Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935830 | sp|Q67YE6|SAP12_ARATH | 61.272 | 173 | 63 | 1 | 1 | 173 | 1 | 169 | 3.40e-72 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935830 | A0A396H9D4 | 92.228 | 193 | 14 | 1 | 1 | 193 | 46 | 237 | 7.59e-128 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033970 | Msa0935830 | 0.861189 | 1.221813e-63 | -8.615850e-47 |
| Msa0039890 | Msa0935830 | 0.810541 | 1.095251e-50 | -8.615850e-47 |
| Msa0051480 | Msa0935830 | 0.802448 | 5.583070e-49 | -8.615850e-47 |
| Msa0081920 | Msa0935830 | 0.856071 | 4.122968e-62 | -8.615850e-47 |
| Msa0087550 | Msa0935830 | 0.808955 | 2.400940e-50 | -8.615850e-47 |
| Msa0099300 | Msa0935830 | -0.807417 | 5.107155e-50 | -8.615850e-47 |
| Msa0652700 | Msa0935830 | 0.844922 | 5.599090e-59 | -8.615850e-47 |
| Msa0697510 | Msa0935830 | 0.802385 | 5.752852e-49 | -8.615850e-47 |
| Msa0738400 | Msa0935830 | 0.830744 | 2.472000e-55 | -8.615850e-47 |
| Msa0826360 | Msa0935830 | 0.800800 | 1.216183e-48 | -8.615850e-47 |
| Msa0841030 | Msa0935830 | 0.836167 | 1.096679e-56 | -8.615850e-47 |
| Msa0128030 | Msa0935830 | 0.875757 | 2.394741e-68 | -8.615850e-47 |
| Msa0134270 | Msa0935830 | 0.817015 | 4.106090e-52 | -8.615850e-47 |
| Msa0146200 | Msa0935830 | 0.806763 | 7.023413e-50 | -8.615850e-47 |
| Msa0180820 | Msa0935830 | 0.806036 | 9.998379e-50 | -8.615850e-47 |
| Msa0182020 | Msa0935830 | 0.827134 | 1.850260e-54 | -8.615850e-47 |
| Msa0207260 | Msa0935830 | 0.871801 | 5.182522e-67 | -8.615850e-47 |
| Msa0224210 | Msa0935830 | 0.824660 | 7.157884e-54 | -8.615850e-47 |
| Msa0390790 | Msa0935830 | 0.825087 | 5.675337e-54 | -8.615850e-47 |
| Msa0414720 | Msa0935830 | 0.816771 | 4.657942e-52 | -8.615850e-47 |
| Msa0459630 | Msa0935830 | 0.830362 | 3.064796e-55 | -8.615850e-47 |
| Msa0480770 | Msa0935830 | 0.835054 | 2.097691e-56 | -8.615850e-47 |
| Msa0481740 | Msa0935830 | 0.834950 | 2.227760e-56 | -8.615850e-47 |
| Msa0481770 | Msa0935830 | 0.834365 | 3.127051e-56 | -8.615850e-47 |
| Msa0253120 | Msa0935830 | 0.816612 | 5.054394e-52 | -8.615850e-47 |
| Msa0284730 | Msa0935830 | 0.806951 | 6.409557e-50 | -8.615850e-47 |
| Msa0291900 | Msa0935830 | 0.821114 | 4.796121e-53 | -8.615850e-47 |
| Msa0508160 | Msa0935830 | 0.801454 | 8.936946e-49 | -8.615850e-47 |
| Msa0560280 | Msa0935830 | 0.816451 | 5.491768e-52 | -8.615850e-47 |
| Msa0858170 | Msa0935830 | 0.828756 | 7.531533e-55 | -8.615850e-47 |
| Msa0870120 | Msa0935830 | 0.966109 | 1.749255e-125 | -8.615850e-47 |
| Msa0876790 | Msa0935830 | 0.817101 | 3.926679e-52 | -8.615850e-47 |
| Msa0935830 | Msa0945230 | 0.835932 | 1.258224e-56 | -8.615850e-47 |
| Msa0935830 | Msa0973000 | 0.990926 | 5.194651e-185 | -8.615850e-47 |
| Msa0935830 | Msa0979050 | 0.801839 | 7.451919e-49 | -8.615850e-47 |
| Msa0935830 | Msa1026080 | 0.829138 | 6.087535e-55 | -8.615850e-47 |
| Msa0935830 | Msa1039650 | 0.800270 | 1.559658e-48 | -8.615850e-47 |
| Msa0935830 | Msa1080650 | 0.831519 | 1.593906e-55 | -8.615850e-47 |
