Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1080650 | XP_013450194.1 | 72.093 | 129 | 28 | 2 | 1 | 122 | 92 | 219 | 8.10e-51 | 179 |
Msa1080650 | XP_013450194.1 | 93.913 | 230 | 11 | 1 | 128 | 357 | 1 | 227 | 2.29e-155 | 445 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1080650 | sp|Q9SJ52|NHL10_ARATH | 43.478 | 230 | 119 | 6 | 132 | 356 | 4 | 227 | 5.44e-59 | 193 |
Msa1080650 | sp|Q9SJ52|NHL10_ARATH | 38.983 | 118 | 60 | 3 | 1 | 110 | 93 | 206 | 6.35e-20 | 90.5 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1080650 | A0A072U3C0 | 72.093 | 129 | 28 | 2 | 1 | 122 | 92 | 219 | 3.87e-51 | 179 |
Msa1080650 | A0A072U3C0 | 93.913 | 230 | 11 | 1 | 128 | 357 | 1 | 227 | 1.09e-155 | 445 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0026420 | Msa1080650 | 0.801555 | 8.521598e-49 | -8.615850e-47 |
Msa0035790 | Msa1080650 | 0.835478 | 1.638996e-56 | -8.615850e-47 |
Msa0051480 | Msa1080650 | 0.831852 | 1.319397e-55 | -8.615850e-47 |
Msa0051620 | Msa1080650 | 0.808825 | 2.560887e-50 | -8.615850e-47 |
Msa0051730 | Msa1080650 | 0.811122 | 8.199246e-51 | -8.615850e-47 |
Msa0076640 | Msa1080650 | 0.806890 | 6.603223e-50 | -8.615850e-47 |
Msa0083890 | Msa1080650 | 0.825021 | 5.881810e-54 | -8.615850e-47 |
Msa0146090 | Msa1080650 | 0.802968 | 4.361024e-49 | -8.615850e-47 |
Msa0146200 | Msa1080650 | 0.840345 | 9.196213e-58 | -8.615850e-47 |
Msa0147790 | Msa1080650 | 0.802792 | 4.741417e-49 | -8.615850e-47 |
Msa0162680 | Msa1080650 | 0.827141 | 1.843185e-54 | -8.615850e-47 |
Msa0207260 | Msa1080650 | 0.809449 | 1.881664e-50 | -8.615850e-47 |
Msa0224210 | Msa1080650 | 0.807556 | 4.771605e-50 | -8.615850e-47 |
Msa0225200 | Msa1080650 | 0.816389 | 5.670312e-52 | -8.615850e-47 |
Msa0385320 | Msa1080650 | 0.826585 | 2.501956e-54 | -8.615850e-47 |
Msa0390790 | Msa1080650 | 0.807357 | 5.259023e-50 | -8.615850e-47 |
Msa0416830 | Msa1080650 | 0.806661 | 7.381090e-50 | -8.615850e-47 |
Msa0438070 | Msa1080650 | 0.831059 | 2.068733e-55 | -8.615850e-47 |
Msa0468450 | Msa1080650 | 0.812649 | 3.812489e-51 | -8.615850e-47 |
Msa0481740 | Msa1080650 | 0.994787 | 3.349414e-210 | -8.615850e-47 |
Msa0481770 | Msa1080650 | 0.927430 | 1.188221e-91 | -8.615850e-47 |
Msa0982110 | Msa1080650 | 0.822016 | 2.967710e-53 | -8.615850e-47 |
Msa1025750 | Msa1080650 | 0.807218 | 5.626679e-50 | -8.615850e-47 |
Msa1080650 | Msa1126440 | 0.995657 | 1.640685e-218 | -8.615850e-47 |
Msa1080650 | Msa1183750 | 0.829599 | 4.703336e-55 | -8.615850e-47 |
Msa1080650 | Msa1215000 | 0.833927 | 4.025954e-56 | -8.615850e-47 |
Msa1080650 | Msa1300930 | 0.835132 | 2.004694e-56 | -8.615850e-47 |
Msa1080650 | Msa1309050 | 0.827697 | 1.355441e-54 | -8.615850e-47 |
Msa1080650 | Msa1331950 | 0.876222 | 1.657857e-68 | -8.615850e-47 |
Msa1080650 | Msa1338580 | 0.864123 | 1.524408e-64 | -8.615850e-47 |
Msa1080650 | Msa1344220 | 0.823607 | 1.264655e-53 | -8.615850e-47 |
Msa1080650 | Msa1344330 | 0.820820 | 5.603194e-53 | -8.615850e-47 |
Msa1080650 | Msa1346010 | 0.803478 | 3.419875e-49 | -8.615850e-47 |
Msa1080650 | Msa1349830 | 0.828827 | 7.239420e-55 | -8.615850e-47 |
Msa1080650 | Msa1361710 | 0.813250 | 2.814586e-51 | -8.615850e-47 |
Msa1080650 | Msa1377050 | 0.829342 | 5.430497e-55 | -8.615850e-47 |
Msa1080650 | Msa1383790 | 0.809887 | 1.514812e-50 | -8.615850e-47 |
Msa1080650 | Msa1396160 | 0.834577 | 2.766276e-56 | -8.615850e-47 |
Msa1080650 | Msa1401110 | 0.812800 | 3.532473e-51 | -8.615850e-47 |
Msa1080650 | Msa1427000 | 0.813343 | 2.685329e-51 | -8.615850e-47 |
Msa1080650 | Msa1432180 | 0.874935 | 4.577587e-68 | -8.615850e-47 |
Msa1080650 | Msa1438160 | 0.801724 | 7.867805e-49 | -8.615850e-47 |
Msa1080650 | Msa1453600 | 0.914725 | 1.368476e-84 | -8.615850e-47 |
