Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126440 | XP_013450194.1 | 72.093 | 129 | 28 | 2 | 1 | 122 | 92 | 219 | 8.10e-51 | 179 |
| Msa1126440 | XP_013450194.1 | 93.913 | 230 | 11 | 1 | 128 | 357 | 1 | 227 | 2.29e-155 | 445 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126440 | sp|Q9SJ52|NHL10_ARATH | 43.478 | 230 | 119 | 6 | 132 | 356 | 4 | 227 | 5.44e-59 | 193 |
| Msa1126440 | sp|Q9SJ52|NHL10_ARATH | 38.983 | 118 | 60 | 3 | 1 | 110 | 93 | 206 | 6.35e-20 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126440 | A0A072U3C0 | 72.093 | 129 | 28 | 2 | 1 | 122 | 92 | 219 | 3.87e-51 | 179 |
| Msa1126440 | A0A072U3C0 | 93.913 | 230 | 11 | 1 | 128 | 357 | 1 | 227 | 1.09e-155 | 445 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035790 | Msa1126440 | 0.830376 | 3.040449e-55 | -8.615850e-47 |
| Msa0051480 | Msa1126440 | 0.829957 | 3.848705e-55 | -8.615850e-47 |
| Msa0051730 | Msa1126440 | 0.800415 | 1.456758e-48 | -8.615850e-47 |
| Msa0076640 | Msa1126440 | 0.806853 | 6.723740e-50 | -8.615850e-47 |
| Msa0083890 | Msa1126440 | 0.818095 | 2.343396e-52 | -8.615850e-47 |
| Msa0146200 | Msa1126440 | 0.838206 | 3.299464e-57 | -8.615850e-47 |
| Msa0147790 | Msa1126440 | 0.801069 | 1.071339e-48 | -8.615850e-47 |
| Msa0162680 | Msa1126440 | 0.816403 | 5.631617e-52 | -8.615850e-47 |
| Msa0207260 | Msa1126440 | 0.814777 | 1.296275e-51 | -8.615850e-47 |
| Msa0224210 | Msa1126440 | 0.805274 | 1.445084e-49 | -8.615850e-47 |
| Msa0225200 | Msa1126440 | 0.810548 | 1.091174e-50 | -8.615850e-47 |
| Msa0385320 | Msa1126440 | 0.819961 | 8.823136e-53 | -8.615850e-47 |
| Msa0390790 | Msa1126440 | 0.804741 | 1.868000e-49 | -8.615850e-47 |
| Msa0416830 | Msa1126440 | 0.803820 | 2.905097e-49 | -8.615850e-47 |
| Msa0438070 | Msa1126440 | 0.828963 | 6.710725e-55 | -8.615850e-47 |
| Msa0468450 | Msa1126440 | 0.810101 | 1.362647e-50 | -8.615850e-47 |
| Msa0481740 | Msa1126440 | 0.999094 | 6.367718e-290 | -8.615850e-47 |
| Msa0481770 | Msa1126440 | 0.928586 | 2.340701e-92 | -8.615850e-47 |
| Msa0982110 | Msa1126440 | 0.820893 | 5.392748e-53 | -8.615850e-47 |
| Msa1025750 | Msa1126440 | 0.801996 | 6.917228e-49 | -8.615850e-47 |
| Msa1080650 | Msa1126440 | 0.995657 | 1.640685e-218 | -8.615850e-47 |
| Msa0253120 | Msa1126440 | 0.867634 | 1.184304e-65 | -8.615850e-47 |
| Msa0262360 | Msa1126440 | 0.822688 | 2.072043e-53 | -8.615850e-47 |
| Msa0291900 | Msa1126440 | 0.863654 | 2.133297e-64 | -8.615850e-47 |
| Msa0291920 | Msa1126440 | 0.851581 | 8.082932e-61 | -8.615850e-47 |
| Msa0300140 | Msa1126440 | 0.818269 | 2.140624e-52 | -8.615850e-47 |
| Msa0329880 | Msa1126440 | 0.853671 | 2.048447e-61 | -8.615850e-47 |
| Msa0332360 | Msa1126440 | 0.814918 | 1.206103e-51 | -8.615850e-47 |
| Msa1126440 | Msa1183750 | 0.823182 | 1.589300e-53 | -8.615850e-47 |
| Msa1126440 | Msa1215000 | 0.827991 | 1.152177e-54 | -8.615850e-47 |
| Msa1126440 | Msa1300930 | 0.823801 | 1.139165e-53 | -8.615850e-47 |
| Msa1126440 | Msa1309050 | 0.824167 | 9.345627e-54 | -8.615850e-47 |
| Msa1126440 | Msa1331950 | 0.869045 | 4.152971e-66 | -8.615850e-47 |
| Msa1126440 | Msa1338580 | 0.853952 | 1.700292e-61 | -8.615850e-47 |
| Msa1126440 | Msa1344220 | 0.822125 | 2.800814e-53 | -8.615850e-47 |
| Msa1126440 | Msa1344330 | 0.819772 | 9.743674e-53 | -8.615850e-47 |
| Msa1126440 | Msa1349830 | 0.827717 | 1.340984e-54 | -8.615850e-47 |
| Msa1126440 | Msa1361710 | 0.814121 | 1.810645e-51 | -8.615850e-47 |
| Msa1126440 | Msa1377050 | 0.830219 | 3.322005e-55 | -8.615850e-47 |
| Msa1126440 | Msa1383790 | 0.804934 | 1.701930e-49 | -8.615850e-47 |
| Msa1126440 | Msa1396160 | 0.828696 | 7.787207e-55 | -8.615850e-47 |
| Msa1126440 | Msa1401110 | 0.811526 | 6.698720e-51 | -8.615850e-47 |
