Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481740 | XP_013450194.1 | 72.093 | 129 | 28 | 2 | 1 | 122 | 92 | 219 | 8.10e-51 | 179 |
| Msa0481740 | XP_013450194.1 | 93.913 | 230 | 11 | 1 | 128 | 357 | 1 | 227 | 2.29e-155 | 445 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481740 | sp|Q9SJ52|NHL10_ARATH | 43.478 | 230 | 119 | 6 | 132 | 356 | 4 | 227 | 5.44e-59 | 193 |
| Msa0481740 | sp|Q9SJ52|NHL10_ARATH | 38.983 | 118 | 60 | 3 | 1 | 110 | 93 | 206 | 6.35e-20 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481740 | A0A072U3C0 | 72.093 | 129 | 28 | 2 | 1 | 122 | 92 | 219 | 3.87e-51 | 179 |
| Msa0481740 | A0A072U3C0 | 93.913 | 230 | 11 | 1 | 128 | 357 | 1 | 227 | 1.09e-155 | 445 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035790 | Msa0481740 | 0.830827 | 2.358095e-55 | -8.615850e-47 |
| Msa0051480 | Msa0481740 | 0.832918 | 7.185622e-56 | -8.615850e-47 |
| Msa0076640 | Msa0481740 | 0.804496 | 2.100592e-49 | -8.615850e-47 |
| Msa0083890 | Msa0481740 | 0.820468 | 6.750492e-53 | -8.615850e-47 |
| Msa0146200 | Msa0481740 | 0.841033 | 6.073777e-58 | -8.615850e-47 |
| Msa0147790 | Msa0481740 | 0.800704 | 1.271744e-48 | -8.615850e-47 |
| Msa0162680 | Msa0481740 | 0.816383 | 5.690397e-52 | -8.615850e-47 |
| Msa0207260 | Msa0481740 | 0.812893 | 3.371675e-51 | -8.615850e-47 |
| Msa0224210 | Msa0481740 | 0.805852 | 1.092774e-49 | -8.615850e-47 |
| Msa0225200 | Msa0481740 | 0.806201 | 9.227707e-50 | -8.615850e-47 |
| Msa0385320 | Msa0481740 | 0.819012 | 1.451864e-52 | -8.615850e-47 |
| Msa0390790 | Msa0481740 | 0.805298 | 1.428491e-49 | -8.615850e-47 |
| Msa0416830 | Msa0481740 | 0.801821 | 7.515067e-49 | -8.615850e-47 |
| Msa0438070 | Msa0481740 | 0.831963 | 1.238825e-55 | -8.615850e-47 |
| Msa0468450 | Msa0481740 | 0.805748 | 1.149020e-49 | -8.615850e-47 |
| Msa0481740 | Msa0481770 | 0.928810 | 1.702810e-92 | -8.615850e-47 |
| Msa0481740 | Msa0523080 | 0.811501 | 6.784229e-51 | -8.615850e-47 |
| Msa0481740 | Msa0570460 | 0.830485 | 2.860741e-55 | -8.615850e-47 |
| Msa0481740 | Msa0870120 | 0.821778 | 3.369574e-53 | -8.615850e-47 |
| Msa0481740 | Msa0935830 | 0.834950 | 2.227760e-56 | -8.615850e-47 |
| Msa0481740 | Msa0973000 | 0.840029 | 1.112213e-57 | -8.615850e-47 |
| Msa0481740 | Msa0982110 | 0.817036 | 4.060535e-52 | -8.615850e-47 |
| Msa0481740 | Msa1025750 | 0.800148 | 1.651232e-48 | -8.615850e-47 |
| Msa0481740 | Msa1080650 | 0.994787 | 3.349414e-210 | -8.615850e-47 |
| Msa0481740 | Msa1126440 | 0.999094 | 6.367718e-290 | -8.615850e-47 |
| Msa0481740 | Msa1183750 | 0.821841 | 3.258081e-53 | -8.615850e-47 |
| Msa0481740 | Msa1215000 | 0.825379 | 4.841173e-54 | -8.615850e-47 |
| Msa0481740 | Msa1300930 | 0.824034 | 1.004500e-53 | -8.615850e-47 |
| Msa0481740 | Msa1309050 | 0.821981 | 3.024067e-53 | -8.615850e-47 |
| Msa0481740 | Msa1331950 | 0.867556 | 1.254945e-65 | -8.615850e-47 |
| Msa0481740 | Msa1338580 | 0.850545 | 1.584421e-60 | -8.615850e-47 |
| Msa0481740 | Msa1344220 | 0.822487 | 2.307211e-53 | -8.615850e-47 |
| Msa0481740 | Msa1344330 | 0.818199 | 2.220149e-52 | -8.615850e-47 |
| Msa0481740 | Msa1349830 | 0.826833 | 2.183669e-54 | -8.615850e-47 |
| Msa0481740 | Msa1361710 | 0.811974 | 5.351373e-51 | -8.615850e-47 |
| Msa0481740 | Msa1377050 | 0.832987 | 6.906255e-56 | -8.615850e-47 |
| Msa0481740 | Msa1383790 | 0.805251 | 1.460613e-49 | -8.615850e-47 |
| Msa0481740 | Msa1396160 | 0.828910 | 6.911604e-55 | -8.615850e-47 |
| Msa0481740 | Msa1401110 | 0.809191 | 2.137763e-50 | -8.615850e-47 |
| Msa0481740 | Msa1427000 | 0.806462 | 8.132393e-50 | -8.615850e-47 |
| Msa0481740 | Msa1432180 | 0.866306 | 3.139601e-65 | -8.615850e-47 |
| Msa0481740 | Msa1453600 | 0.916814 | 1.131748e-85 | -8.615850e-47 |
