AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080650 MtrunA17_Chr7g0267281 93.913 230 11 1 128 357 1 227 2.11e-159 445
Msa1080650 MtrunA17_Chr7g0267281 72.093 129 28 2 1 122 92 219 7.45e-55 179
Msa1080650 MtrunA17_Chr7g0267231 78.261 230 47 1 128 357 1 227 1.24e-119 345
Msa1080650 MtrunA17_Chr7g0267231 69.925 133 29 2 1 126 92 220 1.04e-55 181
Msa1080650 MtrunA17_Chr7g0267291 72.936 218 56 2 133 349 2 217 1.89e-112 330
Msa1080650 MtrunA17_Chr7g0267291 89.474 133 7 1 1 126 89 221 5.78e-78 241
Msa1080650 MtrunA17_Chr7g0267301 70.996 231 60 5 131 356 3 231 1.41e-106 311
Msa1080650 MtrunA17_Chr7g0267301 77.273 132 23 1 1 125 93 224 1.54e-64 204
Msa1080650 MtrunA17_Chr1g0177521 47.418 213 107 2 146 356 8 217 7.64e-50 166
Msa1080650 MtrunA17_Chr1g0177521 48.760 121 55 1 2 115 81 201 5.09e-29 111
Msa1080650 MtrunA17_Chr4g0067041 37.398 246 128 7 128 355 1 238 1.26e-47 161
Msa1080650 MtrunA17_Chr4g0067041 35.484 124 69 2 1 117 105 224 1.50e-18 84.0
Msa1080650 MtrunA17_Chr7g0267181 43.043 230 122 5 131 355 2 227 6.22e-46 156
Msa1080650 MtrunA17_Chr7g0267181 42.478 113 54 3 5 110 99 207 1.13e-20 89.4
Msa1080650 MtrunA17_Chr1g0177471 40.562 249 121 6 128 356 1 242 9.70e-44 151
Msa1080650 MtrunA17_Chr1g0177471 39.837 123 63 2 1 116 108 226 2.08e-21 92.0
Msa1080650 MtrunA17_Chr1g0177531 49.194 124 59 3 159 282 11 130 1.65e-25 99.8
Msa1080650 MtrunA17_Chr6g0478671 32.258 186 108 7 155 335 5 177 6.71e-22 92.4
Msa1080650 MtrunA17_Chr6g0479071 30.769 182 113 8 163 335 2 179 8.19e-18 81.3
Msa1080650 MtrunA17_Chr6g0478661 32.432 185 103 8 158 335 5 174 9.63e-18 80.9
Msa1080650 MtrunA17_Chr6g0479081 31.319 182 112 8 163 335 2 179 7.07e-17 78.6
Msa1080650 MtrunA17_Chr2g0280851 29.775 178 112 6 181 356 36 202 7.62e-15 72.4
Msa1080650 MtrunA17_Chr5g0440571 26.047 215 142 6 145 348 41 249 4.07e-14 71.6
Msa1080650 MtrunA17_Chr1g0206161 22.845 232 143 7 143 356 17 230 3.62e-13 68.2
Msa1080650 MtrunA17_Chr7g0267371 29.493 217 125 10 148 354 4 202 1.01e-12 66.6
Msa1080650 MtrunA17_Chr7g0267361 29.442 197 117 5 159 347 67 249 7.06e-12 65.1
Msa1080650 MtrunA17_Chr5g0433201 33.735 166 95 6 123 279 29 188 3.76e-11 62.8
Msa1080650 MtrunA17_Chr7g0267321 23.308 266 178 7 85 329 69 329 9.59e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080650 AT2G35980.1 43.478 230 119 6 132 356 4 227 5.53e-60 193
Msa1080650 AT2G35980.1 38.983 118 60 3 1 110 93 206 6.45e-21 90.5
Msa1080650 AT3G11650.1 37.398 246 125 6 131 356 3 239 1.02e-50 169
Msa1080650 AT3G11650.1 36.885 122 65 3 3 116 108 225 3.92e-17 80.1
Msa1080650 AT5G06320.1 38.589 241 126 5 128 356 1 231 4.79e-49 165
Msa1080650 AT5G06320.1 37.600 125 68 2 3 120 101 222 1.15e-22 95.5
Msa1080650 AT2G35460.1 36.820 239 128 6 136 356 5 238 1.12e-45 156
Msa1080650 AT2G35460.1 38.525 122 64 2 3 117 108 225 6.38e-21 90.9