| Msa1126440 | Msa1427000 | 0.808882 | 2.489147e-50 | -8.615850e-47 |
| Msa1126440 | Msa1432180 | 0.867884 | 9.843942e-66 | -8.615850e-47 |
| Msa1126440 | Msa1453600 | 0.916548 | 1.559538e-85 | -8.615850e-47 |
| Msa0523080 | Msa1126440 | 0.808103 | 3.650820e-50 | -8.615850e-47 |
| Msa0568110 | Msa1126440 | 0.802735 | 4.872120e-49 | -8.615850e-47 |
| Msa0570460 | Msa1126440 | 0.836117 | 1.129155e-56 | -8.615850e-47 |
| Msa0870120 | Msa1126440 | 0.819987 | 8.702189e-53 | -8.615850e-47 |
| Msa0935830 | Msa1126440 | 0.831935 | 1.258818e-55 | -8.615850e-47 |
| Msa0973000 | Msa1126440 | 0.837580 | 4.781133e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126440 | MtrunA17_Chr7g0267281 | 93.913 | 230 | 11 | 1 | 128 | 357 | 1 | 227 | 2.11e-159 | 445 |
| Msa1126440 | MtrunA17_Chr7g0267281 | 72.093 | 129 | 28 | 2 | 1 | 122 | 92 | 219 | 7.45e-55 | 179 |
| Msa1126440 | MtrunA17_Chr7g0267231 | 78.261 | 230 | 47 | 1 | 128 | 357 | 1 | 227 | 1.24e-119 | 345 |
| Msa1126440 | MtrunA17_Chr7g0267231 | 69.925 | 133 | 29 | 2 | 1 | 126 | 92 | 220 | 1.04e-55 | 181 |
| Msa1126440 | MtrunA17_Chr7g0267291 | 72.936 | 218 | 56 | 2 | 133 | 349 | 2 | 217 | 1.89e-112 | 330 |
| Msa1126440 | MtrunA17_Chr7g0267291 | 89.474 | 133 | 7 | 1 | 1 | 126 | 89 | 221 | 5.78e-78 | 241 |
| Msa1126440 | MtrunA17_Chr7g0267301 | 70.996 | 231 | 60 | 5 | 131 | 356 | 3 | 231 | 1.41e-106 | 311 |
| Msa1126440 | MtrunA17_Chr7g0267301 | 77.273 | 132 | 23 | 1 | 1 | 125 | 93 | 224 | 1.54e-64 | 204 |
| Msa1126440 | MtrunA17_Chr1g0177521 | 47.418 | 213 | 107 | 2 | 146 | 356 | 8 | 217 | 7.64e-50 | 166 |
| Msa1126440 | MtrunA17_Chr1g0177521 | 48.760 | 121 | 55 | 1 | 2 | 115 | 81 | 201 | 5.09e-29 | 111 |
| Msa1126440 | MtrunA17_Chr4g0067041 | 37.398 | 246 | 128 | 7 | 128 | 355 | 1 | 238 | 1.26e-47 | 161 |
| Msa1126440 | MtrunA17_Chr4g0067041 | 35.484 | 124 | 69 | 2 | 1 | 117 | 105 | 224 | 1.50e-18 | 84.0 |
| Msa1126440 | MtrunA17_Chr7g0267181 | 43.043 | 230 | 122 | 5 | 131 | 355 | 2 | 227 | 6.22e-46 | 156 |
| Msa1126440 | MtrunA17_Chr7g0267181 | 42.478 | 113 | 54 | 3 | 5 | 110 | 99 | 207 | 1.13e-20 | 89.4 |
| Msa1126440 | MtrunA17_Chr1g0177471 | 40.562 | 249 | 121 | 6 | 128 | 356 | 1 | 242 | 9.70e-44 | 151 |
| Msa1126440 | MtrunA17_Chr1g0177471 | 39.837 | 123 | 63 | 2 | 1 | 116 | 108 | 226 | 2.08e-21 | 92.0 |
| Msa1126440 | MtrunA17_Chr1g0177531 | 49.194 | 124 | 59 | 3 | 159 | 282 | 11 | 130 | 1.65e-25 | 99.8 |
| Msa1126440 | MtrunA17_Chr6g0478671 | 32.258 | 186 | 108 | 7 | 155 | 335 | 5 | 177 | 6.71e-22 | 92.4 |
| Msa1126440 | MtrunA17_Chr6g0479071 | 30.769 | 182 | 113 | 8 | 163 | 335 | 2 | 179 | 8.19e-18 | 81.3 |
| Msa1126440 | MtrunA17_Chr6g0478661 | 32.432 | 185 | 103 | 8 | 158 | 335 | 5 | 174 | 9.63e-18 | 80.9 |
| Msa1126440 | MtrunA17_Chr6g0479081 | 31.319 | 182 | 112 | 8 | 163 | 335 | 2 | 179 | 7.07e-17 | 78.6 |
| Msa1126440 | MtrunA17_Chr2g0280851 | 29.775 | 178 | 112 | 6 | 181 | 356 | 36 | 202 | 7.62e-15 | 72.4 |
| Msa1126440 | MtrunA17_Chr5g0440571 | 26.047 | 215 | 142 | 6 | 145 | 348 | 41 | 249 | 4.07e-14 | 71.6 |
| Msa1126440 | MtrunA17_Chr1g0206161 | 22.845 | 232 | 143 | 7 | 143 | 356 | 17 | 230 | 3.62e-13 | 68.2 |
| Msa1126440 | MtrunA17_Chr7g0267371 | 29.493 | 217 | 125 | 10 | 148 | 354 | 4 | 202 | 1.01e-12 | 66.6 |
| Msa1126440 | MtrunA17_Chr7g0267361 | 29.442 | 197 | 117 | 5 | 159 | 347 | 67 | 249 | 7.06e-12 | 65.1 |
| Msa1126440 | MtrunA17_Chr5g0433201 | 33.735 | 166 | 95 | 6 | 123 | 279 | 29 | 188 | 3.76e-11 | 62.8 |
| Msa1126440 | MtrunA17_Chr7g0267321 | 23.308 | 266 | 178 | 7 | 85 | 329 | 69 | 329 | 9.59e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126440 | AT2G35980.1 | 43.478 | 230 | 119 | 6 | 132 | 356 | 4 | 227 | 5.53e-60 | 193 |