| Msa0935830 | Msa1122930 | -0.805404 | 1.356688e-49 | -8.615850e-47 |
| Msa0935830 | Msa1126440 | 0.831935 | 1.258818e-55 | -8.615850e-47 |
| Msa0935830 | Msa1127360 | 0.804613 | 1.985843e-49 | -8.615850e-47 |
| Msa0935830 | Msa1156490 | 0.814450 | 1.530966e-51 | -8.615850e-47 |
| Msa0935830 | Msa1217260 | 0.803275 | 3.767673e-49 | -8.615850e-47 |
| Msa0935830 | Msa1344220 | 0.805976 | 1.029130e-49 | -8.615850e-47 |
| Msa0935830 | Msa1349830 | 0.813486 | 2.498496e-51 | -8.615850e-47 |
| Msa0935830 | Msa1377050 | 0.804874 | 1.751887e-49 | -8.615850e-47 |
| Msa0935830 | Msa1453600 | 0.833002 | 6.848412e-56 | -8.615850e-47 |
| Msa0935830 | Msa1459930 | 0.802325 | 5.919641e-49 | -8.615850e-47 |
| Msa0935830 | Msa1464020 | 0.816357 | 5.766109e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935830 | MtrunA17_Chr6g0451591 | 92.228 | 193 | 14 | 1 | 1 | 193 | 46 | 237 | 1.46e-131 | 369 |
| Msa0935830 | MtrunA17_Chr7g0257681 | 46.763 | 139 | 67 | 2 | 5 | 139 | 2 | 137 | 3.60e-38 | 132 |
| Msa0935830 | MtrunA17_Chr1g0173421 | 48.921 | 139 | 64 | 2 | 5 | 139 | 2 | 137 | 4.15e-38 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0935830 | AT3G28210.2 | 61.272 | 173 | 63 | 1 | 1 | 173 | 1 | 169 | 3.45e-73 | 219 |
| Msa0935830 | AT3G28210.1 | 61.272 | 173 | 63 | 1 | 1 | 173 | 1 | 169 | 3.45e-73 | 219 |
| Msa0935830 | AT3G57480.2 | 46.250 | 160 | 79 | 3 | 5 | 160 | 2 | 158 | 1.53e-42 | 143 |
| Msa0935830 | AT3G57480.1 | 46.250 | 160 | 79 | 3 | 5 | 160 | 2 | 158 | 1.53e-42 | 143 |
| Msa0935830 | AT2G41835.1 | 51.079 | 139 | 61 | 3 | 5 | 139 | 2 | 137 | 3.49e-41 | 140 |
| Msa0935830 | AT5G48205.1 | 39.091 | 110 | 34 | 2 | 5 | 108 | 2 | 84 | 3.35e-15 | 70.9 |
Find 45 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGACATTCATGTGACTTAT+AGG | 0.238124 | 6_3:-6425843 | None:intergenic |
| CTGTAAAACTTGCCACATTA+AGG | 0.277586 | 6_3:+6426069 | Msa0935830:CDS |
| TAAGGCTTATTGATTCTATA+TGG | 0.292885 | 6_3:+6426285 | Msa0935830:exon |
| CTGCTGTTGTGGTCTGGTTT+CGG | 0.299904 | 6_3:-6425863 | None:intergenic |
| TTAAAGAAACATCGTAGTTC+AGG | 0.309481 | 6_3:+6425962 | Msa0935830:CDS |
| AAGGACAAATAATAGGTTTC+TGG | 0.312800 | 6_3:+6426177 | Msa0935830:CDS |
| AATATTCAAAATTGAAACTA+TGG | 0.320064 | 6_3:+6424975 | Msa0935830:exon |
| CAAATGCAAGGACAAATAAT+AGG | 0.336795 | 6_3:+6426170 | Msa0935830:CDS |
| TAATAGGTTTCTGGCTGCTT+TGG | 0.338054 | 6_3:+6426186 | Msa0935830:CDS |
| TTGCAGCCATCACATGTAAA+AGG | 0.365120 | 6_3:-6425075 | None:intergenic |
| GCTGCTTTGGCTTCAAGAAA+TGG | 0.396007 | 6_3:+6426199 | Msa0935830:CDS |
| ATCTCCTTGCAACGCTTCAC+GGG | 0.399170 | 6_3:-6426022 | None:intergenic |
| GTTGGTTTCTTCTTCTTGCT+AGG | 0.399693 | 6_3:-6425995 | None:intergenic |
| AATCTCCTTGCAACGCTTCA+CGG | 0.405276 | 6_3:-6426023 | None:intergenic |
| TGGCAATGTTTACCTAAATC+TGG | 0.409207 | 6_3:-6425021 | None:intergenic |
| TGAAGAATGCTCCATGTCTA+TGG | 0.426712 | 6_3:+6425901 | Msa0935830:CDS |
| AAAATTGAAACTATGGCATC+AGG | 0.440213 | 6_3:+6424982 | Msa0935830:exon |
| TCCTAGTAATCCATCTGTTA+AGG | 0.442872 | 6_3:+6426267 | Msa0935830:CDS |
