AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0731580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731580 MtrunA17_Chr5g0425711 94.987 379 19 0 1 379 1 379 0.0 755
Msa0731580 MtrunA17_Chr3g0115661 71.965 346 87 4 30 373 24 361 0.0 515
Msa0731580 MtrunA17_Chr8g0382441 65.075 335 111 3 44 376 32 362 2.10e-157 447
Msa0731580 MtrunA17_Chr4g0056481 52.410 332 136 2 68 377 57 388 2.00e-124 364
Msa0731580 MtrunA17_Chr4g0018441 54.878 328 126 2 72 377 59 386 9.78e-122 357
Msa0731580 MtrunA17_Chr3g0079281 53.191 329 128 3 69 374 62 387 5.33e-119 350
Msa0731580 MtrunA17_Chr3g0126491 51.220 287 129 1 97 372 69 355 1.31e-102 307
Msa0731580 MtrunA17_Chr8g0347141 48.432 287 135 3 97 371 25 310 6.00e-97 291
Msa0731580 MtrunA17_Chr4g0018781 42.045 88 50 1 88 174 21 108 2.19e-13 65.9
Msa0731580 MtrunA17_Chr4g0018791 48.387 62 31 1 254 314 2 63 8.65e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731580 AT1G78090.1 59.740 385 128 6 1 373 1 370 8.36e-156 443
Msa0731580 AT5G10100.3 62.275 334 120 2 46 375 37 368 5.12e-151 431
Msa0731580 AT5G10100.1 62.275 334 120 2 46 375 48 379 6.23e-151 431
Msa0731580 AT5G65140.1 61.254 351 130 3 24 371 20 367 6.89e-151 431
Msa0731580 AT4G39770.1 63.551 321 112 2 56 374 30 347 1.58e-150 429
Msa0731580 AT2G22190.1 60.870 345 131 2 28 372 10 350 1.40e-149 427
Msa0731580 AT1G78090.2 60.108 371 121 6 1 359 1 356 1.43e-149 427
Msa0731580 AT1G35910.1 63.363 333 110 4 51 375 39 367 3.62e-149 426
Msa0731580 AT1G22210.1 63.782 312 103 3 69 373 9 317 1.27e-145 416
Msa0731580 AT4G39770.2 64.379 306 104 2 56 359 30 332 1.34e-144 413
Msa0731580 AT2G22190.2 61.446 332 124 2 28 359 10 337 1.76e-144 414
Msa0731580 AT5G10100.2 62.579 318 113 2 46 359 37 352 5.70e-144 412
Msa0731580 AT5G10100.4 57.485 334 116 3 46 375 48 359 8.86e-132 382
Msa0731580 AT5G65140.3 58.104 327 130 4 6 328 1 324 3.18e-129 374
Msa0731580 AT5G51460.2 55.452 321 126 4 69 372 62 382 1.73e-121 357
Msa0731580 AT5G51460.4 55.452 321 126 4 69 372 62 382 1.73e-121 357
Msa0731580 AT4G22590.1 54.180 323 129 3 71 374 50 372 1.43e-120 354
Msa0731580 AT5G51460.1 55.280 322 126 4 69 372 62 383 1.05e-119 352
Msa0731580 AT5G51460.5 55.280 322 126 4 69 372 62 383 1.05e-119 352
Msa0731580 AT5G51460.3 55.280 322 126 4 69 372 62 383 1.05e-119 352
Msa0731580 AT4G12430.1 54.037 322 135 2 68 376 44 365 2.90e-117 345
Msa0731580 AT5G65140.2 59.155 284 110 3 24 304 20 300 8.03e-113 332

Find 102 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCCCTTGTCCCATTTAA+TGG 0.107672 5_1:+42644239 None:intergenic
AAATTCGACCAACCATTAAA+TGG 0.184228 5_1:-42644251 Msa0731580:CDS
AACTTCAGTGTCTGAATTAA+TGG 0.186430 5_1:-42645781 Msa0731580:CDS
TTTATGCCTCATTTGCAATA+TGG 0.223415 5_1:-42643350 Msa0731580:three_prime_UTR
TTGACACCGACCCAAGAATT+TGG 0.244483 5_1:-42643572 Msa0731580:three_prime_UTR
AGAAGAAAAGAGAATCTATT+TGG 0.248980 5_1:+42643457 None:intergenic
GGCATCCCTTGTTTGAAAAT+AGG 0.253122 5_1:-42643531 Msa0731580:three_prime_UTR
TTACTCATGTAGGCTTTATC+TGG 0.261967 5_1:+42645278 None:intergenic
AAGCCATGGGATGGATATTA+AGG 0.269464 5_1:-42644942 Msa0731580:CDS
AGGAATCTATAAATGAGTTT+AGG 0.278275 5_1:-42643598 Msa0731580:three_prime_UTR
CCTTGTGTTAGCTTTAGTTT+TGG 0.279314 5_1:+42644288 None:intergenic
AATTCAGACACTGAAGTTCT+TGG 0.288315 5_1:+42645786 None:intergenic