| Msa1126440 | AT2G35980.1 | 38.983 | 118 | 60 | 3 | 1 | 110 | 93 | 206 | 6.45e-21 | 90.5 |
| Msa1126440 | AT3G11650.1 | 37.398 | 246 | 125 | 6 | 131 | 356 | 3 | 239 | 1.02e-50 | 169 |
| Msa1126440 | AT3G11650.1 | 36.885 | 122 | 65 | 3 | 3 | 116 | 108 | 225 | 3.92e-17 | 80.1 |
| Msa1126440 | AT5G06320.1 | 38.589 | 241 | 126 | 5 | 128 | 356 | 1 | 231 | 4.79e-49 | 165 |
| Msa1126440 | AT5G06320.1 | 37.600 | 125 | 68 | 2 | 3 | 120 | 101 | 222 | 1.15e-22 | 95.5 |
| Msa1126440 | AT2G35460.1 | 36.820 | 239 | 128 | 6 | 136 | 356 | 5 | 238 | 1.12e-45 | 156 |
| Msa1126440 | AT2G35460.1 | 38.525 | 122 | 64 | 2 | 3 | 117 | 108 | 225 | 6.38e-21 | 90.9 |
| Msa1126440 | AT1G32270.2 | 33.548 | 155 | 98 | 2 | 190 | 343 | 1 | 151 | 9.72e-19 | 86.7 |
| Msa1126440 | AT1G32270.1 | 33.333 | 156 | 99 | 2 | 190 | 344 | 1 | 152 | 2.65e-18 | 85.9 |
| Msa1126440 | AT3G11660.1 | 27.551 | 196 | 127 | 6 | 168 | 354 | 18 | 207 | 2.10e-15 | 74.7 |
| Msa1126440 | AT4G05220.1 | 23.590 | 195 | 137 | 4 | 147 | 333 | 16 | 206 | 2.30e-15 | 75.1 |
| Msa1126440 | AT5G53730.1 | 24.309 | 181 | 128 | 4 | 181 | 356 | 37 | 213 | 9.02e-12 | 64.3 |
Find 66 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCTTAGGTTTGAGCTTTC+CGG | 0.214081 | 7_3:-77974893 | None:intergenic |
| TAGAACTCAAAGGAACTTTA+AGG | 0.223136 | 7_3:-77977401 | None:intergenic |
| GCTGTCTCTTCAGTTTCTTC+TGG | 0.267585 | 7_3:+77976899 | Msa1126440:CDS |
| AGGTTTGAGCTTTCCGGATA+TGG | 0.277292 | 7_3:-77974887 | None:intergenic |
| TGAGGCTTTACTTCAGGATT+AGG | 0.300660 | 7_3:+77977325 | Msa1126440:CDS |
| TGTGCTGGTGGTGGAATGGC+GGG | 0.331387 | 7_3:-77976838 | None:intergenic |
| TCTATGTGAGGCTTTACTTC+AGG | 0.355824 | 7_3:+77977319 | Msa1126440:CDS |
| TTTCTCAGGACAACATGTTT+TGG | 0.356714 | 7_3:+77977236 | Msa1126440:CDS |
| AGACTCGGGGATTTGATATC+TGG | 0.358540 | 7_3:+77977351 | Msa1126440:CDS |
| GGTTGCTGCTCTTCTTGTAT+TGG | 0.359850 | 7_3:-77977200 | None:intergenic |
| ATCGCACTCATAGTTCTTGC+TGG | 0.377894 | 7_3:+77976931 | Msa1126440:CDS |
| GCGAGGTCGCATTTGACCTT+AGG | 0.395951 | 7_3:-77974907 | None:intergenic |
| TTGCGAGGGCGAGGTTGTGC+TGG | 0.439367 | 7_3:-77976853 | None:intergenic |
| TTCTGCTTCGGTGGTTGCGA+GGG | 0.450941 | 7_3:-77976867 | None:intergenic |
| TCCTGAGAAAACAGCACTCA+TGG | 0.453273 | 7_3:-77977223 | None:intergenic |
| GGGCGAGGTTGTGCTGGTGG+TGG | 0.461649 | 7_3:-77976847 | None:intergenic |
| GAGTGCTATTCTTCTTGTCT+TGG | 0.462562 | 7_3:-77974723 | None:intergenic |
| AGGTTGTGCTGGTGGTGGAA+TGG | 0.471755 | 7_3:-77976842 | None:intergenic |
| CTTCTGCTTCGGTGGTTGCG+AGG | 0.479014 | 7_3:-77976868 | None:intergenic |
| AGCAACAACAACTTCTGCTT+CGG | 0.479078 | 7_3:-77976879 | None:intergenic |
| TTTAGGATTAGGTTCAAACT+TGG | 0.485508 | 7_3:+77974859 | Msa1126440:CDS |
| CTTCGGTGGTTGCGAGGGCG+AGG | 0.496928 | 7_3:-77976862 | None:intergenic |
| TAGTACGCACCGTTCAATTG+TGG | 0.499335 | 7_3:-77976811 | None:intergenic |
| CAATTGAACGGTGCGTACTA+CGG | 0.499960 | 7_3:+77976814 | Msa1126440:CDS |
| AAACTTGGAGACTCCATATC+CGG | 0.505174 | 7_3:+77974874 | Msa1126440:CDS |
| TTGTGCTGGTGGTGGAATGG+CGG | 0.506260 | 7_3:-77976839 | None:intergenic |
| TTAAGGTCACATTTCACCTT+AGG | 0.511449 | 7_3:-77977384 | None:intergenic |
| AACAACAACTTCTGCTTCGG+TGG | 0.516162 | 7_3:-77976876 | None:intergenic |
| TCAGGATTAGGTTCAGACTC+GGG | 0.521074 | 7_3:+77977337 | Msa1126440:CDS |
| CAACATCTATTATGATAAAG+TGG | 0.524570 | 7_3:+77977107 | Msa1126440:CDS |
| GAAGCTCAAGCATTCTATGA+AGG | 0.529600 | 7_3:+77974652 | Msa1126440:CDS |
| TTCGTCGACATAGAACTTGA+AGG | 0.533993 | 7_3:-77976995 | None:intergenic |
| CGAGGGCGAGGTTGTGCTGG+TGG | 0.535016 | 7_3:-77976850 | None:intergenic |
| GACATAGAACTTGAAGGGGC+GGG | 0.537286 | 7_3:-77976989 | None:intergenic |
