Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207260 | RHN49902.1 | 92.228 | 193 | 14 | 1 | 1 | 193 | 46 | 237 | 1.59e-127 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207260 | sp|Q67YE6|SAP12_ARATH | 61.272 | 173 | 63 | 1 | 1 | 173 | 1 | 169 | 3.40e-72 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207260 | A0A396H9D4 | 92.228 | 193 | 14 | 1 | 1 | 193 | 46 | 237 | 7.59e-128 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033970 | Msa0207260 | 0.804916 | 1.716410e-49 | -8.615850e-47 |
| Msa0081920 | Msa0207260 | 0.800489 | 1.406851e-48 | -8.615850e-47 |
| Msa0128030 | Msa0207260 | 0.817718 | 2.852073e-52 | -8.615850e-47 |
| Msa0207260 | Msa0253120 | 0.817820 | 2.704661e-52 | -8.615850e-47 |
| Msa0207260 | Msa0291900 | 0.843181 | 1.641312e-58 | -8.615850e-47 |
| Msa0207260 | Msa0291920 | 0.801743 | 7.796910e-49 | -8.615850e-47 |
| Msa0207260 | Msa0329880 | 0.803017 | 4.260012e-49 | -8.615850e-47 |
| Msa0207260 | Msa0414720 | 0.800533 | 1.378429e-48 | -8.615850e-47 |
| Msa0207260 | Msa0459630 | 0.807520 | 4.855226e-50 | -8.615850e-47 |
| Msa0207260 | Msa0481740 | 0.812893 | 3.371675e-51 | -8.615850e-47 |
| Msa0207260 | Msa0481770 | 0.833777 | 4.388343e-56 | -8.615850e-47 |
| Msa0207260 | Msa0652700 | 0.815572 | 8.629572e-52 | -8.615850e-47 |
| Msa0207260 | Msa0841030 | 0.806052 | 9.917089e-50 | -8.615850e-47 |
| Msa0207260 | Msa0870120 | 0.857112 | 2.037855e-62 | -8.615850e-47 |
| Msa0207260 | Msa0935830 | 0.871801 | 5.182522e-67 | -8.615850e-47 |
| Msa0207260 | Msa0973000 | 0.872884 | 2.255761e-67 | -8.615850e-47 |
| Msa0207260 | Msa1080650 | 0.809449 | 1.881664e-50 | -8.615850e-47 |
| Msa0207260 | Msa1126440 | 0.814777 | 1.296275e-51 | -8.615850e-47 |
| Msa0207260 | Msa1453600 | 0.836370 | 9.736094e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207260 | MtrunA17_Chr6g0451591 | 92.228 | 193 | 14 | 1 | 1 | 193 | 46 | 237 | 1.46e-131 | 369 |
| Msa0207260 | MtrunA17_Chr7g0257681 | 46.763 | 139 | 67 | 2 | 5 | 139 | 2 | 137 | 3.60e-38 | 132 |
| Msa0207260 | MtrunA17_Chr1g0173421 | 48.921 | 139 | 64 | 2 | 5 | 139 | 2 | 137 | 4.15e-38 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0207260 | AT3G28210.2 | 61.272 | 173 | 63 | 1 | 1 | 173 | 1 | 169 | 3.45e-73 | 219 |
| Msa0207260 | AT3G28210.1 | 61.272 | 173 | 63 | 1 | 1 | 173 | 1 | 169 | 3.45e-73 | 219 |
| Msa0207260 | AT3G57480.2 | 46.250 | 160 | 79 | 3 | 5 | 160 | 2 | 158 | 1.53e-42 | 143 |
| Msa0207260 | AT3G57480.1 | 46.250 | 160 | 79 | 3 | 5 | 160 | 2 | 158 | 1.53e-42 | 143 |
| Msa0207260 | AT2G41835.1 | 51.079 | 139 | 61 | 3 | 5 | 139 | 2 | 137 | 3.49e-41 | 140 |
| Msa0207260 | AT5G48205.1 | 39.091 | 110 | 34 | 2 | 5 | 108 | 2 | 84 | 3.35e-15 | 70.9 |
Find 47 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGACATTCATGTGACTTAT+AGG | 0.238124 | 2_1:+37943891 | None:intergenic |
| CTGTAAAACTTGCCACATTA+AGG | 0.277586 | 2_1:-37943665 | Msa0207260:CDS |
| TAAGGCTTATTGATTCTATA+TGG | 0.292885 | 2_1:-37943449 | Msa0207260:exon |
| CTGCTGTTGTGGTCTGGTTT+CGG | 0.299904 | 2_1:+37943871 | None:intergenic |
| TTAAAGAAACATCGTAGTTC+AGG | 0.309481 | 2_1:-37943772 | Msa0207260:CDS |