Msa0246140 | Msa1080650 | 0.800328 | 1.517246e-48 | -8.615850e-47 |
Msa0253120 | Msa1080650 | 0.867626 | 1.190928e-65 | -8.615850e-47 |
Msa0262360 | Msa1080650 | 0.827591 | 1.437531e-54 | -8.615850e-47 |
Msa0267900 | Msa1080650 | 0.803598 | 3.229982e-49 | -8.615850e-47 |
Msa0291900 | Msa1080650 | 0.860582 | 1.867788e-63 | -8.615850e-47 |
Msa0291920 | Msa1080650 | 0.850473 | 1.659912e-60 | -8.615850e-47 |
Msa0300140 | Msa1080650 | 0.823884 | 1.088926e-53 | -8.615850e-47 |
Msa0329880 | Msa1080650 | 0.853880 | 1.783431e-61 | -8.615850e-47 |
Msa0332360 | Msa1080650 | 0.816400 | 5.638937e-52 | -8.615850e-47 |
Msa0523080 | Msa1080650 | 0.812971 | 3.241542e-51 | -8.615850e-47 |
Msa0568110 | Msa1080650 | 0.805433 | 1.337882e-49 | -8.615850e-47 |
Msa0570460 | Msa1080650 | 0.838003 | 3.723144e-57 | -8.615850e-47 |
Msa0870120 | Msa1080650 | 0.817384 | 3.391103e-52 | -8.615850e-47 |
Msa0935830 | Msa1080650 | 0.831519 | 1.593906e-55 | -8.615850e-47 |
Msa0973000 | Msa1080650 | 0.835847 | 1.321959e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1080650 | MtrunA17_Chr7g0267281 | 93.913 | 230 | 11 | 1 | 128 | 357 | 1 | 227 | 2.11e-159 | 445 |
Msa1080650 | MtrunA17_Chr7g0267281 | 72.093 | 129 | 28 | 2 | 1 | 122 | 92 | 219 | 7.45e-55 | 179 |
Msa1080650 | MtrunA17_Chr7g0267231 | 78.261 | 230 | 47 | 1 | 128 | 357 | 1 | 227 | 1.24e-119 | 345 |
Msa1080650 | MtrunA17_Chr7g0267231 | 69.925 | 133 | 29 | 2 | 1 | 126 | 92 | 220 | 1.04e-55 | 181 |
Msa1080650 | MtrunA17_Chr7g0267291 | 72.936 | 218 | 56 | 2 | 133 | 349 | 2 | 217 | 1.89e-112 | 330 |
Msa1080650 | MtrunA17_Chr7g0267291 | 89.474 | 133 | 7 | 1 | 1 | 126 | 89 | 221 | 5.78e-78 | 241 |
Msa1080650 | MtrunA17_Chr7g0267301 | 70.996 | 231 | 60 | 5 | 131 | 356 | 3 | 231 | 1.41e-106 | 311 |
Msa1080650 | MtrunA17_Chr7g0267301 | 77.273 | 132 | 23 | 1 | 1 | 125 | 93 | 224 | 1.54e-64 | 204 |
Msa1080650 | MtrunA17_Chr1g0177521 | 47.418 | 213 | 107 | 2 | 146 | 356 | 8 | 217 | 7.64e-50 | 166 |
Msa1080650 | MtrunA17_Chr1g0177521 | 48.760 | 121 | 55 | 1 | 2 | 115 | 81 | 201 | 5.09e-29 | 111 |
Msa1080650 | MtrunA17_Chr4g0067041 | 37.398 | 246 | 128 | 7 | 128 | 355 | 1 | 238 | 1.26e-47 | 161 |
Msa1080650 | MtrunA17_Chr4g0067041 | 35.484 | 124 | 69 | 2 | 1 | 117 | 105 | 224 | 1.50e-18 | 84.0 |
Msa1080650 | MtrunA17_Chr7g0267181 | 43.043 | 230 | 122 | 5 | 131 | 355 | 2 | 227 | 6.22e-46 | 156 |
Msa1080650 | MtrunA17_Chr7g0267181 | 42.478 | 113 | 54 | 3 | 5 | 110 | 99 | 207 | 1.13e-20 | 89.4 |
Msa1080650 | MtrunA17_Chr1g0177471 | 40.562 | 249 | 121 | 6 | 128 | 356 | 1 | 242 | 9.70e-44 | 151 |
Msa1080650 | MtrunA17_Chr1g0177471 | 39.837 | 123 | 63 | 2 | 1 | 116 | 108 | 226 | 2.08e-21 | 92.0 |
Msa1080650 | MtrunA17_Chr1g0177531 | 49.194 | 124 | 59 | 3 | 159 | 282 | 11 | 130 | 1.65e-25 | 99.8 |
Msa1080650 | MtrunA17_Chr6g0478671 | 32.258 | 186 | 108 | 7 | 155 | 335 | 5 | 177 | 6.71e-22 | 92.4 |
Msa1080650 | MtrunA17_Chr6g0479071 | 30.769 | 182 | 113 | 8 | 163 | 335 | 2 | 179 | 8.19e-18 | 81.3 |
Msa1080650 | MtrunA17_Chr6g0478661 | 32.432 | 185 | 103 | 8 | 158 | 335 | 5 | 174 | 9.63e-18 | 80.9 |
Msa1080650 | MtrunA17_Chr6g0479081 | 31.319 | 182 | 112 | 8 | 163 | 335 | 2 | 179 | 7.07e-17 | 78.6 |
Msa1080650 | MtrunA17_Chr2g0280851 | 29.775 | 178 | 112 | 6 | 181 | 356 | 36 | 202 | 7.62e-15 | 72.4 |
Msa1080650 | MtrunA17_Chr5g0440571 | 26.047 | 215 | 142 | 6 | 145 | 348 | 41 | 249 | 4.07e-14 | 71.6 |
Msa1080650 | MtrunA17_Chr1g0206161 | 22.845 | 232 | 143 | 7 | 143 | 356 | 17 | 230 | 3.62e-13 | 68.2 |
Msa1080650 | MtrunA17_Chr7g0267371 | 29.493 | 217 | 125 | 10 | 148 | 354 | 4 | 202 | 1.01e-12 | 66.6 |
Msa1080650 | MtrunA17_Chr7g0267361 | 29.442 | 197 | 117 | 5 | 159 | 347 | 67 | 249 | 7.06e-12 | 65.1 |