TTAGTGCTTCTCCTATTTGT+TGG 0.289846 5_1:+42644917 None:intergenic
GGAATCTATAAATGAGTTTA+GGG 0.305631 5_1:-42643597 Msa0731580:three_prime_UTR
GTGACTTTCCCAACATATTC+TGG 0.318648 5_1:+42645871 None:intergenic
GAGAAAACGAAGTGTGTTCC+AGG 0.327309 5_1:-42644604 Msa0731580:CDS
TTATGCCTCATTTGCAATAT+GGG 0.331313 5_1:-42643349 Msa0731580:three_prime_UTR
CGCAATAGGGGCCAAGGGTG+TGG 0.335378 5_1:-42643848 Msa0731580:CDS
TAAAGCCTACATGAGTAAAA+AGG 0.339761 5_1:-42645273 Msa0731580:intron
CTACCCCTTGACCAAATTCT+TGG 0.346499 5_1:+42643561 None:intergenic
GGCTTACAGTCCAATGAGTT+TGG 0.362955 5_1:+42645601 None:intergenic
AAACAATCTCATTAAGCCTT+TGG 0.363708 5_1:-42645727 Msa0731580:CDS
TTATCTGGATCTGCTACAAT+TGG 0.368355 5_1:+42645293 None:intergenic
CAAATAATGTACAATACAAA+TGG 0.375691 5_1:-42645359 Msa0731580:CDS
AATGTATTTCCAATCTATAT+TGG 0.376405 5_1:-42644050 Msa0731580:CDS
CTTGAATTTCTTACCTCAGA+TGG 0.386100 5_1:+42643770 None:intergenic
TGTAGCTATTTAGCTTTGTA+AGG 0.388676 5_1:-42644988 Msa0731580:intron
GCTATTTAGCTTTGTAAGGT+TGG 0.390975 5_1:-42644984 Msa0731580:CDS
GATTGTGAATGAGAGGTTAA+TGG 0.392429 5_1:-42645844 Msa0731580:CDS
TTTCCCACAGCCATTGTTAG+TGG 0.400255 5_1:-42645123 Msa0731580:CDS
GAATTAATGGCTTTGTTTGG+TGG 0.404929 5_1:-42645768 Msa0731580:CDS
TCTGAATTAATGGCTTTGTT+TGG 0.409233 5_1:-42645771 Msa0731580:CDS
CCCTTGTCCCATTTAATGGT+TGG 0.411248 5_1:+42644243 None:intergenic
AATTAATGGCTTTGTTTGGT+GGG 0.420794 5_1:-42645767 Msa0731580:CDS
TATTTAGAGTTGGGCACCAT+TGG 0.421897 5_1:-42644343 Msa0731580:intron
GGGTCAGGTTTATAAGATCT+TGG 0.424468 5_1:-42644629 Msa0731580:intron
GAGAAGAAGAACAAAGAGAG+AGG 0.440385 5_1:+42645961 None:intergenic
TATCTGGATCTGCTACAATT+GGG 0.442252 5_1:+42645294 None:intergenic
GCAATAGGGGCCAAGGGTGT+GGG 0.454198 5_1:-42643847 Msa0731580:CDS
ATATTAAGGGTCCAACAAAT+AGG 0.455858 5_1:-42644928 Msa0731580:CDS
CGATCGTCACCAATATAGAT+TGG 0.456578 5_1:+42644041 None:intergenic
AACCGATGAAGATGCTTTCA+AGG 0.459255 5_1:-42644018 Msa0731580:intron
TGGTCAAGGGGTAGTTCAAA+TGG 0.461231 5_1:-42643552 Msa0731580:three_prime_UTR
ATAGAGAAGAACAGAGAGAT+GGG 0.461260 5_1:+42645989 None:intergenic
TACCCCTTGACCAAATTCTT+GGG 0.470345 5_1:+42643562 None:intergenic
AAAATCGTGACCAAACTCAT+TGG 0.474132 5_1:-42645611 Msa0731580:CDS
GCTACGAACCTCATTGATCA+TGG 0.476130 5_1:+42644754 None:intergenic
GATAGAGAAGAACAGAGAGA+TGG 0.479405 5_1:+42645988 None:intergenic
ATGACTAACCAGAATATGTT+GGG 0.482279 5_1:-42645879 Msa0731580:CDS
AATTCGACCAACCATTAAAT+GGG 0.483720 5_1:-42644250 Msa0731580:CDS
TTATACTATGCTGGAAGCCA+TGG 0.484718 5_1:-42644956 Msa0731580:CDS
CCATTAAATGGGACAAGGGA+AGG 0.493371 5_1:-42644239 Msa0731580:CDS
AATGACTAACCAGAATATGT+TGG 0.502586 5_1:-42645880 Msa0731580:CDS
TTGGCTGAATTATACTATGC+TGG 0.505769 5_1:-42644965 Msa0731580:CDS
AAATAATGTACAATACAAAT+GGG 0.510120 5_1:-42645358 Msa0731580:CDS
TTAGATGAGAGTGACATTGA+AGG 0.514001 5_1:-42645160 Msa0731580:intron
AATGTCCCATATTGCAAATG+AGG 0.515183 5_1:+42643344 None:intergenic
GAAGTGTGTTCCAGGGGCTA+TGG 0.519970 5_1:-42644596 Msa0731580:CDS
AGCCATGGGATGGATATTAA+GGG 0.535930 5_1:-42644941 Msa0731580:CDS
TACCTTGAAAGCATCTTCAT+CGG 0.538497 5_1:+42644016 None:intergenic
AACACAAGGGAGAAAAGTGT+TGG 0.542726 5_1:-42644274 Msa0731580:CDS
TTATACACTGAAACAAGAAA+AGG 0.543095 5_1:+42643431 None:intergenic
