AlfalfaGEDB | Msa1080650

M. sativa cultivar zhongmu-4 / Msa1080650

KEGG: -
GO: GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402
PFAM: PF03168.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080650	XP_013450194.1	72.093	129	28	2	1	122	92	219	8.10e-51	179
Msa1080650	XP_013450194.1	93.913	230	11	1	128	357	1	227	2.29e-155	445

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080650	sp\|Q9SJ52\|NHL10_ARATH	43.478	230	119	6	132	356	4	227	5.44e-59	193
Msa1080650	sp\|Q9SJ52\|NHL10_ARATH	38.983	118	60	3	1	110	93	206	6.35e-20	90.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080650	A0A072U3C0	72.093	129	28	2	1	122	92	219	3.87e-51	179
Msa1080650	A0A072U3C0	93.913	230	11	1	128	357	1	227	1.09e-155	445

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026420	Msa1080650	0.801555	8.521598e-49	-8.615850e-47
Msa0035790	Msa1080650	0.835478	1.638996e-56	-8.615850e-47
Msa0051480	Msa1080650	0.831852	1.319397e-55	-8.615850e-47
Msa0051620	Msa1080650	0.808825	2.560887e-50	-8.615850e-47
Msa0051730	Msa1080650	0.811122	8.199246e-51	-8.615850e-47
Msa0076640	Msa1080650	0.806890	6.603223e-50	-8.615850e-47
Msa0083890	Msa1080650	0.825021	5.881810e-54	-8.615850e-47
Msa0146090	Msa1080650	0.802968	4.361024e-49	-8.615850e-47
Msa0146200	Msa1080650	0.840345	9.196213e-58	-8.615850e-47
Msa0147790	Msa1080650	0.802792	4.741417e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080650	MtrunA17_Chr7g0267281	93.913	230	11	1	128	357	1	227	2.11e-159	445
Msa1080650	MtrunA17_Chr7g0267281	72.093	129	28	2	1	122	92	219	7.45e-55	179
Msa1080650	MtrunA17_Chr7g0267231	78.261	230	47	1	128	357	1	227	1.24e-119	345
Msa1080650	MtrunA17_Chr7g0267231	69.925	133	29	2	1	126	92	220	1.04e-55	181
Msa1080650	MtrunA17_Chr7g0267291	72.936	218	56	2	133	349	2	217	1.89e-112	330
Msa1080650	MtrunA17_Chr7g0267291	89.474	133	7	1	1	126	89	221	5.78e-78	241
Msa1080650	MtrunA17_Chr7g0267301	70.996	231	60	5	131	356	3	231	1.41e-106	311
Msa1080650	MtrunA17_Chr7g0267301	77.273	132	23	1	1	125	93	224	1.54e-64	204
Msa1080650	MtrunA17_Chr1g0177521	47.418	213	107	2	146	356	8	217	7.64e-50	166
Msa1080650	MtrunA17_Chr1g0177521	48.760	121	55	1	2	115	81	201	5.09e-29	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1080650	AT2G35980.1	43.478	230	119	6	132	356	4	227	5.53e-60	193
Msa1080650	AT2G35980.1	38.983	118	60	3	1	110	93	206	6.45e-21	90.5
Msa1080650	AT3G11650.1	37.398	246	125	6	131	356	3	239	1.02e-50	169
Msa1080650	AT3G11650.1	36.885	122	65	3	3	116	108	225	3.92e-17	80.1
Msa1080650	AT5G06320.1	38.589	241	126	5	128	356	1	231	4.79e-49	165
Msa1080650	AT5G06320.1	37.600	125	68	2	3	120	101	222	1.15e-22	95.5
Msa1080650	AT2G35460.1	36.820	239	128	6	136	356	5	238	1.12e-45	156
Msa1080650	AT2G35460.1	38.525	122	64	2	3	117	108	225	6.38e-21	90.9
Msa1080650	AT1G32270.2	33.548	155	98	2	190	343	1	151	9.72e-19	86.7
Msa1080650	AT1G32270.1	33.333	156	99	2	190	344	1	152	2.65e-18	85.9