Msa1080650 AT1G32270.2 33.548 155 98 2 190 343 1 151 9.72e-19 86.7
Msa1080650 AT1G32270.1 33.333 156 99 2 190 344 1 152 2.65e-18 85.9
Msa1080650 AT3G11660.1 27.551 196 127 6 168 354 18 207 2.10e-15 74.7
Msa1080650 AT4G05220.1 23.590 195 137 4 147 333 16 206 2.30e-15 75.1
Msa1080650 AT5G53730.1 24.309 181 128 4 181 356 37 213 9.02e-12 64.3

Find 66 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCTTAGGTTTGAGCTTTC+CGG 0.214081 7_2:+80231588 None:intergenic
TAGAACTCAAAGGAACTTTA+AGG 0.223136 7_2:+80229079 None:intergenic
GCTGTCTCTTCAGTTTCTTC+TGG 0.267585 7_2:-80229581 Msa1080650:CDS
AGGTTTGAGCTTTCCGGATA+TGG 0.277292 7_2:+80231594 None:intergenic
TGAGGCTTTACTTCAGGATT+AGG 0.300660 7_2:-80229155 Msa1080650:CDS
TGTGCTGGTGGTGGAATGGC+GGG 0.331387 7_2:+80229642 None:intergenic
TCTATGTGAGGCTTTACTTC+AGG 0.355824 7_2:-80229161 Msa1080650:CDS
TTTCTCAGGACAACATGTTT+TGG 0.356714 7_2:-80229244 Msa1080650:CDS
AGACTCGGGGATTTGATATC+TGG 0.358540 7_2:-80229129 Msa1080650:CDS
GGTTGCTGCTCTTCTTGTAT+TGG 0.359850 7_2:+80229280 None:intergenic
ATCGCACTCATAGTTCTTGC+TGG 0.377894 7_2:-80229549 Msa1080650:CDS
GCGAGGTCGCATTTGACCTT+AGG 0.395951 7_2:+80231574 None:intergenic
TTGCGAGGGCGAGGTTGTGC+TGG 0.439367 7_2:+80229627 None:intergenic
TTCTGCTTCGGTGGTTGCGA+GGG 0.450941 7_2:+80229613 None:intergenic
TCCTGAGAAAACAGCACTCA+TGG 0.453273 7_2:+80229257 None:intergenic
GGGCGAGGTTGTGCTGGTGG+TGG 0.461649 7_2:+80229633 None:intergenic
GAGTGCTATTCTTCTTGTCT+TGG 0.462562 7_2:+80231758 None:intergenic
AGGTTGTGCTGGTGGTGGAA+TGG 0.471755 7_2:+80229638 None:intergenic
CTTCTGCTTCGGTGGTTGCG+AGG 0.479014 7_2:+80229612 None:intergenic
AGCAACAACAACTTCTGCTT+CGG 0.479078 7_2:+80229601 None:intergenic
TTTAGGATTAGGTTCAAACT+TGG 0.485508 7_2:-80231622 Msa1080650:CDS
CTTCGGTGGTTGCGAGGGCG+AGG 0.496928 7_2:+80229618 None:intergenic
TAGTACGCACCGTTCAATTG+TGG 0.499335 7_2:+80229669 None:intergenic
CAATTGAACGGTGCGTACTA+CGG 0.499960 7_2:-80229666 Msa1080650:CDS
AAACTTGGAGACTCCATATC+CGG 0.505174 7_2:-80231607 Msa1080650:CDS
TTGTGCTGGTGGTGGAATGG+CGG 0.506260 7_2:+80229641 None:intergenic
TTAAGGTCACATTTCACCTT+AGG 0.511449 7_2:+80229096 None:intergenic
AACAACAACTTCTGCTTCGG+TGG 0.516162 7_2:+80229604 None:intergenic
TCAGGATTAGGTTCAGACTC+GGG 0.521074 7_2:-80229143 Msa1080650:CDS
CAACATCTATTATGATAAAG+TGG 0.524570 7_2:-80229373 Msa1080650:CDS
GAAGCTCAAGCATTCTATGA+AGG 0.529600 7_2:-80231829 Msa1080650:CDS
TTCGTCGACATAGAACTTGA+AGG 0.533993 7_2:+80229485 None:intergenic
CGAGGGCGAGGTTGTGCTGG+TGG 0.535016 7_2:+80229630 None:intergenic
GACATAGAACTTGAAGGGGC+GGG 0.537286 7_2:+80229491 None:intergenic
GAATTCAAAGGATGTTGCAT+TGG 0.540349 7_2:+80229050 None:intergenic
CCTGAGAAAACAGCACTCAT+GGG 0.540981 7_2:+80229258 None:intergenic
CAACATCCTTTGAATTCACT+AGG 0.547733 7_2:-80229044 Msa1080650:CDS
TTCAGGATTAGGTTCAGACT+CGG 0.548093 7_2:-80229144 Msa1080650:CDS