| TTGGTTTCTTCTTCTTGCTA+GGG | 0.455380 | 6_3:-6425994 | None:intergenic |
| CAACGCTTCACGGGGCAAGT+TGG | 0.457687 | 6_3:-6426013 | None:intergenic |
| TACATGTGATGGCTGCAAAC+AGG | 0.464886 | 6_3:+6425080 | Msa0935830:CDS |
| GCCTTAACAGATGGATTACT+AGG | 0.510314 | 6_3:-6426268 | None:intergenic |
| TAAAGAAACATCGTAGTTCA+GGG | 0.514380 | 6_3:+6425963 | Msa0935830:CDS |
| TATGGTTAATGTGTAATACA+TGG | 0.526900 | 6_3:+6426303 | Msa0935830:three_prime_UTR |
| AATCAATAAGCCTTAACAGA+TGG | 0.544659 | 6_3:-6426277 | None:intergenic |
| TATGGAGATCACAGGCAACA+TGG | 0.561346 | 6_3:+6425919 | Msa0935830:CDS |
| TAAAAGGAAGGAAATCAAGC+TGG | 0.567522 | 6_3:-6425059 | None:intergenic |
| TGGATTACTAGGAGGAGAAG+TGG | 0.568210 | 6_3:-6426257 | None:intergenic |
| TGCAACAGCAGTTGTTGATG+AGG | 0.577728 | 6_3:-6426149 | None:intergenic |
| GCTGATCATGCTTGTAGTAG+AGG | 0.580042 | 6_3:+6426115 | Msa0935830:CDS |
| AAGCATGATCAGCAGCAAAA+CGG | 0.580672 | 6_3:-6426105 | None:intergenic |
| CAACTGCTGTTGCAAATGCA+AGG | 0.582464 | 6_3:+6426158 | Msa0935830:CDS |
| CAGCAGCAAAACGGTGCTTG+AGG | 0.584113 | 6_3:-6426096 | None:intergenic |
| TCCATGTCTATGGAGATCAC+AGG | 0.587969 | 6_3:+6425911 | Msa0935830:CDS |
| ATGGAGATCACAGGCAACAT+GGG | 0.594572 | 6_3:+6425920 | Msa0935830:CDS |
| GCTGGTGACAATCAACATGC+TGG | 0.594811 | 6_3:-6425041 | None:intergenic |
| ATGGTTAATGTGTAATACAT+GGG | 0.606158 | 6_3:+6426304 | Msa0935830:three_prime_UTR |
| TTGCCCCGTGAAGCGTTGCA+AGG | 0.613440 | 6_3:+6426018 | Msa0935830:CDS |
| ATTGAAACTATGGCATCAGG+TGG | 0.618057 | 6_3:+6424985 | Msa0935830:exon |
| GCCTGTGATCTCCATAGACA+TGG | 0.623654 | 6_3:-6425912 | None:intergenic |
| AGCCATCACATGTAAAAGGA+AGG | 0.626659 | 6_3:-6425071 | None:intergenic |
| GCTTGAGGCACACCTTAATG+TGG | 0.642622 | 6_3:-6426081 | None:intergenic |
| TCTCCTTGCAACGCTTCACG+GGG | 0.654277 | 6_3:-6426021 | None:intergenic |
| TTAACAGATGGATTACTAGG+AGG | 0.670885 | 6_3:-6426265 | None:intergenic |
| CAACATGGGAGAAAACGAAG+AGG | 0.737384 | 6_3:+6425934 | Msa0935830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATTCTTTGATAAAT+AGG | + | chr6_3:6425420-6425439 | Msa0935830:intron | 10.0% |
| !! | TTAACATAATTTATAATAAC+AGG | + | chr6_3:6425799-6425818 | Msa0935830:intron | 10.0% |
| !! | AAATTAATTCTTTGATAAAT+AGG | + | chr6_3:6425420-6425439 | Msa0935830:intron | 10.0% |
| !! | TTAACATAATTTATAATAAC+AGG | + | chr6_3:6425799-6425818 | Msa0935830:intron | 10.0% |
| !! | AATATTCAAAATTGAAACTA+TGG | + | chr6_3:6424975-6424994 | Msa0935830:exon | 15.0% |
| !! | TGTATTATAATCAAATATGT+TGG | + | chr6_3:6425513-6425532 | Msa0935830:intron | 15.0% |
| !! | AATATTCAAAATTGAAACTA+TGG | + | chr6_3:6424975-6424994 | Msa0935830:exon | 15.0% |
| !! | TGTATTATAATCAAATATGT+TGG | + | chr6_3:6425513-6425532 | Msa0935830:intron | 15.0% |
| !!! | TTTTCATTTTAATGGTTTGA+TGG | - | chr6_3:6425595-6425614 | None:intergenic | 20.0% |
| !!! | TTTTCATTTTAATGGTTTGA+TGG | - | chr6_3:6425595-6425614 | None:intergenic | 20.0% |
| ! | CAGGCAAATATAAAACTAAT+CGG | - | chr6_3:6425137-6425156 | None:intergenic | 25.0% |