AGTAGGAGAAGAAGCTCTCA+TGG 0.543615 5_1:+42645653 None:intergenic
CTCACAAGTTGTAGAGAGCT+AGG 0.543818 5_1:-42643618 Msa0731580:exon
TTGAACATGTTCAAAGCAGA+AGG 0.546219 5_1:+42645383 None:intergenic
CACACGTTTGCATGCGCATG+CGG 0.547592 5_1:-42643391 Msa0731580:three_prime_UTR
GACCCTTAATATCCATCCCA+TGG 0.547681 5_1:+42644939 None:intergenic
GTGTGTTCCAGGGGCTATGG+TGG 0.549508 5_1:-42644593 Msa0731580:CDS
TCTTCCACTAACAATGGCTG+TGG 0.554269 5_1:+42645119 None:intergenic
ATACAAGAATCCCACACCCT+TGG 0.561032 5_1:+42643837 None:intergenic
AGAAGAAGAACAAAGAGAGA+GGG 0.561584 5_1:+42645962 None:intergenic
ATCTGGATCTGCTACAATTG+GGG 0.562431 5_1:+42645295 None:intergenic
AAGCTTACTTGTTCAGCCAA+TGG 0.567677 5_1:+42644327 None:intergenic
CATTAAATGGGACAAGGGAA+GGG 0.571676 5_1:-42644238 Msa0731580:CDS
ACATGTTCAAAGCAGAAGGA+TGG 0.573560 5_1:+42645387 None:intergenic
TGATCATTATCATCTTCCAA+AGG 0.579315 5_1:+42645711 None:intergenic
ATGGGCAAGAATTCACTAGC+AGG 0.580507 5_1:+42644773 None:intergenic
GATTCGTGTCTGGTTCGAGT+AGG 0.581250 5_1:+42645636 None:intergenic
CTATGCTGGAAGCCATGGGA+TGG 0.581523 5_1:-42644951 Msa0731580:CDS
CCTTGACCAAATTCTTGGGT+CGG 0.585466 5_1:+42643566 None:intergenic
CCAAAACTAAAGCTAACACA+AGG 0.588195 5_1:-42644288 Msa0731580:CDS
CGACCCAAGAATTTGGTCAA+GGG 0.600225 5_1:-42643565 Msa0731580:three_prime_UTR
CTACGAACCTCATTGATCAT+GGG 0.600560 5_1:+42644755 None:intergenic
TCAGGTTTATAAGATCTTGG+TGG 0.601263 5_1:-42644626 Msa0731580:intron
TATACTATGCTGGAAGCCAT+GGG 0.609558 5_1:-42644955 Msa0731580:CDS
TATTGTACTTAATGTACGTG+TGG 0.617017 5_1:-42643297 Msa0731580:three_prime_UTR
ACCAACCATTAAATGGGACA+AGG 0.627155 5_1:-42644244 Msa0731580:CDS
CACTTTGCAAGATCCATCTG+AGG 0.628755 5_1:-42643783 Msa0731580:intron
TAAGCATCTTCCACTAACAA+TGG 0.635138 5_1:+42645113 None:intergenic
AGAAAACGAAGTGTGTTCCA+GGG 0.637437 5_1:-42644603 Msa0731580:CDS
ATTTCAGGGTAATAATGATG+AGG 0.638286 5_1:-42644807 Msa0731580:intron
CTTCCACTAACAATGGCTGT+GGG 0.639958 5_1:+42645120 None:intergenic
GACCCAAGAATTTGGTCAAG+GGG 0.641032 5_1:-42643564 Msa0731580:three_prime_UTR
ATTCTTGCCCATGATCAATG+AGG 0.645083 5_1:-42644762 Msa0731580:intron
CCGACCCAAGAATTTGGTCA+AGG 0.645146 5_1:-42643566 Msa0731580:three_prime_UTR
GAAGATGATAATGATCACAA+AGG 0.653543 5_1:-42645705 Msa0731580:CDS
CACGTGTGATTGTGAATGAG+AGG 0.660978 5_1:-42645851 Msa0731580:CDS
GAGCAACTAAAGTTAACGCG+TGG 0.664842 5_1:-42645683 Msa0731580:CDS
GAAAACGAAGTGTGTTCCAG+GGG 0.667596 5_1:-42644602 Msa0731580:CDS
CCAACCATTAAATGGGACAA+GGG 0.680428 5_1:-42644243 Msa0731580:CDS
CAAAACTAAAGCTAACACAA+GGG 0.690741 5_1:-42644287 Msa0731580:CDS
TAGTGGAAGATGCTTAGACA+AGG 0.695626 5_1:-42645106 Msa0731580:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATTCCATTAATAAAT+TGG - chr5_1:42645090-42645109 Msa0731580:intron 10.0%
!!! TAATTTTTATAAAGTTAGTA+AGG + chr5_1:42645260-42645279 None:intergenic 10.0%
!! AATAAAAATGTTAATATATG+TGG + chr5_1:42645298-42645317 None:intergenic 10.0%
!!! TTCATTTAAATTTTGTATAT+AGG - chr5_1:42645547-42645566 Msa0731580:intron 10.0%
!!! TTCCATAATTTTAATTTTTA+GGG - chr5_1:42645749-42645768 Msa0731580:CDS 10.0%
!! AAATAATGTACAATACAAAT+GGG - chr5_1:42643881-42643900 Msa0731580:intron 15.0%
!! ATTTCATCTATTATTATTTC+AGG - chr5_1:42644417-42644436 Msa0731580:intron 15.0%