| AAGGACAAATAATAGGTTTC+TGG | 0.312800 | 2_1:-37943557 | Msa0207260:CDS |
| CAAATGCAAGGACAAATAAT+AGG | 0.336795 | 2_1:-37943564 | Msa0207260:CDS |
| TAATAGGTTTCTGGCTGCTT+TGG | 0.338054 | 2_1:-37943548 | Msa0207260:CDS |
| TTGCAGCCATCACATGTAAA+AGG | 0.365120 | 2_1:+37944958 | None:intergenic |
| GCTGCTTTGGCTTCAAGAAA+TGG | 0.396007 | 2_1:-37943535 | Msa0207260:CDS |
| TCCTAGTAATCCTTCTGTTA+AGG | 0.396096 | 2_1:-37943467 | Msa0207260:CDS |
| ATCTCCTTGCAACGCTTCAC+GGG | 0.399170 | 2_1:+37943712 | None:intergenic |
| AATCTCCTTGCAACGCTTCA+CGG | 0.405276 | 2_1:+37943711 | None:intergenic |
| TGGCAATGTTTACCTAAATC+TGG | 0.409207 | 2_1:+37945012 | None:intergenic |
| TGAAGAATGCTCCATGTCTA+TGG | 0.426712 | 2_1:-37943833 | Msa0207260:CDS |
| AAAATTGAAACCATGGCATC+TGG | 0.440831 | 2_1:-37945051 | Msa0207260:exon |
| GTCGGTTTCTTCTTCTTGCT+AGG | 0.441467 | 2_1:+37943739 | None:intergenic |
| TACATGTGATGGCTGCAAAC+AGG | 0.464886 | 2_1:-37944953 | Msa0207260:intron |
| TCGGTTTCTTCTTCTTGCTA+GGG | 0.487824 | 2_1:+37943740 | None:intergenic |
| TTCTGTTCCACCAGATGCCA+TGG | 0.491760 | 2_1:+37945041 | None:intergenic |
| CAACGCTTCACGGGGCAAGT+CGG | 0.495450 | 2_1:+37943721 | None:intergenic |
| TAAAGAAACATCGTAGTTCA+GGG | 0.514380 | 2_1:-37943771 | Msa0207260:CDS |
| TTAAGGTGTGCCTCAAGCAC+CGG | 0.526623 | 2_1:-37943648 | Msa0207260:CDS |
| TATGGTTAATGTGTAATACA+TGG | 0.526900 | 2_1:-37943431 | Msa0207260:three_prime_UTR |
| AGGATTACTAGGAGGAGAAG+TGG | 0.527657 | 2_1:+37943477 | None:intergenic |
| GCCTTAACAGAAGGATTACT+AGG | 0.531652 | 2_1:+37943466 | None:intergenic |
| AAGCATGATCAGCAGCAAAC+CGG | 0.531829 | 2_1:+37943629 | None:intergenic |
| AATATTCAAAATTGAAACCA+TGG | 0.559485 | 2_1:-37945058 | Msa0207260:exon |
| TATGGAGATCACAGGCAACA+TGG | 0.561346 | 2_1:-37943815 | Msa0207260:CDS |
| CAGCAGCAAACCGGTGCTTG+AGG | 0.563456 | 2_1:+37943638 | None:intergenic |
| TAAAAGGAAGGAAATCAAGC+TGG | 0.567522 | 2_1:+37944974 | None:intergenic |
| AATCAATAAGCCTTAACAGA+AGG | 0.575911 | 2_1:+37943457 | None:intergenic |
| TGCAACAGCAGTTGTTGATG+AGG | 0.577728 | 2_1:+37943585 | None:intergenic |
| GCTGATCATGCTTGTAGTAG+AGG | 0.580042 | 2_1:-37943619 | Msa0207260:CDS |
| CAACTGCTGTTGCAAATGCA+AGG | 0.582464 | 2_1:-37943576 | Msa0207260:CDS |
| TCCATGTCTATGGAGATCAC+AGG | 0.587969 | 2_1:-37943823 | Msa0207260:CDS |
| ATTGAAACCATGGCATCTGG+TGG | 0.590996 | 2_1:-37945048 | Msa0207260:exon |
| ATGGAGATCACAGGCAACAT+GGG | 0.594572 | 2_1:-37943814 | Msa0207260:CDS |
| GCTGGTGACAATCAACATGC+TGG | 0.594811 | 2_1:+37944992 | None:intergenic |
| TTGCCCCGTGAAGCGTTGCA+AGG | 0.600506 | 2_1:-37943716 | Msa0207260:CDS |
| ATGGTTAATGTGTAATACAT+GGG | 0.606158 | 2_1:-37943430 | Msa0207260:three_prime_UTR |
| GCCTGTGATCTCCATAGACA+TGG | 0.623654 | 2_1:+37943822 | None:intergenic |
| AGCCATCACATGTAAAAGGA+AGG | 0.626659 | 2_1:+37944962 | None:intergenic |
| GCTTGAGGCACACCTTAATG+TGG | 0.642622 | 2_1:+37943653 | None:intergenic |
| TCTCCTTGCAACGCTTCACG+GGG | 0.654277 | 2_1:+37943713 | None:intergenic |
| TTAACAGAAGGATTACTAGG+AGG | 0.691197 | 2_1:+37943469 | None:intergenic |