| ! | TATAATCAAATATGTTGGTC+TGG | + | chr6_3:6425518-6425537 | Msa0935830:intron | 25.0% |
| ! | ATACGATTATGAAACAGAAA+AGG | + | chr6_3:6425773-6425792 | Msa0935830:intron | 25.0% |
| !! | ATAATAACAGGTATTTTGTG+TGG | + | chr6_3:6425811-6425830 | Msa0935830:intron | 25.0% |
| !!! | TAAGGCTTATTGATTCTATA+TGG | + | chr6_3:6426285-6426304 | Msa0935830:exon | 25.0% |
| ! | TATGGTTAATGTGTAATACA+TGG | + | chr6_3:6426303-6426322 | Msa0935830:three_prime_UTR | 25.0% |
| ! | ATGGTTAATGTGTAATACAT+GGG | + | chr6_3:6426304-6426323 | Msa0935830:three_prime_UTR | 25.0% |
| ! | CAGGCAAATATAAAACTAAT+CGG | - | chr6_3:6425137-6425156 | None:intergenic | 25.0% |
| ! | TATAATCAAATATGTTGGTC+TGG | + | chr6_3:6425518-6425537 | Msa0935830:intron | 25.0% |
| ! | ATACGATTATGAAACAGAAA+AGG | + | chr6_3:6425773-6425792 | Msa0935830:intron | 25.0% |
| !! | ATAATAACAGGTATTTTGTG+TGG | + | chr6_3:6425811-6425830 | Msa0935830:intron | 25.0% |
| !!! | TAAGGCTTATTGATTCTATA+TGG | + | chr6_3:6426285-6426304 | Msa0935830:exon | 25.0% |
| ! | TATGGTTAATGTGTAATACA+TGG | + | chr6_3:6426303-6426322 | Msa0935830:three_prime_UTR | 25.0% |
| ! | ATGGTTAATGTGTAATACAT+GGG | + | chr6_3:6426304-6426323 | Msa0935830:three_prime_UTR | 25.0% |
| AAAATTGAAACTATGGCATC+AGG | + | chr6_3:6424982-6425001 | Msa0935830:exon | 30.0% | |
| AACCTAATCAAGAATTGTTC+AGG | - | chr6_3:6425156-6425175 | None:intergenic | 30.0% | |
| ! | TTTCTATTTCTTGCAATCTG+AGG | + | chr6_3:6425215-6425234 | Msa0935830:intron | 30.0% |
| ! | TTCTATTTCTTGCAATCTGA+GGG | + | chr6_3:6425216-6425235 | Msa0935830:intron | 30.0% |
| CTCATTGAAATTGACATAGA+GGG | - | chr6_3:6425368-6425387 | None:intergenic | 30.0% | |
| TTCAAATGTGTCAAATCATG+TGG | + | chr6_3:6425639-6425658 | Msa0935830:intron | 30.0% | |
| TCAGGTGATTAATAAACTTC+AGG | + | chr6_3:6425668-6425687 | Msa0935830:intron | 30.0% | |
| TTAAAGAAACATCGTAGTTC+AGG | + | chr6_3:6425962-6425981 | Msa0935830:CDS | 30.0% | |
| TAAAGAAACATCGTAGTTCA+GGG | + | chr6_3:6425963-6425982 | Msa0935830:CDS | 30.0% | |
| CAAATGCAAGGACAAATAAT+AGG | + | chr6_3:6426170-6426189 | Msa0935830:CDS | 30.0% | |
| AAGGACAAATAATAGGTTTC+TGG | + | chr6_3:6426177-6426196 | Msa0935830:CDS | 30.0% | |
| AATCAATAAGCCTTAACAGA+TGG | - | chr6_3:6426280-6426299 | None:intergenic | 30.0% | |
| AAAATTGAAACTATGGCATC+AGG | + | chr6_3:6424982-6425001 | Msa0935830:exon | 30.0% | |
| AACCTAATCAAGAATTGTTC+AGG | - | chr6_3:6425156-6425175 | None:intergenic | 30.0% | |
| ! | TTTCTATTTCTTGCAATCTG+AGG | + | chr6_3:6425215-6425234 | Msa0935830:intron | 30.0% |
| ! | TTCTATTTCTTGCAATCTGA+GGG | + | chr6_3:6425216-6425235 | Msa0935830:intron | 30.0% |
| CTCATTGAAATTGACATAGA+GGG | - | chr6_3:6425368-6425387 | None:intergenic | 30.0% | |
| TTCAAATGTGTCAAATCATG+TGG | + | chr6_3:6425639-6425658 | Msa0935830:intron | 30.0% | |
| TCAGGTGATTAATAAACTTC+AGG | + | chr6_3:6425668-6425687 | Msa0935830:intron | 30.0% | |
| TTAAAGAAACATCGTAGTTC+AGG | + | chr6_3:6425962-6425981 | Msa0935830:CDS | 30.0% | |
| TAAAGAAACATCGTAGTTCA+GGG | + | chr6_3:6425963-6425982 | Msa0935830:CDS | 30.0% | |