ATCTGGTGATTACAAGCCTA+AGG 0.550508 7_2:-80229112 Msa1080650:CDS
TCGTCGACATAGAACTTGAA+GGG 0.552525 7_2:+80229486 None:intergenic
GAGCATTCTACGAAGGGTCG+AGG 0.554221 7_2:-80229344 Msa1080650:CDS
ATCCGGAAAGCTCAAACCTA+AGG 0.555906 7_2:-80231590 Msa1080650:CDS
GGTGGGTATAAGTCGAATGA+AGG 0.561749 7_2:+80231516 None:intergenic
GTACAACGAGATAGAAGATA+AGG 0.563903 7_2:+80229517 None:intergenic
AAGCATTCTATGAAGGGTCG+AGG 0.566567 7_2:-80231822 Msa1080650:CDS
ACATAGAACTTGAAGGGGCG+GGG 0.572104 7_2:+80229492 None:intergenic
AACTCAACATCGCACTTGGT+GGG 0.572755 7_2:+80231499 None:intergenic
CAGGATTAGGTTCAGACTCG+GGG 0.604096 7_2:-80229142 Msa1080650:CDS
AACAAGCAACCACAATTGAA+CGG 0.610539 7_2:-80229678 Msa1080650:CDS
CAATACACTAAACTACAACA+TGG 0.612954 7_2:-80229433 Msa1080650:CDS
AAGCTCAAGCATTCTATGAA+GGG 0.614742 7_2:-80231828 Msa1080650:CDS
CTTGGTCCTAGTGAATTCAA+AGG 0.619486 7_2:+80229038 None:intergenic
CGACATAGAACTTGAAGGGG+CGG 0.619644 7_2:+80229490 None:intergenic
GTGCTGGTGGTGGAATGGCG+GGG 0.625212 7_2:+80229643 None:intergenic
GTTGCATTACGAGTGCTCAA+AGG 0.627594 7_2:+80231547 None:intergenic
CTGAGAAAACAGCACTCATG+GGG 0.650128 7_2:+80229259 None:intergenic
CGTCGACATAGAACTTGAAG+GGG 0.659465 7_2:+80229487 None:intergenic
GTAGAAATCAACATCACACT+TGG 0.661589 7_2:+80229020 None:intergenic
GAGGCACGAGCATTCTACGA+AGG 0.666387 7_2:-80229351 Msa1080650:CDS
AGGCACGAGCATTCTACGAA+GGG 0.671696 7_2:-80229350 Msa1080650:CDS
AAGTTTATGATATCTATGTG+AGG 0.684871 7_2:-80229173 Msa1080650:CDS
CATCTATTATGATAAAGTGG+AGG 0.687150 7_2:-80229370 Msa1080650:CDS
AAGAATAGCACTCCTATGAG+CGG 0.689932 7_2:-80231748 Msa1080650:CDS
GTGTGTGATCACATCAACAT+TGG 0.703529 7_2:+80229317 None:intergenic
GATAGAAGATAAGGACTGCG+AGG 0.714786 7_2:+80229526 None:intergenic
GAGTGCTCAAAGGAACTGCG+AGG 0.755136 7_2:+80231557 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAGTAATATAAATAA+AGG + chr7_2:80229758-80229777 None:intergenic 10.0%
!! TTATAAATTTGTAAATAGAA+AGG - chr7_2:80230363-80230382 Msa1080650:intron 10.0%
!! AATTCAATAGTTAAATTAGA+TGG - chr7_2:80229861-80229880 Msa1080650:intron 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr7_2:80230622-80230641 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr7_2:80230621-80230640 Msa1080650:intron 15.0%
!! TTAATCATATTTATAAAGCA+TGG - chr7_2:80231203-80231222 Msa1080650:intron 15.0%
!! TTCAACAAAGATAAAAATGT+TGG - chr7_2:80229236-80229255 Msa1080650:CDS 20.0%
!! TTGTATGTAATTCTGATAAT+TGG - chr7_2:80229500-80229519 Msa1080650:CDS 20.0%
!!! TCTAGTTGTTTTTGTTTTAA+TGG - chr7_2:80229596-80229615 Msa1080650:CDS 20.0%
!!! CTAGTTGTTTTTGTTTTAAT+GGG - chr7_2:80229597-80229616 Msa1080650:CDS 20.0%
!! ATACATTTATCAAACACAAT+TGG + chr7_2:80229794-80229813 None:intergenic 20.0%
!! TTAAATTAGATGGTTAAAGT+AGG - chr7_2:80229871-80229890 Msa1080650:intron 20.0%
!!! GATTTTTTTCCTTACAAATT+AGG + chr7_2:80230079-80230098 None:intergenic 20.0%