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Find 66 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGGAGACTCCATATC+CGG	0.505174	7_2:-80231607	Msa1080650:CDS
AACAACAACTTCTGCTTCGG+TGG	0.516162	7_2:+80229604	None:intergenic
AACAAGCAACCACAATTGAA+CGG	0.610539	7_2:-80229678	Msa1080650:CDS
AACTCAACATCGCACTTGGT+GGG	0.572755	7_2:+80231499	None:intergenic
AAGAATAGCACTCCTATGAG+CGG	0.689932	7_2:-80231748	Msa1080650:CDS
AAGCATTCTATGAAGGGTCG+AGG	0.566567	7_2:-80231822	Msa1080650:CDS
AAGCTCAAGCATTCTATGAA+GGG	0.614742	7_2:-80231828	Msa1080650:CDS
AAGTTTATGATATCTATGTG+AGG	0.684871	7_2:-80229173	Msa1080650:CDS
ACATAGAACTTGAAGGGGCG+GGG	0.572104	7_2:+80229492	None:intergenic
AGACTCGGGGATTTGATATC+TGG	0.358540	7_2:-80229129	Msa1080650:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATTAACATCGATGCTAGT+GGG	+	chr7_2:80229982-80230001	None:intergenic	30.0%
TTAATTAACATCGATGCTAG+TGG	+	chr7_2:80229983-80230002	None:intergenic	30.0%
CATTTAATCTTGTCATCACA+TGG	+	chr7_2:80230427-80230446	None:intergenic	30.0%
TGTGGTGTGTATATATAGAA+AGG	+	chr7_2:80231033-80231052	None:intergenic	30.0%
GTATAAAATTGATGCCTTGA+TGG	+	chr7_2:80231093-80231112	None:intergenic	30.0%
AATGAGAGCAAGATATACTA+TGG	+	chr7_2:80231185-80231204	None:intergenic	30.0%
CAATACACTAAACTACAACA+TGG	-	chr7_2:80231476-80231495	Msa1080650:intron	30.0%
CATCTATTATGATAAAGTGG+AGG	-	chr7_2:80231539-80231558	Msa1080650:CDS	30.0%
TAGAACTCAAAGGAACTTTA+AGG	+	chr7_2:80231833-80231852	None:intergenic	30.0%
CACAACCCTAACAAAAAACT+CGG	-	chr7_2:80229038-80229057	Msa1080650:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	80229017	80231914	80229017	ID=Msa1080650;Name=Msa1080650
chr7_2	mRNA	80229017	80231914	80229017	ID=Msa1080650-mRNA-1;Parent=Msa1080650;Name=Msa1080650-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0\|0\|1\|0\|0\|3\|0\|357
chr7_2	exon	80231672	80231914	80231672	ID=Msa1080650-mRNA-1:exon:20311;Parent=Msa1080650-mRNA-1
chr7_2	exon	80231514	80231650	80231514	ID=Msa1080650-mRNA-1:exon:20310;Parent=Msa1080650-mRNA-1
chr7_2	exon	80229017	80229710	80229017	ID=Msa1080650-mRNA-1:exon:20309;Parent=Msa1080650-mRNA-1
chr7_2	CDS	80231672	80231914	80231672	ID=Msa1080650-mRNA-1:cds;Parent=Msa1080650-mRNA-1
chr7_2	CDS	80231514	80231650	80231514	ID=Msa1080650-mRNA-1:cds;Parent=Msa1080650-mRNA-1
chr7_2	CDS	80229017	80229710	80229017	ID=Msa1080650-mRNA-1:cds;Parent=Msa1080650-mRNA-1

Gene Sequence

>Msa1080650

ATGGTGCTCAACTTCACATCCCACAACCCTAACAAAAAACTCGGTATCTATTACGACAAAGTTGAAGCTCAAGCATTCTATGAAGGGTCGAGGTTTGCTAACGTAGATGTTATCACACACATGAACTCATTTCGCCAAGACAAGAAGAATAGCACTCCTATGAGCGGTGTTTTTTCTGGTCAAAAACTATTGATGCTCGACAATGATCAAGTCTCTGAGTTCAACAAAGATAAAAATGTTGGACTCTATTTTAGGATTAGGTTCAAACTTGGAGACTCCATATCCGGAAAGCTCAAACCTAAGGTCAAATGCGACCTCGCAGTTCCTTTGAGCACTCGTAATGCAACTGATTTTACCTTCATTCGACTTATACCCACCAACATGGCTGATAACAAGCAACCACAATTGAACGGTGCGTACTACGGCCCCGCCATTCCACCACCAGCACAACCTCGCCCTCGCAACCACCGAAGCAGAAGTTGTTGTTGCTGTCTCTTCAGTTTCTTCTGGAAGCTTTTAATCGCACTCATAGTTCTTGCTGGCCTCGCAGTCCTTATCTTCTATCTCGTTGTACAACCCCGCCCCTTCAAGTTCTATGTCGACGAAGTCAATCTAACGAAATTCGACTACAGCAACAATACACTAAACTACAACATGGTGCTCAACTTCACAGCACGCAATCCAAACAAAAAACTCAACATCTATTATGATAAAGTGGAGGCACGAGCATTCTACGAAGGGTCGAGGTTTGCCAATGTTGATGTGATCACACACATGAACTCATTTCGCCAATACAAGAAGAGCAGCAACCCCATGAGTGCTGTTTTCTCAGGACAACATGTTTTGGTGCTCAACAACGATCAAGTCTCTGAGTTCAACAAAGACAAGAGTGATAAAGTTTATGATATCTATGTGAGGCTTTACTTCAGGATTAGGTTCAGACTCGGGGATTTGATATCTGGTGATTACAAGCCTAAGGTGAAATGTGACCTTAAAGTTCCTTTGAGTTCTAAAAATACCAATGCAACATCCTTTGAATTCACTAGGACCAAGTGTGATGTTGATTTCTACTAA

Protein sequence

>Msa1080650

MVLNFTSHNPNKKLGIYYDKVEAQAFYEGSRFANVDVITHMNSFRQDKKNSTPMSGVFSGQKLLMLDNDQVSEFNKDKNVGLYFRIRFKLGDSISGKLKPKVKCDLAVPLSTRNATDFTFIRLIPTNMADNKQPQLNGAYYGPAIPPPAQPRPRNHRSRSCCCCLFSFFWKLLIALIVLAGLAVLIFYLVVQPRPFKFYVDEVNLTKFDYSNNTLNYNMVLNFTARNPNKKLNIYYDKVEARAFYEGSRFANVDVITHMNSFRQYKKSSNPMSAVFSGQHVLVLNNDQVSEFNKDKSDKVYDIYVRLYFRIRFRLGDLISGDYKPKVKCDLKVPLSSKNTNATSFEFTRTKCDVDFY*