| CAAATGCAAGGACAAATAAT+AGG | + | chr6_3:6426170-6426189 | Msa0935830:CDS | 30.0% | |
| AAGGACAAATAATAGGTTTC+TGG | + | chr6_3:6426177-6426196 | Msa0935830:CDS | 30.0% | |
| AATCAATAAGCCTTAACAGA+TGG | - | chr6_3:6426280-6426299 | None:intergenic | 30.0% | |
| ! | ACAGAAGCTTTTCCAGATTT+AGG | + | chr6_3:6425009-6425028 | Msa0935830:CDS | 35.0% |
| TGGCAATGTTTACCTAAATC+TGG | - | chr6_3:6425024-6425043 | None:intergenic | 35.0% | |
| TAAAAGGAAGGAAATCAAGC+TGG | - | chr6_3:6425062-6425081 | None:intergenic | 35.0% | |
| ! | TTCCTTCCTTTTACATGTGA+TGG | + | chr6_3:6425069-6425088 | Msa0935830:CDS | 35.0% |
| TGCCTGAACAATTCTTGATT+AGG | + | chr6_3:6425151-6425170 | Msa0935830:intron | 35.0% | |
| TTAAGTGATGACAATCTGCA+TGG | + | chr6_3:6425278-6425297 | Msa0935830:intron | 35.0% | |
| TAAGTGATGACAATCTGCAT+GGG | + | chr6_3:6425279-6425298 | Msa0935830:intron | 35.0% | |
| GCTCATTGAAATTGACATAG+AGG | - | chr6_3:6425369-6425388 | None:intergenic | 35.0% | |
| CTATGTCAATTTCAATGAGC+TGG | + | chr6_3:6425369-6425388 | Msa0935830:intron | 35.0% | |
| ! | ATGTTGGTCTGGTCAAAATT+TGG | + | chr6_3:6425529-6425548 | Msa0935830:intron | 35.0% |
| TTGGTTTCTTCTTCTTGCTA+GGG | - | chr6_3:6425997-6426016 | None:intergenic | 35.0% | |
| CTGTAAAACTTGCCACATTA+AGG | + | chr6_3:6426069-6426088 | Msa0935830:CDS | 35.0% | |
| CAAGATTGTGCCAAAAAATC+TGG | + | chr6_3:6426223-6426242 | Msa0935830:CDS | 35.0% | |
| !!! | TGAACGAGATCCAGATTTTT+TGG | - | chr6_3:6426236-6426255 | None:intergenic | 35.0% |
| !! | TTAACAGATGGATTACTAGG+AGG | - | chr6_3:6426268-6426287 | None:intergenic | 35.0% |
| TCCTAGTAATCCATCTGTTA+AGG | + | chr6_3:6426267-6426286 | Msa0935830:CDS | 35.0% | |
| ! | ACAGAAGCTTTTCCAGATTT+AGG | + | chr6_3:6425009-6425028 | Msa0935830:CDS | 35.0% |
| TGGCAATGTTTACCTAAATC+TGG | - | chr6_3:6425024-6425043 | None:intergenic | 35.0% | |
| TAAAAGGAAGGAAATCAAGC+TGG | - | chr6_3:6425062-6425081 | None:intergenic | 35.0% | |
| ! | TTCCTTCCTTTTACATGTGA+TGG | + | chr6_3:6425069-6425088 | Msa0935830:CDS | 35.0% |
| TGCCTGAACAATTCTTGATT+AGG | + | chr6_3:6425151-6425170 | Msa0935830:intron | 35.0% | |
| TTAAGTGATGACAATCTGCA+TGG | + | chr6_3:6425278-6425297 | Msa0935830:intron | 35.0% | |
| TAAGTGATGACAATCTGCAT+GGG | + | chr6_3:6425279-6425298 | Msa0935830:intron | 35.0% | |
| GCTCATTGAAATTGACATAG+AGG | - | chr6_3:6425369-6425388 | None:intergenic | 35.0% | |
| CTATGTCAATTTCAATGAGC+TGG | + | chr6_3:6425369-6425388 | Msa0935830:intron | 35.0% | |
| ! | ATGTTGGTCTGGTCAAAATT+TGG | + | chr6_3:6425529-6425548 | Msa0935830:intron | 35.0% |
| TTGGTTTCTTCTTCTTGCTA+GGG | - | chr6_3:6425997-6426016 | None:intergenic | 35.0% | |
| CTGTAAAACTTGCCACATTA+AGG | + | chr6_3:6426069-6426088 | Msa0935830:CDS | 35.0% | |
| CAAGATTGTGCCAAAAAATC+TGG | + | chr6_3:6426223-6426242 | Msa0935830:CDS | 35.0% | |
| !!! | TGAACGAGATCCAGATTTTT+TGG | - | chr6_3:6426236-6426255 | None:intergenic | 35.0% |
| !! | TTAACAGATGGATTACTAGG+AGG | - | chr6_3:6426268-6426287 | None:intergenic | 35.0% |