!!! TTTTCATTGACTATTGATTA+TGG - chr7_2:80230190-80230209 Msa1080650:intron 20.0%
!!! AAGGTTATTATTTATTTTGC+TGG - chr7_2:80230382-80230401 Msa1080650:intron 20.0%
!!! AGGTTATTATTTATTTTGCT+GGG - chr7_2:80230383-80230402 Msa1080650:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr7_2:80230535-80230554 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr7_2:80230612-80230631 Msa1080650:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr7_2:80230655-80230674 None:intergenic 20.0%
!! ATTCAATTTCTACTTTGTTA+AGG + chr7_2:80230935-80230954 None:intergenic 20.0%
!! TTTATAGCAAATATTCAACA+CGG - chr7_2:80230960-80230979 Msa1080650:intron 20.0%
!! TGTATATATAGAAAGGAATA+GGG + chr7_2:80231026-80231045 None:intergenic 20.0%
!!! TTTCTTGTTTTTGTATAGAG+TGG - chr7_2:80229658-80229677 Msa1080650:CDS 25.0%
!!! TTCTTGTTTTTGTATAGAGT+GGG - chr7_2:80229659-80229678 Msa1080650:CDS 25.0%
!! TTTTTCCTTACAAATTAGGA+CGG + chr7_2:80230075-80230094 None:intergenic 25.0%
!! ACTATTGATTATGGAGAAAA+TGG - chr7_2:80230199-80230218 Msa1080650:intron 25.0%
!!! TGTCTTTTTTGCTTACATTT+TGG - chr7_2:80230298-80230317 Msa1080650:intron 25.0%
!!! GTCTTTTTTGCTTACATTTT+GGG - chr7_2:80230299-80230318 Msa1080650:intron 25.0%
! ATTTAATCTTGTCATCACAT+GGG + chr7_2:80230426-80230445 None:intergenic 25.0%
! ATGACAAGATTAAATGTCAA+AGG - chr7_2:80230431-80230450 Msa1080650:intron 25.0%
! TGTTAAGGAAGCTATATAAA+TGG + chr7_2:80230920-80230939 None:intergenic 25.0%
! GTATATATAGAAAGGAATAG+GGG + chr7_2:80231025-80231044 None:intergenic 25.0%
! GTGTATATATAGAAAGGAAT+AGG + chr7_2:80231027-80231046 None:intergenic 25.0%
!!! TAGATGTTGAGTTTTTTGTT+TGG + chr7_2:80231525-80231544 None:intergenic 25.0%
! CAACATCTATTATGATAAAG+TGG - chr7_2:80231536-80231555 Msa1080650:CDS 25.0%
! AAGTTTATGATATCTATGTG+AGG - chr7_2:80231736-80231755 Msa1080650:CDS 25.0%
!!! TTGGTATTTTTAGAACTCAA+AGG + chr7_2:80231843-80231862 None:intergenic 25.0%
!!! AGATACCGAGTTTTTTGTTA+GGG + chr7_2:80229046-80229065 None:intergenic 30.0%
!!! TAGATACCGAGTTTTTTGTT+AGG + chr7_2:80229047-80229066 None:intergenic 30.0%
! TCTATGTGAAGCTCTATTTT+AGG - chr7_2:80229270-80229289 Msa1080650:CDS 30.0%
!!! TGAAGCTCTATTTTAGGATT+AGG - chr7_2:80229276-80229295 Msa1080650:CDS 30.0%
! TTTAGGATTAGGTTCAAACT+TGG - chr7_2:80229287-80229306 Msa1080650:CDS 30.0%
TAATTAACATCGATGCTAGT+GGG + chr7_2:80229982-80230001 None:intergenic 30.0%
TTAATTAACATCGATGCTAG+TGG + chr7_2:80229983-80230002 None:intergenic 30.0%
CATTTAATCTTGTCATCACA+TGG + chr7_2:80230427-80230446 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr7_2:80230703-80230722 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr7_2:80230704-80230723 Msa1080650:intron 30.0%
!!! AAATGGTTGATGATTTTGAC+CGG + chr7_2:80230903-80230922 None:intergenic 30.0%
!!! ATAGGGGTTGGATTTTTTAT+GGG + chr7_2:80231009-80231028 None:intergenic 30.0%
