AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001550 MtrunA17_Chr3g0145941 97.452 314 7 1 1 313 1 314 0.0 626
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001550 AT5G17670.1 68.070 285 84 4 30 313 31 309 9.01e-137 390

Find 268 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGATGTTTGCTTTATT+TGG 0.069780 1_1:+3227211 None:intergenic
TTTCATTCTTCTTGTATTTA+TGG 0.097227 1_1:-3227934 Msa0001550:three_prime_UTR
GAAGATAGTTCAATGGTATT+TGG 0.154350 1_1:+3226137 None:intergenic
GTCTGTATATGCAGCAATTT+GGG 0.178912 1_1:-3228814 Msa0001550:CDS
GAATAAGGTTGGTATATATT+TGG 0.185131 1_1:-3226915 Msa0001550:three_prime_UTR
AGAGAAGGTCCTGTGGTTTC+AGG 0.187842 1_1:+3227271 None:intergenic
ATTTCTGAACTTCAGGATTT+AGG 0.200146 1_1:-3226651 Msa0001550:three_prime_UTR
GACCTATGTCCAACTGCTTT+TGG 0.239513 1_1:+3225883 None:intergenic
TGAAGAGCTTCCTTTCAATT+AGG 0.239569 1_1:+3227311 None:intergenic
CGTCTGTATATGCAGCAATT+TGG 0.240390 1_1:-3228815 Msa0001550:CDS
AAGAGTGCCACGCCAGTAAT+TGG 0.244199 1_1:+3228964 None:intergenic
AATATAATTTGAAAACTTTC+CGG 0.255806 1_1:+3225976 None:intergenic
CTACATATAGAATTATTTAT+TGG 0.259229 1_1:+3226552 None:intergenic
AATGGTATTTGGGAGATTAT+TGG 0.262024 1_1:+3226148 None:intergenic
GCCATTTATTTCTGAACTTC+AGG 0.262303 1_1:-3226658 Msa0001550:three_prime_UTR
CATTCACCTGCTTGTATCCT+TGG 0.277029 1_1:+3228308 None:intergenic
AAGATAGTTCAATGGTATTT+GGG 0.285064 1_1:+3226138 None:intergenic
TTTATGAGATTGAGAACTTT+TGG 0.309051 1_1:-3226764 Msa0001550:three_prime_UTR
ATAACACCAGGGACGCCTTT+TGG 0.317246 1_1:+3228740 None:intergenic
TCAGAGTTGCCTCCAGCTTC+TGG 0.320028 1_1:+3229068 None:intergenic
AATATATACCAACCTTATTC+TGG 0.329607 1_1:+3226918 None:intergenic
TTGGATTTGAGTTTCCAAAA+AGG 0.331624 1_1:+3228446 None:intergenic
TCATGATGTTTGCTTTATTT+GGG 0.333445 1_1:+3227212 None:intergenic
CTGGTTGGTATTGGTGCTTT+TGG 0.334919 1_1:+3227374 None:intergenic
CATCATGTCATTTGCCATCC+TGG 0.335506 1_1:-3227000 Msa0001550:three_prime_UTR
CTTTCTAATCTGTTTGCTAC+TGG 0.335586 1_1:-3227873 Msa0001550:three_prime_UTR
TATTTATTGAACCAGGGGTT+AGG 0.339291 1_1:-3229109 Msa0001550:intron
GAAGAGCTTCCTTTCAATTA+GGG 0.341579 1_1:+3227312 None:intergenic
AGAAAGAGAATGCAAAGAAA+TGG 0.345829 1_1:-3229349 Msa0001550:five_prime_UTR
ACATTGCGTGCTCGCTTTGT+TGG 0.348023 1_1:-3228331 Msa0001550:CDS
ATTGTTATTATGTTAGTAAT+AGG 0.349031 1_1:-3226448 Msa0001550:three_prime_UTR