| Msa0246140 | Msa0481740 | 0.800465 | 1.423156e-48 | -8.615850e-47 |
| Msa0253120 | Msa0481740 | 0.869954 | 2.101881e-66 | -8.615850e-47 |
| Msa0262360 | Msa0481740 | 0.818702 | 1.708136e-52 | -8.615850e-47 |
| Msa0291900 | Msa0481740 | 0.866045 | 3.799590e-65 | -8.615850e-47 |
| Msa0291920 | Msa0481740 | 0.853037 | 3.112735e-61 | -8.615850e-47 |
| Msa0300140 | Msa0481740 | 0.814115 | 1.816034e-51 | -8.615850e-47 |
| Msa0329880 | Msa0481740 | 0.849998 | 2.255914e-60 | -8.615850e-47 |
| Msa0332360 | Msa0481740 | 0.813422 | 2.579787e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481740 | MtrunA17_Chr7g0267281 | 93.913 | 230 | 11 | 1 | 128 | 357 | 1 | 227 | 2.11e-159 | 445 |
| Msa0481740 | MtrunA17_Chr7g0267281 | 72.093 | 129 | 28 | 2 | 1 | 122 | 92 | 219 | 7.45e-55 | 179 |
| Msa0481740 | MtrunA17_Chr7g0267231 | 78.261 | 230 | 47 | 1 | 128 | 357 | 1 | 227 | 1.24e-119 | 345 |
| Msa0481740 | MtrunA17_Chr7g0267231 | 69.925 | 133 | 29 | 2 | 1 | 126 | 92 | 220 | 1.04e-55 | 181 |
| Msa0481740 | MtrunA17_Chr7g0267291 | 72.936 | 218 | 56 | 2 | 133 | 349 | 2 | 217 | 1.89e-112 | 330 |
| Msa0481740 | MtrunA17_Chr7g0267291 | 89.474 | 133 | 7 | 1 | 1 | 126 | 89 | 221 | 5.78e-78 | 241 |
| Msa0481740 | MtrunA17_Chr7g0267301 | 70.996 | 231 | 60 | 5 | 131 | 356 | 3 | 231 | 1.41e-106 | 311 |
| Msa0481740 | MtrunA17_Chr7g0267301 | 77.273 | 132 | 23 | 1 | 1 | 125 | 93 | 224 | 1.54e-64 | 204 |
| Msa0481740 | MtrunA17_Chr1g0177521 | 47.418 | 213 | 107 | 2 | 146 | 356 | 8 | 217 | 7.64e-50 | 166 |
| Msa0481740 | MtrunA17_Chr1g0177521 | 48.760 | 121 | 55 | 1 | 2 | 115 | 81 | 201 | 5.09e-29 | 111 |
| Msa0481740 | MtrunA17_Chr4g0067041 | 37.398 | 246 | 128 | 7 | 128 | 355 | 1 | 238 | 1.26e-47 | 161 |
| Msa0481740 | MtrunA17_Chr4g0067041 | 35.484 | 124 | 69 | 2 | 1 | 117 | 105 | 224 | 1.50e-18 | 84.0 |
| Msa0481740 | MtrunA17_Chr7g0267181 | 43.043 | 230 | 122 | 5 | 131 | 355 | 2 | 227 | 6.22e-46 | 156 |
| Msa0481740 | MtrunA17_Chr7g0267181 | 42.478 | 113 | 54 | 3 | 5 | 110 | 99 | 207 | 1.13e-20 | 89.4 |
| Msa0481740 | MtrunA17_Chr1g0177471 | 40.562 | 249 | 121 | 6 | 128 | 356 | 1 | 242 | 9.70e-44 | 151 |
| Msa0481740 | MtrunA17_Chr1g0177471 | 39.837 | 123 | 63 | 2 | 1 | 116 | 108 | 226 | 2.08e-21 | 92.0 |
| Msa0481740 | MtrunA17_Chr1g0177531 | 49.194 | 124 | 59 | 3 | 159 | 282 | 11 | 130 | 1.65e-25 | 99.8 |
| Msa0481740 | MtrunA17_Chr6g0478671 | 32.258 | 186 | 108 | 7 | 155 | 335 | 5 | 177 | 6.71e-22 | 92.4 |
| Msa0481740 | MtrunA17_Chr6g0479071 | 30.769 | 182 | 113 | 8 | 163 | 335 | 2 | 179 | 8.19e-18 | 81.3 |
| Msa0481740 | MtrunA17_Chr6g0478661 | 32.432 | 185 | 103 | 8 | 158 | 335 | 5 | 174 | 9.63e-18 | 80.9 |
| Msa0481740 | MtrunA17_Chr6g0479081 | 31.319 | 182 | 112 | 8 | 163 | 335 | 2 | 179 | 7.07e-17 | 78.6 |
| Msa0481740 | MtrunA17_Chr2g0280851 | 29.775 | 178 | 112 | 6 | 181 | 356 | 36 | 202 | 7.62e-15 | 72.4 |
| Msa0481740 | MtrunA17_Chr5g0440571 | 26.047 | 215 | 142 | 6 | 145 | 348 | 41 | 249 | 4.07e-14 | 71.6 |
| Msa0481740 | MtrunA17_Chr1g0206161 | 22.845 | 232 | 143 | 7 | 143 | 356 | 17 | 230 | 3.62e-13 | 68.2 |
| Msa0481740 | MtrunA17_Chr7g0267371 | 29.493 | 217 | 125 | 10 | 148 | 354 | 4 | 202 | 1.01e-12 | 66.6 |
| Msa0481740 | MtrunA17_Chr7g0267361 | 29.442 | 197 | 117 | 5 | 159 | 347 | 67 | 249 | 7.06e-12 | 65.1 |
| Msa0481740 | MtrunA17_Chr5g0433201 | 33.735 | 166 | 95 | 6 | 123 | 279 | 29 | 188 | 3.76e-11 | 62.8 |
| Msa0481740 | MtrunA17_Chr7g0267321 | 23.308 | 266 | 178 | 7 | 85 | 329 | 69 | 329 | 9.59e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481740 | AT2G35980.1 | 43.478 | 230 | 119 | 6 | 132 | 356 | 4 | 227 | 5.53e-60 | 193 |