!!! AATAGGGGTTGGATTTTTTA+TGG + chr7_2:80231010-80231029 None:intergenic 30.0%
TGTGGTGTGTATATATAGAA+AGG + chr7_2:80231033-80231052 None:intergenic 30.0%
GTATAAAATTGATGCCTTGA+TGG + chr7_2:80231093-80231112 None:intergenic 30.0%
AATGAGAGCAAGATATACTA+TGG + chr7_2:80231185-80231204 None:intergenic 30.0%
CAATACACTAAACTACAACA+TGG - chr7_2:80231476-80231495 Msa1080650:intron 30.0%
CATCTATTATGATAAAGTGG+AGG - chr7_2:80231539-80231558 Msa1080650:CDS 30.0%
TAGAACTCAAAGGAACTTTA+AGG + chr7_2:80231833-80231852 None:intergenic 30.0%
!!! GAGTTTTTTGTTAGGGTTGT+GGG + chr7_2:80229039-80229058 None:intergenic 35.0%
CACAACCCTAACAAAAAACT+CGG - chr7_2:80229038-80229057 Msa1080650:CDS 35.0%
AAGCTCAAGCATTCTATGAA+GGG - chr7_2:80229081-80229100 Msa1080650:CDS 35.0%
AACAACTAGAGTACATTGCA+TGG + chr7_2:80229586-80229605 None:intergenic 35.0%
AATTAACATCGATGCTAGTG+GGG + chr7_2:80229981-80230000 None:intergenic 35.0%
!!! TTGCTTACATTTTGGGACAA+AGG - chr7_2:80230306-80230325 Msa1080650:intron 35.0%
!!! TTTTGGGACAAAGGAATTGA+CGG - chr7_2:80230315-80230334 Msa1080650:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr7_2:80230469-80230488 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr7_2:80230569-80230588 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr7_2:80230573-80230592 None:intergenic 35.0%
AAAAATTGTACCCACTCAAG+AGG - chr7_2:80230775-80230794 Msa1080650:intron 35.0%
AAAATTGTACCCACTCAAGA+GGG - chr7_2:80230776-80230795 Msa1080650:intron 35.0%
AAACAAATTCCCTCTTGAGT+GGG + chr7_2:80230788-80230807 None:intergenic 35.0%
!!! GGATTTTTTATGGGATAACG+CGG + chr7_2:80231000-80231019 None:intergenic 35.0%
ATATAGAAAGGAATAGGGGT+TGG + chr7_2:80231021-80231040 None:intergenic 35.0%
GTTGAAGAAAAGTTGTGTTG+TGG + chr7_2:80231119-80231138 None:intergenic 35.0%
AACAAGCAACCACAATTGAA+CGG - chr7_2:80231231-80231250 Msa1080650:intron 35.0%
GTACAACGAGATAGAAGATA+AGG + chr7_2:80231395-80231414 None:intergenic 35.0%
! TTTCTCAGGACAACATGTTT+TGG - chr7_2:80231665-80231684 Msa1080650:intron 35.0%
TTAAGGTCACATTTCACCTT+AGG + chr7_2:80231816-80231835 None:intergenic 35.0%
GAATTCAAAGGATGTTGCAT+TGG + chr7_2:80231862-80231881 None:intergenic 35.0%
CAACATCCTTTGAATTCACT+AGG - chr7_2:80231865-80231884 Msa1080650:CDS 35.0%
GTAGAAATCAACATCACACT+TGG + chr7_2:80231892-80231911 None:intergenic 35.0%
!!! CGAGTTTTTTGTTAGGGTTG+TGG + chr7_2:80229040-80229059 None:intergenic 40.0%
GAAGCTCAAGCATTCTATGA+AGG - chr7_2:80229080-80229099 Msa1080650:CDS 40.0%
! GAGTGCTATTCTTCTTGTCT+TGG + chr7_2:80229154-80229173 None:intergenic 40.0%
AAGAATAGCACTCCTATGAG+CGG - chr7_2:80229161-80229180 Msa1080650:CDS 40.0%
AAACTTGGAGACTCCATATC+CGG - chr7_2:80229302-80229321 Msa1080650:CDS 40.0%
TTAGAACTCAACATCGCACT+TGG + chr7_2:80229417-80229436 None:intergenic 40.0%
ACTAGAGTACATTGCATGGA+TGG + chr7_2:80229582-80229601 None:intergenic 40.0%
!!! TCTTTTAGGGTCTCTCTAGT+TGG + chr7_2:80229943-80229962 None:intergenic 40.0%