AGTGAGCATTTGGATGGAAT+TGG 0.358570 1_1:+3229254 None:intergenic
CGATCAAACCAGCGGCATTT+CGG 0.365710 1_1:+3228990 None:intergenic
AGAAGAAGACAGTGAGCATT+TGG 0.366919 1_1:+3229244 None:intergenic
CTAGACATTGCATATTTAGA+AGG 0.367035 1_1:+3226873 None:intergenic
GGAAGTGCAGGCTCAGCATT+TGG 0.368790 1_1:+3228427 None:intergenic
TCCTGAAGTTCAGAAATAAA+TGG 0.369324 1_1:+3226657 None:intergenic
ATATCATTGTTATTAACTCT+TGG 0.371502 1_1:-3228782 Msa0001550:CDS
GTTTGATCGATCCCAATTAC+TGG 0.372683 1_1:-3228976 Msa0001550:CDS
AGTTAATAACAATGATATAT+TGG 0.374538 1_1:+3228787 None:intergenic
ATGTCACACTCACCAGAATA+AGG 0.382491 1_1:-3226930 Msa0001550:three_prime_UTR
CATATTTATATGTTAAGTTC+TGG 0.383673 1_1:-3226506 Msa0001550:three_prime_UTR
TTTGTGGGCAAGCAGATGTA+TGG 0.392192 1_1:-3228167 Msa0001550:CDS
CGGTGCAACATGAGAATAAC+AGG 0.392540 1_1:+3226029 None:intergenic
CGTGCACATATGGCAGATCT+TGG 0.394412 1_1:+3227513 None:intergenic
AACCAACGCCTGTCCTTGAT+TGG 0.395983 1_1:-3228940 Msa0001550:CDS
ATCCATTGTTCCAACACATC+AGG 0.397261 1_1:+3228024 None:intergenic
TAATAATTTCTCAGGTTTGT+GGG 0.400581 1_1:-3228182 Msa0001550:intron
TTGACTTTAAAACAAATTGC+GGG 0.400742 1_1:-3227718 Msa0001550:three_prime_UTR
CTTGGAATTGGTGTCTTTGT+TGG 0.403998 1_1:-3226600 Msa0001550:three_prime_UTR
CGAGCACGCAATGTTATGTT+GGG 0.408081 1_1:+3228340 None:intergenic
TAGGGAAAGAGACAACAAAT+TGG 0.408863 1_1:-3226802 Msa0001550:three_prime_UTR
ATAACCGGATGATGGAGTTC+TGG 0.411644 1_1:+3227181 None:intergenic
CAGTCTCCTCGGGAAGTAGC+TGG 0.414848 1_1:+3228392 None:intergenic
TACATAAACTGAAAGGGAAA+AGG 0.415287 1_1:-3226354 Msa0001550:three_prime_UTR
AATTAGGGAGCCAATGTAAA+GGG 0.416529 1_1:+3227327 None:intergenic
TGTTAACTTGTGGAGCAAAA+TGG 0.418912 1_1:-3229289 Msa0001550:CDS
GAAAGAGAATGCAAAGAAAT+GGG 0.419006 1_1:-3229348 Msa0001550:five_prime_UTR
CATATGGCAGATCTTGGAAT+TGG 0.419770 1_1:+3227519 None:intergenic
TTGAGGTGAGGGGTGTAAAC+AGG 0.422172 1_1:+3228668 None:intergenic
TCAAGATGAGCTGATACTTC+TGG 0.423594 1_1:+3228129 None:intergenic
ACTAGAATATTGTGCTATCA+TGG 0.423994 1_1:-3226077 Msa0001550:three_prime_UTR
TTAAAAGCTCTGGTTGGTAT+TGG 0.428809 1_1:+3227365 None:intergenic
AGTGTTGTTTCGTGCACATA+TGG 0.429109 1_1:+3227503 None:intergenic
ATAATAATTTCTCAGGTTTG+TGG 0.429279 1_1:-3228183 Msa0001550:intron
TTTCCACTAGTGGATGGTAC+TGG 0.429481 1_1:+3227143 None:intergenic
TGTGGTCTTATTCAAGCAAT+AGG 0.433830 1_1:-3225860 Msa0001550:three_prime_UTR