| CAACATGGGAGAAAACGAAG+AGG | 0.737384 | 2_1:-37943800 | Msa0207260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACATAATTTATAATAAC+AGG | - | chr2_1:37944556-37944575 | Msa0207260:intron | 10.0% |
| !! | TTAACATAATTTATAATAAC+AGG | - | chr2_1:37944556-37944575 | Msa0207260:intron | 10.0% |
| !! | AGAATTAATTCATGATTAAT+TGG | - | chr2_1:37943728-37943747 | Msa0207260:CDS | 15.0% |
| !! | AAAACTAATTCTTGATTAAT+AGG | - | chr2_1:37944176-37944195 | Msa0207260:intron | 15.0% |
| !! | AGAATTAATTCATGATTAAT+TGG | - | chr2_1:37943728-37943747 | Msa0207260:CDS | 15.0% |
| !! | AAAACTAATTCTTGATTAAT+AGG | - | chr2_1:37944176-37944195 | Msa0207260:intron | 15.0% |
| !! | AATATTCAAAATTGAAACCA+TGG | - | chr2_1:37943433-37943452 | Msa0207260:three_prime_UTR | 20.0% |
| !! | TGTAGTATAATCAAATATGT+TGG | - | chr2_1:37943826-37943845 | Msa0207260:CDS | 20.0% |
| !! | ATTTGACACATTTGAATATA+GGG | + | chr2_1:37943879-37943898 | None:intergenic | 20.0% |
| !!! | TTTTCATTTTAATGGTTTGA+TGG | + | chr2_1:37944351-37944370 | None:intergenic | 20.0% |
| !! | AATATTCAAAATTGAAACCA+TGG | - | chr2_1:37943433-37943452 | Msa0207260:three_prime_UTR | 20.0% |
| !! | TGTAGTATAATCAAATATGT+TGG | - | chr2_1:37943826-37943845 | Msa0207260:CDS | 20.0% |
| !! | ATTTGACACATTTGAATATA+GGG | + | chr2_1:37943879-37943898 | None:intergenic | 20.0% |
| !!! | TTTTCATTTTAATGGTTTGA+TGG | + | chr2_1:37944351-37944370 | None:intergenic | 20.0% |
| ! | CCGACAAATATATAACTAAT+CGG | + | chr2_1:37943595-37943614 | None:intergenic | 25.0% |
| !! | CCGATTAGTTATATATTTGT+CGG | - | chr2_1:37943592-37943611 | Msa0207260:CDS | 25.0% |
| ! | TATAATCAAATATGTTGGTC+CGG | - | chr2_1:37943831-37943850 | Msa0207260:CDS | 25.0% |
| ! | CATAACATATTATTCTTGAC+CGG | + | chr2_1:37943853-37943872 | None:intergenic | 25.0% |
| ! | CATTTGACACATTTGAATAT+AGG | + | chr2_1:37943880-37943899 | None:intergenic | 25.0% |
| ! | TGCAGTATAATCAAATATGT+TGG | - | chr2_1:37944269-37944288 | Msa0207260:intron | 25.0% |
| ! | TATAATCAAATATGTTGGTC+TGG | - | chr2_1:37943831-37943850 | Msa0207260:CDS | 25.0% |
| ! | ATACGATTATGAAACAGAAA+AGG | - | chr2_1:37944530-37944549 | Msa0207260:intron | 25.0% |
| !! | ATAATAACAGGTATTTTGTG+TGG | - | chr2_1:37944568-37944587 | Msa0207260:intron | 25.0% |
| !!! | TAAGGCTTATTGATTCTATA+TGG | - | chr2_1:37945042-37945061 | Msa0207260:CDS | 25.0% |
| ! | TATGGTTAATGTGTAATACA+TGG | - | chr2_1:37945060-37945079 | Msa0207260:exon | 25.0% |
| ! | ATGGTTAATGTGTAATACAT+GGG | - | chr2_1:37945061-37945080 | Msa0207260:exon | 25.0% |
| ! | CCGACAAATATATAACTAAT+CGG | + | chr2_1:37943595-37943614 | None:intergenic | 25.0% |
| !! | CCGATTAGTTATATATTTGT+CGG | - | chr2_1:37943592-37943611 | Msa0207260:CDS | 25.0% |
| ! | TATAATCAAATATGTTGGTC+CGG | - | chr2_1:37943831-37943850 | Msa0207260:CDS | 25.0% |
| ! | CATAACATATTATTCTTGAC+CGG | + | chr2_1:37943853-37943872 | None:intergenic | 25.0% |
| ! | CATTTGACACATTTGAATAT+AGG | + | chr2_1:37943880-37943899 | None:intergenic | 25.0% |
| ! | TGCAGTATAATCAAATATGT+TGG | - | chr2_1:37944269-37944288 | Msa0207260:intron | 25.0% |
| ! | TATAATCAAATATGTTGGTC+TGG | - | chr2_1:37943831-37943850 | Msa0207260:CDS | 25.0% |