!! TTTCATCTATTATTATTTCA+GGG - chr5_1:42644418-42644437 Msa0731580:intron 15.0%
!!! TTTAAAGTATTTCTATACTT+AGG - chr5_1:42644756-42644775 Msa0731580:intron 15.0%
!!! ATTTTGTTTTATTTAGAGTT+GGG - chr5_1:42644887-42644906 Msa0731580:intron 15.0%
!! TATTTGTACCAATTTATTAA+TGG + chr5_1:42645101-42645120 None:intergenic 15.0%
!! AATTTGGATATGAATAATAT+AGG - chr5_1:42645363-42645382 Msa0731580:CDS 15.0%
!!! TTTAAATTTTGTATATAGGT+TGG - chr5_1:42645551-42645570 Msa0731580:intron 15.0%
!!! GTTCCATAATTTTAATTTTT+AGG - chr5_1:42645748-42645767 Msa0731580:CDS 15.0%
!! GTTATGATTCTAAATTATGT+CGG - chr5_1:42643697-42643716 Msa0731580:intron 20.0%
!! CAAATAATGTACAATACAAA+TGG - chr5_1:42643880-42643899 Msa0731580:intron 20.0%
!! ATGGTGTAACTAAAAAAATT+TGG + chr5_1:42644532-42644551 None:intergenic 20.0%
!! AAATAAAATAAATTAGGCAC+AGG + chr5_1:42644577-42644596 None:intergenic 20.0%
!!! ATAACAAAGTTTCTAAAACA+TGG - chr5_1:42644860-42644879 Msa0731580:intron 20.0%
!!! CATTTTGTTTTATTTAGAGT+TGG - chr5_1:42644886-42644905 Msa0731580:intron 20.0%
!! AATGTATTTCCAATCTATAT+TGG - chr5_1:42645189-42645208 Msa0731580:intron 20.0%
!!! TATTTCCTATTTTCAAACAA+GGG + chr5_1:42645716-42645735 None:intergenic 20.0%
!! GTCCCTAAAAATTAAAATTA+TGG + chr5_1:42645754-42645773 None:intergenic 20.0%
!!! TTTTTGGTGTGTAAGTAATA+AGG + chr5_1:42643662-42643681 None:intergenic 25.0%
! GCAAGTTAGAATTATGATTA+CGG - chr5_1:42643774-42643793 Msa0731580:intron 25.0%
!! ATAGTTTTTCTTGACTATGA+TGG - chr5_1:42643913-42643932 Msa0731580:intron 25.0%
! GTGTAACTAAAAAAATTTGG+TGG + chr5_1:42644529-42644548 None:intergenic 25.0%
! TTTATTTGTATATTTGGGTC+AGG - chr5_1:42644595-42644614 Msa0731580:CDS 25.0%
! ATAAAACACGTTAATGATGA+TGG - chr5_1:42644804-42644823 Msa0731580:intron 25.0%
! TAAAACACGTTAATGATGAT+GGG - chr5_1:42644805-42644824 Msa0731580:intron 25.0%
! AGGAATCTATAAATGAGTTT+AGG - chr5_1:42645641-42645660 Msa0731580:CDS 25.0%
! GGAATCTATAAATGAGTTTA+GGG - chr5_1:42645642-42645661 Msa0731580:CDS 25.0%
!! CTATTTCCTATTTTCAAACA+AGG + chr5_1:42645717-42645736 None:intergenic 25.0%
! AGAAGAAAAGAGAATCTATT+TGG + chr5_1:42645785-42645804 None:intergenic 25.0%
! TTATACACTGAAACAAGAAA+AGG + chr5_1:42645811-42645830 None:intergenic 25.0%
AATGACTAACCAGAATATGT+TGG - chr5_1:42643359-42643378 Msa0731580:three_prime_UTR 30.0%
ATGACTAACCAGAATATGTT+GGG - chr5_1:42643360-42643379 Msa0731580:three_prime_UTR 30.0%
AACTTCAGTGTCTGAATTAA+TGG - chr5_1:42643458-42643477 Msa0731580:three_prime_UTR 30.0%
!! TCTGAATTAATGGCTTTGTT+TGG - chr5_1:42643468-42643487 Msa0731580:three_prime_UTR 30.0%
!! AATTAATGGCTTTGTTTGGT+GGG - chr5_1:42643472-42643491 Msa0731580:three_prime_UTR 30.0%
!!! TAATGAGATTGTTTTTGTGC+TGG + chr5_1:42643506-42643525 None:intergenic 30.0%
AAACAATCTCATTAAGCCTT+TGG - chr5_1:42643512-42643531 Msa0731580:three_prime_UTR 30.0%
TGATCATTATCATCTTCCAA+AGG + chr5_1:42643531-42643550 None:intergenic 30.0%
! GAAGATGATAATGATCACAA+AGG - chr5_1:42643534-42643553 Msa0731580:three_prime_UTR 30.0%
!!! CTAGTCAAACAGTCTTTTTT+TGG + chr5_1:42643678-42643697 None:intergenic 30.0%
TGCTATACTACAGATAAATG+TGG + chr5_1:42643723-42643742 None:intergenic 30.0%
GTTAGAATTATGATTACGGT+TGG - chr5_1:42643778-42643797 Msa0731580:intron 30.0%
TAAAGCCTACATGAGTAAAA+AGG - chr5_1:42643966-42643985 Msa0731580:intron 30.0%