| Msa0481740 | AT2G35980.1 | 38.983 | 118 | 60 | 3 | 1 | 110 | 93 | 206 | 6.45e-21 | 90.5 |
| Msa0481740 | AT3G11650.1 | 37.398 | 246 | 125 | 6 | 131 | 356 | 3 | 239 | 1.02e-50 | 169 |
| Msa0481740 | AT3G11650.1 | 36.885 | 122 | 65 | 3 | 3 | 116 | 108 | 225 | 3.92e-17 | 80.1 |
| Msa0481740 | AT5G06320.1 | 38.589 | 241 | 126 | 5 | 128 | 356 | 1 | 231 | 4.79e-49 | 165 |
| Msa0481740 | AT5G06320.1 | 37.600 | 125 | 68 | 2 | 3 | 120 | 101 | 222 | 1.15e-22 | 95.5 |
| Msa0481740 | AT2G35460.1 | 36.820 | 239 | 128 | 6 | 136 | 356 | 5 | 238 | 1.12e-45 | 156 |
| Msa0481740 | AT2G35460.1 | 38.525 | 122 | 64 | 2 | 3 | 117 | 108 | 225 | 6.38e-21 | 90.9 |
| Msa0481740 | AT1G32270.2 | 33.548 | 155 | 98 | 2 | 190 | 343 | 1 | 151 | 9.72e-19 | 86.7 |
| Msa0481740 | AT1G32270.1 | 33.333 | 156 | 99 | 2 | 190 | 344 | 1 | 152 | 2.65e-18 | 85.9 |
| Msa0481740 | AT3G11660.1 | 27.551 | 196 | 127 | 6 | 168 | 354 | 18 | 207 | 2.10e-15 | 74.7 |
| Msa0481740 | AT4G05220.1 | 23.590 | 195 | 137 | 4 | 147 | 333 | 16 | 206 | 2.30e-15 | 75.1 |
| Msa0481740 | AT5G53730.1 | 24.309 | 181 | 128 | 4 | 181 | 356 | 37 | 213 | 9.02e-12 | 64.3 |
Find 66 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCTTAGGTTTGAGCTTTC+CGG | 0.214081 | 3_3:-88091336 | None:intergenic |
| TAGAACTCAAAGGAACTTTA+AGG | 0.223136 | 3_3:-88093833 | None:intergenic |
| GCTGTCTCTTCAGTTTCTTC+TGG | 0.267585 | 3_3:+88093331 | Msa0481740:CDS |
| AGGTTTGAGCTTTCCGGATA+TGG | 0.277292 | 3_3:-88091330 | None:intergenic |
| TGAGGCTTTACTTCAGGATT+AGG | 0.300660 | 3_3:+88093757 | Msa0481740:CDS |
| TGTGCTGGTGGTGGAATGGC+GGG | 0.331387 | 3_3:-88093270 | None:intergenic |
| TCTATGTGAGGCTTTACTTC+AGG | 0.355824 | 3_3:+88093751 | Msa0481740:CDS |
| TTTCTCAGGACAACATGTTT+TGG | 0.356714 | 3_3:+88093668 | Msa0481740:CDS |
| AGACTCGGGGATTTGATATC+TGG | 0.358540 | 3_3:+88093783 | Msa0481740:CDS |
| GGTTGCTGCTCTTCTTGTAT+TGG | 0.359850 | 3_3:-88093632 | None:intergenic |
| ATCGCACTCATAGTTCTTGC+TGG | 0.377894 | 3_3:+88093363 | Msa0481740:CDS |
| GCGAGGTCGCATTTGACCTT+AGG | 0.395951 | 3_3:-88091350 | None:intergenic |
| TTGCGAGGGCGAGGTTGTGC+TGG | 0.439367 | 3_3:-88093285 | None:intergenic |
| TTCTGCTTCGGTGGTTGCGA+GGG | 0.450941 | 3_3:-88093299 | None:intergenic |
| TCCTGAGAAAACAGCACTCA+TGG | 0.453273 | 3_3:-88093655 | None:intergenic |
| GGGCGAGGTTGTGCTGGTGG+TGG | 0.461649 | 3_3:-88093279 | None:intergenic |
| GAGTGCTATTCTTCTTGTCT+TGG | 0.462562 | 3_3:-88091166 | None:intergenic |
| AGGTTGTGCTGGTGGTGGAA+TGG | 0.471755 | 3_3:-88093274 | None:intergenic |
| CTTCTGCTTCGGTGGTTGCG+AGG | 0.479014 | 3_3:-88093300 | None:intergenic |
| AGCAACAACAACTTCTGCTT+CGG | 0.479078 | 3_3:-88093311 | None:intergenic |
| TTTAGGATTAGGTTCAAACT+TGG | 0.485508 | 3_3:+88091302 | Msa0481740:CDS |
| CTTCGGTGGTTGCGAGGGCG+AGG | 0.496928 | 3_3:-88093294 | None:intergenic |
| TAGTACGCACCGTTCAATTG+TGG | 0.499335 | 3_3:-88093243 | None:intergenic |
| CAATTGAACGGTGCGTACTA+CGG | 0.499960 | 3_3:+88093246 | Msa0481740:CDS |
| AAACTTGGAGACTCCATATC+CGG | 0.505174 | 3_3:+88091317 | Msa0481740:CDS |
| TTGTGCTGGTGGTGGAATGG+CGG | 0.506260 | 3_3:-88093271 | None:intergenic |
| TTAAGGTCACATTTCACCTT+AGG | 0.511449 | 3_3:-88093816 | None:intergenic |
| AACAACAACTTCTGCTTCGG+TGG | 0.516162 | 3_3:-88093308 | None:intergenic |
| TCAGGATTAGGTTCAGACTC+GGG | 0.521074 | 3_3:+88093769 | Msa0481740:CDS |
| CAACATCTATTATGATAAAG+TGG | 0.524570 | 3_3:+88093539 | Msa0481740:CDS |
| GAAGCTCAAGCATTCTATGA+AGG | 0.529600 | 3_3:+88091095 | Msa0481740:CDS |
| TTCGTCGACATAGAACTTGA+AGG | 0.533993 | 3_3:-88093427 | None:intergenic |
| CGAGGGCGAGGTTGTGCTGG+TGG | 0.535016 | 3_3:-88093282 | None:intergenic |
| GACATAGAACTTGAAGGGGC+GGG | 0.537286 | 3_3:-88093421 | None:intergenic |