| TCCTAGTAATCCATCTGTTA+AGG | + | chr6_3:6426267-6426286 | Msa0935830:CDS | 35.0% | |
| ATTGAAACTATGGCATCAGG+TGG | + | chr6_3:6424985-6425004 | Msa0935830:exon | 40.0% | |
| AGCCATCACATGTAAAAGGA+AGG | - | chr6_3:6425074-6425093 | None:intergenic | 40.0% | |
| TTGCAGCCATCACATGTAAA+AGG | - | chr6_3:6425078-6425097 | None:intergenic | 40.0% | |
| CAAATCATGTGGTTGAGTTC+AGG | + | chr6_3:6425650-6425669 | Msa0935830:intron | 40.0% | |
| CGATTGAAAACACCTGAGTT+CGG | + | chr6_3:6425702-6425721 | Msa0935830:intron | 40.0% | |
| ! | CCAAAGTTTGTTCGAGTCAA+AGG | - | chr6_3:6425728-6425747 | None:intergenic | 40.0% |
| ! | CCTTTGACTCGAACAAACTT+TGG | + | chr6_3:6425725-6425744 | Msa0935830:intron | 40.0% |
| CGGACATTCATGTGACTTAT+AGG | - | chr6_3:6425846-6425865 | None:intergenic | 40.0% | |
| !! | CAATCACTTTTCTGCTGTTG+TGG | - | chr6_3:6425877-6425896 | None:intergenic | 40.0% |
| TGAAGAATGCTCCATGTCTA+TGG | + | chr6_3:6425901-6425920 | Msa0935830:CDS | 40.0% | |
| ! | GTTGGTTTCTTCTTCTTGCT+AGG | - | chr6_3:6425998-6426017 | None:intergenic | 40.0% |
| AAGCATGATCAGCAGCAAAA+CGG | - | chr6_3:6426108-6426127 | None:intergenic | 40.0% | |
| !! | TAATAGGTTTCTGGCTGCTT+TGG | + | chr6_3:6426186-6426205 | Msa0935830:CDS | 40.0% |
| !! | GCCTTAACAGATGGATTACT+AGG | - | chr6_3:6426271-6426290 | None:intergenic | 40.0% |
| ATTGAAACTATGGCATCAGG+TGG | + | chr6_3:6424985-6425004 | Msa0935830:exon | 40.0% | |
| AGCCATCACATGTAAAAGGA+AGG | - | chr6_3:6425074-6425093 | None:intergenic | 40.0% | |
| TTGCAGCCATCACATGTAAA+AGG | - | chr6_3:6425078-6425097 | None:intergenic | 40.0% | |
| CAAATCATGTGGTTGAGTTC+AGG | + | chr6_3:6425650-6425669 | Msa0935830:intron | 40.0% | |
| CGATTGAAAACACCTGAGTT+CGG | + | chr6_3:6425702-6425721 | Msa0935830:intron | 40.0% | |
| ! | CCAAAGTTTGTTCGAGTCAA+AGG | - | chr6_3:6425728-6425747 | None:intergenic | 40.0% |
| ! | CCTTTGACTCGAACAAACTT+TGG | + | chr6_3:6425725-6425744 | Msa0935830:intron | 40.0% |
| CGGACATTCATGTGACTTAT+AGG | - | chr6_3:6425846-6425865 | None:intergenic | 40.0% | |
| !! | CAATCACTTTTCTGCTGTTG+TGG | - | chr6_3:6425877-6425896 | None:intergenic | 40.0% |
| TGAAGAATGCTCCATGTCTA+TGG | + | chr6_3:6425901-6425920 | Msa0935830:CDS | 40.0% | |
| ! | GTTGGTTTCTTCTTCTTGCT+AGG | - | chr6_3:6425998-6426017 | None:intergenic | 40.0% |
| AAGCATGATCAGCAGCAAAA+CGG | - | chr6_3:6426108-6426127 | None:intergenic | 40.0% | |
| !! | TAATAGGTTTCTGGCTGCTT+TGG | + | chr6_3:6426186-6426205 | Msa0935830:CDS | 40.0% |
| !! | GCCTTAACAGATGGATTACT+AGG | - | chr6_3:6426271-6426290 | None:intergenic | 40.0% |
| TACATGTGATGGCTGCAAAC+AGG | + | chr6_3:6425080-6425099 | Msa0935830:CDS | 45.0% | |
| GTGTACTCCTCTCAATACCT+CGG | + | chr6_3:6425334-6425353 | Msa0935830:intron | 45.0% | |
| TGTACTCCTCTCAATACCTC+GGG | + | chr6_3:6425335-6425354 | Msa0935830:intron | 45.0% | |
| !! | ATTGAACCCGAGGTATTGAG+AGG | - | chr6_3:6425344-6425363 | None:intergenic | 45.0% |
| ! | ACTTTTCTGCTGTTGTGGTC+TGG | - | chr6_3:6425872-6425891 | None:intergenic | 45.0% |
| TCCATGTCTATGGAGATCAC+AGG | + | chr6_3:6425911-6425930 | Msa0935830:CDS | 45.0% | |