! ACAAACCTTTTTACTCATGT+AGG + chr5_1:42643974-42643993 None:intergenic 30.0%
! TTTTCACTAACGTTTGATTC+TGG - chr5_1:42644000-42644019 Msa0731580:intron 30.0%
!! TGTAGCTATTTAGCTTTGTA+AGG - chr5_1:42644251-42644270 Msa0731580:CDS 30.0%
ATATTAAGGGTCCAACAAAT+AGG - chr5_1:42644311-42644330 Msa0731580:CDS 30.0%
ATTTCAGGGTAATAATGATG+AGG - chr5_1:42644432-42644451 Msa0731580:intron 30.0%
!!! CTTGTGTTAGCTTTAGTTTT+GGG + chr5_1:42644953-42644972 None:intergenic 30.0%
CAAAACTAAAGCTAACACAA+GGG - chr5_1:42644952-42644971 Msa0731580:CDS 30.0%
AAATTCGACCAACCATTAAA+TGG - chr5_1:42644988-42645007 Msa0731580:intron 30.0%
AATTCGACCAACCATTAAAT+GGG - chr5_1:42644989-42645008 Msa0731580:intron 30.0%
! TAATATAGGTTTTGCGCAAT+AGG - chr5_1:42645377-42645396 Msa0731580:CDS 30.0%
! AATATAGGTTTTGCGCAATA+GGG - chr5_1:42645378-42645397 Msa0731580:CDS 30.0%
!! TATAGGTTGGACAATTTTTG+CGG - chr5_1:42645564-42645583 Msa0731580:intron 30.0%
TTTATGCCTCATTTGCAATA+TGG - chr5_1:42645889-42645908 Msa0731580:exon 30.0%
TTATGCCTCATTTGCAATAT+GGG - chr5_1:42645890-42645909 Msa0731580:exon 30.0%
TATTGTACTTAATGTACGTG+TGG - chr5_1:42645942-42645961 Msa0731580:five_prime_UTR 30.0%
!!! AGAGCTTTTCAAGTTGAAAT+TGG + chr5_1:42645995-42646014 None:intergenic 30.0%
ATAGAGAAGAACAGAGAGAT+GGG + chr5_1:42643253-42643272 None:intergenic 35.0%
AGAAGAAGAACAAAGAGAGA+GGG + chr5_1:42643280-42643299 None:intergenic 35.0%
GATTGTGAATGAGAGGTTAA+TGG - chr5_1:42643395-42643414 Msa0731580:three_prime_UTR 35.0%
AATTCAGACACTGAAGTTCT+TGG + chr5_1:42643456-42643475 None:intergenic 35.0%
!! GAATTAATGGCTTTGTTTGG+TGG - chr5_1:42643471-42643490 Msa0731580:three_prime_UTR 35.0%
AAAATCGTGACCAAACTCAT+TGG - chr5_1:42643628-42643647 Msa0731580:CDS 35.0%
TTGAACATGTTCAAAGCAGA+AGG + chr5_1:42643859-42643878 None:intergenic 35.0%
TATCTGGATCTGCTACAATT+GGG + chr5_1:42643948-42643967 None:intergenic 35.0%
TTATCTGGATCTGCTACAAT+TGG + chr5_1:42643949-42643968 None:intergenic 35.0%
! TTACTCATGTAGGCTTTATC+TGG + chr5_1:42643964-42643983 None:intergenic 35.0%
TTAGATGAGAGTGACATTGA+AGG - chr5_1:42644079-42644098 Msa0731580:intron 35.0%
TAAGCATCTTCCACTAACAA+TGG + chr5_1:42644129-42644148 None:intergenic 35.0%
!! GCTATTTAGCTTTGTAAGGT+TGG - chr5_1:42644255-42644274 Msa0731580:CDS 35.0%
TTGGCTGAATTATACTATGC+TGG - chr5_1:42644274-42644293 Msa0731580:CDS 35.0%
TTAGTGCTTCTCCTATTTGT+TGG + chr5_1:42644325-42644344 None:intergenic 35.0%
CTCTATCCAAATTATTGCGA+CGG - chr5_1:42644363-42644382 Msa0731580:intron 35.0%
TAATCTCCGTCGCAATAATT+TGG + chr5_1:42644372-42644391 None:intergenic 35.0%
TTAGTTACACCATTCCCATT+AGG - chr5_1:42644539-42644558 Msa0731580:intron 35.0%
GGTAAAATCCCATACCTAAT+GGG + chr5_1:42644556-42644575 None:intergenic 35.0%
AGGTAAAATCCCATACCTAA+TGG + chr5_1:42644557-42644576 None:intergenic 35.0%
TCAGGTTTATAAGATCTTGG+TGG - chr5_1:42644613-42644632 Msa0731580:CDS 35.0%
!!! CCTTGTGTTAGCTTTAGTTT+TGG + chr5_1:42644954-42644973 None:intergenic 35.0%
CCAAAACTAAAGCTAACACA+AGG - chr5_1:42644951-42644970 Msa0731580:CDS 35.0%
! GAATTTTTGCTAGAGTCACT+TGG - chr5_1:42645029-42645048 Msa0731580:intron 35.0%
!! TACCTTGAAAGCATCTTCAT+CGG + chr5_1:42645226-42645245 None:intergenic 35.0%
! GCTATGCTAACTTGTCAATT+TGG - chr5_1:42645347-42645366 Msa0731580:CDS 35.0%
! ATATAGGTTTTGCGCAATAG+GGG - chr5_1:42645379-42645398 Msa0731580:CDS 35.0%