| GAATTCAAAGGATGTTGCAT+TGG | 0.540349 | 3_3:-88093862 | None:intergenic |
| CCTGAGAAAACAGCACTCAT+GGG | 0.540981 | 3_3:-88093654 | None:intergenic |
| CAACATCCTTTGAATTCACT+AGG | 0.547733 | 3_3:+88093868 | Msa0481740:CDS |
| TTCAGGATTAGGTTCAGACT+CGG | 0.548093 | 3_3:+88093768 | Msa0481740:CDS |
| ATCTGGTGATTACAAGCCTA+AGG | 0.550508 | 3_3:+88093800 | Msa0481740:CDS |
| TCGTCGACATAGAACTTGAA+GGG | 0.552525 | 3_3:-88093426 | None:intergenic |
| GAGCATTCTACGAAGGGTCG+AGG | 0.554221 | 3_3:+88093568 | Msa0481740:CDS |
| ATCCGGAAAGCTCAAACCTA+AGG | 0.555906 | 3_3:+88091334 | Msa0481740:CDS |
| GGTGGGTATAAGTCGAATGA+AGG | 0.561749 | 3_3:-88091408 | None:intergenic |
| GTACAACGAGATAGAAGATA+AGG | 0.563903 | 3_3:-88093395 | None:intergenic |
| AAGCATTCTATGAAGGGTCG+AGG | 0.566567 | 3_3:+88091102 | Msa0481740:CDS |
| ACATAGAACTTGAAGGGGCG+GGG | 0.572104 | 3_3:-88093420 | None:intergenic |
| AACTCAACATCGCACTTGGT+GGG | 0.572755 | 3_3:-88091425 | None:intergenic |
| CAGGATTAGGTTCAGACTCG+GGG | 0.604096 | 3_3:+88093770 | Msa0481740:CDS |
| AACAAGCAACCACAATTGAA+CGG | 0.610539 | 3_3:+88093234 | Msa0481740:CDS |
| CAATACACTAAACTACAACA+TGG | 0.612954 | 3_3:+88093479 | Msa0481740:CDS |
| AAGCTCAAGCATTCTATGAA+GGG | 0.614742 | 3_3:+88091096 | Msa0481740:CDS |
| CTTGGTCCTAGTGAATTCAA+AGG | 0.619486 | 3_3:-88093874 | None:intergenic |
| CGACATAGAACTTGAAGGGG+CGG | 0.619644 | 3_3:-88093422 | None:intergenic |
| GTGCTGGTGGTGGAATGGCG+GGG | 0.625212 | 3_3:-88093269 | None:intergenic |
| GTTGCATTACGAGTGCTCAA+AGG | 0.627594 | 3_3:-88091377 | None:intergenic |
| CTGAGAAAACAGCACTCATG+GGG | 0.650128 | 3_3:-88093653 | None:intergenic |
| CGTCGACATAGAACTTGAAG+GGG | 0.659465 | 3_3:-88093425 | None:intergenic |
| GTAGAAATCAACATCACACT+TGG | 0.661589 | 3_3:-88093892 | None:intergenic |
| GAGGCACGAGCATTCTACGA+AGG | 0.666387 | 3_3:+88093561 | Msa0481740:CDS |
| AGGCACGAGCATTCTACGAA+GGG | 0.671696 | 3_3:+88093562 | Msa0481740:CDS |
| AAGTTTATGATATCTATGTG+AGG | 0.684871 | 3_3:+88093739 | Msa0481740:CDS |
| CATCTATTATGATAAAGTGG+AGG | 0.687150 | 3_3:+88093542 | Msa0481740:CDS |
| AAGAATAGCACTCCTATGAG+CGG | 0.689932 | 3_3:+88091176 | Msa0481740:CDS |
| GTGTGTGATCACATCAACAT+TGG | 0.703529 | 3_3:-88093595 | None:intergenic |
| GATAGAAGATAAGGACTGCG+AGG | 0.714786 | 3_3:-88093386 | None:intergenic |
| GAGTGCTCAAAGGAACTGCG+AGG | 0.755136 | 3_3:-88091367 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAGTAATATAAATAA+AGG | - | chr3_3:88091773-88091792 | None:intergenic | 10.0% |
| !! | TTATAAATTTGTAAATAGAA+AGG | + | chr3_3:88092378-88092397 | Msa0481740:intron | 10.0% |
| !! | AATTCAATAGTTAAATTAGA+TGG | + | chr3_3:88091876-88091895 | Msa0481740:intron | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr3_3:88092637-88092656 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr3_3:88092636-88092655 | Msa0481740:intron | 15.0% |
| !! | TTAATCATATTTATAAAGCA+TGG | + | chr3_3:88093206-88093225 | Msa0481740:intron | 15.0% |
| !! | TTCAACAAAGATAAAAATGT+TGG | + | chr3_3:88091251-88091270 | Msa0481740:CDS | 20.0% |
| !! | TTGTATGTAATTCTGATAAT+TGG | + | chr3_3:88091515-88091534 | Msa0481740:intron | 20.0% |
| !!! | TCTAGTTGTTTTTGTTTTAA+TGG | + | chr3_3:88091611-88091630 | Msa0481740:intron | 20.0% |
| !!! | CTAGTTGTTTTTGTTTTAAT+GGG | + | chr3_3:88091612-88091631 | Msa0481740:intron | 20.0% |
| !! | ATACATTTATCAAACACAAT+TGG | - | chr3_3:88091809-88091828 | None:intergenic | 20.0% |
| !! | TTAAATTAGATGGTTAAAGT+AGG | + | chr3_3:88091886-88091905 | Msa0481740:intron | 20.0% |
| !!! | GATTTTTTTCCTTACAAATT+AGG | - | chr3_3:88092094-88092113 | None:intergenic | 20.0% |
| !!! | TTTTCATTGACTATTGATTA+TGG | + | chr3_3:88092205-88092224 | Msa0481740:intron | 20.0% |