Msa1080650 | MtrunA17_Chr5g0433201 | 33.735 | 166 | 95 | 6 | 123 | 279 | 29 | 188 | 3.76e-11 | 62.8 |
Msa1080650 | MtrunA17_Chr7g0267321 | 23.308 | 266 | 178 | 7 | 85 | 329 | 69 | 329 | 9.59e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1080650 | AT2G35980.1 | 43.478 | 230 | 119 | 6 | 132 | 356 | 4 | 227 | 5.53e-60 | 193 |
Msa1080650 | AT2G35980.1 | 38.983 | 118 | 60 | 3 | 1 | 110 | 93 | 206 | 6.45e-21 | 90.5 |
Msa1080650 | AT3G11650.1 | 37.398 | 246 | 125 | 6 | 131 | 356 | 3 | 239 | 1.02e-50 | 169 |
Msa1080650 | AT3G11650.1 | 36.885 | 122 | 65 | 3 | 3 | 116 | 108 | 225 | 3.92e-17 | 80.1 |
Msa1080650 | AT5G06320.1 | 38.589 | 241 | 126 | 5 | 128 | 356 | 1 | 231 | 4.79e-49 | 165 |
Msa1080650 | AT5G06320.1 | 37.600 | 125 | 68 | 2 | 3 | 120 | 101 | 222 | 1.15e-22 | 95.5 |
Msa1080650 | AT2G35460.1 | 36.820 | 239 | 128 | 6 | 136 | 356 | 5 | 238 | 1.12e-45 | 156 |
Msa1080650 | AT2G35460.1 | 38.525 | 122 | 64 | 2 | 3 | 117 | 108 | 225 | 6.38e-21 | 90.9 |
Msa1080650 | AT1G32270.2 | 33.548 | 155 | 98 | 2 | 190 | 343 | 1 | 151 | 9.72e-19 | 86.7 |
Msa1080650 | AT1G32270.1 | 33.333 | 156 | 99 | 2 | 190 | 344 | 1 | 152 | 2.65e-18 | 85.9 |
Msa1080650 | AT3G11660.1 | 27.551 | 196 | 127 | 6 | 168 | 354 | 18 | 207 | 2.10e-15 | 74.7 |
Msa1080650 | AT4G05220.1 | 23.590 | 195 | 137 | 4 | 147 | 333 | 16 | 206 | 2.30e-15 | 75.1 |
Msa1080650 | AT5G53730.1 | 24.309 | 181 | 128 | 4 | 181 | 356 | 37 | 213 | 9.02e-12 | 64.3 |
Find 66 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACCTTAGGTTTGAGCTTTC+CGG | 0.214081 | 7_2:+80231588 | None:intergenic |
TAGAACTCAAAGGAACTTTA+AGG | 0.223136 | 7_2:+80229079 | None:intergenic |
GCTGTCTCTTCAGTTTCTTC+TGG | 0.267585 | 7_2:-80229581 | Msa1080650:CDS |
AGGTTTGAGCTTTCCGGATA+TGG | 0.277292 | 7_2:+80231594 | None:intergenic |
TGAGGCTTTACTTCAGGATT+AGG | 0.300660 | 7_2:-80229155 | Msa1080650:CDS |
TGTGCTGGTGGTGGAATGGC+GGG | 0.331387 | 7_2:+80229642 | None:intergenic |
TCTATGTGAGGCTTTACTTC+AGG | 0.355824 | 7_2:-80229161 | Msa1080650:CDS |
TTTCTCAGGACAACATGTTT+TGG | 0.356714 | 7_2:-80229244 | Msa1080650:CDS |
AGACTCGGGGATTTGATATC+TGG | 0.358540 | 7_2:-80229129 | Msa1080650:CDS |
GGTTGCTGCTCTTCTTGTAT+TGG | 0.359850 | 7_2:+80229280 | None:intergenic |
ATCGCACTCATAGTTCTTGC+TGG | 0.377894 | 7_2:-80229549 | Msa1080650:CDS |
GCGAGGTCGCATTTGACCTT+AGG | 0.395951 | 7_2:+80231574 | None:intergenic |
TTGCGAGGGCGAGGTTGTGC+TGG | 0.439367 | 7_2:+80229627 | None:intergenic |
TTCTGCTTCGGTGGTTGCGA+GGG | 0.450941 | 7_2:+80229613 | None:intergenic |
TCCTGAGAAAACAGCACTCA+TGG | 0.453273 | 7_2:+80229257 | None:intergenic |
GGGCGAGGTTGTGCTGGTGG+TGG | 0.461649 | 7_2:+80229633 | None:intergenic |
GAGTGCTATTCTTCTTGTCT+TGG | 0.462562 | 7_2:+80231758 | None:intergenic |
AGGTTGTGCTGGTGGTGGAA+TGG | 0.471755 | 7_2:+80229638 | None:intergenic |
CTTCTGCTTCGGTGGTTGCG+AGG | 0.479014 | 7_2:+80229612 | None:intergenic |
AGCAACAACAACTTCTGCTT+CGG | 0.479078 | 7_2:+80229601 | None:intergenic |
TTTAGGATTAGGTTCAAACT+TGG | 0.485508 | 7_2:-80231622 | Msa1080650:CDS |
CTTCGGTGGTTGCGAGGGCG+AGG | 0.496928 | 7_2:+80229618 | None:intergenic |
TAGTACGCACCGTTCAATTG+TGG | 0.499335 | 7_2:+80229669 | None:intergenic |
CAATTGAACGGTGCGTACTA+CGG | 0.499960 | 7_2:-80229666 | Msa1080650:CDS |
AAACTTGGAGACTCCATATC+CGG | 0.505174 | 7_2:-80231607 | Msa1080650:CDS |
TTGTGCTGGTGGTGGAATGG+CGG | 0.506260 | 7_2:+80229641 | None:intergenic |
TTAAGGTCACATTTCACCTT+AGG | 0.511449 | 7_2:+80229096 | None:intergenic |
AACAACAACTTCTGCTTCGG+TGG | 0.516162 | 7_2:+80229604 | None:intergenic |
TCAGGATTAGGTTCAGACTC+GGG | 0.521074 | 7_2:-80229143 | Msa1080650:CDS |
CAACATCTATTATGATAAAG+TGG | 0.524570 | 7_2:-80229373 | Msa1080650:CDS |