| GAATTCAAAGGATGTTGCAT+TGG | 0.540349 | 7_3:-77977430 | None:intergenic |
| CCTGAGAAAACAGCACTCAT+GGG | 0.540981 | 7_3:-77977222 | None:intergenic |
| CAACATCCTTTGAATTCACT+AGG | 0.547733 | 7_3:+77977436 | Msa1126440:CDS |
| TTCAGGATTAGGTTCAGACT+CGG | 0.548093 | 7_3:+77977336 | Msa1126440:CDS |
| ATCTGGTGATTACAAGCCTA+AGG | 0.550508 | 7_3:+77977368 | Msa1126440:CDS |
| TCGTCGACATAGAACTTGAA+GGG | 0.552525 | 7_3:-77976994 | None:intergenic |
| GAGCATTCTACGAAGGGTCG+AGG | 0.554221 | 7_3:+77977136 | Msa1126440:CDS |
| ATCCGGAAAGCTCAAACCTA+AGG | 0.555906 | 7_3:+77974891 | Msa1126440:CDS |
| GGTGGGTATAAGTCGAATGA+AGG | 0.561749 | 7_3:-77974965 | None:intergenic |
| GTACAACGAGATAGAAGATA+AGG | 0.563903 | 7_3:-77976963 | None:intergenic |
| AAGCATTCTATGAAGGGTCG+AGG | 0.566567 | 7_3:+77974659 | Msa1126440:CDS |
| ACATAGAACTTGAAGGGGCG+GGG | 0.572104 | 7_3:-77976988 | None:intergenic |
| AACTCAACATCGCACTTGGT+GGG | 0.572755 | 7_3:-77974982 | None:intergenic |
| CAGGATTAGGTTCAGACTCG+GGG | 0.604096 | 7_3:+77977338 | Msa1126440:CDS |
| AACAAGCAACCACAATTGAA+CGG | 0.610539 | 7_3:+77976802 | Msa1126440:CDS |
| CAATACACTAAACTACAACA+TGG | 0.612954 | 7_3:+77977047 | Msa1126440:CDS |
| AAGCTCAAGCATTCTATGAA+GGG | 0.614742 | 7_3:+77974653 | Msa1126440:CDS |
| CTTGGTCCTAGTGAATTCAA+AGG | 0.619486 | 7_3:-77977442 | None:intergenic |
| CGACATAGAACTTGAAGGGG+CGG | 0.619644 | 7_3:-77976990 | None:intergenic |
| GTGCTGGTGGTGGAATGGCG+GGG | 0.625212 | 7_3:-77976837 | None:intergenic |
| GTTGCATTACGAGTGCTCAA+AGG | 0.627594 | 7_3:-77974934 | None:intergenic |
| CTGAGAAAACAGCACTCATG+GGG | 0.650128 | 7_3:-77977221 | None:intergenic |
| CGTCGACATAGAACTTGAAG+GGG | 0.659465 | 7_3:-77976993 | None:intergenic |
| GTAGAAATCAACATCACACT+TGG | 0.661589 | 7_3:-77977460 | None:intergenic |
| GAGGCACGAGCATTCTACGA+AGG | 0.666387 | 7_3:+77977129 | Msa1126440:CDS |
| AGGCACGAGCATTCTACGAA+GGG | 0.671696 | 7_3:+77977130 | Msa1126440:CDS |
| AAGTTTATGATATCTATGTG+AGG | 0.684871 | 7_3:+77977307 | Msa1126440:CDS |
| CATCTATTATGATAAAGTGG+AGG | 0.687150 | 7_3:+77977110 | Msa1126440:CDS |
| AAGAATAGCACTCCTATGAG+CGG | 0.689932 | 7_3:+77974733 | Msa1126440:CDS |
| GTGTGTGATCACATCAACAT+TGG | 0.703529 | 7_3:-77977163 | None:intergenic |
| GATAGAAGATAAGGACTGCG+AGG | 0.714786 | 7_3:-77976954 | None:intergenic |
| GAGTGCTCAAAGGAACTGCG+AGG | 0.755136 | 7_3:-77974924 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAGTAATATAAATAA+AGG | - | chr7_3:77975330-77975349 | None:intergenic | 10.0% |
| !! | TTATAAATTTGTAAATAGAA+AGG | + | chr7_3:77975935-77975954 | Msa1126440:intron | 10.0% |
| !! | AATTCAATAGTTAAATTAGA+TGG | + | chr7_3:77975433-77975452 | Msa1126440:intron | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr7_3:77976194-77976213 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr7_3:77976193-77976212 | Msa1126440:intron | 15.0% |
| !! | TTAATCATATTTATAAAGCA+TGG | + | chr7_3:77976774-77976793 | Msa1126440:intron | 15.0% |
| !! | TTCAACAAAGATAAAAATGT+TGG | + | chr7_3:77974808-77974827 | Msa1126440:CDS | 20.0% |
| !! | TTGTATGTAATTCTGATAAT+TGG | + | chr7_3:77975072-77975091 | Msa1126440:intron | 20.0% |
| !!! | TCTAGTTGTTTTTGTTTTAA+TGG | + | chr7_3:77975168-77975187 | Msa1126440:intron | 20.0% |
| !!! | CTAGTTGTTTTTGTTTTAAT+GGG | + | chr7_3:77975169-77975188 | Msa1126440:intron | 20.0% |
| !! | ATACATTTATCAAACACAAT+TGG | - | chr7_3:77975366-77975385 | None:intergenic | 20.0% |
| !! | TTAAATTAGATGGTTAAAGT+AGG | + | chr7_3:77975443-77975462 | Msa1126440:intron | 20.0% |
| !!! | GATTTTTTTCCTTACAAATT+AGG | - | chr7_3:77975651-77975670 | None:intergenic | 20.0% |
| !!! | TTTTCATTGACTATTGATTA+TGG | + | chr7_3:77975762-77975781 | Msa1126440:intron | 20.0% |