ACTAGAGAGACCCTAAAAGA+AGG - chr7_2:80229943-80229962 Msa1080650:intron 40.0%
! GGGTGACAATCCTTCTTTTA+GGG + chr7_2:80229956-80229975 None:intergenic 40.0%
! TCCATCCGTCCTAATTTGTA+AGG - chr7_2:80230067-80230086 Msa1080650:intron 40.0%
TCCTTACAAATTAGGACGGA+TGG + chr7_2:80230071-80230090 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr7_2:80230708-80230727 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr7_2:80230570-80230589 None:intergenic 40.0%
CGGAGCGAGTATAAGTATAA+CGG - chr7_2:80230724-80230743 Msa1080650:intron 40.0%
AGCGAGTATAAGTATAACGG+CGG - chr7_2:80230727-80230746 Msa1080650:intron 40.0%
GAAACAAATTCCCTCTTGAG+TGG + chr7_2:80230789-80230808 None:intergenic 40.0%
TGTTCAATCACCTTCGTAGT+TGG - chr7_2:80230824-80230843 Msa1080650:intron 40.0%
AATCACCTTCGTAGTTGGTT+CGG - chr7_2:80230829-80230848 Msa1080650:intron 40.0%
GCAAAGTTTGATGGAGATTG+TGG + chr7_2:80230879-80230898 None:intergenic 40.0%
ATCTCCATCAAACTTTGCAC+CGG - chr7_2:80230881-80230900 Msa1080650:intron 40.0%
GTGAGATAAGAAGCAAAGTG+TGG + chr7_2:80231051-80231070 None:intergenic 40.0%
ACCATACTTTCTCTCCATCA+AGG - chr7_2:80231076-80231095 Msa1080650:intron 40.0%
AGCAACAACAACTTCTGCTT+CGG + chr7_2:80231311-80231330 None:intergenic 40.0%
TCGTCGACATAGAACTTGAA+GGG + chr7_2:80231426-80231445 None:intergenic 40.0%
TTCGTCGACATAGAACTTGA+AGG + chr7_2:80231427-80231446 None:intergenic 40.0%
GTGTGTGATCACATCAACAT+TGG + chr7_2:80231595-80231614 None:intergenic 40.0%
TCTATGTGAGGCTTTACTTC+AGG - chr7_2:80231748-80231767 Msa1080650:CDS 40.0%
TGAGGCTTTACTTCAGGATT+AGG - chr7_2:80231754-80231773 Msa1080650:CDS 40.0%
TTCAGGATTAGGTTCAGACT+CGG - chr7_2:80231765-80231784 Msa1080650:CDS 40.0%
ATCTGGTGATTACAAGCCTA+AGG - chr7_2:80231797-80231816 Msa1080650:CDS 40.0%
CTTGGTCCTAGTGAATTCAA+AGG + chr7_2:80231874-80231893 None:intergenic 40.0%
AAGCATTCTATGAAGGGTCG+AGG - chr7_2:80229087-80229106 Msa1080650:CDS 45.0%
CCAGAAAAAACACCGCTCAT+AGG + chr7_2:80229176-80229195 None:intergenic 45.0%
!!! CCTATGAGCGGTGTTTTTTC+TGG - chr7_2:80229173-80229192 Msa1080650:CDS 45.0%
AGGTTTGAGCTTTCCGGATA+TGG + chr7_2:80229318-80229337 None:intergenic 45.0%
ATCCGGAAAGCTCAAACCTA+AGG - chr7_2:80229319-80229338 Msa1080650:CDS 45.0%
GACCTTAGGTTTGAGCTTTC+CGG + chr7_2:80229324-80229343 None:intergenic 45.0%
GTTGCATTACGAGTGCTCAA+AGG + chr7_2:80229365-80229384 None:intergenic 45.0%
GGTGGGTATAAGTCGAATGA+AGG + chr7_2:80229396-80229415 None:intergenic 45.0%
AACTCAACATCGCACTTGGT+GGG + chr7_2:80229413-80229432 None:intergenic 45.0%
! GGGGTGACAATCCTTCTTTT+AGG + chr7_2:80229957-80229976 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr7_2:80230707-80230726 None:intergenic 45.0%
TAACGGCGGCTATTATCAAG+TGG - chr7_2:80230741-80230760 Msa1080650:intron 45.0%
TTGACCGGTGCAAAGTTTGA+TGG + chr7_2:80230888-80230907 None:intergenic 45.0%