GAAGCTCAAGCATTCTATGA+AGG | 0.529600 | 7_2:-80231829 | Msa1080650:CDS |
TTCGTCGACATAGAACTTGA+AGG | 0.533993 | 7_2:+80229485 | None:intergenic |
CGAGGGCGAGGTTGTGCTGG+TGG | 0.535016 | 7_2:+80229630 | None:intergenic |
GACATAGAACTTGAAGGGGC+GGG | 0.537286 | 7_2:+80229491 | None:intergenic |
GAATTCAAAGGATGTTGCAT+TGG | 0.540349 | 7_2:+80229050 | None:intergenic |
CCTGAGAAAACAGCACTCAT+GGG | 0.540981 | 7_2:+80229258 | None:intergenic |
CAACATCCTTTGAATTCACT+AGG | 0.547733 | 7_2:-80229044 | Msa1080650:CDS |
TTCAGGATTAGGTTCAGACT+CGG | 0.548093 | 7_2:-80229144 | Msa1080650:CDS |
ATCTGGTGATTACAAGCCTA+AGG | 0.550508 | 7_2:-80229112 | Msa1080650:CDS |
TCGTCGACATAGAACTTGAA+GGG | 0.552525 | 7_2:+80229486 | None:intergenic |
GAGCATTCTACGAAGGGTCG+AGG | 0.554221 | 7_2:-80229344 | Msa1080650:CDS |
ATCCGGAAAGCTCAAACCTA+AGG | 0.555906 | 7_2:-80231590 | Msa1080650:CDS |
GGTGGGTATAAGTCGAATGA+AGG | 0.561749 | 7_2:+80231516 | None:intergenic |
GTACAACGAGATAGAAGATA+AGG | 0.563903 | 7_2:+80229517 | None:intergenic |
AAGCATTCTATGAAGGGTCG+AGG | 0.566567 | 7_2:-80231822 | Msa1080650:CDS |
ACATAGAACTTGAAGGGGCG+GGG | 0.572104 | 7_2:+80229492 | None:intergenic |
AACTCAACATCGCACTTGGT+GGG | 0.572755 | 7_2:+80231499 | None:intergenic |
CAGGATTAGGTTCAGACTCG+GGG | 0.604096 | 7_2:-80229142 | Msa1080650:CDS |
AACAAGCAACCACAATTGAA+CGG | 0.610539 | 7_2:-80229678 | Msa1080650:CDS |
CAATACACTAAACTACAACA+TGG | 0.612954 | 7_2:-80229433 | Msa1080650:CDS |
AAGCTCAAGCATTCTATGAA+GGG | 0.614742 | 7_2:-80231828 | Msa1080650:CDS |
CTTGGTCCTAGTGAATTCAA+AGG | 0.619486 | 7_2:+80229038 | None:intergenic |
CGACATAGAACTTGAAGGGG+CGG | 0.619644 | 7_2:+80229490 | None:intergenic |
GTGCTGGTGGTGGAATGGCG+GGG | 0.625212 | 7_2:+80229643 | None:intergenic |
GTTGCATTACGAGTGCTCAA+AGG | 0.627594 | 7_2:+80231547 | None:intergenic |
CTGAGAAAACAGCACTCATG+GGG | 0.650128 | 7_2:+80229259 | None:intergenic |
CGTCGACATAGAACTTGAAG+GGG | 0.659465 | 7_2:+80229487 | None:intergenic |
GTAGAAATCAACATCACACT+TGG | 0.661589 | 7_2:+80229020 | None:intergenic |
GAGGCACGAGCATTCTACGA+AGG | 0.666387 | 7_2:-80229351 | Msa1080650:CDS |
AGGCACGAGCATTCTACGAA+GGG | 0.671696 | 7_2:-80229350 | Msa1080650:CDS |
AAGTTTATGATATCTATGTG+AGG | 0.684871 | 7_2:-80229173 | Msa1080650:CDS |
CATCTATTATGATAAAGTGG+AGG | 0.687150 | 7_2:-80229370 | Msa1080650:CDS |
AAGAATAGCACTCCTATGAG+CGG | 0.689932 | 7_2:-80231748 | Msa1080650:CDS |
GTGTGTGATCACATCAACAT+TGG | 0.703529 | 7_2:+80229317 | None:intergenic |
GATAGAAGATAAGGACTGCG+AGG | 0.714786 | 7_2:+80229526 | None:intergenic |
GAGTGCTCAAAGGAACTGCG+AGG | 0.755136 | 7_2:+80231557 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAAAAAGTAATATAAATAA+AGG | + | chr7_2:80229758-80229777 | None:intergenic | 10.0% |
!! | TTATAAATTTGTAAATAGAA+AGG | - | chr7_2:80230363-80230382 | Msa1080650:intron | 10.0% |
!! | AATTCAATAGTTAAATTAGA+TGG | - | chr7_2:80229861-80229880 | Msa1080650:intron | 15.0% |
!! | AAATTATCCTTATTAACTAT+TGG | + | chr7_2:80230622-80230641 | None:intergenic | 15.0% |
!! | AATAGTTAATAAGGATAATT+TGG | - | chr7_2:80230621-80230640 | Msa1080650:intron | 15.0% |
!! | TTAATCATATTTATAAAGCA+TGG | - | chr7_2:80231203-80231222 | Msa1080650:intron | 15.0% |
!! | TTCAACAAAGATAAAAATGT+TGG | - | chr7_2:80229236-80229255 | Msa1080650:CDS | 20.0% |
!! | TTGTATGTAATTCTGATAAT+TGG | - | chr7_2:80229500-80229519 | Msa1080650:CDS | 20.0% |
!!! | TCTAGTTGTTTTTGTTTTAA+TGG | - | chr7_2:80229596-80229615 | Msa1080650:CDS | 20.0% |
!!! | CTAGTTGTTTTTGTTTTAAT+GGG | - | chr7_2:80229597-80229616 | Msa1080650:CDS | 20.0% |
!! | ATACATTTATCAAACACAAT+TGG | + | chr7_2:80229794-80229813 | None:intergenic | 20.0% |
!! | TTAAATTAGATGGTTAAAGT+AGG | - | chr7_2:80229871-80229890 | Msa1080650:intron | 20.0% |