| ! | ATACGATTATGAAACAGAAA+AGG | - | chr2_1:37944530-37944549 | Msa0207260:intron | 25.0% |
| !! | ATAATAACAGGTATTTTGTG+TGG | - | chr2_1:37944568-37944587 | Msa0207260:intron | 25.0% |
| !!! | TAAGGCTTATTGATTCTATA+TGG | - | chr2_1:37945042-37945061 | Msa0207260:CDS | 25.0% |
| ! | TATGGTTAATGTGTAATACA+TGG | - | chr2_1:37945060-37945079 | Msa0207260:exon | 25.0% |
| ! | ATGGTTAATGTGTAATACAT+GGG | - | chr2_1:37945061-37945080 | Msa0207260:exon | 25.0% |
| TCACGTGATTAGTAAACTTA+AGG | - | chr2_1:37943915-37943934 | Msa0207260:CDS | 30.0% | |
| TTCAAATGTGTCAAATCATG+TGG | - | chr2_1:37944395-37944414 | Msa0207260:intron | 30.0% | |
| TTAAAGAAACATCGTAGTTC+AGG | - | chr2_1:37944719-37944738 | Msa0207260:intron | 30.0% | |
| TAAAGAAACATCGTAGTTCA+GGG | - | chr2_1:37944720-37944739 | Msa0207260:intron | 30.0% | |
| CAAATGCAAGGACAAATAAT+AGG | - | chr2_1:37944927-37944946 | Msa0207260:intron | 30.0% | |
| AAGGACAAATAATAGGTTTC+TGG | - | chr2_1:37944934-37944953 | Msa0207260:intron | 30.0% | |
| AATCAATAAGCCTTAACAGA+AGG | + | chr2_1:37945037-37945056 | None:intergenic | 30.0% | |
| TCACGTGATTAGTAAACTTA+AGG | - | chr2_1:37943915-37943934 | Msa0207260:CDS | 30.0% | |
| TTCAAATGTGTCAAATCATG+TGG | - | chr2_1:37944395-37944414 | Msa0207260:intron | 30.0% | |
| TTAAAGAAACATCGTAGTTC+AGG | - | chr2_1:37944719-37944738 | Msa0207260:intron | 30.0% | |
| TAAAGAAACATCGTAGTTCA+GGG | - | chr2_1:37944720-37944739 | Msa0207260:intron | 30.0% | |
| CAAATGCAAGGACAAATAAT+AGG | - | chr2_1:37944927-37944946 | Msa0207260:intron | 30.0% | |
| AAGGACAAATAATAGGTTTC+TGG | - | chr2_1:37944934-37944953 | Msa0207260:intron | 30.0% | |
| AATCAATAAGCCTTAACAGA+AGG | + | chr2_1:37945037-37945056 | None:intergenic | 30.0% | |
| AAAATTGAAACCATGGCATC+TGG | - | chr2_1:37943440-37943459 | Msa0207260:exon | 35.0% | |
| ! | ACAGAAGCTTTTCCAGATTT+AGG | - | chr2_1:37943467-37943486 | Msa0207260:CDS | 35.0% |
| TGGCAATGTTTACCTAAATC+TGG | + | chr2_1:37943482-37943501 | None:intergenic | 35.0% | |
| TAAAAGGAAGGAAATCAAGC+TGG | + | chr2_1:37943520-37943539 | None:intergenic | 35.0% | |
| ! | TTCCTTCCTTTTACATGTGA+TGG | - | chr2_1:37943527-37943546 | Msa0207260:CDS | 35.0% |
| ! | CTCTATTTCTTGCAAACTGA+TGG | - | chr2_1:37943975-37943994 | Msa0207260:intron | 35.0% |
| TTAATTCATGACAACCTGCT+TGG | - | chr2_1:37944037-37944056 | Msa0207260:intron | 35.0% | |
| TAATTCATGACAACCTGCTT+GGG | - | chr2_1:37944038-37944057 | Msa0207260:intron | 35.0% | |
| TCCCTCGATGTTAATTTCAA+TGG | - | chr2_1:37944123-37944142 | Msa0207260:intron | 35.0% | |
| CCCATTGAAATTAACATCGA+GGG | + | chr2_1:37944127-37944146 | None:intergenic | 35.0% | |
| CCCTCGATGTTAATTTCAAT+GGG | - | chr2_1:37944124-37944143 | Msa0207260:intron | 35.0% | |
| TCCCATTGAAATTAACATCG+AGG | + | chr2_1:37944128-37944147 | None:intergenic | 35.0% | |
| ! | AAATCATGTGGTTTGAGTTC+AGG | - | chr2_1:37944407-37944426 | Msa0207260:intron | 35.0% |
| TCAGGTGATCAATAAACTTC+AGG | - | chr2_1:37944425-37944444 | Msa0207260:intron | 35.0% | |
| ! | CCAAAGTTTGTTTGAGTCAA+AGG | + | chr2_1:37944485-37944504 | None:intergenic | 35.0% |