| !!! | AAGGTTATTATTTATTTTGC+TGG | + | chr3_3:88092397-88092416 | Msa0481740:intron | 20.0% |
| !!! | AGGTTATTATTTATTTTGCT+GGG | + | chr3_3:88092398-88092417 | Msa0481740:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr3_3:88092550-88092569 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr3_3:88092627-88092646 | Msa0481740:intron | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | - | chr3_3:88092670-88092689 | None:intergenic | 20.0% |
| !! | ATTCAATTTCTACTTTGTTA+AGG | - | chr3_3:88092950-88092969 | None:intergenic | 20.0% |
| !! | TTTATAGCAAATATTCAACA+CGG | + | chr3_3:88092975-88092994 | Msa0481740:intron | 20.0% |
| !! | TGTATATATAGAAAGGAATA+GGG | - | chr3_3:88093041-88093060 | None:intergenic | 20.0% |
| !!! | TTTCTTGTTTTTGTATAGAG+TGG | + | chr3_3:88091673-88091692 | Msa0481740:intron | 25.0% |
| !!! | TTCTTGTTTTTGTATAGAGT+GGG | + | chr3_3:88091674-88091693 | Msa0481740:intron | 25.0% |
| !! | TTTTTCCTTACAAATTAGGA+CGG | - | chr3_3:88092090-88092109 | None:intergenic | 25.0% |
| !! | ACTATTGATTATGGAGAAAA+TGG | + | chr3_3:88092214-88092233 | Msa0481740:intron | 25.0% |
| !!! | TGTCTTTTTTGCTTACATTT+TGG | + | chr3_3:88092313-88092332 | Msa0481740:intron | 25.0% |
| !!! | GTCTTTTTTGCTTACATTTT+GGG | + | chr3_3:88092314-88092333 | Msa0481740:intron | 25.0% |
| ! | ATTTAATCTTGTCATCACAT+GGG | - | chr3_3:88092441-88092460 | None:intergenic | 25.0% |
| ! | ATGACAAGATTAAATGTCAA+AGG | + | chr3_3:88092446-88092465 | Msa0481740:intron | 25.0% |
| ! | TGTTAAGGAAGCTATATAAA+TGG | - | chr3_3:88092935-88092954 | None:intergenic | 25.0% |
| ! | GTATATATAGAAAGGAATAG+GGG | - | chr3_3:88093040-88093059 | None:intergenic | 25.0% |
| ! | GTGTATATATAGAAAGGAAT+AGG | - | chr3_3:88093042-88093061 | None:intergenic | 25.0% |
| ! | TGTATAAAATTGATGCCTTA+TGG | - | chr3_3:88093108-88093127 | None:intergenic | 25.0% |
| !!! | TAGATGTTGAGTTTTTTGTT+TGG | - | chr3_3:88093528-88093547 | None:intergenic | 25.0% |
| ! | CAACATCTATTATGATAAAG+TGG | + | chr3_3:88093539-88093558 | Msa0481740:CDS | 25.0% |
| ! | AAGTTTATGATATCTATGTG+AGG | + | chr3_3:88093739-88093758 | Msa0481740:CDS | 25.0% |
| !!! | TTGGTATTTTTAGAACTCAA+AGG | - | chr3_3:88093846-88093865 | None:intergenic | 25.0% |
| !!! | AGATACCGAGTTTTTTGTTA+GGG | - | chr3_3:88091061-88091080 | None:intergenic | 30.0% |
| !!! | TAGATACCGAGTTTTTTGTT+AGG | - | chr3_3:88091062-88091081 | None:intergenic | 30.0% |
| ! | TCTATGTGAAGCTCTATTTT+AGG | + | chr3_3:88091285-88091304 | Msa0481740:intron | 30.0% |
| !!! | TGAAGCTCTATTTTAGGATT+AGG | + | chr3_3:88091291-88091310 | Msa0481740:intron | 30.0% |
| ! | TTTAGGATTAGGTTCAAACT+TGG | + | chr3_3:88091302-88091321 | Msa0481740:CDS | 30.0% |
| TAATTAACATCGATGCTAGT+GGG | - | chr3_3:88091997-88092016 | None:intergenic | 30.0% | |
| TTAATTAACATCGATGCTAG+TGG | - | chr3_3:88091998-88092017 | None:intergenic | 30.0% | |
| CATTTAATCTTGTCATCACA+TGG | - | chr3_3:88092442-88092461 | None:intergenic | 30.0% | |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr3_3:88092718-88092737 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr3_3:88092719-88092738 | Msa0481740:intron | 30.0% |
| !!! | AAATGGTTGATGATTTTGAC+CGG | - | chr3_3:88092918-88092937 | None:intergenic | 30.0% |
| !!! | ATAGGGGTTGGATTTTTTAT+GGG | - | chr3_3:88093024-88093043 | None:intergenic | 30.0% |
| !!! | AATAGGGGTTGGATTTTTTA+TGG | - | chr3_3:88093025-88093044 | None:intergenic | 30.0% |
| TGTGGTGTGTATATATAGAA+AGG | - | chr3_3:88093048-88093067 | None:intergenic | 30.0% | |
| AATGAGAGCAAGATATACTA+TGG | - | chr3_3:88093188-88093207 | None:intergenic | 30.0% | |
| CAATACACTAAACTACAACA+TGG | + | chr3_3:88093479-88093498 | Msa0481740:CDS | 30.0% | |
| CATCTATTATGATAAAGTGG+AGG | + | chr3_3:88093542-88093561 | Msa0481740:CDS | 30.0% | |