CTTGAATTTCTTACCTCAGA+TGG + chr5_1:42645472-42645491 None:intergenic 35.0%
AATGTCCCATATTGCAAATG+AGG + chr5_1:42645898-42645917 None:intergenic 35.0%
GATAGAGAAGAACAGAGAGA+TGG + chr5_1:42643254-42643273 None:intergenic 40.0%
GAGAAGAAGAACAAAGAGAG+AGG + chr5_1:42643281-42643300 None:intergenic 40.0%
GTGACTTTCCCAACATATTC+TGG + chr5_1:42643371-42643390 None:intergenic 40.0%
!! ACGATTTTCTGATTCGTGTC+TGG + chr5_1:42643616-42643635 None:intergenic 40.0%
ACAGACAAATGTGACTGATG+AGG - chr5_1:42643745-42643764 Msa0731580:intron 40.0%
ACATGTTCAAAGCAGAAGGA+TGG + chr5_1:42643855-42643874 None:intergenic 40.0%
ATCTGGATCTGCTACAATTG+GGG + chr5_1:42643947-42643966 None:intergenic 40.0%
TAGTGGAAGATGCTTAGACA+AGG - chr5_1:42644133-42644152 Msa0731580:intron 40.0%
TTATACTATGCTGGAAGCCA+TGG - chr5_1:42644283-42644302 Msa0731580:CDS 40.0%
TATACTATGCTGGAAGCCAT+GGG - chr5_1:42644284-42644303 Msa0731580:CDS 40.0%
AAGCCATGGGATGGATATTA+AGG - chr5_1:42644297-42644316 Msa0731580:CDS 40.0%
AGCCATGGGATGGATATTAA+GGG - chr5_1:42644298-42644317 Msa0731580:CDS 40.0%
ATTCTTGCCCATGATCAATG+AGG - chr5_1:42644477-42644496 Msa0731580:intron 40.0%
CTACGAACCTCATTGATCAT+GGG + chr5_1:42644487-42644506 None:intergenic 40.0%
TACACCATTCCCATTAGGTA+TGG - chr5_1:42644544-42644563 Msa0731580:CDS 40.0%
ACACCATTCCCATTAGGTAT+GGG - chr5_1:42644545-42644564 Msa0731580:CDS 40.0%
AATCCCATACCTAATGGGAA+TGG + chr5_1:42644551-42644570 None:intergenic 40.0%
GGGTCAGGTTTATAAGATCT+TGG - chr5_1:42644610-42644629 Msa0731580:CDS 40.0%
AGAAAACGAAGTGTGTTCCA+GGG - chr5_1:42644636-42644655 Msa0731580:intron 40.0%
! TTTTCGCAACGTTGACGAAA+AGG - chr5_1:42644697-42644716 Msa0731580:intron 40.0%
CGTTGACGAAAAGGTAACAA+TGG - chr5_1:42644706-42644725 Msa0731580:intron 40.0%
! TATTTAGAGTTGGGCACCAT+TGG - chr5_1:42644896-42644915 Msa0731580:intron 40.0%
AAGCTTACTTGTTCAGCCAA+TGG + chr5_1:42644915-42644934 None:intergenic 40.0%
! AACACAAGGGAGAAAAGTGT+TGG - chr5_1:42644965-42644984 Msa0731580:CDS 40.0%
ACCAACCATTAAATGGGACA+AGG - chr5_1:42644995-42645014 Msa0731580:intron 40.0%
CCAACCATTAAATGGGACAA+GGG - chr5_1:42644996-42645015 Msa0731580:intron 40.0%
CATTAAATGGGACAAGGGAA+GGG - chr5_1:42645001-42645020 Msa0731580:intron 40.0%
CGATCGTCACCAATATAGAT+TGG + chr5_1:42645201-42645220 None:intergenic 40.0%
AACCGATGAAGATGCTTTCA+AGG - chr5_1:42645221-42645240 Msa0731580:intron 40.0%
! TGGACAATTTTTGCGGCATT+TGG - chr5_1:42645571-42645590 Msa0731580:intron 40.0%
! ACAATTTTTGCGGCATTTGG+TGG - chr5_1:42645574-42645593 Msa0731580:intron 40.0%
TACCCCTTGACCAAATTCTT+GGG + chr5_1:42645680-42645699 None:intergenic 40.0%
! GGCATCCCTTGTTTGAAAAT+AGG - chr5_1:42645708-42645727 Msa0731580:CDS 40.0%
CACGTGTGATTGTGAATGAG+AGG - chr5_1:42643388-42643407 Msa0731580:three_prime_UTR 45.0%
!!! GCTTTGTTTGGTGGGCTTTT+AGG - chr5_1:42643480-42643499 Msa0731580:three_prime_UTR 45.0%
GAGCAACTAAAGTTAACGCG+TGG - chr5_1:42643556-42643575 Msa0731580:three_prime_UTR 45.0%
AGTAGGAGAAGAAGCTCTCA+TGG + chr5_1:42643589-42643608 None:intergenic 45.0%
GGCTTACAGTCCAATGAGTT+TGG + chr5_1:42643641-42643660 None:intergenic 45.0%
TTTCCCACAGCCATTGTTAG+TGG - chr5_1:42644116-42644135 Msa0731580:intron 45.0%
CTTCCACTAACAATGGCTGT+GGG + chr5_1:42644122-42644141 None:intergenic 45.0%
TCTTCCACTAACAATGGCTG+TGG + chr5_1:42644123-42644142 None:intergenic 45.0%
