVKISNKNGHARNIYFPFDTKKDTAIEVANEMVKELEISDLEPIEIAEMIEEEISTIVPTWRDCCSSKYQRQHSFIYGEEDDISNDHPFLSPTSRSSSHGSLPIFCASYNNNSNHCGNHYSFAQDWPHDDLQYMNDDASSQSSMNSFKSFNYHCNDLCNEDEQCSNLVEGEEPLCCNPKGHNKWTRFCPPEEMVEAGFTKQFCNKRMDSHTHTHRNHHGQRHGCQRLTRINSCVDVRKQQLQRSLMEEMQKIRMFNTVGAVENVGFQNPDEGGWFSS*