!!! | GATTTTTTTCCTTACAAATT+AGG | + | chr7_2:80230079-80230098 | None:intergenic | 20.0% |
!!! | TTTTCATTGACTATTGATTA+TGG | - | chr7_2:80230190-80230209 | Msa1080650:intron | 20.0% |
!!! | AAGGTTATTATTTATTTTGC+TGG | - | chr7_2:80230382-80230401 | Msa1080650:intron | 20.0% |
!!! | AGGTTATTATTTATTTTGCT+GGG | - | chr7_2:80230383-80230402 | Msa1080650:intron | 20.0% |
!! | AGAAAAAGTTATTATTGCAT+TGG | + | chr7_2:80230535-80230554 | None:intergenic | 20.0% |
!! | AAACTAACCAATAGTTAATA+AGG | - | chr7_2:80230612-80230631 | Msa1080650:intron | 20.0% |
!! | AATGATTAAAAGAAAGAGAA+TGG | + | chr7_2:80230655-80230674 | None:intergenic | 20.0% |
!! | ATTCAATTTCTACTTTGTTA+AGG | + | chr7_2:80230935-80230954 | None:intergenic | 20.0% |
!! | TTTATAGCAAATATTCAACA+CGG | - | chr7_2:80230960-80230979 | Msa1080650:intron | 20.0% |
!! | TGTATATATAGAAAGGAATA+GGG | + | chr7_2:80231026-80231045 | None:intergenic | 20.0% |
!!! | TTTCTTGTTTTTGTATAGAG+TGG | - | chr7_2:80229658-80229677 | Msa1080650:CDS | 25.0% |
!!! | TTCTTGTTTTTGTATAGAGT+GGG | - | chr7_2:80229659-80229678 | Msa1080650:CDS | 25.0% |
!! | TTTTTCCTTACAAATTAGGA+CGG | + | chr7_2:80230075-80230094 | None:intergenic | 25.0% |
!! | ACTATTGATTATGGAGAAAA+TGG | - | chr7_2:80230199-80230218 | Msa1080650:intron | 25.0% |
!!! | TGTCTTTTTTGCTTACATTT+TGG | - | chr7_2:80230298-80230317 | Msa1080650:intron | 25.0% |
!!! | GTCTTTTTTGCTTACATTTT+GGG | - | chr7_2:80230299-80230318 | Msa1080650:intron | 25.0% |
! | ATTTAATCTTGTCATCACAT+GGG | + | chr7_2:80230426-80230445 | None:intergenic | 25.0% |
! | ATGACAAGATTAAATGTCAA+AGG | - | chr7_2:80230431-80230450 | Msa1080650:intron | 25.0% |
! | TGTTAAGGAAGCTATATAAA+TGG | + | chr7_2:80230920-80230939 | None:intergenic | 25.0% |
! | GTATATATAGAAAGGAATAG+GGG | + | chr7_2:80231025-80231044 | None:intergenic | 25.0% |
! | GTGTATATATAGAAAGGAAT+AGG | + | chr7_2:80231027-80231046 | None:intergenic | 25.0% |
!!! | TAGATGTTGAGTTTTTTGTT+TGG | + | chr7_2:80231525-80231544 | None:intergenic | 25.0% |
! | CAACATCTATTATGATAAAG+TGG | - | chr7_2:80231536-80231555 | Msa1080650:CDS | 25.0% |
! | AAGTTTATGATATCTATGTG+AGG | - | chr7_2:80231736-80231755 | Msa1080650:CDS | 25.0% |
!!! | TTGGTATTTTTAGAACTCAA+AGG | + | chr7_2:80231843-80231862 | None:intergenic | 25.0% |
!!! | AGATACCGAGTTTTTTGTTA+GGG | + | chr7_2:80229046-80229065 | None:intergenic | 30.0% |
!!! | TAGATACCGAGTTTTTTGTT+AGG | + | chr7_2:80229047-80229066 | None:intergenic | 30.0% |
! | TCTATGTGAAGCTCTATTTT+AGG | - | chr7_2:80229270-80229289 | Msa1080650:CDS | 30.0% |
!!! | TGAAGCTCTATTTTAGGATT+AGG | - | chr7_2:80229276-80229295 | Msa1080650:CDS | 30.0% |
! | TTTAGGATTAGGTTCAAACT+TGG | - | chr7_2:80229287-80229306 | Msa1080650:CDS | 30.0% |
TAATTAACATCGATGCTAGT+GGG | + | chr7_2:80229982-80230001 | None:intergenic | 30.0% | |
TTAATTAACATCGATGCTAG+TGG | + | chr7_2:80229983-80230002 | None:intergenic | 30.0% | |
CATTTAATCTTGTCATCACA+TGG | + | chr7_2:80230427-80230446 | None:intergenic | 30.0% | |
!!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr7_2:80230703-80230722 | None:intergenic | 30.0% |
!! | AAACGACACTCATTTTGAAA+CGG | - | chr7_2:80230704-80230723 | Msa1080650:intron | 30.0% |
!!! | AAATGGTTGATGATTTTGAC+CGG | + | chr7_2:80230903-80230922 | None:intergenic | 30.0% |
!!! | ATAGGGGTTGGATTTTTTAT+GGG | + | chr7_2:80231009-80231028 | None:intergenic | 30.0% |
!!! | AATAGGGGTTGGATTTTTTA+TGG | + | chr7_2:80231010-80231029 | None:intergenic | 30.0% |
TGTGGTGTGTATATATAGAA+AGG | + | chr7_2:80231033-80231052 | None:intergenic | 30.0% | |
GTATAAAATTGATGCCTTGA+TGG | + | chr7_2:80231093-80231112 | None:intergenic | 30.0% | |
AATGAGAGCAAGATATACTA+TGG | + | chr7_2:80231185-80231204 | None:intergenic | 30.0% | |