| !!! | AAGGTTATTATTTATTTTGC+TGG | + | chr7_3:77975954-77975973 | Msa1126440:intron | 20.0% |
| !!! | AGGTTATTATTTATTTTGCT+GGG | + | chr7_3:77975955-77975974 | Msa1126440:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr7_3:77976107-77976126 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr7_3:77976184-77976203 | Msa1126440:intron | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr7_3:77976227-77976246 | None:intergenic | 20.0% |
| !! | ATTCAATTTCTACTTTGTTA+AGG | - | chr7_3:77976507-77976526 | None:intergenic | 20.0% |
| !! | TTTATAGCAAATATTCAACA+CGG | + | chr7_3:77976532-77976551 | Msa1126440:intron | 20.0% |
| !! | TGTATATATAGAAAGGAATA+GGG | - | chr7_3:77976598-77976617 | None:intergenic | 20.0% |
| !!! | TTTCTTGTTTTTGTATAGAG+TGG | + | chr7_3:77975230-77975249 | Msa1126440:intron | 25.0% |
| !!! | TTCTTGTTTTTGTATAGAGT+GGG | + | chr7_3:77975231-77975250 | Msa1126440:intron | 25.0% |
| !! | TTTTTCCTTACAAATTAGGA+CGG | - | chr7_3:77975647-77975666 | None:intergenic | 25.0% |
| !! | ACTATTGATTATGGAGAAAA+TGG | + | chr7_3:77975771-77975790 | Msa1126440:intron | 25.0% |
| !!! | TGTCTTTTTTGCTTACATTT+TGG | + | chr7_3:77975870-77975889 | Msa1126440:intron | 25.0% |
| !!! | GTCTTTTTTGCTTACATTTT+GGG | + | chr7_3:77975871-77975890 | Msa1126440:intron | 25.0% |
| ! | ATTTAATCTTGTCATCACAT+GGG | - | chr7_3:77975998-77976017 | None:intergenic | 25.0% |
| ! | ATGACAAGATTAAATGTCAA+AGG | + | chr7_3:77976003-77976022 | Msa1126440:intron | 25.0% |
| ! | TGTTAAGGAAGCTATATAAA+TGG | - | chr7_3:77976492-77976511 | None:intergenic | 25.0% |
| ! | GTATATATAGAAAGGAATAG+GGG | - | chr7_3:77976597-77976616 | None:intergenic | 25.0% |
| ! | GTGTATATATAGAAAGGAAT+AGG | - | chr7_3:77976599-77976618 | None:intergenic | 25.0% |
| ! | TGTATAAAATTGATGCCTTA+TGG | - | chr7_3:77976665-77976684 | None:intergenic | 25.0% |
| !!! | TAGATGTTGAGTTTTTTGTT+TGG | - | chr7_3:77977096-77977115 | None:intergenic | 25.0% |
| ! | CAACATCTATTATGATAAAG+TGG | + | chr7_3:77977107-77977126 | Msa1126440:CDS | 25.0% |
| ! | AAGTTTATGATATCTATGTG+AGG | + | chr7_3:77977307-77977326 | Msa1126440:CDS | 25.0% |
| !!! | TTGGTATTTTTAGAACTCAA+AGG | - | chr7_3:77977414-77977433 | None:intergenic | 25.0% |
| !!! | AGATACCGAGTTTTTTGTTA+GGG | - | chr7_3:77974618-77974637 | None:intergenic | 30.0% |
| !!! | TAGATACCGAGTTTTTTGTT+AGG | - | chr7_3:77974619-77974638 | None:intergenic | 30.0% |
| ! | TCTATGTGAAGCTCTATTTT+AGG | + | chr7_3:77974842-77974861 | Msa1126440:intron | 30.0% |
| !!! | TGAAGCTCTATTTTAGGATT+AGG | + | chr7_3:77974848-77974867 | Msa1126440:intron | 30.0% |
| ! | TTTAGGATTAGGTTCAAACT+TGG | + | chr7_3:77974859-77974878 | Msa1126440:CDS | 30.0% |
| TAATTAACATCGATGCTAGT+GGG | - | chr7_3:77975554-77975573 | None:intergenic | 30.0% | |
| TTAATTAACATCGATGCTAG+TGG | - | chr7_3:77975555-77975574 | None:intergenic | 30.0% | |
| CATTTAATCTTGTCATCACA+TGG | - | chr7_3:77975999-77976018 | None:intergenic | 30.0% | |
| TGTGCATAGTATTAATTGGA+GGG | - | chr7_3:77976141-77976160 | None:intergenic | 30.0% | |
| GTAGTGTGCATAGTATTAAT+TGG | - | chr7_3:77976145-77976164 | None:intergenic | 30.0% | |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr7_3:77976275-77976294 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr7_3:77976276-77976295 | Msa1126440:intron | 30.0% |
| !!! | AAATGGTTGATGATTTTGAC+CGG | - | chr7_3:77976475-77976494 | None:intergenic | 30.0% |
| !!! | ATAGGGGTTGGATTTTTTAT+GGG | - | chr7_3:77976581-77976600 | None:intergenic | 30.0% |
| !!! | AATAGGGGTTGGATTTTTTA+TGG | - | chr7_3:77976582-77976601 | None:intergenic | 30.0% |
| TGTGGTGTGTATATATAGAA+AGG | - | chr7_3:77976605-77976624 | None:intergenic | 30.0% | |
| AATGAGAGCAAGATATACTA+TGG | - | chr7_3:77976756-77976775 | None:intergenic | 30.0% | |