| TAGAACTCAAAGGAACTTTA+AGG | - | chr3_3:88093836-88093855 | None:intergenic | 30.0% | |
| !!! | GAGTTTTTTGTTAGGGTTGT+GGG | - | chr3_3:88091054-88091073 | None:intergenic | 35.0% |
| CACAACCCTAACAAAAAACT+CGG | + | chr3_3:88091053-88091072 | Msa0481740:CDS | 35.0% | |
| AAGCTCAAGCATTCTATGAA+GGG | + | chr3_3:88091096-88091115 | Msa0481740:CDS | 35.0% | |
| AACAACTAGAGTACATTGCA+TGG | - | chr3_3:88091601-88091620 | None:intergenic | 35.0% | |
| AATTAACATCGATGCTAGTG+GGG | - | chr3_3:88091996-88092015 | None:intergenic | 35.0% | |
| !!! | TTGCTTACATTTTGGGACAA+AGG | + | chr3_3:88092321-88092340 | Msa0481740:intron | 35.0% |
| !!! | TTTTGGGACAAAGGAATTGA+CGG | + | chr3_3:88092330-88092349 | Msa0481740:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr3_3:88092484-88092503 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr3_3:88092584-88092603 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr3_3:88092588-88092607 | None:intergenic | 35.0% |
| AAAAATTGTACCCACTCAAG+AGG | + | chr3_3:88092790-88092809 | Msa0481740:intron | 35.0% | |
| AAAATTGTACCCACTCAAGA+GGG | + | chr3_3:88092791-88092810 | Msa0481740:intron | 35.0% | |
| AAACAAATTCCCTCTTGAGT+GGG | - | chr3_3:88092803-88092822 | None:intergenic | 35.0% | |
| !!! | GGATTTTTTATGGGATAACG+CGG | - | chr3_3:88093015-88093034 | None:intergenic | 35.0% |
| ATATAGAAAGGAATAGGGGT+TGG | - | chr3_3:88093036-88093055 | None:intergenic | 35.0% | |
| TGAAAAGAAGAGTTGTGTTG+TGG | - | chr3_3:88093133-88093152 | None:intergenic | 35.0% | |
| AACAAGCAACCACAATTGAA+CGG | + | chr3_3:88093234-88093253 | Msa0481740:CDS | 35.0% | |
| GTACAACGAGATAGAAGATA+AGG | - | chr3_3:88093398-88093417 | None:intergenic | 35.0% | |
| ! | TTTCTCAGGACAACATGTTT+TGG | + | chr3_3:88093668-88093687 | Msa0481740:CDS | 35.0% |
| TTAAGGTCACATTTCACCTT+AGG | - | chr3_3:88093819-88093838 | None:intergenic | 35.0% | |
| GAATTCAAAGGATGTTGCAT+TGG | - | chr3_3:88093865-88093884 | None:intergenic | 35.0% | |
| CAACATCCTTTGAATTCACT+AGG | + | chr3_3:88093868-88093887 | Msa0481740:CDS | 35.0% | |
| GTAGAAATCAACATCACACT+TGG | - | chr3_3:88093895-88093914 | None:intergenic | 35.0% | |
| !!! | CGAGTTTTTTGTTAGGGTTG+TGG | - | chr3_3:88091055-88091074 | None:intergenic | 40.0% |
| GAAGCTCAAGCATTCTATGA+AGG | + | chr3_3:88091095-88091114 | Msa0481740:CDS | 40.0% | |
| ! | GAGTGCTATTCTTCTTGTCT+TGG | - | chr3_3:88091169-88091188 | None:intergenic | 40.0% |
| AAGAATAGCACTCCTATGAG+CGG | + | chr3_3:88091176-88091195 | Msa0481740:CDS | 40.0% | |
| AAACTTGGAGACTCCATATC+CGG | + | chr3_3:88091317-88091336 | Msa0481740:CDS | 40.0% | |
| TTAGAACTCAACATCGCACT+TGG | - | chr3_3:88091432-88091451 | None:intergenic | 40.0% | |
| ACTAGAGTACATTGCATGGA+TGG | - | chr3_3:88091597-88091616 | None:intergenic | 40.0% | |
| !!! | TCTTTTAGGGTCTCTCTAGT+TGG | - | chr3_3:88091958-88091977 | None:intergenic | 40.0% |
| ACTAGAGAGACCCTAAAAGA+AGG | + | chr3_3:88091958-88091977 | Msa0481740:intron | 40.0% | |
| ! | GGGTGACAATCCTTCTTTTA+GGG | - | chr3_3:88091971-88091990 | None:intergenic | 40.0% |
| ! | TCCATCCGTCCTAATTTGTA+AGG | + | chr3_3:88092082-88092101 | Msa0481740:intron | 40.0% |
| TCCTTACAAATTAGGACGGA+TGG | - | chr3_3:88092086-88092105 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr3_3:88092723-88092742 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr3_3:88092585-88092604 | None:intergenic | 40.0% |
| CGGAGCGAGTATAAGTATAA+CGG | + | chr3_3:88092739-88092758 | Msa0481740:intron | 40.0% | |
| AGCGAGTATAAGTATAACGG+CGG | + | chr3_3:88092742-88092761 | Msa0481740:intron | 40.0% | |
| GAAACAAATTCCCTCTTGAG+TGG | - | chr3_3:88092804-88092823 | None:intergenic | 40.0% | |
| TGTTCAATCACCTTCGTAGT+TGG | + | chr3_3:88092839-88092858 | Msa0481740:intron | 40.0% | |