CAATACACTAAACTACAACA+TGG | - | chr7_2:80231476-80231495 | Msa1080650:intron | 30.0% | |
CATCTATTATGATAAAGTGG+AGG | - | chr7_2:80231539-80231558 | Msa1080650:CDS | 30.0% | |
TAGAACTCAAAGGAACTTTA+AGG | + | chr7_2:80231833-80231852 | None:intergenic | 30.0% | |
!!! | GAGTTTTTTGTTAGGGTTGT+GGG | + | chr7_2:80229039-80229058 | None:intergenic | 35.0% |
CACAACCCTAACAAAAAACT+CGG | - | chr7_2:80229038-80229057 | Msa1080650:CDS | 35.0% | |
AAGCTCAAGCATTCTATGAA+GGG | - | chr7_2:80229081-80229100 | Msa1080650:CDS | 35.0% | |
AACAACTAGAGTACATTGCA+TGG | + | chr7_2:80229586-80229605 | None:intergenic | 35.0% | |
AATTAACATCGATGCTAGTG+GGG | + | chr7_2:80229981-80230000 | None:intergenic | 35.0% | |
!!! | TTGCTTACATTTTGGGACAA+AGG | - | chr7_2:80230306-80230325 | Msa1080650:intron | 35.0% |
!!! | TTTTGGGACAAAGGAATTGA+CGG | - | chr7_2:80230315-80230334 | Msa1080650:intron | 35.0% |
!! | AAGCGACACTCATTTTGAAA+CGG | + | chr7_2:80230469-80230488 | None:intergenic | 35.0% |
! | TGTGCAGAGTATTAATTGGA+GGG | + | chr7_2:80230569-80230588 | None:intergenic | 35.0% |
! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr7_2:80230573-80230592 | None:intergenic | 35.0% |
AAAAATTGTACCCACTCAAG+AGG | - | chr7_2:80230775-80230794 | Msa1080650:intron | 35.0% | |
AAAATTGTACCCACTCAAGA+GGG | - | chr7_2:80230776-80230795 | Msa1080650:intron | 35.0% | |
AAACAAATTCCCTCTTGAGT+GGG | + | chr7_2:80230788-80230807 | None:intergenic | 35.0% | |
!!! | GGATTTTTTATGGGATAACG+CGG | + | chr7_2:80231000-80231019 | None:intergenic | 35.0% |
ATATAGAAAGGAATAGGGGT+TGG | + | chr7_2:80231021-80231040 | None:intergenic | 35.0% | |
GTTGAAGAAAAGTTGTGTTG+TGG | + | chr7_2:80231119-80231138 | None:intergenic | 35.0% | |
AACAAGCAACCACAATTGAA+CGG | - | chr7_2:80231231-80231250 | Msa1080650:intron | 35.0% | |
GTACAACGAGATAGAAGATA+AGG | + | chr7_2:80231395-80231414 | None:intergenic | 35.0% | |
! | TTTCTCAGGACAACATGTTT+TGG | - | chr7_2:80231665-80231684 | Msa1080650:intron | 35.0% |
TTAAGGTCACATTTCACCTT+AGG | + | chr7_2:80231816-80231835 | None:intergenic | 35.0% | |
GAATTCAAAGGATGTTGCAT+TGG | + | chr7_2:80231862-80231881 | None:intergenic | 35.0% | |
CAACATCCTTTGAATTCACT+AGG | - | chr7_2:80231865-80231884 | Msa1080650:CDS | 35.0% | |
GTAGAAATCAACATCACACT+TGG | + | chr7_2:80231892-80231911 | None:intergenic | 35.0% | |
!!! | CGAGTTTTTTGTTAGGGTTG+TGG | + | chr7_2:80229040-80229059 | None:intergenic | 40.0% |
GAAGCTCAAGCATTCTATGA+AGG | - | chr7_2:80229080-80229099 | Msa1080650:CDS | 40.0% | |
! | GAGTGCTATTCTTCTTGTCT+TGG | + | chr7_2:80229154-80229173 | None:intergenic | 40.0% |
AAGAATAGCACTCCTATGAG+CGG | - | chr7_2:80229161-80229180 | Msa1080650:CDS | 40.0% | |
AAACTTGGAGACTCCATATC+CGG | - | chr7_2:80229302-80229321 | Msa1080650:CDS | 40.0% | |
TTAGAACTCAACATCGCACT+TGG | + | chr7_2:80229417-80229436 | None:intergenic | 40.0% | |
ACTAGAGTACATTGCATGGA+TGG | + | chr7_2:80229582-80229601 | None:intergenic | 40.0% | |
!!! | TCTTTTAGGGTCTCTCTAGT+TGG | + | chr7_2:80229943-80229962 | None:intergenic | 40.0% |
ACTAGAGAGACCCTAAAAGA+AGG | - | chr7_2:80229943-80229962 | Msa1080650:intron | 40.0% | |
! | GGGTGACAATCCTTCTTTTA+GGG | + | chr7_2:80229956-80229975 | None:intergenic | 40.0% |
! | TCCATCCGTCCTAATTTGTA+AGG | - | chr7_2:80230067-80230086 | Msa1080650:intron | 40.0% |
TCCTTACAAATTAGGACGGA+TGG | + | chr7_2:80230071-80230090 | None:intergenic | 40.0% | |
!!! | GACACTCATTTTGAAACGGA+GGG | + | chr7_2:80230708-80230727 | None:intergenic | 40.0% |
! | GTGTGCAGAGTATTAATTGG+AGG | + | chr7_2:80230570-80230589 | None:intergenic | 40.0% |
CGGAGCGAGTATAAGTATAA+CGG | - | chr7_2:80230724-80230743 | Msa1080650:intron | 40.0% | |
AGCGAGTATAAGTATAACGG+CGG | - | chr7_2:80230727-80230746 | Msa1080650:intron | 40.0% | |