| CAATACACTAAACTACAACA+TGG | + | chr7_3:77977047-77977066 | Msa1126440:CDS | 30.0% | |
| CATCTATTATGATAAAGTGG+AGG | + | chr7_3:77977110-77977129 | Msa1126440:CDS | 30.0% | |
| TAGAACTCAAAGGAACTTTA+AGG | - | chr7_3:77977404-77977423 | None:intergenic | 30.0% | |
| !!! | GAGTTTTTTGTTAGGGTTGT+GGG | - | chr7_3:77974611-77974630 | None:intergenic | 35.0% |
| CACAACCCTAACAAAAAACT+CGG | + | chr7_3:77974610-77974629 | Msa1126440:CDS | 35.0% | |
| AAGCTCAAGCATTCTATGAA+GGG | + | chr7_3:77974653-77974672 | Msa1126440:CDS | 35.0% | |
| AACAACTAGAGTACATTGCA+TGG | - | chr7_3:77975158-77975177 | None:intergenic | 35.0% | |
| AATTAACATCGATGCTAGTG+GGG | - | chr7_3:77975553-77975572 | None:intergenic | 35.0% | |
| !!! | TTGCTTACATTTTGGGACAA+AGG | + | chr7_3:77975878-77975897 | Msa1126440:intron | 35.0% |
| !!! | TTTTGGGACAAAGGAATTGA+CGG | + | chr7_3:77975887-77975906 | Msa1126440:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr7_3:77976041-77976060 | None:intergenic | 35.0% |
| GTGTGCATAGTATTAATTGG+AGG | - | chr7_3:77976142-77976161 | None:intergenic | 35.0% | |
| AAAAATTGTACCCACTCAAG+AGG | + | chr7_3:77976347-77976366 | Msa1126440:intron | 35.0% | |
| AAAATTGTACCCACTCAAGA+GGG | + | chr7_3:77976348-77976367 | Msa1126440:intron | 35.0% | |
| AAACAAATTCCCTCTTGAGT+GGG | - | chr7_3:77976360-77976379 | None:intergenic | 35.0% | |
| !!! | GGATTTTTTATGGGATAACG+CGG | - | chr7_3:77976572-77976591 | None:intergenic | 35.0% |
| ATATAGAAAGGAATAGGGGT+TGG | - | chr7_3:77976593-77976612 | None:intergenic | 35.0% | |
| AACAAGCAACCACAATTGAA+CGG | + | chr7_3:77976802-77976821 | Msa1126440:CDS | 35.0% | |
| GTACAACGAGATAGAAGATA+AGG | - | chr7_3:77976966-77976985 | None:intergenic | 35.0% | |
| ! | TTTCTCAGGACAACATGTTT+TGG | + | chr7_3:77977236-77977255 | Msa1126440:CDS | 35.0% |
| TTAAGGTCACATTTCACCTT+AGG | - | chr7_3:77977387-77977406 | None:intergenic | 35.0% | |
| GAATTCAAAGGATGTTGCAT+TGG | - | chr7_3:77977433-77977452 | None:intergenic | 35.0% | |
| CAACATCCTTTGAATTCACT+AGG | + | chr7_3:77977436-77977455 | Msa1126440:CDS | 35.0% | |
| GTAGAAATCAACATCACACT+TGG | - | chr7_3:77977463-77977482 | None:intergenic | 35.0% | |
| !!! | CGAGTTTTTTGTTAGGGTTG+TGG | - | chr7_3:77974612-77974631 | None:intergenic | 40.0% |
| GAAGCTCAAGCATTCTATGA+AGG | + | chr7_3:77974652-77974671 | Msa1126440:CDS | 40.0% | |
| ! | GAGTGCTATTCTTCTTGTCT+TGG | - | chr7_3:77974726-77974745 | None:intergenic | 40.0% |
| AAGAATAGCACTCCTATGAG+CGG | + | chr7_3:77974733-77974752 | Msa1126440:CDS | 40.0% | |
| AAACTTGGAGACTCCATATC+CGG | + | chr7_3:77974874-77974893 | Msa1126440:CDS | 40.0% | |
| TTAGAACTCAACATCGCACT+TGG | - | chr7_3:77974989-77975008 | None:intergenic | 40.0% | |
| ACTAGAGTACATTGCATGGA+TGG | - | chr7_3:77975154-77975173 | None:intergenic | 40.0% | |
| !!! | TCTTTTAGGGTCTCTCTAGT+TGG | - | chr7_3:77975515-77975534 | None:intergenic | 40.0% |
| ACTAGAGAGACCCTAAAAGA+AGG | + | chr7_3:77975515-77975534 | Msa1126440:intron | 40.0% | |
| ! | GGGTGACAATCCTTCTTTTA+GGG | - | chr7_3:77975528-77975547 | None:intergenic | 40.0% |
| ! | TCCATCCGTCCTAATTTGTA+AGG | + | chr7_3:77975639-77975658 | Msa1126440:intron | 40.0% |
| TCCTTACAAATTAGGACGGA+TGG | - | chr7_3:77975643-77975662 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr7_3:77976280-77976299 | None:intergenic | 40.0% |
| CGGAGCGAGTATAAGTATAA+CGG | + | chr7_3:77976296-77976315 | Msa1126440:intron | 40.0% | |
| AGCGAGTATAAGTATAACGG+CGG | + | chr7_3:77976299-77976318 | Msa1126440:intron | 40.0% | |
| GAAACAAATTCCCTCTTGAG+TGG | - | chr7_3:77976361-77976380 | None:intergenic | 40.0% | |
| TGTTCAATCACCTTCGTAGT+TGG | + | chr7_3:77976396-77976415 | Msa1126440:intron | 40.0% | |