GCCTTGATGGAGAGAAAGTA+TGG + chr7_2:80231080-80231099 None:intergenic 45.0%
TAGTACGCACCGTTCAATTG+TGG + chr7_2:80231243-80231262 None:intergenic 45.0%
CAATTGAACGGTGCGTACTA+CGG - chr7_2:80231243-80231262 Msa1080650:intron 45.0%
AACAACAACTTCTGCTTCGG+TGG + chr7_2:80231308-80231327 None:intergenic 45.0%
GCTGTCTCTTCAGTTTCTTC+TGG - chr7_2:80231328-80231347 Msa1080650:intron 45.0%
ATCGCACTCATAGTTCTTGC+TGG - chr7_2:80231360-80231379 Msa1080650:intron 45.0%
GATAGAAGATAAGGACTGCG+AGG + chr7_2:80231386-80231405 None:intergenic 45.0%
CGTCGACATAGAACTTGAAG+GGG + chr7_2:80231425-80231444 None:intergenic 45.0%
GGTTGCTGCTCTTCTTGTAT+TGG + chr7_2:80231632-80231651 None:intergenic 45.0%
CTGAGAAAACAGCACTCATG+GGG + chr7_2:80231653-80231672 None:intergenic 45.0%
CCTGAGAAAACAGCACTCAT+GGG + chr7_2:80231654-80231673 None:intergenic 45.0%
TCCTGAGAAAACAGCACTCA+TGG + chr7_2:80231655-80231674 None:intergenic 45.0%
TCAGGATTAGGTTCAGACTC+GGG - chr7_2:80231766-80231785 Msa1080650:CDS 45.0%
AGACTCGGGGATTTGATATC+TGG - chr7_2:80231780-80231799 Msa1080650:CDS 45.0%
GAACTCAACATCGCACTTGG+TGG + chr7_2:80229414-80229433 None:intergenic 50.0%
TAACATCGATGCTAGTGGGG+CGG + chr7_2:80229978-80229997 None:intergenic 50.0%
TGGGACAAAGGAATTGACGG+AGG - chr7_2:80230318-80230337 Msa1080650:intron 50.0%
GGGACAAAGGAATTGACGGA+GGG - chr7_2:80230319-80230338 Msa1080650:intron 50.0%
ACATAGAACTTGAAGGGGCG+GGG + chr7_2:80231420-80231439 None:intergenic 50.0%
GACATAGAACTTGAAGGGGC+GGG + chr7_2:80231421-80231440 None:intergenic 50.0%
CGACATAGAACTTGAAGGGG+CGG + chr7_2:80231422-80231441 None:intergenic 50.0%
AGGCACGAGCATTCTACGAA+GGG - chr7_2:80231559-80231578 Msa1080650:CDS 50.0%
!!! CCCATGAGTGCTGTTTTCTC+AGG - chr7_2:80231651-80231670 Msa1080650:intron 50.0%
CAGGATTAGGTTCAGACTCG+GGG - chr7_2:80231767-80231786 Msa1080650:CDS 50.0%
GCGAGGTCGCATTTGACCTT+AGG + chr7_2:80229338-80229357 None:intergenic 55.0%
GAGTGCTCAAAGGAACTGCG+AGG + chr7_2:80229355-80229374 None:intergenic 55.0%
AACATCGATGCTAGTGGGGC+GGG + chr7_2:80229977-80229996 None:intergenic 55.0%
CTGGTCCGAACCAACTACGA+AGG + chr7_2:80230837-80230856 None:intergenic 55.0%
!! CTTCGTAGTTGGTTCGGACC+AGG - chr7_2:80230835-80230854 Msa1080650:intron 55.0%
!! TAGTTGGTTCGGACCAGGCT+GGG - chr7_2:80230840-80230859 Msa1080650:intron 55.0%
ACTGAGTTTCGTTCCCAGCC+TGG + chr7_2:80230856-80230875 None:intergenic 55.0%
!! TTGTGCTGGTGGTGGAATGG+CGG + chr7_2:80231271-80231290 None:intergenic 55.0%
!! AGGTTGTGCTGGTGGTGGAA+TGG + chr7_2:80231274-80231293 None:intergenic 55.0%
TTCTGCTTCGGTGGTTGCGA+GGG + chr7_2:80231299-80231318 None:intergenic 55.0%
GAGGCACGAGCATTCTACGA+AGG - chr7_2:80231558-80231577 Msa1080650:CDS 55.0%
GAGCATTCTACGAAGGGTCG+AGG - chr7_2:80231565-80231584 Msa1080650:CDS 55.0%
ACATCGATGCTAGTGGGGCG+GGG + chr7_2:80229976-80229995 None:intergenic 60.0%
!! GTAGTTGGTTCGGACCAGGC+TGG - chr7_2:80230839-80230858 Msa1080650:intron 60.0%