GAAACAAATTCCCTCTTGAG+TGG | + | chr7_2:80230789-80230808 | None:intergenic | 40.0% | |
TGTTCAATCACCTTCGTAGT+TGG | - | chr7_2:80230824-80230843 | Msa1080650:intron | 40.0% | |
AATCACCTTCGTAGTTGGTT+CGG | - | chr7_2:80230829-80230848 | Msa1080650:intron | 40.0% | |
GCAAAGTTTGATGGAGATTG+TGG | + | chr7_2:80230879-80230898 | None:intergenic | 40.0% | |
ATCTCCATCAAACTTTGCAC+CGG | - | chr7_2:80230881-80230900 | Msa1080650:intron | 40.0% | |
GTGAGATAAGAAGCAAAGTG+TGG | + | chr7_2:80231051-80231070 | None:intergenic | 40.0% | |
ACCATACTTTCTCTCCATCA+AGG | - | chr7_2:80231076-80231095 | Msa1080650:intron | 40.0% | |
AGCAACAACAACTTCTGCTT+CGG | + | chr7_2:80231311-80231330 | None:intergenic | 40.0% | |
TCGTCGACATAGAACTTGAA+GGG | + | chr7_2:80231426-80231445 | None:intergenic | 40.0% | |
TTCGTCGACATAGAACTTGA+AGG | + | chr7_2:80231427-80231446 | None:intergenic | 40.0% | |
GTGTGTGATCACATCAACAT+TGG | + | chr7_2:80231595-80231614 | None:intergenic | 40.0% | |
TCTATGTGAGGCTTTACTTC+AGG | - | chr7_2:80231748-80231767 | Msa1080650:CDS | 40.0% | |
TGAGGCTTTACTTCAGGATT+AGG | - | chr7_2:80231754-80231773 | Msa1080650:CDS | 40.0% | |
TTCAGGATTAGGTTCAGACT+CGG | - | chr7_2:80231765-80231784 | Msa1080650:CDS | 40.0% | |
ATCTGGTGATTACAAGCCTA+AGG | - | chr7_2:80231797-80231816 | Msa1080650:CDS | 40.0% | |
CTTGGTCCTAGTGAATTCAA+AGG | + | chr7_2:80231874-80231893 | None:intergenic | 40.0% | |
AAGCATTCTATGAAGGGTCG+AGG | - | chr7_2:80229087-80229106 | Msa1080650:CDS | 45.0% | |
CCAGAAAAAACACCGCTCAT+AGG | + | chr7_2:80229176-80229195 | None:intergenic | 45.0% | |
!!! | CCTATGAGCGGTGTTTTTTC+TGG | - | chr7_2:80229173-80229192 | Msa1080650:CDS | 45.0% |
AGGTTTGAGCTTTCCGGATA+TGG | + | chr7_2:80229318-80229337 | None:intergenic | 45.0% | |
ATCCGGAAAGCTCAAACCTA+AGG | - | chr7_2:80229319-80229338 | Msa1080650:CDS | 45.0% | |
GACCTTAGGTTTGAGCTTTC+CGG | + | chr7_2:80229324-80229343 | None:intergenic | 45.0% | |
GTTGCATTACGAGTGCTCAA+AGG | + | chr7_2:80229365-80229384 | None:intergenic | 45.0% | |
GGTGGGTATAAGTCGAATGA+AGG | + | chr7_2:80229396-80229415 | None:intergenic | 45.0% | |
AACTCAACATCGCACTTGGT+GGG | + | chr7_2:80229413-80229432 | None:intergenic | 45.0% | |
! | GGGGTGACAATCCTTCTTTT+AGG | + | chr7_2:80229957-80229976 | None:intergenic | 45.0% |
!!! | CGACACTCATTTTGAAACGG+AGG | + | chr7_2:80230707-80230726 | None:intergenic | 45.0% |
TAACGGCGGCTATTATCAAG+TGG | - | chr7_2:80230741-80230760 | Msa1080650:intron | 45.0% | |
TTGACCGGTGCAAAGTTTGA+TGG | + | chr7_2:80230888-80230907 | None:intergenic | 45.0% | |
GCCTTGATGGAGAGAAAGTA+TGG | + | chr7_2:80231080-80231099 | None:intergenic | 45.0% | |
TAGTACGCACCGTTCAATTG+TGG | + | chr7_2:80231243-80231262 | None:intergenic | 45.0% | |
CAATTGAACGGTGCGTACTA+CGG | - | chr7_2:80231243-80231262 | Msa1080650:intron | 45.0% | |
AACAACAACTTCTGCTTCGG+TGG | + | chr7_2:80231308-80231327 | None:intergenic | 45.0% | |
GCTGTCTCTTCAGTTTCTTC+TGG | - | chr7_2:80231328-80231347 | Msa1080650:intron | 45.0% | |
ATCGCACTCATAGTTCTTGC+TGG | - | chr7_2:80231360-80231379 | Msa1080650:intron | 45.0% | |
GATAGAAGATAAGGACTGCG+AGG | + | chr7_2:80231386-80231405 | None:intergenic | 45.0% | |
CGTCGACATAGAACTTGAAG+GGG | + | chr7_2:80231425-80231444 | None:intergenic | 45.0% | |
GGTTGCTGCTCTTCTTGTAT+TGG | + | chr7_2:80231632-80231651 | None:intergenic | 45.0% | |
CTGAGAAAACAGCACTCATG+GGG | + | chr7_2:80231653-80231672 | None:intergenic | 45.0% | |
CCTGAGAAAACAGCACTCAT+GGG | + | chr7_2:80231654-80231673 | None:intergenic | 45.0% | |
TCCTGAGAAAACAGCACTCA+TGG | + | chr7_2:80231655-80231674 | None:intergenic | 45.0% | |
TCAGGATTAGGTTCAGACTC+GGG | - | chr7_2:80231766-80231785 | Msa1080650:CDS | 45.0% | |