| AATCACCTTCGTAGTTGGTT+CGG | + | chr7_3:77976401-77976420 | Msa1126440:intron | 40.0% | |
| GCAAAGTTTGATGGAGATTG+TGG | - | chr7_3:77976451-77976470 | None:intergenic | 40.0% | |
| ATCTCCATCAAACTTTGCAC+CGG | + | chr7_3:77976453-77976472 | Msa1126440:intron | 40.0% | |
| GTGAGATAAGAAGCAAAGTG+TGG | - | chr7_3:77976623-77976642 | None:intergenic | 40.0% | |
| GTTGAAGAAAAGTTGTGCTG+TGG | - | chr7_3:77976690-77976709 | None:intergenic | 40.0% | |
| AGCAACAACAACTTCTGCTT+CGG | - | chr7_3:77976882-77976901 | None:intergenic | 40.0% | |
| TCGTCGACATAGAACTTGAA+GGG | - | chr7_3:77976997-77977016 | None:intergenic | 40.0% | |
| TTCGTCGACATAGAACTTGA+AGG | - | chr7_3:77976998-77977017 | None:intergenic | 40.0% | |
| GTGTGTGATCACATCAACAT+TGG | - | chr7_3:77977166-77977185 | None:intergenic | 40.0% | |
| TCTATGTGAGGCTTTACTTC+AGG | + | chr7_3:77977319-77977338 | Msa1126440:CDS | 40.0% | |
| TGAGGCTTTACTTCAGGATT+AGG | + | chr7_3:77977325-77977344 | Msa1126440:CDS | 40.0% | |
| TTCAGGATTAGGTTCAGACT+CGG | + | chr7_3:77977336-77977355 | Msa1126440:CDS | 40.0% | |
| ATCTGGTGATTACAAGCCTA+AGG | + | chr7_3:77977368-77977387 | Msa1126440:CDS | 40.0% | |
| CTTGGTCCTAGTGAATTCAA+AGG | - | chr7_3:77977445-77977464 | None:intergenic | 40.0% | |
| AAGCATTCTATGAAGGGTCG+AGG | + | chr7_3:77974659-77974678 | Msa1126440:CDS | 45.0% | |
| CCAGAAAAAACACCGCTCAT+AGG | - | chr7_3:77974748-77974767 | None:intergenic | 45.0% | |
| !!! | CCTATGAGCGGTGTTTTTTC+TGG | + | chr7_3:77974745-77974764 | Msa1126440:CDS | 45.0% |
| AGGTTTGAGCTTTCCGGATA+TGG | - | chr7_3:77974890-77974909 | None:intergenic | 45.0% | |
| ATCCGGAAAGCTCAAACCTA+AGG | + | chr7_3:77974891-77974910 | Msa1126440:CDS | 45.0% | |
| GACCTTAGGTTTGAGCTTTC+CGG | - | chr7_3:77974896-77974915 | None:intergenic | 45.0% | |
| GTTGCATTACGAGTGCTCAA+AGG | - | chr7_3:77974937-77974956 | None:intergenic | 45.0% | |
| GGTGGGTATAAGTCGAATGA+AGG | - | chr7_3:77974968-77974987 | None:intergenic | 45.0% | |
| AACTCAACATCGCACTTGGT+GGG | - | chr7_3:77974985-77975004 | None:intergenic | 45.0% | |
| ! | GGGGTGACAATCCTTCTTTT+AGG | - | chr7_3:77975529-77975548 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr7_3:77976279-77976298 | None:intergenic | 45.0% |
| TAACGGCGGCTATTATCAAG+TGG | + | chr7_3:77976313-77976332 | Msa1126440:intron | 45.0% | |
| TTGACCGGTGCAAAGTTTGA+TGG | - | chr7_3:77976460-77976479 | None:intergenic | 45.0% | |
| CACCATACGTTCTCTCCATA+AGG | + | chr7_3:77976647-77976666 | Msa1126440:intron | 45.0% | |
| TGCCTTATGGAGAGAACGTA+TGG | - | chr7_3:77976652-77976671 | None:intergenic | 45.0% | |
| TAGTACGCACCGTTCAATTG+TGG | - | chr7_3:77976814-77976833 | None:intergenic | 45.0% | |
| CAATTGAACGGTGCGTACTA+CGG | + | chr7_3:77976814-77976833 | Msa1126440:CDS | 45.0% | |
| AACAACAACTTCTGCTTCGG+TGG | - | chr7_3:77976879-77976898 | None:intergenic | 45.0% | |
| GCTGTCTCTTCAGTTTCTTC+TGG | + | chr7_3:77976899-77976918 | Msa1126440:CDS | 45.0% | |
| ATCGCACTCATAGTTCTTGC+TGG | + | chr7_3:77976931-77976950 | Msa1126440:CDS | 45.0% | |
| GATAGAAGATAAGGACTGCG+AGG | - | chr7_3:77976957-77976976 | None:intergenic | 45.0% | |
| CGTCGACATAGAACTTGAAG+GGG | - | chr7_3:77976996-77977015 | None:intergenic | 45.0% | |
| GGTTGCTGCTCTTCTTGTAT+TGG | - | chr7_3:77977203-77977222 | None:intergenic | 45.0% | |
| CTGAGAAAACAGCACTCATG+GGG | - | chr7_3:77977224-77977243 | None:intergenic | 45.0% | |
| CCTGAGAAAACAGCACTCAT+GGG | - | chr7_3:77977225-77977244 | None:intergenic | 45.0% | |
| TCCTGAGAAAACAGCACTCA+TGG | - | chr7_3:77977226-77977245 | None:intergenic | 45.0% | |
| TCAGGATTAGGTTCAGACTC+GGG | + | chr7_3:77977337-77977356 | Msa1126440:CDS | 45.0% | |
| AGACTCGGGGATTTGATATC+TGG | + | chr7_3:77977351-77977370 | Msa1126440:CDS | 45.0% | |