| AATCACCTTCGTAGTTGGTT+CGG | + | chr3_3:88092844-88092863 | Msa0481740:intron | 40.0% | |
| GCAAAGTTTGATGGAGATTG+TGG | - | chr3_3:88092894-88092913 | None:intergenic | 40.0% | |
| ATCTCCATCAAACTTTGCAC+CGG | + | chr3_3:88092896-88092915 | Msa0481740:intron | 40.0% | |
| GTGAGATAAGAAGCAAAGTG+TGG | - | chr3_3:88093066-88093085 | None:intergenic | 40.0% | |
| AGCAACAACAACTTCTGCTT+CGG | - | chr3_3:88093314-88093333 | None:intergenic | 40.0% | |
| TCGTCGACATAGAACTTGAA+GGG | - | chr3_3:88093429-88093448 | None:intergenic | 40.0% | |
| TTCGTCGACATAGAACTTGA+AGG | - | chr3_3:88093430-88093449 | None:intergenic | 40.0% | |
| GTGTGTGATCACATCAACAT+TGG | - | chr3_3:88093598-88093617 | None:intergenic | 40.0% | |
| TCTATGTGAGGCTTTACTTC+AGG | + | chr3_3:88093751-88093770 | Msa0481740:CDS | 40.0% | |
| TGAGGCTTTACTTCAGGATT+AGG | + | chr3_3:88093757-88093776 | Msa0481740:CDS | 40.0% | |
| TTCAGGATTAGGTTCAGACT+CGG | + | chr3_3:88093768-88093787 | Msa0481740:CDS | 40.0% | |
| ATCTGGTGATTACAAGCCTA+AGG | + | chr3_3:88093800-88093819 | Msa0481740:CDS | 40.0% | |
| CTTGGTCCTAGTGAATTCAA+AGG | - | chr3_3:88093877-88093896 | None:intergenic | 40.0% | |
| AAGCATTCTATGAAGGGTCG+AGG | + | chr3_3:88091102-88091121 | Msa0481740:CDS | 45.0% | |
| CCAGAAAAAACACCGCTCAT+AGG | - | chr3_3:88091191-88091210 | None:intergenic | 45.0% | |
| !!! | CCTATGAGCGGTGTTTTTTC+TGG | + | chr3_3:88091188-88091207 | Msa0481740:CDS | 45.0% |
| AGGTTTGAGCTTTCCGGATA+TGG | - | chr3_3:88091333-88091352 | None:intergenic | 45.0% | |
| ATCCGGAAAGCTCAAACCTA+AGG | + | chr3_3:88091334-88091353 | Msa0481740:CDS | 45.0% | |
| GACCTTAGGTTTGAGCTTTC+CGG | - | chr3_3:88091339-88091358 | None:intergenic | 45.0% | |
| GTTGCATTACGAGTGCTCAA+AGG | - | chr3_3:88091380-88091399 | None:intergenic | 45.0% | |
| GGTGGGTATAAGTCGAATGA+AGG | - | chr3_3:88091411-88091430 | None:intergenic | 45.0% | |
| AACTCAACATCGCACTTGGT+GGG | - | chr3_3:88091428-88091447 | None:intergenic | 45.0% | |
| ! | GGGGTGACAATCCTTCTTTT+AGG | - | chr3_3:88091972-88091991 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr3_3:88092722-88092741 | None:intergenic | 45.0% |
| TAACGGCGGCTATTATCAAG+TGG | + | chr3_3:88092756-88092775 | Msa0481740:intron | 45.0% | |
| TTGACCGGTGCAAAGTTTGA+TGG | - | chr3_3:88092903-88092922 | None:intergenic | 45.0% | |
| CACCATACGTTCTCTCCATA+AGG | + | chr3_3:88093090-88093109 | Msa0481740:intron | 45.0% | |
| TGCCTTATGGAGAGAACGTA+TGG | - | chr3_3:88093095-88093114 | None:intergenic | 45.0% | |
| TAGTACGCACCGTTCAATTG+TGG | - | chr3_3:88093246-88093265 | None:intergenic | 45.0% | |
| CAATTGAACGGTGCGTACTA+CGG | + | chr3_3:88093246-88093265 | Msa0481740:CDS | 45.0% | |
| AACAACAACTTCTGCTTCGG+TGG | - | chr3_3:88093311-88093330 | None:intergenic | 45.0% | |
| GCTGTCTCTTCAGTTTCTTC+TGG | + | chr3_3:88093331-88093350 | Msa0481740:CDS | 45.0% | |
| ATCGCACTCATAGTTCTTGC+TGG | + | chr3_3:88093363-88093382 | Msa0481740:CDS | 45.0% | |
| GATAGAAGATAAGGACTGCG+AGG | - | chr3_3:88093389-88093408 | None:intergenic | 45.0% | |
| CGTCGACATAGAACTTGAAG+GGG | - | chr3_3:88093428-88093447 | None:intergenic | 45.0% | |
| GGTTGCTGCTCTTCTTGTAT+TGG | - | chr3_3:88093635-88093654 | None:intergenic | 45.0% | |
| CTGAGAAAACAGCACTCATG+GGG | - | chr3_3:88093656-88093675 | None:intergenic | 45.0% | |
| CCTGAGAAAACAGCACTCAT+GGG | - | chr3_3:88093657-88093676 | None:intergenic | 45.0% | |
| TCCTGAGAAAACAGCACTCA+TGG | - | chr3_3:88093658-88093677 | None:intergenic | 45.0% | |
| TCAGGATTAGGTTCAGACTC+GGG | + | chr3_3:88093769-88093788 | Msa0481740:CDS | 45.0% | |
| AGACTCGGGGATTTGATATC+TGG | + | chr3_3:88093783-88093802 | Msa0481740:CDS | 45.0% | |