ATTTATTGAACCAGGGGTTA+GGG 0.434184 1_1:-3229108 Msa0001550:intron
TGTACTATTGATACACACTA+TGG 0.439852 1_1:+3226195 None:intergenic
TCAAATTATATTACGTGCAT+AGG 0.440471 1_1:-3225965 Msa0001550:three_prime_UTR
CTATATGTAGTATAGTTCAT+TGG 0.440559 1_1:-3226539 Msa0001550:three_prime_UTR
CGGTGCACTTAACATTTCCC+TGG 0.441926 1_1:-3228106 Msa0001550:CDS
GAAGTATCAGCTCATCTTGA+CGG 0.443659 1_1:-3228126 Msa0001550:CDS
ATGGCAGAGCTCGCCTCACT+TGG 0.443745 1_1:+3227461 None:intergenic
CAGGGGTTAGGGAACAATTC+CGG 0.447536 1_1:-3229097 Msa0001550:CDS
ACTAGTGGATGGTACTGGTC+TGG 0.451671 1_1:+3227148 None:intergenic
TGTGGTTTCAGGTGTGAACT+TGG 0.456134 1_1:+3227282 None:intergenic
TGGGAGTGGTTTAAAAGCTC+TGG 0.459193 1_1:+3227355 None:intergenic
CTCAAGTATGTATGCATAGC+AGG 0.460049 1_1:-3228650 Msa0001550:CDS
ATGACATCATCTGAACCAAC+CGG 0.461617 1_1:+3228066 None:intergenic
GGTGACAATGACGTTTCCTT+TGG 0.465904 1_1:-3227562 Msa0001550:three_prime_UTR
CCACCTCCAAAAGGCGTCCC+TGG 0.469313 1_1:-3228746 Msa0001550:CDS
GCGGCATTTCGGAGCCAATC+AGG 0.471608 1_1:+3229001 None:intergenic
ACAAAATGAAGGTATATTCA+AGG 0.471722 1_1:-3228475 Msa0001550:intron
CTCTCTTCAAATACCAATCA+AGG 0.471850 1_1:+3228927 None:intergenic
ATGGGTGGAGAGGAAGTAAA+GGG 0.472828 1_1:-3229330 Msa0001550:five_prime_UTR
GCGAGCACGCAATGTTATGT+TGG 0.473012 1_1:+3228339 None:intergenic
CGTGCTCGCTTTGTTGGCCA+AGG 0.474939 1_1:-3228325 Msa0001550:CDS
TTTCCAATTCCATTAACAAA+AGG 0.475914 1_1:-3226690 Msa0001550:three_prime_UTR
AGAGTGCCACGCCAGTAATT+GGG 0.476971 1_1:+3228965 None:intergenic
TCTGGTTTCGTCATAATAAC+CGG 0.477309 1_1:+3227166 None:intergenic
TTGGAGATAGAACTTGGAAT+TGG 0.478928 1_1:-3226612 Msa0001550:three_prime_UTR
TACTTGTTGGAGATAGAACT+TGG 0.481501 1_1:-3226618 Msa0001550:three_prime_UTR
ACATAAACTGAAAGGGAAAA+GGG 0.484897 1_1:-3226353 Msa0001550:three_prime_UTR
AGGTCAACATAGGTGGTGGA+TGG 0.489246 1_1:+3227616 None:intergenic
GAGACCACTCTATCATTGAT+TGG 0.491581 1_1:-3228863 Msa0001550:CDS
GCAAACAGATTAGAAAGGCC+AGG 0.491688 1_1:+3227879 None:intergenic
GTCAACATAGGTGGTGGATG+GGG 0.492035 1_1:+3227618 None:intergenic
CATCTTCAAGCTAATTAAAG+AGG 0.492324 1_1:+3227995 None:intergenic
TCCCACTTCTCCCTTTACAT+TGG 0.494088 1_1:-3227337 Msa0001550:three_prime_UTR
TCATTGATTGGTCACTCGGC+TGG 0.494886 1_1:-3228851 Msa0001550:CDS
GGTTATAGTAATCGTGTTTG+AGG 0.495157 1_1:+3227236 None:intergenic
TGCTACTGGTATGTCTATAG+AGG 0.497405 1_1:-3227859 Msa0001550:three_prime_UTR