| TATGGAGATCACAGGCAACA+TGG | + | chr6_3:6425919-6425938 | Msa0935830:CDS | 45.0% | |
| ATGGAGATCACAGGCAACAT+GGG | + | chr6_3:6425920-6425939 | Msa0935830:CDS | 45.0% | |
| CAACATGGGAGAAAACGAAG+AGG | + | chr6_3:6425934-6425953 | Msa0935830:CDS | 45.0% | |
| AATCTCCTTGCAACGCTTCA+CGG | - | chr6_3:6426026-6426045 | None:intergenic | 45.0% | |
| GCTGATCATGCTTGTAGTAG+AGG | + | chr6_3:6426115-6426134 | Msa0935830:CDS | 45.0% | |
| TGCAACAGCAGTTGTTGATG+AGG | - | chr6_3:6426152-6426171 | None:intergenic | 45.0% | |
| CAACTGCTGTTGCAAATGCA+AGG | + | chr6_3:6426158-6426177 | Msa0935830:CDS | 45.0% | |
| ! | GCTGCTTTGGCTTCAAGAAA+TGG | + | chr6_3:6426199-6426218 | Msa0935830:CDS | 45.0% |
| TGGATTACTAGGAGGAGAAG+TGG | - | chr6_3:6426260-6426279 | None:intergenic | 45.0% | |
| TACATGTGATGGCTGCAAAC+AGG | + | chr6_3:6425080-6425099 | Msa0935830:CDS | 45.0% | |
| GTGTACTCCTCTCAATACCT+CGG | + | chr6_3:6425334-6425353 | Msa0935830:intron | 45.0% | |
| TGTACTCCTCTCAATACCTC+GGG | + | chr6_3:6425335-6425354 | Msa0935830:intron | 45.0% | |
| !! | ATTGAACCCGAGGTATTGAG+AGG | - | chr6_3:6425344-6425363 | None:intergenic | 45.0% |
| ! | ACTTTTCTGCTGTTGTGGTC+TGG | - | chr6_3:6425872-6425891 | None:intergenic | 45.0% |
| TCCATGTCTATGGAGATCAC+AGG | + | chr6_3:6425911-6425930 | Msa0935830:CDS | 45.0% | |
| TATGGAGATCACAGGCAACA+TGG | + | chr6_3:6425919-6425938 | Msa0935830:CDS | 45.0% | |
| ATGGAGATCACAGGCAACAT+GGG | + | chr6_3:6425920-6425939 | Msa0935830:CDS | 45.0% | |
| CAACATGGGAGAAAACGAAG+AGG | + | chr6_3:6425934-6425953 | Msa0935830:CDS | 45.0% | |
| AATCTCCTTGCAACGCTTCA+CGG | - | chr6_3:6426026-6426045 | None:intergenic | 45.0% | |
| GCTGATCATGCTTGTAGTAG+AGG | + | chr6_3:6426115-6426134 | Msa0935830:CDS | 45.0% | |
| TGCAACAGCAGTTGTTGATG+AGG | - | chr6_3:6426152-6426171 | None:intergenic | 45.0% | |
| CAACTGCTGTTGCAAATGCA+AGG | + | chr6_3:6426158-6426177 | Msa0935830:CDS | 45.0% | |
| ! | GCTGCTTTGGCTTCAAGAAA+TGG | + | chr6_3:6426199-6426218 | Msa0935830:CDS | 45.0% |
| TGGATTACTAGGAGGAGAAG+TGG | - | chr6_3:6426260-6426279 | None:intergenic | 45.0% | |
| !!! | ATATATATTTTTCATTTTAA+TGG | - | chr6_3:6425603-6425622 | None:intergenic | 5.0% |
| !!! | ATATATATTTTTCATTTTAA+TGG | - | chr6_3:6425603-6425622 | None:intergenic | 5.0% |
| GCTGGTGACAATCAACATGC+TGG | - | chr6_3:6425044-6425063 | None:intergenic | 50.0% | |
| ! | ATCTGCATGGGTTGACCTGA+TGG | + | chr6_3:6425291-6425310 | Msa0935830:intron | 50.0% |
| ! | ATGGGTTGACCTGATGGTGT+TGG | + | chr6_3:6425297-6425316 | Msa0935830:intron | 50.0% |
| !! | TGACCTGATGGTGTTGGCTT+TGG | + | chr6_3:6425303-6425322 | Msa0935830:intron | 50.0% |
| GATCCAAAGCCAACACCATC+AGG | - | chr6_3:6425309-6425328 | None:intergenic | 50.0% | |
| CATAGAGGGAATTGAACCCG+AGG | - | chr6_3:6425354-6425373 | None:intergenic | 50.0% | |
| ! | CTGCTGTTGTGGTCTGGTTT+CGG | - | chr6_3:6425866-6425885 | None:intergenic | 50.0% |
| GCCTGTGATCTCCATAGACA+TGG | - | chr6_3:6425915-6425934 | None:intergenic | 50.0% | |
| ATCTCCTTGCAACGCTTCAC+GGG | - | chr6_3:6426025-6426044 | None:intergenic | 50.0% | |