| CCTTTGACTCAAACAAACTT+TGG | - | chr2_1:37944482-37944501 | Msa0207260:intron | 35.0% | |
| CTGTAAAACTTGCCACATTA+AGG | - | chr2_1:37944826-37944845 | Msa0207260:intron | 35.0% | |
| CAAGATTGTGCCAAAAAATC+TGG | - | chr2_1:37944980-37944999 | Msa0207260:CDS | 35.0% | |
| !!! | TGAACGAGATCCAGATTTTT+TGG | + | chr2_1:37944993-37945012 | None:intergenic | 35.0% |
| TTAACAGAAGGATTACTAGG+AGG | + | chr2_1:37945025-37945044 | None:intergenic | 35.0% | |
| TCCTAGTAATCCTTCTGTTA+AGG | - | chr2_1:37945024-37945043 | Msa0207260:CDS | 35.0% | |
| AAAATTGAAACCATGGCATC+TGG | - | chr2_1:37943440-37943459 | Msa0207260:exon | 35.0% | |
| ! | ACAGAAGCTTTTCCAGATTT+AGG | - | chr2_1:37943467-37943486 | Msa0207260:CDS | 35.0% |
| TGGCAATGTTTACCTAAATC+TGG | + | chr2_1:37943482-37943501 | None:intergenic | 35.0% | |
| TAAAAGGAAGGAAATCAAGC+TGG | + | chr2_1:37943520-37943539 | None:intergenic | 35.0% | |
| ! | TTCCTTCCTTTTACATGTGA+TGG | - | chr2_1:37943527-37943546 | Msa0207260:CDS | 35.0% |
| ! | CTCTATTTCTTGCAAACTGA+TGG | - | chr2_1:37943975-37943994 | Msa0207260:intron | 35.0% |
| TTAATTCATGACAACCTGCT+TGG | - | chr2_1:37944037-37944056 | Msa0207260:intron | 35.0% | |
| TAATTCATGACAACCTGCTT+GGG | - | chr2_1:37944038-37944057 | Msa0207260:intron | 35.0% | |
| TCCCTCGATGTTAATTTCAA+TGG | - | chr2_1:37944123-37944142 | Msa0207260:intron | 35.0% | |
| CCCATTGAAATTAACATCGA+GGG | + | chr2_1:37944127-37944146 | None:intergenic | 35.0% | |
| CCCTCGATGTTAATTTCAAT+GGG | - | chr2_1:37944124-37944143 | Msa0207260:intron | 35.0% | |
| TCCCATTGAAATTAACATCG+AGG | + | chr2_1:37944128-37944147 | None:intergenic | 35.0% | |
| ! | AAATCATGTGGTTTGAGTTC+AGG | - | chr2_1:37944407-37944426 | Msa0207260:intron | 35.0% |
| TCAGGTGATCAATAAACTTC+AGG | - | chr2_1:37944425-37944444 | Msa0207260:intron | 35.0% | |
| ! | CCAAAGTTTGTTTGAGTCAA+AGG | + | chr2_1:37944485-37944504 | None:intergenic | 35.0% |
| CCTTTGACTCAAACAAACTT+TGG | - | chr2_1:37944482-37944501 | Msa0207260:intron | 35.0% | |
| CTGTAAAACTTGCCACATTA+AGG | - | chr2_1:37944826-37944845 | Msa0207260:intron | 35.0% | |
| CAAGATTGTGCCAAAAAATC+TGG | - | chr2_1:37944980-37944999 | Msa0207260:CDS | 35.0% | |
| !!! | TGAACGAGATCCAGATTTTT+TGG | + | chr2_1:37944993-37945012 | None:intergenic | 35.0% |
| TTAACAGAAGGATTACTAGG+AGG | + | chr2_1:37945025-37945044 | None:intergenic | 35.0% | |
| TCCTAGTAATCCTTCTGTTA+AGG | - | chr2_1:37945024-37945043 | Msa0207260:CDS | 35.0% | |
| AGCCATCACATGTAAAAGGA+AGG | + | chr2_1:37943532-37943551 | None:intergenic | 40.0% | |
| TTGCAGCCATCACATGTAAA+AGG | + | chr2_1:37943536-37943555 | None:intergenic | 40.0% | |
| TGTCGGAACGATTCTTGATT+AGG | - | chr2_1:37943609-37943628 | Msa0207260:CDS | 40.0% | |
| ! | ATGTTGGTCTGGTCAAGATT+TGG | - | chr2_1:37944285-37944304 | Msa0207260:intron | 40.0% |
| CGATTGAAAACACCTGAGTT+CGG | - | chr2_1:37944459-37944478 | Msa0207260:intron | 40.0% | |
| CGGACATTCATGTGACTTAT+AGG | + | chr2_1:37944603-37944622 | None:intergenic | 40.0% | |
| !! | CAATCACTTTTCTGCTGTTG+TGG | + | chr2_1:37944634-37944653 | None:intergenic | 40.0% |
| TGAAGAATGCTCCATGTCTA+TGG | - | chr2_1:37944658-37944677 | Msa0207260:intron | 40.0% | |