| GAACTCAACATCGCACTTGG+TGG | - | chr3_3:88091429-88091448 | None:intergenic | 50.0% | |
| TAACATCGATGCTAGTGGGG+CGG | - | chr3_3:88091993-88092012 | None:intergenic | 50.0% | |
| TGGGACAAAGGAATTGACGG+AGG | + | chr3_3:88092333-88092352 | Msa0481740:intron | 50.0% | |
| GGGACAAAGGAATTGACGGA+GGG | + | chr3_3:88092334-88092353 | Msa0481740:intron | 50.0% | |
| ACATAGAACTTGAAGGGGCG+GGG | - | chr3_3:88093423-88093442 | None:intergenic | 50.0% | |
| GACATAGAACTTGAAGGGGC+GGG | - | chr3_3:88093424-88093443 | None:intergenic | 50.0% | |
| CGACATAGAACTTGAAGGGG+CGG | - | chr3_3:88093425-88093444 | None:intergenic | 50.0% | |
| AGGCACGAGCATTCTACGAA+GGG | + | chr3_3:88093562-88093581 | Msa0481740:CDS | 50.0% | |
| !!! | CCCATGAGTGCTGTTTTCTC+AGG | + | chr3_3:88093654-88093673 | Msa0481740:CDS | 50.0% |
| CAGGATTAGGTTCAGACTCG+GGG | + | chr3_3:88093770-88093789 | Msa0481740:CDS | 50.0% | |
| GCGAGGTCGCATTTGACCTT+AGG | - | chr3_3:88091353-88091372 | None:intergenic | 55.0% | |
| GAGTGCTCAAAGGAACTGCG+AGG | - | chr3_3:88091370-88091389 | None:intergenic | 55.0% | |
| AACATCGATGCTAGTGGGGC+GGG | - | chr3_3:88091992-88092011 | None:intergenic | 55.0% | |
| CTGGTCCGAACCAACTACGA+AGG | - | chr3_3:88092852-88092871 | None:intergenic | 55.0% | |
| !! | CTTCGTAGTTGGTTCGGACC+AGG | + | chr3_3:88092850-88092869 | Msa0481740:intron | 55.0% |
| !! | TAGTTGGTTCGGACCAGGCT+GGG | + | chr3_3:88092855-88092874 | Msa0481740:intron | 55.0% |
| ACTGAGTTTCGTTCCCAGCC+TGG | - | chr3_3:88092871-88092890 | None:intergenic | 55.0% | |
| !! | TTGTGCTGGTGGTGGAATGG+CGG | - | chr3_3:88093274-88093293 | None:intergenic | 55.0% |
| !! | AGGTTGTGCTGGTGGTGGAA+TGG | - | chr3_3:88093277-88093296 | None:intergenic | 55.0% |
| TTCTGCTTCGGTGGTTGCGA+GGG | - | chr3_3:88093302-88093321 | None:intergenic | 55.0% | |
| GAGGCACGAGCATTCTACGA+AGG | + | chr3_3:88093561-88093580 | Msa0481740:CDS | 55.0% | |
| GAGCATTCTACGAAGGGTCG+AGG | + | chr3_3:88093568-88093587 | Msa0481740:CDS | 55.0% | |
| ACATCGATGCTAGTGGGGCG+GGG | - | chr3_3:88091991-88092010 | None:intergenic | 60.0% | |
| !! | GTAGTTGGTTCGGACCAGGC+TGG | + | chr3_3:88092854-88092873 | Msa0481740:intron | 60.0% |
| !! | TGTGCTGGTGGTGGAATGGC+GGG | - | chr3_3:88093273-88093292 | None:intergenic | 60.0% |
| CTTCTGCTTCGGTGGTTGCG+AGG | - | chr3_3:88093303-88093322 | None:intergenic | 60.0% | |
| !! | GTGCTGGTGGTGGAATGGCG+GGG | - | chr3_3:88093272-88093291 | None:intergenic | 65.0% |
| TTGCGAGGGCGAGGTTGTGC+TGG | - | chr3_3:88093288-88093307 | None:intergenic | 65.0% | |
| ! | GGGCGAGGTTGTGCTGGTGG+TGG | - | chr3_3:88093282-88093301 | None:intergenic | 70.0% |
| CGAGGGCGAGGTTGTGCTGG+TGG | - | chr3_3:88093285-88093304 | None:intergenic | 70.0% | |
| CTTCGGTGGTTGCGAGGGCG+AGG | - | chr3_3:88093297-88093316 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 88091032 | 88093917 | 88091032 | ID=Msa0481740;Name=Msa0481740 |
| chr3_3 | mRNA | 88091032 | 88093917 | 88091032 | ID=Msa0481740-mRNA-1;Parent=Msa0481740;Name=Msa0481740-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|0|0|3|0|357 |
| chr3_3 | exon | 88091032 | 88091274 | 88091032 | ID=Msa0481740-mRNA-1:exon:25648;Parent=Msa0481740-mRNA-1 |
| chr3_3 | exon | 88091296 | 88091432 | 88091296 | ID=Msa0481740-mRNA-1:exon:25649;Parent=Msa0481740-mRNA-1 |
| chr3_3 | exon | 88093224 | 88093917 | 88093224 | ID=Msa0481740-mRNA-1:exon:25650;Parent=Msa0481740-mRNA-1 |
| chr3_3 | CDS | 88091032 | 88091274 | 88091032 | ID=Msa0481740-mRNA-1:cds;Parent=Msa0481740-mRNA-1 |
| chr3_3 | CDS | 88091296 | 88091432 | 88091296 | ID=Msa0481740-mRNA-1:cds;Parent=Msa0481740-mRNA-1 |
| chr3_3 | CDS | 88093224 | 88093917 | 88093224 | ID=Msa0481740-mRNA-1:cds;Parent=Msa0481740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