!! TGTGCTGGTGGTGGAATGGC+GGG + chr7_2:80231270-80231289 None:intergenic 60.0%
CTTCTGCTTCGGTGGTTGCG+AGG + chr7_2:80231300-80231319 None:intergenic 60.0%
!! GTGCTGGTGGTGGAATGGCG+GGG + chr7_2:80231269-80231288 None:intergenic 65.0%
TTGCGAGGGCGAGGTTGTGC+TGG + chr7_2:80231285-80231304 None:intergenic 65.0%
! GGGCGAGGTTGTGCTGGTGG+TGG + chr7_2:80231279-80231298 None:intergenic 70.0%
CGAGGGCGAGGTTGTGCTGG+TGG + chr7_2:80231282-80231301 None:intergenic 70.0%
CTTCGGTGGTTGCGAGGGCG+AGG + chr7_2:80231294-80231313 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 80229017 80231914 80229017 ID=Msa1080650;Name=Msa1080650
chr7_2 mRNA 80229017 80231914 80229017 ID=Msa1080650-mRNA-1;Parent=Msa1080650;Name=Msa1080650-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0|0|3|0|357
chr7_2 exon 80231672 80231914 80231672 ID=Msa1080650-mRNA-1:exon:20311;Parent=Msa1080650-mRNA-1
chr7_2 exon 80231514 80231650 80231514 ID=Msa1080650-mRNA-1:exon:20310;Parent=Msa1080650-mRNA-1
chr7_2 exon 80229017 80229710 80229017 ID=Msa1080650-mRNA-1:exon:20309;Parent=Msa1080650-mRNA-1
chr7_2 CDS 80231672 80231914 80231672 ID=Msa1080650-mRNA-1:cds;Parent=Msa1080650-mRNA-1
chr7_2 CDS 80231514 80231650 80231514 ID=Msa1080650-mRNA-1:cds;Parent=Msa1080650-mRNA-1
chr7_2 CDS 80229017 80229710 80229017 ID=Msa1080650-mRNA-1:cds;Parent=Msa1080650-mRNA-1
Gene Sequence

>Msa1080650

ATGGTGCTCAACTTCACATCCCACAACCCTAACAAAAAACTCGGTATCTATTACGACAAAGTTGAAGCTCAAGCATTCTATGAAGGGTCGAGGTTTGCTAACGTAGATGTTATCACACACATGAACTCATTTCGCCAAGACAAGAAGAATAGCACTCCTATGAGCGGTGTTTTTTCTGGTCAAAAACTATTGATGCTCGACAATGATCAAGTCTCTGAGTTCAACAAAGATAAAAATGTTGGACTCTATTTTAGGATTAGGTTCAAACTTGGAGACTCCATATCCGGAAAGCTCAAACCTAAGGTCAAATGCGACCTCGCAGTTCCTTTGAGCACTCGTAATGCAACTGATTTTACCTTCATTCGACTTATACCCACCAACATGGCTGATAACAAGCAACCACAATTGAACGGTGCGTACTACGGCCCCGCCATTCCACCACCAGCACAACCTCGCCCTCGCAACCACCGAAGCAGAAGTTGTTGTTGCTGTCTCTTCAGTTTCTTCTGGAAGCTTTTAATCGCACTCATAGTTCTTGCTGGCCTCGCAGTCCTTATCTTCTATCTCGTTGTACAACCCCGCCCCTTCAAGTTCTATGTCGACGAAGTCAATCTAACGAAATTCGACTACAGCAACAATACACTAAACTACAACATGGTGCTCAACTTCACAGCACGCAATCCAAACAAAAAACTCAACATCTATTATGATAAAGTGGAGGCACGAGCATTCTACGAAGGGTCGAGGTTTGCCAATGTTGATGTGATCACACACATGAACTCATTTCGCCAATACAAGAAGAGCAGCAACCCCATGAGTGCTGTTTTCTCAGGACAACATGTTTTGGTGCTCAACAACGATCAAGTCTCTGAGTTCAACAAAGACAAGAGTGATAAAGTTTATGATATCTATGTGAGGCTTTACTTCAGGATTAGGTTCAGACTCGGGGATTTGATATCTGGTGATTACAAGCCTAAGGTGAAATGTGACCTTAAAGTTCCTTTGAGTTCTAAAAATACCAATGCAACATCCTTTGAATTCACTAGGACCAAGTGTGATGTTGATTTCTACTAA

Protein sequence

>Msa1080650

MVLNFTSHNPNKKLGIYYDKVEAQAFYEGSRFANVDVITHMNSFRQDKKNSTPMSGVFSGQKLLMLDNDQVSEFNKDKNVGLYFRIRFKLGDSISGKLKPKVKCDLAVPLSTRNATDFTFIRLIPTNMADNKQPQLNGAYYGPAIPPPAQPRPRNHRSRSCCCCLFSFFWKLLIALIVLAGLAVLIFYLVVQPRPFKFYVDEVNLTKFDYSNNTLNYNMVLNFTARNPNKKLNIYYDKVEARAFYEGSRFANVDVITHMNSFRQYKKSSNPMSAVFSGQHVLVLNNDQVSEFNKDKSDKVYDIYVRLYFRIRFRLGDLISGDYKPKVKCDLKVPLSSKNTNATSFEFTRTKCDVDFY*