| GAACTCAACATCGCACTTGG+TGG | - | chr7_3:77974986-77975005 | None:intergenic | 50.0% | |
| TAACATCGATGCTAGTGGGG+CGG | - | chr7_3:77975550-77975569 | None:intergenic | 50.0% | |
| TGGGACAAAGGAATTGACGG+AGG | + | chr7_3:77975890-77975909 | Msa1126440:intron | 50.0% | |
| GGGACAAAGGAATTGACGGA+GGG | + | chr7_3:77975891-77975910 | Msa1126440:intron | 50.0% | |
| ACATAGAACTTGAAGGGGCG+GGG | - | chr7_3:77976991-77977010 | None:intergenic | 50.0% | |
| GACATAGAACTTGAAGGGGC+GGG | - | chr7_3:77976992-77977011 | None:intergenic | 50.0% | |
| CGACATAGAACTTGAAGGGG+CGG | - | chr7_3:77976993-77977012 | None:intergenic | 50.0% | |
| AGGCACGAGCATTCTACGAA+GGG | + | chr7_3:77977130-77977149 | Msa1126440:CDS | 50.0% | |
| !!! | CCCATGAGTGCTGTTTTCTC+AGG | + | chr7_3:77977222-77977241 | Msa1126440:CDS | 50.0% |
| CAGGATTAGGTTCAGACTCG+GGG | + | chr7_3:77977338-77977357 | Msa1126440:CDS | 50.0% | |
| GCGAGGTCGCATTTGACCTT+AGG | - | chr7_3:77974910-77974929 | None:intergenic | 55.0% | |
| GAGTGCTCAAAGGAACTGCG+AGG | - | chr7_3:77974927-77974946 | None:intergenic | 55.0% | |
| AACATCGATGCTAGTGGGGC+GGG | - | chr7_3:77975549-77975568 | None:intergenic | 55.0% | |
| CTGGTCCGAACCAACTACGA+AGG | - | chr7_3:77976409-77976428 | None:intergenic | 55.0% | |
| !! | CTTCGTAGTTGGTTCGGACC+AGG | + | chr7_3:77976407-77976426 | Msa1126440:intron | 55.0% |
| !! | TAGTTGGTTCGGACCAGGCT+GGG | + | chr7_3:77976412-77976431 | Msa1126440:intron | 55.0% |
| ACTGAGTTTCGTTCCCAGCC+TGG | - | chr7_3:77976428-77976447 | None:intergenic | 55.0% | |
| !! | TTGTGCTGGTGGTGGAATGG+CGG | - | chr7_3:77976842-77976861 | None:intergenic | 55.0% |
| !! | AGGTTGTGCTGGTGGTGGAA+TGG | - | chr7_3:77976845-77976864 | None:intergenic | 55.0% |
| TTCTGCTTCGGTGGTTGCGA+GGG | - | chr7_3:77976870-77976889 | None:intergenic | 55.0% | |
| GAGGCACGAGCATTCTACGA+AGG | + | chr7_3:77977129-77977148 | Msa1126440:CDS | 55.0% | |
| GAGCATTCTACGAAGGGTCG+AGG | + | chr7_3:77977136-77977155 | Msa1126440:CDS | 55.0% | |
| ACATCGATGCTAGTGGGGCG+GGG | - | chr7_3:77975548-77975567 | None:intergenic | 60.0% | |
| !! | GTAGTTGGTTCGGACCAGGC+TGG | + | chr7_3:77976411-77976430 | Msa1126440:intron | 60.0% |
| !! | TGTGCTGGTGGTGGAATGGC+GGG | - | chr7_3:77976841-77976860 | None:intergenic | 60.0% |
| CTTCTGCTTCGGTGGTTGCG+AGG | - | chr7_3:77976871-77976890 | None:intergenic | 60.0% | |
| !! | GTGCTGGTGGTGGAATGGCG+GGG | - | chr7_3:77976840-77976859 | None:intergenic | 65.0% |
| TTGCGAGGGCGAGGTTGTGC+TGG | - | chr7_3:77976856-77976875 | None:intergenic | 65.0% | |
| ! | GGGCGAGGTTGTGCTGGTGG+TGG | - | chr7_3:77976850-77976869 | None:intergenic | 70.0% |
| CGAGGGCGAGGTTGTGCTGG+TGG | - | chr7_3:77976853-77976872 | None:intergenic | 70.0% | |
| CTTCGGTGGTTGCGAGGGCG+AGG | - | chr7_3:77976865-77976884 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 77974589 | 77977485 | 77974589 | ID=Msa1126440;Name=Msa1126440 |
| chr7_3 | mRNA | 77974589 | 77977485 | 77974589 | ID=Msa1126440-mRNA-1;Parent=Msa1126440;Name=Msa1126440-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0|0|3|0|357 |
| chr7_3 | exon | 77974589 | 77974831 | 77974589 | ID=Msa1126440-mRNA-1:exon:21658;Parent=Msa1126440-mRNA-1 |
| chr7_3 | exon | 77974853 | 77974989 | 77974853 | ID=Msa1126440-mRNA-1:exon:21659;Parent=Msa1126440-mRNA-1 |
| chr7_3 | exon | 77976792 | 77977485 | 77976792 | ID=Msa1126440-mRNA-1:exon:21660;Parent=Msa1126440-mRNA-1 |
| chr7_3 | CDS | 77974589 | 77974831 | 77974589 | ID=Msa1126440-mRNA-1:cds;Parent=Msa1126440-mRNA-1 |
| chr7_3 | CDS | 77974853 | 77974989 | 77974853 | ID=Msa1126440-mRNA-1:cds;Parent=Msa1126440-mRNA-1 |
| chr7_3 | CDS | 77976792 | 77977485 | 77976792 | ID=Msa1126440-mRNA-1:cds;Parent=Msa1126440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