GACCCTTAATATCCATCCCA+TGG + chr5_1:42644303-42644322 None:intergenic 45.0%
ATGGGCAAGAATTCACTAGC+AGG + chr5_1:42644469-42644488 None:intergenic 45.0%
GCTACGAACCTCATTGATCA+TGG + chr5_1:42644488-42644507 None:intergenic 45.0%
GAGAAAACGAAGTGTGTTCC+AGG - chr5_1:42644635-42644654 Msa0731580:intron 45.0%
GAAAACGAAGTGTGTTCCAG+GGG - chr5_1:42644637-42644656 Msa0731580:intron 45.0%
! TTATTTTCCACCATAGCCCC+TGG + chr5_1:42644656-42644675 None:intergenic 45.0%
CCCTTGTCCCATTTAATGGT+TGG + chr5_1:42644999-42645018 None:intergenic 45.0%
CCTTCCCTTGTCCCATTTAA+TGG + chr5_1:42645003-42645022 None:intergenic 45.0%
CCATTAAATGGGACAAGGGA+AGG - chr5_1:42645000-42645019 Msa0731580:intron 45.0%
ATACAAGAATCCCACACCCT+TGG + chr5_1:42645405-42645424 None:intergenic 45.0%
CACTTTGCAAGATCCATCTG+AGG - chr5_1:42645456-42645475 Msa0731580:intron 45.0%
!! TTTTGCGGCATTTGGTGGAT+TGG - chr5_1:42645579-42645598 Msa0731580:intron 45.0%
CTCACAAGTTGTAGAGAGCT+AGG - chr5_1:42645621-42645640 Msa0731580:CDS 45.0%
TTGACACCGACCCAAGAATT+TGG - chr5_1:42645667-42645686 Msa0731580:CDS 45.0%
CCTTGACCAAATTCTTGGGT+CGG + chr5_1:42645676-42645695 None:intergenic 45.0%
CGACCCAAGAATTTGGTCAA+GGG - chr5_1:42645674-42645693 Msa0731580:CDS 45.0%
GACCCAAGAATTTGGTCAAG+GGG - chr5_1:42645675-42645694 Msa0731580:CDS 45.0%
CTACCCCTTGACCAAATTCT+TGG + chr5_1:42645681-42645700 None:intergenic 45.0%
TGGTCAAGGGGTAGTTCAAA+TGG - chr5_1:42645687-42645706 Msa0731580:CDS 45.0%
!!! TTTTTTCTATATAATTAATT+TGG - chr5_1:42644207-42644226 Msa0731580:intron 5.0%
!! CAAATAAAATAAAATAAATT+AGG + chr5_1:42644583-42644602 None:intergenic 5.0%
!!! TTTTATTTTATTTGTATATT+TGG - chr5_1:42644589-42644608 Msa0731580:CDS 5.0%
!!! TTTATTTTATTTGTATATTT+GGG - chr5_1:42644590-42644609 Msa0731580:CDS 5.0%
!!! TATTTTATTTTTTAATTTCT+AGG - chr5_1:42645150-42645169 Msa0731580:CDS 5.0%
! GATTCGTGTCTGGTTCGAGT+AGG + chr5_1:42643606-42643625 None:intergenic 50.0%
! TTTTGCGCAATAGGGGCCAA+GGG - chr5_1:42645386-42645405 Msa0731580:CDS 50.0%
CCGACCCAAGAATTTGGTCA+AGG - chr5_1:42645673-42645692 Msa0731580:CDS 50.0%
CTATGCTGGAAGCCATGGGA+TGG - chr5_1:42644288-42644307 Msa0731580:CDS 55.0%
GAAGTGTGTTCCAGGGGCTA+TGG - chr5_1:42644643-42644662 Msa0731580:intron 55.0%
! GTTTTGCGCAATAGGGGCCA+AGG - chr5_1:42645385-42645404 Msa0731580:CDS 55.0%
CACACGTTTGCATGCGCATG+CGG - chr5_1:42645848-42645867 Msa0731580:CDS 55.0%
GTGTGTTCCAGGGGCTATGG+TGG - chr5_1:42644646-42644665 Msa0731580:intron 60.0%
! GCAATAGGGGCCAAGGGTGT+GGG - chr5_1:42645392-42645411 Msa0731580:CDS 60.0%
CGCAATAGGGGCCAAGGGTG+TGG - chr5_1:42645391-42645410 Msa0731580:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 42643244 42646017 42643244 ID=Msa0731580;Name=Msa0731580
chr5_1 mRNA 42643244 42646017 42643244 ID=Msa0731580-mRNA-1;Parent=Msa0731580;Name=Msa0731580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=116|1|1|1|1|1|10|383|379
chr5_1 exon 42643244 42643692 42643244 ID=Msa0731580-mRNA-1:exon:12291;Parent=Msa0731580-mRNA-1
chr5_1 exon 42643784 42643876 42643784 ID=Msa0731580-mRNA-1:exon:12290;Parent=Msa0731580-mRNA-1
chr5_1 exon 42644019 42644089 42644019 ID=Msa0731580-mRNA-1:exon:12289;Parent=Msa0731580-mRNA-1
chr5_1 exon 42644211 42644358 42644211 ID=Msa0731580-mRNA-1:exon:12288;Parent=Msa0731580-mRNA-1