| GCTTGAGGCACACCTTAATG+TGG | - | chr6_3:6426084-6426103 | None:intergenic | 50.0% | |
| GCTGGTGACAATCAACATGC+TGG | - | chr6_3:6425044-6425063 | None:intergenic | 50.0% | |
| ! | ATCTGCATGGGTTGACCTGA+TGG | + | chr6_3:6425291-6425310 | Msa0935830:intron | 50.0% |
| ! | ATGGGTTGACCTGATGGTGT+TGG | + | chr6_3:6425297-6425316 | Msa0935830:intron | 50.0% |
| !! | TGACCTGATGGTGTTGGCTT+TGG | + | chr6_3:6425303-6425322 | Msa0935830:intron | 50.0% |
| GATCCAAAGCCAACACCATC+AGG | - | chr6_3:6425309-6425328 | None:intergenic | 50.0% | |
| CATAGAGGGAATTGAACCCG+AGG | - | chr6_3:6425354-6425373 | None:intergenic | 50.0% | |
| ! | CTGCTGTTGTGGTCTGGTTT+CGG | - | chr6_3:6425866-6425885 | None:intergenic | 50.0% |
| GCCTGTGATCTCCATAGACA+TGG | - | chr6_3:6425915-6425934 | None:intergenic | 50.0% | |
| ATCTCCTTGCAACGCTTCAC+GGG | - | chr6_3:6426025-6426044 | None:intergenic | 50.0% | |
| GCTTGAGGCACACCTTAATG+TGG | - | chr6_3:6426084-6426103 | None:intergenic | 50.0% | |
| TCGAGTCAAAGGCCGAACTC+AGG | - | chr6_3:6425717-6425736 | None:intergenic | 55.0% | |
| TCTCCTTGCAACGCTTCACG+GGG | - | chr6_3:6426024-6426043 | None:intergenic | 55.0% | |
| CAGCAGCAAAACGGTGCTTG+AGG | - | chr6_3:6426099-6426118 | None:intergenic | 55.0% | |
| TCGAGTCAAAGGCCGAACTC+AGG | - | chr6_3:6425717-6425736 | None:intergenic | 55.0% | |
| TCTCCTTGCAACGCTTCACG+GGG | - | chr6_3:6426024-6426043 | None:intergenic | 55.0% | |
| CAGCAGCAAAACGGTGCTTG+AGG | - | chr6_3:6426099-6426118 | None:intergenic | 55.0% | |
| CAACGCTTCACGGGGCAAGT+TGG | - | chr6_3:6426016-6426035 | None:intergenic | 60.0% | |
| !! | TTGCCCCGTGAAGCGTTGCA+AGG | + | chr6_3:6426018-6426037 | Msa0935830:CDS | 60.0% |
| CAACGCTTCACGGGGCAAGT+TGG | - | chr6_3:6426016-6426035 | None:intergenic | 60.0% | |
| !! | TTGCCCCGTGAAGCGTTGCA+AGG | + | chr6_3:6426018-6426037 | Msa0935830:CDS | 60.0% |
| TGCACGCGCGCGAAAACTCG+AGG | + | chr6_3:6425443-6425462 | Msa0935830:intron | 65.0% | |
| TGCACGCGCGCGAAAACTCG+AGG | + | chr6_3:6425443-6425462 | Msa0935830:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 6424925 | 6426373 | 6424925 | ID=Msa0935830;Name=Msa0935830 |
| chr6_3 | mRNA | 6424925 | 6426373 | 6424925 | ID=Msa0935830-mRNA-1;Parent=Msa0935830;Name=Msa0935830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69|1|1|1|1|1|2|76|194 |
| chr6_3 | exon | 6424925 | 6425101 | 6424925 | ID=Msa0935830-mRNA-1:exon:2014;Parent=Msa0935830-mRNA-1 |
| chr6_3 | exon | 6425821 | 6426373 | 6425821 | ID=Msa0935830-mRNA-1:exon:2015;Parent=Msa0935830-mRNA-1 |
| chr6_3 | five_prime_UTR | 6424925 | 6424993 | 6424925 | ID=Msa0935830-mRNA-1:five_prime_utr;Parent=Msa0935830-mRNA-1 |
| chr6_3 | CDS | 6424994 | 6425101 | 6424994 | ID=Msa0935830-mRNA-1:cds;Parent=Msa0935830-mRNA-1 |
| chr6_3 | CDS | 6425821 | 6426297 | 6425821 | ID=Msa0935830-mRNA-1:cds;Parent=Msa0935830-mRNA-1 |
| chr6_3 | three_prime_UTR | 6426298 | 6426373 | 6426298 | ID=Msa0935830-mRNA-1:three_prime_utr;Parent=Msa0935830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