GATTGGCTCCGAAATGCCGC+TGG 0.497694 1_1:-3228998 Msa0001550:CDS
AGGGAAGCTTTCACTTCCCA+TGG 0.498417 1_1:-3226739 Msa0001550:three_prime_UTR
CACCTCATTGTTGCATTGTG+TGG 0.500114 1_1:+3227074 None:intergenic
ATCACAAAGCAATATTTCCC+TGG 0.502138 1_1:-3227897 Msa0001550:three_prime_UTR
GACGGCGGGCCGATAGTTGT+TGG 0.503129 1_1:+3229208 None:intergenic
GAAGTATCTGTAGGAAGTGC+AGG 0.505483 1_1:+3228415 None:intergenic
AATGGGTGGAGAGGAAGTAA+AGG 0.506529 1_1:-3229331 Msa0001550:five_prime_UTR
GGGAGTGGTAAACTCCATCC+AGG 0.507069 1_1:+3228088 None:intergenic
CTCAGGAGGTGCTAACTCCA+TGG 0.507697 1_1:+3228883 None:intergenic
TATGTAGTGAAGCAAGAGCC+AGG 0.508115 1_1:+3226982 None:intergenic
GGTCAACATAGGTGGTGGAT+GGG 0.508485 1_1:+3227617 None:intergenic
GGAATTGGTGTCTTTGTTGG+AGG 0.508876 1_1:-3226597 Msa0001550:three_prime_UTR
TTTGACTTTAAAACAAATTG+CGG 0.509309 1_1:-3227719 Msa0001550:three_prime_UTR
GGGGAAGGACGAGCGAGAGA+GGG 0.510533 1_1:+3227638 None:intergenic
TCATAGGTCAACATAGGTGG+TGG 0.511524 1_1:+3227612 None:intergenic
GGTCGGGTTATTGATACCAT+TGG 0.515490 1_1:-3227583 Msa0001550:three_prime_UTR
TGGTTGGTTTGGGAGAGACT+AGG 0.515590 1_1:-3226307 Msa0001550:three_prime_UTR
TTGATAATAGCAGTCTCCTC+GGG 0.515621 1_1:+3228382 None:intergenic
AGGTGCACGGGTATACTTGT+TGG 0.517740 1_1:-3226631 Msa0001550:three_prime_UTR
GCACTTAACATTTCCCTGGA+TGG 0.518025 1_1:-3228102 Msa0001550:CDS
TTGGTCACTCGGCTGGAGGA+TGG 0.518671 1_1:-3228844 Msa0001550:CDS
CTGGTGTTATCGATCAAACC+AGG 0.522198 1_1:-3228727 Msa0001550:CDS
ACTTGCTGATATTGTATATG+TGG 0.523747 1_1:-3226002 Msa0001550:three_prime_UTR
AATATTGTTGAACATAATCA+AGG 0.524897 1_1:+3228699 None:intergenic
CCAATCAGGTCTTGACACCT+TGG 0.525622 1_1:+3229015 None:intergenic
CAAAATGAAGGTATATTCAA+GGG 0.525750 1_1:-3228474 Msa0001550:intron
GAATGCATGTGGAGTTTCCA+TGG 0.526463 1_1:+3226722 None:intergenic
TCGGCCCGCCGTCATTCTCC+CGG 0.526986 1_1:-3229198 Msa0001550:intron
ATCAATGATAGAGTGGTCTC+AGG 0.527336 1_1:+3228866 None:intergenic
AGAATTATACATAAACTGAA+AGG 0.527502 1_1:-3226361 Msa0001550:three_prime_UTR
CCCCTGATGTGTTGGAACAA+TGG 0.527934 1_1:-3228026 Msa0001550:CDS
CAGGAGCCCGAGGTGTTGTG+TGG 0.528223 1_1:+3227426 None:intergenic
TACAATATCAGCAAGTATGC+CGG 0.529097 1_1:+3226009 None:intergenic
AGCCAATGTAAAGGGAGAAG+TGG 0.529925 1_1:+3227335 None:intergenic
TTGTGGGCAAGCAGATGTAT+GGG 0.530004 1_1:-3228166 Msa0001550:CDS