| TCGGTTTCTTCTTCTTGCTA+GGG | + | chr2_1:37944754-37944773 | None:intergenic | 40.0% | |
| !! | TAATAGGTTTCTGGCTGCTT+TGG | - | chr2_1:37944943-37944962 | Msa0207260:intron | 40.0% |
| GCCTTAACAGAAGGATTACT+AGG | + | chr2_1:37945028-37945047 | None:intergenic | 40.0% | |
| AGCCATCACATGTAAAAGGA+AGG | + | chr2_1:37943532-37943551 | None:intergenic | 40.0% | |
| TTGCAGCCATCACATGTAAA+AGG | + | chr2_1:37943536-37943555 | None:intergenic | 40.0% | |
| TGTCGGAACGATTCTTGATT+AGG | - | chr2_1:37943609-37943628 | Msa0207260:CDS | 40.0% | |
| ! | ATGTTGGTCTGGTCAAGATT+TGG | - | chr2_1:37944285-37944304 | Msa0207260:intron | 40.0% |
| CGATTGAAAACACCTGAGTT+CGG | - | chr2_1:37944459-37944478 | Msa0207260:intron | 40.0% | |
| CGGACATTCATGTGACTTAT+AGG | + | chr2_1:37944603-37944622 | None:intergenic | 40.0% | |
| !! | CAATCACTTTTCTGCTGTTG+TGG | + | chr2_1:37944634-37944653 | None:intergenic | 40.0% |
| TGAAGAATGCTCCATGTCTA+TGG | - | chr2_1:37944658-37944677 | Msa0207260:intron | 40.0% | |
| TCGGTTTCTTCTTCTTGCTA+GGG | + | chr2_1:37944754-37944773 | None:intergenic | 40.0% | |
| !! | TAATAGGTTTCTGGCTGCTT+TGG | - | chr2_1:37944943-37944962 | Msa0207260:intron | 40.0% |
| GCCTTAACAGAAGGATTACT+AGG | + | chr2_1:37945028-37945047 | None:intergenic | 40.0% | |
| ATTGAAACCATGGCATCTGG+TGG | - | chr2_1:37943443-37943462 | Msa0207260:exon | 45.0% | |
| TACATGTGATGGCTGCAAAC+AGG | - | chr2_1:37943538-37943557 | Msa0207260:CDS | 45.0% | |
| ACCTCTCATCTTGCAAACTG+AGG | - | chr2_1:37943668-37943687 | Msa0207260:CDS | 45.0% | |
| CCTCTCATCTTGCAAACTGA+GGG | - | chr2_1:37943669-37943688 | Msa0207260:CDS | 45.0% | |
| CGACCAAAAACACCTGAGTT+CGG | - | chr2_1:37943949-37943968 | Msa0207260:intron | 45.0% | |
| ! | AGACCGAACTCAGGTGTTTT+TGG | + | chr2_1:37943955-37943974 | None:intergenic | 45.0% |
| GAAATAGAGAGACCGAACTC+AGG | + | chr2_1:37943964-37943983 | None:intergenic | 45.0% | |
| !! | TTGGGTTGATCTGATGGTGT+TGG | - | chr2_1:37944056-37944075 | Msa0207260:intron | 45.0% |
| !! | TGATCTGATGGTGTTGGCTT+CGG | - | chr2_1:37944062-37944081 | Msa0207260:intron | 45.0% |
| ! | ACTTTTCTGCTGTTGTGGTC+TGG | + | chr2_1:37944629-37944648 | None:intergenic | 45.0% |
| TCCATGTCTATGGAGATCAC+AGG | - | chr2_1:37944668-37944687 | Msa0207260:intron | 45.0% | |
| TATGGAGATCACAGGCAACA+TGG | - | chr2_1:37944676-37944695 | Msa0207260:intron | 45.0% | |
| ATGGAGATCACAGGCAACAT+GGG | - | chr2_1:37944677-37944696 | Msa0207260:intron | 45.0% | |
| CAACATGGGAGAAAACGAAG+AGG | - | chr2_1:37944691-37944710 | Msa0207260:intron | 45.0% | |
| ! | GTCGGTTTCTTCTTCTTGCT+AGG | + | chr2_1:37944755-37944774 | None:intergenic | 45.0% |
| AATCTCCTTGCAACGCTTCA+CGG | + | chr2_1:37944783-37944802 | None:intergenic | 45.0% | |
| AAGCATGATCAGCAGCAAAC+CGG | + | chr2_1:37944865-37944884 | None:intergenic | 45.0% | |
| GCTGATCATGCTTGTAGTAG+AGG | - | chr2_1:37944872-37944891 | Msa0207260:intron | 45.0% | |
| TGCAACAGCAGTTGTTGATG+AGG | + | chr2_1:37944909-37944928 | None:intergenic | 45.0% | |
| CAACTGCTGTTGCAAATGCA+AGG | - | chr2_1:37944915-37944934 | Msa0207260:intron | 45.0% | |