AGACTCGGGGATTTGATATC+TGG | - | chr7_2:80231780-80231799 | Msa1080650:CDS | 45.0% | |
GAACTCAACATCGCACTTGG+TGG | + | chr7_2:80229414-80229433 | None:intergenic | 50.0% | |
TAACATCGATGCTAGTGGGG+CGG | + | chr7_2:80229978-80229997 | None:intergenic | 50.0% | |
TGGGACAAAGGAATTGACGG+AGG | - | chr7_2:80230318-80230337 | Msa1080650:intron | 50.0% | |
GGGACAAAGGAATTGACGGA+GGG | - | chr7_2:80230319-80230338 | Msa1080650:intron | 50.0% | |
ACATAGAACTTGAAGGGGCG+GGG | + | chr7_2:80231420-80231439 | None:intergenic | 50.0% | |
GACATAGAACTTGAAGGGGC+GGG | + | chr7_2:80231421-80231440 | None:intergenic | 50.0% | |
CGACATAGAACTTGAAGGGG+CGG | + | chr7_2:80231422-80231441 | None:intergenic | 50.0% | |
AGGCACGAGCATTCTACGAA+GGG | - | chr7_2:80231559-80231578 | Msa1080650:CDS | 50.0% | |
!!! | CCCATGAGTGCTGTTTTCTC+AGG | - | chr7_2:80231651-80231670 | Msa1080650:intron | 50.0% |
CAGGATTAGGTTCAGACTCG+GGG | - | chr7_2:80231767-80231786 | Msa1080650:CDS | 50.0% | |
GCGAGGTCGCATTTGACCTT+AGG | + | chr7_2:80229338-80229357 | None:intergenic | 55.0% | |
GAGTGCTCAAAGGAACTGCG+AGG | + | chr7_2:80229355-80229374 | None:intergenic | 55.0% | |
AACATCGATGCTAGTGGGGC+GGG | + | chr7_2:80229977-80229996 | None:intergenic | 55.0% | |
CTGGTCCGAACCAACTACGA+AGG | + | chr7_2:80230837-80230856 | None:intergenic | 55.0% | |
!! | CTTCGTAGTTGGTTCGGACC+AGG | - | chr7_2:80230835-80230854 | Msa1080650:intron | 55.0% |
!! | TAGTTGGTTCGGACCAGGCT+GGG | - | chr7_2:80230840-80230859 | Msa1080650:intron | 55.0% |
ACTGAGTTTCGTTCCCAGCC+TGG | + | chr7_2:80230856-80230875 | None:intergenic | 55.0% | |
!! | TTGTGCTGGTGGTGGAATGG+CGG | + | chr7_2:80231271-80231290 | None:intergenic | 55.0% |
!! | AGGTTGTGCTGGTGGTGGAA+TGG | + | chr7_2:80231274-80231293 | None:intergenic | 55.0% |
TTCTGCTTCGGTGGTTGCGA+GGG | + | chr7_2:80231299-80231318 | None:intergenic | 55.0% | |
GAGGCACGAGCATTCTACGA+AGG | - | chr7_2:80231558-80231577 | Msa1080650:CDS | 55.0% | |
GAGCATTCTACGAAGGGTCG+AGG | - | chr7_2:80231565-80231584 | Msa1080650:CDS | 55.0% | |
ACATCGATGCTAGTGGGGCG+GGG | + | chr7_2:80229976-80229995 | None:intergenic | 60.0% | |
!! | GTAGTTGGTTCGGACCAGGC+TGG | - | chr7_2:80230839-80230858 | Msa1080650:intron | 60.0% |
!! | TGTGCTGGTGGTGGAATGGC+GGG | + | chr7_2:80231270-80231289 | None:intergenic | 60.0% |
CTTCTGCTTCGGTGGTTGCG+AGG | + | chr7_2:80231300-80231319 | None:intergenic | 60.0% | |
!! | GTGCTGGTGGTGGAATGGCG+GGG | + | chr7_2:80231269-80231288 | None:intergenic | 65.0% |
TTGCGAGGGCGAGGTTGTGC+TGG | + | chr7_2:80231285-80231304 | None:intergenic | 65.0% | |
! | GGGCGAGGTTGTGCTGGTGG+TGG | + | chr7_2:80231279-80231298 | None:intergenic | 70.0% |
CGAGGGCGAGGTTGTGCTGG+TGG | + | chr7_2:80231282-80231301 | None:intergenic | 70.0% | |
CTTCGGTGGTTGCGAGGGCG+AGG | + | chr7_2:80231294-80231313 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 80229017 | 80231914 | 80229017 | ID=Msa1080650;Name=Msa1080650 |
chr7_2 | mRNA | 80229017 | 80231914 | 80229017 | ID=Msa1080650-mRNA-1;Parent=Msa1080650;Name=Msa1080650-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0|0|3|0|357 |
chr7_2 | exon | 80231672 | 80231914 | 80231672 | ID=Msa1080650-mRNA-1:exon:20311;Parent=Msa1080650-mRNA-1 |
chr7_2 | exon | 80231514 | 80231650 | 80231514 | ID=Msa1080650-mRNA-1:exon:20310;Parent=Msa1080650-mRNA-1 |
chr7_2 | exon | 80229017 | 80229710 | 80229017 | ID=Msa1080650-mRNA-1:exon:20309;Parent=Msa1080650-mRNA-1 |
chr7_2 | CDS | 80231672 | 80231914 | 80231672 | ID=Msa1080650-mRNA-1:cds;Parent=Msa1080650-mRNA-1 |
chr7_2 | CDS | 80231514 | 80231650 | 80231514 | ID=Msa1080650-mRNA-1:cds;Parent=Msa1080650-mRNA-1 |
chr7_2 | CDS | 80229017 | 80229710 | 80229017 | ID=Msa1080650-mRNA-1:cds;Parent=Msa1080650-mRNA-1 |
Gene Sequence |
Protein sequence |