TCTATCATTGATTGGTCACT+CGG 0.533151 1_1:-3228855 Msa0001550:CDS
TTCAAATACCAATCAAGGAC+AGG 0.534115 1_1:+3228932 None:intergenic
CCACAGGACCTTCTCTATAA+CGG 0.536446 1_1:-3227264 Msa0001550:three_prime_UTR
TGATGTTTGCTTTATTTGGG+TGG 0.537376 1_1:+3227215 None:intergenic
CAAAGTGGAATGATGTAGGC+AGG 0.537556 1_1:+3227407 None:intergenic
CAATTAGGGAGCCAATGTAA+AGG 0.538764 1_1:+3227326 None:intergenic
CCTCATCATCCACCTCCAAA+AGG 0.539353 1_1:-3228755 Msa0001550:CDS
CTGCTTCCACCAACAACTAT+CGG 0.539905 1_1:-3229217 Msa0001550:CDS
TCCATTGTTCCAACACATCA+GGG 0.540776 1_1:+3228025 None:intergenic
AGGTCTTGCCGTTATAGAGA+AGG 0.542300 1_1:+3227256 None:intergenic
TTCCGGTGACTACCAGAAGC+TGG 0.544893 1_1:-3229080 Msa0001550:CDS
TGCATACATACTTGAGGTGA+GGG 0.545124 1_1:+3228657 None:intergenic
GTTTCAGGTGTGAACTTGGA+TGG 0.545358 1_1:+3227286 None:intergenic
AAATATTGAAGATAGTTCAA+TGG 0.545533 1_1:+3226130 None:intergenic
ATGCAAAGAAATGGGTGGAG+AGG 0.546001 1_1:-3229340 Msa0001550:five_prime_UTR
CTGTTATTCTCATGTTGCAC+CGG 0.546610 1_1:-3226028 Msa0001550:three_prime_UTR
GTATGGTTCCCCTGATGTGT+TGG 0.547140 1_1:-3228034 Msa0001550:CDS
TCGTCATAATAACCGGATGA+TGG 0.547892 1_1:+3227173 None:intergenic
CAAGCAGATGTATGGGGCGA+TGG 0.548229 1_1:-3228159 Msa0001550:CDS
TTTGATAATAGCAGTCTCCT+CGG 0.548689 1_1:+3228381 None:intergenic
CTGGTTTGATCGATAACACC+AGG 0.550685 1_1:+3228728 None:intergenic
CTCCAGCTTCTGGTAGTCAC+CGG 0.551919 1_1:+3229078 None:intergenic
TTGAACCCACACAACACCTC+GGG 0.552718 1_1:-3227432 Msa0001550:three_prime_UTR
CCAAGGTGTCAAGACCTGAT+TGG 0.553014 1_1:-3229015 Msa0001550:CDS
GAAGACAGTGAGCATTTGGA+TGG 0.553333 1_1:+3229248 None:intergenic
AAAGGGAAAAGGGAGGGCAT+TGG 0.553492 1_1:-3226343 Msa0001550:three_prime_UTR
AGGTCAAAGTGGAATGATGT+AGG 0.553939 1_1:+3227403 None:intergenic
TCAACATAGGTGGTGGATGG+GGG 0.558890 1_1:+3227619 None:intergenic
GGATGGAGTTTACCACTCCC+CGG 0.562006 1_1:-3228085 Msa0001550:CDS
GAATTATACATAAACTGAAA+GGG 0.565724 1_1:-3226360 Msa0001550:three_prime_UTR
ATTAATGTAACCACCTCTGT+TGG 0.567097 1_1:-3226226 Msa0001550:three_prime_UTR
GAGACTAACCGGGAGAATGA+CGG 0.567802 1_1:+3229190 None:intergenic
AGTCTCCTCGGGAAGTAGCT+GGG 0.569738 1_1:+3228393 None:intergenic
TAGAAAACTAACAAACCTCT+AGG 0.569758 1_1:+3226274 None:intergenic
AACATAATCAAGGAGACCCC+TGG 0.569925 1_1:+3228709 None:intergenic
ATCGATCCCAATTACTGGCG+TGG 0.571483 1_1:-3228971 Msa0001550:CDS
GGCGGGCCGATAGTTGTTGG+TGG 0.571827 1_1:+3229211 None:intergenic