| ! | GCTGCTTTGGCTTCAAGAAA+TGG | - | chr2_1:37944956-37944975 | Msa0207260:CDS | 45.0% |
| AGGATTACTAGGAGGAGAAG+TGG | + | chr2_1:37945017-37945036 | None:intergenic | 45.0% | |
| ATTGAAACCATGGCATCTGG+TGG | - | chr2_1:37943443-37943462 | Msa0207260:exon | 45.0% | |
| TACATGTGATGGCTGCAAAC+AGG | - | chr2_1:37943538-37943557 | Msa0207260:CDS | 45.0% | |
| ACCTCTCATCTTGCAAACTG+AGG | - | chr2_1:37943668-37943687 | Msa0207260:CDS | 45.0% | |
| CCTCTCATCTTGCAAACTGA+GGG | - | chr2_1:37943669-37943688 | Msa0207260:CDS | 45.0% | |
| CGACCAAAAACACCTGAGTT+CGG | - | chr2_1:37943949-37943968 | Msa0207260:intron | 45.0% | |
| ! | AGACCGAACTCAGGTGTTTT+TGG | + | chr2_1:37943955-37943974 | None:intergenic | 45.0% |
| GAAATAGAGAGACCGAACTC+AGG | + | chr2_1:37943964-37943983 | None:intergenic | 45.0% | |
| !! | TTGGGTTGATCTGATGGTGT+TGG | - | chr2_1:37944056-37944075 | Msa0207260:intron | 45.0% |
| !! | TGATCTGATGGTGTTGGCTT+CGG | - | chr2_1:37944062-37944081 | Msa0207260:intron | 45.0% |
| ! | ACTTTTCTGCTGTTGTGGTC+TGG | + | chr2_1:37944629-37944648 | None:intergenic | 45.0% |
| TCCATGTCTATGGAGATCAC+AGG | - | chr2_1:37944668-37944687 | Msa0207260:intron | 45.0% | |
| TATGGAGATCACAGGCAACA+TGG | - | chr2_1:37944676-37944695 | Msa0207260:intron | 45.0% | |
| ATGGAGATCACAGGCAACAT+GGG | - | chr2_1:37944677-37944696 | Msa0207260:intron | 45.0% | |
| CAACATGGGAGAAAACGAAG+AGG | - | chr2_1:37944691-37944710 | Msa0207260:intron | 45.0% | |
| ! | GTCGGTTTCTTCTTCTTGCT+AGG | + | chr2_1:37944755-37944774 | None:intergenic | 45.0% |
| AATCTCCTTGCAACGCTTCA+CGG | + | chr2_1:37944783-37944802 | None:intergenic | 45.0% | |
| AAGCATGATCAGCAGCAAAC+CGG | + | chr2_1:37944865-37944884 | None:intergenic | 45.0% | |
| GCTGATCATGCTTGTAGTAG+AGG | - | chr2_1:37944872-37944891 | Msa0207260:intron | 45.0% | |
| TGCAACAGCAGTTGTTGATG+AGG | + | chr2_1:37944909-37944928 | None:intergenic | 45.0% | |
| CAACTGCTGTTGCAAATGCA+AGG | - | chr2_1:37944915-37944934 | Msa0207260:intron | 45.0% | |
| ! | GCTGCTTTGGCTTCAAGAAA+TGG | - | chr2_1:37944956-37944975 | Msa0207260:CDS | 45.0% |
| AGGATTACTAGGAGGAGAAG+TGG | + | chr2_1:37945017-37945036 | None:intergenic | 45.0% | |
| !!! | ATATATATTTTTCATTTTAA+TGG | + | chr2_1:37944359-37944378 | None:intergenic | 5.0% |
| !!! | ATATATATTTTTCATTTTAA+TGG | + | chr2_1:37944359-37944378 | None:intergenic | 5.0% |
| TTCTGTTCCACCAGATGCCA+TGG | + | chr2_1:37943453-37943472 | None:intergenic | 50.0% | |
| GCTGGTGACAATCAACATGC+TGG | + | chr2_1:37943502-37943521 | None:intergenic | 50.0% | |
| CCCTCAGTTTGCAAGATGAG+AGG | + | chr2_1:37943672-37943691 | None:intergenic | 50.0% | |
| !! | ACCTGCTTGGGTTGATCTGA+TGG | - | chr2_1:37944050-37944069 | Msa0207260:intron | 50.0% |
| ACCATCAGATCAACCCAAGC+AGG | + | chr2_1:37944054-37944073 | None:intergenic | 50.0% | |
| TTGAGTCAAAGGCCGAACTC+AGG | + | chr2_1:37944474-37944493 | None:intergenic | 50.0% | |
| ! | CTGCTGTTGTGGTCTGGTTT+CGG | + | chr2_1:37944623-37944642 | None:intergenic | 50.0% |
| GCCTGTGATCTCCATAGACA+TGG | + | chr2_1:37944672-37944691 | None:intergenic | 50.0% | |
| ATCTCCTTGCAACGCTTCAC+GGG | + | chr2_1:37944782-37944801 | None:intergenic | 50.0% | |