chr5_1 exon 42644543 42644644 42644543 ID=Msa0731580-mRNA-1:exon:12287;Parent=Msa0731580-mRNA-1
chr5_1 exon 42644763 42644822 42644763 ID=Msa0731580-mRNA-1:exon:12286;Parent=Msa0731580-mRNA-1
chr5_1 exon 42644913 42645005 42644913 ID=Msa0731580-mRNA-1:exon:12285;Parent=Msa0731580-mRNA-1
chr5_1 exon 42645107 42645178 42645107 ID=Msa0731580-mRNA-1:exon:12284;Parent=Msa0731580-mRNA-1
chr5_1 exon 42645274 42645414 42645274 ID=Msa0731580-mRNA-1:exon:12283;Parent=Msa0731580-mRNA-1
chr5_1 exon 42645608 42646017 42645608 ID=Msa0731580-mRNA-1:exon:12282;Parent=Msa0731580-mRNA-1
chr5_1 five_prime_UTR 42645902 42646017 42645902 ID=Msa0731580-mRNA-1:five_prime_utr;Parent=Msa0731580-mRNA-1
chr5_1 CDS 42645608 42645901 42645608 ID=Msa0731580-mRNA-1:cds;Parent=Msa0731580-mRNA-1
chr5_1 CDS 42645274 42645414 42645274 ID=Msa0731580-mRNA-1:cds;Parent=Msa0731580-mRNA-1
chr5_1 CDS 42645107 42645178 42645107 ID=Msa0731580-mRNA-1:cds;Parent=Msa0731580-mRNA-1
chr5_1 CDS 42644913 42645005 42644913 ID=Msa0731580-mRNA-1:cds;Parent=Msa0731580-mRNA-1
chr5_1 CDS 42644763 42644822 42644763 ID=Msa0731580-mRNA-1:cds;Parent=Msa0731580-mRNA-1
chr5_1 CDS 42644543 42644644 42644543 ID=Msa0731580-mRNA-1:cds;Parent=Msa0731580-mRNA-1
chr5_1 CDS 42644211 42644358 42644211 ID=Msa0731580-mRNA-1:cds;Parent=Msa0731580-mRNA-1
chr5_1 CDS 42644019 42644089 42644019 ID=Msa0731580-mRNA-1:cds;Parent=Msa0731580-mRNA-1
chr5_1 CDS 42643784 42643876 42643784 ID=Msa0731580-mRNA-1:cds;Parent=Msa0731580-mRNA-1
chr5_1 CDS 42643627 42643692 42643627 ID=Msa0731580-mRNA-1:cds;Parent=Msa0731580-mRNA-1
chr5_1 three_prime_UTR 42643244 42643626 42643244 ID=Msa0731580-mRNA-1:three_prime_utr;Parent=Msa0731580-mRNA-1
Gene Sequence

>Msa0731580

ATGACTAACCAGAATATGTTGGGAAAGTCACGTGTGATTGTGAATGAGAGGTTAATGGAGTTAGCAATGTCTATTTCAAACTCTAATGTTTTACCAAGAACTTCAGTGTCTGAATTAATGGCTTTGTTTGGTGGGCTTTTAGGCCAGCACAAAAACAATCTCATTAAGCCTTTGGAAGATGATAATGATCACAAAGGAGCAACTAAAGTTAACGCGTGGATCGATTCCATGAGAGCTTCTTCTCCTACTCGAACCAGACACGAATCAGAAAATCGTGACCAAACTCATTGGACTCTTTTCCATCCTTCTGCTTTGAACATGTTCAATCAAATAATGTACAATACAAATGGGAAACAAATTATAGTTTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTAGCAGATCCAGATAAAGCCTACATGAGTAAAAAGATGAGAGTGACATTGAAGGACATAGCAAGACATTTTCCCACAGCCATTGTTAGTGGAAGATGCTTAGACAAGCTATTTAGCTTTGTAAGGTTGGCTGAATTATACTATGCTGGAAGCCATGGGATGGATATTAAGGGTCCAACAAATAGGAGAAGCACTAAAAAAGGTAATAATGATGAGGTACTTTTGCAGCCTGCTAGTGAATTCTTGCCCATGATCAATGAGGTTTATAAGATCTTGGTGGAGAAAACGAAGTGTGTTCCAGGGGCTATGGTGGAAAATAACAAATTTTGTTTGTCTGTACATTTTCGCAACGTTGACGAAAAGAGTTGGGCACCATTGGCTGAACAAGTAAGCTTAGTGCTGAATGATTACCCAAAACTAAAGCTAACACAAGGGAGAAAAGTGTTGGAAATTCGACCAACCATTAAATGGGACAAGGGAAGGGCTCTTGAATTTTTGCTAGAGTCACTTGGATTTGCAAATTCTAAGAATGTATTTCCAATCTATATTGGTGACGATCGAACCGATGAAGATGCTTTCAAGGTTTTGCGCAATAGGGGCCAAGGGTGTGGGATTCTTGTATCTAAAATTTCAAAAGAAACTAATGCTTCTTACACTTTGCAAGATCCATCTGAGGTTGGACAATTTTTGCGGCATTTGGTGGATTGGAAAAGAACAAGTTCTCGTTCTCACAAGTTGTAG

Protein sequence

>Msa0731580

MTNQNMLGKSRVIVNERLMELAMSISNSNVLPRTSVSELMALFGGLLGQHKNNLIKPLEDDNDHKGATKVNAWIDSMRASSPTRTRHESENRDQTHWTLFHPSALNMFNQIMYNTNGKQIIVFLDYDGTLSPIVADPDKAYMSKKMRVTLKDIARHFPTAIVSGRCLDKLFSFVRLAELYYAGSHGMDIKGPTNRRSTKKGNNDEVLLQPASEFLPMINEVYKILVEKTKCVPGAMVENNKFCLSVHFRNVDEKSWAPLAEQVSLVLNDYPKLKLTQGRKVLEIRPTIKWDKGRALEFLLESLGFANSKNVFPIYIGDDRTDEDAFKVLRNRGQGCGILVSKISKETNASYTLQDPSEVGQFLRHLVDWKRTSSRSHKL*