CATCTGAACCAACCGGGGAG+TGG 0.574033 1_1:+3228073 None:intergenic
ACATTGGCTCCCTAATTGAA+AGG 0.574505 1_1:-3227321 Msa0001550:three_prime_UTR
ATGTTACGTCCAAAAGCAGT+TGG 0.574698 1_1:-3225892 Msa0001550:three_prime_UTR
AGTTGATGATGCTGTTCAAG+AGG 0.575707 1_1:-3228906 Msa0001550:CDS
GAAGGACGAGCGAGAGAGGG+AGG 0.575747 1_1:+3227641 None:intergenic
CGTGTCCACAGTTGTTGCCA+AGG 0.576292 1_1:-3229032 Msa0001550:CDS
ACTTCAGGATTTAGGTGCAC+GGG 0.577376 1_1:-3226643 Msa0001550:three_prime_UTR
CAGGATGGCAAATGACATGA+TGG 0.577562 1_1:+3227001 None:intergenic
ATAGACGGACGCATCTCCGC+TGG 0.578928 1_1:-3229385 None:intergenic
AGGAGCCCGAGGTGTTGTGT+GGG 0.579065 1_1:+3227427 None:intergenic
AACTTCAGGATTTAGGTGCA+CGG 0.579066 1_1:-3226644 Msa0001550:three_prime_UTR
GCCAATGTAAAGGGAGAAGT+GGG 0.579690 1_1:+3227336 None:intergenic
ACAACACTTTGAGTCAACAT+TGG 0.580572 1_1:-3227488 Msa0001550:three_prime_UTR
ATTGAACCCACACAACACCT+CGG 0.585451 1_1:-3227433 Msa0001550:three_prime_UTR
GGAGTTTACCACTCCCCGGT+TGG 0.585654 1_1:-3228081 Msa0001550:CDS
CACACTCACCAGAATAAGGT+TGG 0.586101 1_1:-3226926 Msa0001550:three_prime_UTR
TAGTGAAGCAAGAGCCAGGA+TGG 0.586200 1_1:+3226986 None:intergenic
AACTGCTATGTTACTGCTGT+AGG 0.588651 1_1:-3226389 Msa0001550:three_prime_UTR
GGAAAGAGACAACAAATTGG+AGG 0.589894 1_1:-3226799 Msa0001550:three_prime_UTR
CAGTAGCAAACAGATTAGAA+AGG 0.590323 1_1:+3227874 None:intergenic
TGACATCATCTGAACCAACC+GGG 0.591852 1_1:+3228067 None:intergenic
TGATGCTGTTCAAGAGGCCA+TGG 0.593740 1_1:-3228900 Msa0001550:CDS
GGTTATTCTGCCAACAGAGG+TGG 0.596111 1_1:+3226216 None:intergenic
TGTTGGCCAAGGATACAAGC+AGG 0.599233 1_1:-3228314 Msa0001550:intron
GGAAACGTCATTGTCACCAA+TGG 0.600949 1_1:+3227567 None:intergenic
GATGTCATTAGACCATGGTA+TGG 0.601444 1_1:-3228051 Msa0001550:CDS
TACCAATCAAGGACAGGCGT+TGG 0.602600 1_1:+3228938 None:intergenic
CGAGCAGTGATGTTAACTTG+TGG 0.605981 1_1:-3229299 Msa0001550:exon
TTGATTGGTCACTCGGCTGG+AGG 0.606373 1_1:-3228848 Msa0001550:CDS
CACAATGCAACAATGAGGTG+AGG 0.609573 1_1:-3227071 Msa0001550:three_prime_UTR
TGACACCTTGGCAACAACTG+TGG 0.611400 1_1:+3229027 None:intergenic
TTCTCAATCTCATAAAGTGT+AGG 0.612611 1_1:+3226771 None:intergenic
GTCCAAAAGCAGTTGGACAT+AGG 0.613324 1_1:-3225885 Msa0001550:three_prime_UTR
GACTTTAAAACAAATTGCGG+GGG 0.614576 1_1:-3227716 Msa0001550:three_prime_UTR
CTGCTATGCATACATACTTG+AGG 0.615240 1_1:+3228651 None:intergenic