| GCTTGAGGCACACCTTAATG+TGG | + | chr2_1:37944841-37944860 | None:intergenic | 50.0% | |
| TTAAGGTGTGCCTCAAGCAC+CGG | - | chr2_1:37944843-37944862 | Msa0207260:intron | 50.0% | |
| TTCTGTTCCACCAGATGCCA+TGG | + | chr2_1:37943453-37943472 | None:intergenic | 50.0% | |
| GCTGGTGACAATCAACATGC+TGG | + | chr2_1:37943502-37943521 | None:intergenic | 50.0% | |
| CCCTCAGTTTGCAAGATGAG+AGG | + | chr2_1:37943672-37943691 | None:intergenic | 50.0% | |
| !! | ACCTGCTTGGGTTGATCTGA+TGG | - | chr2_1:37944050-37944069 | Msa0207260:intron | 50.0% |
| ACCATCAGATCAACCCAAGC+AGG | + | chr2_1:37944054-37944073 | None:intergenic | 50.0% | |
| TTGAGTCAAAGGCCGAACTC+AGG | + | chr2_1:37944474-37944493 | None:intergenic | 50.0% | |
| ! | CTGCTGTTGTGGTCTGGTTT+CGG | + | chr2_1:37944623-37944642 | None:intergenic | 50.0% |
| GCCTGTGATCTCCATAGACA+TGG | + | chr2_1:37944672-37944691 | None:intergenic | 50.0% | |
| ATCTCCTTGCAACGCTTCAC+GGG | + | chr2_1:37944782-37944801 | None:intergenic | 50.0% | |
| GCTTGAGGCACACCTTAATG+TGG | + | chr2_1:37944841-37944860 | None:intergenic | 50.0% | |
| TTAAGGTGTGCCTCAAGCAC+CGG | - | chr2_1:37944843-37944862 | Msa0207260:intron | 50.0% | |
| TGCACGCGTGCGAAAAGTAG+AGG | - | chr2_1:37944199-37944218 | Msa0207260:intron | 55.0% | |
| TCTCCTTGCAACGCTTCACG+GGG | + | chr2_1:37944781-37944800 | None:intergenic | 55.0% | |
| TGCACGCGTGCGAAAAGTAG+AGG | - | chr2_1:37944199-37944218 | Msa0207260:intron | 55.0% | |
| TCTCCTTGCAACGCTTCACG+GGG | + | chr2_1:37944781-37944800 | None:intergenic | 55.0% | |
| CAACGCTTCACGGGGCAAGT+CGG | + | chr2_1:37944773-37944792 | None:intergenic | 60.0% | |
| !! | TTGCCCCGTGAAGCGTTGCA+AGG | - | chr2_1:37944775-37944794 | Msa0207260:intron | 60.0% |
| CAGCAGCAAACCGGTGCTTG+AGG | + | chr2_1:37944856-37944875 | None:intergenic | 60.0% | |
| CAACGCTTCACGGGGCAAGT+CGG | + | chr2_1:37944773-37944792 | None:intergenic | 60.0% | |
| !! | TTGCCCCGTGAAGCGTTGCA+AGG | - | chr2_1:37944775-37944794 | Msa0207260:intron | 60.0% |
| CAGCAGCAAACCGGTGCTTG+AGG | + | chr2_1:37944856-37944875 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 37943383 | 37945130 | 37943383 | ID=Msa0207260;Name=Msa0207260 |
| chr2_1 | mRNA | 37943383 | 37945130 | 37943383 | ID=Msa0207260-mRNA-1;Parent=Msa0207260;Name=Msa0207260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69|1|1|1|1|1|2|76|194 |
| chr2_1 | exon | 37943383 | 37943935 | 37943383 | ID=Msa0207260-mRNA-1:exon:12215;Parent=Msa0207260-mRNA-1 |
| chr2_1 | exon | 37944954 | 37945130 | 37944954 | ID=Msa0207260-mRNA-1:exon:12214;Parent=Msa0207260-mRNA-1 |
| chr2_1 | five_prime_UTR | 37945062 | 37945130 | 37945062 | ID=Msa0207260-mRNA-1:five_prime_utr;Parent=Msa0207260-mRNA-1 |
| chr2_1 | CDS | 37944954 | 37945061 | 37944954 | ID=Msa0207260-mRNA-1:cds;Parent=Msa0207260-mRNA-1 |
| chr2_1 | CDS | 37943459 | 37943935 | 37943459 | ID=Msa0207260-mRNA-1:cds;Parent=Msa0207260-mRNA-1 |
| chr2_1 | three_prime_UTR | 37943383 | 37943458 | 37943383 | ID=Msa0207260-mRNA-1:three_prime_utr;Parent=Msa0207260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