TGACTTTAAAACAAATTGCG+GGG 0.616636 1_1:-3227717 Msa0001550:three_prime_UTR
ATGCATACATACTTGAGGTG+AGG 0.617128 1_1:+3228656 None:intergenic
AGAGAATGCAAAGAAATGGG+TGG 0.618620 1_1:-3229345 Msa0001550:five_prime_UTR
AGACCAGTACCATCCACTAG+TGG 0.620478 1_1:-3227146 Msa0001550:three_prime_UTR
CAAACAGATTAGAAAGGCCA+GGG 0.620778 1_1:+3227880 None:intergenic
TTCTGGTGAGTGTGACATGT+CGG 0.620930 1_1:+3226935 None:intergenic
GACATGTCGGCGACAAACAG+AGG 0.621300 1_1:+3226948 None:intergenic
TGTAAAGGGAGAAGTGGGAG+TGG 0.624059 1_1:+3227341 None:intergenic
AAAATGAAGGTATATTCAAG+GGG 0.625084 1_1:-3228473 Msa0001550:intron
AGCACGCAATGTTATGTTGG+GGG 0.626405 1_1:+3228342 None:intergenic
GAGATTATTGGACAATAACA+AGG 0.626511 1_1:+3226160 None:intergenic
AGTGGTTTAAAAGCTCTGGT+TGG 0.626654 1_1:+3227359 None:intergenic
CTAGGCTCTCTAATTCCTAG+AGG 0.628084 1_1:-3226289 Msa0001550:three_prime_UTR
GATATTGTATATGTGGCTAC+CGG 0.628197 1_1:-3225995 Msa0001550:three_prime_UTR
AACAAGTTGTTGAATGCATG+TGG 0.629110 1_1:+3226711 None:intergenic
GAGCACGCAATGTTATGTTG+GGG 0.634026 1_1:+3228341 None:intergenic
AATGCATGTGGAGTTTCCAT+GGG 0.634692 1_1:+3226723 None:intergenic
ATGATGTAGGCAGGAGCCCG+AGG 0.636021 1_1:+3227416 None:intergenic
AAGTTCACACCTGAAACCAC+AGG 0.636034 1_1:-3227280 Msa0001550:three_prime_UTR
TACTTCCCAGCTACTTCCCG+AGG 0.636324 1_1:-3228398 Msa0001550:CDS
AGTAGCTGGGAAGTATCTGT+AGG 0.636586 1_1:+3228406 None:intergenic
TGGCGGAAGTGAACGATCAG+CGG 0.637167 1_1:+3227021 None:intergenic
AAACTGAAAGGGAAAAGGGA+GGG 0.638231 1_1:-3226349 Msa0001550:three_prime_UTR
CCGTTATAGAGAAGGTCCTG+TGG 0.639432 1_1:+3227264 None:intergenic
GCAACTCTGAACAATAACTA+CGG 0.639683 1_1:-3229055 Msa0001550:CDS
ACAATGCAACAATGAGGTGA+GGG 0.640849 1_1:-3227070 Msa0001550:three_prime_UTR
TCTGCTGTGAAAGCTCATTG+TGG 0.641729 1_1:+3227111 None:intergenic
GTGACCAATCAATGATAGAG+TGG 0.646895 1_1:+3228859 None:intergenic
CGACAAACAGAGGAAGAGTG+AGG 0.647599 1_1:+3226958 None:intergenic
CAACATTGGAGTGCCAAGTG+AGG 0.648949 1_1:-3227474 Msa0001550:three_prime_UTR
TTTGGTGGTTGAGGTCAAAG+TGG 0.651685 1_1:+3227392 None:intergenic
AATGATAGAGTGGTCTCAGG+AGG 0.654021 1_1:+3228869 None:intergenic
CGGAAGTGAACGATCAGCGG+CGG 0.657749 1_1:+3227024 None:intergenic
TGTGGGCAAGCAGATGTATG+GGG 0.663496 1_1:-3228165 Msa0001550:CDS
AGTATGTATGCATAGCAGGA+AGG 0.664109 1_1:-3228646 Msa0001550:intron
TGGTGTTATCGATCAAACCA+GGG 0.665729 1_1:-3228726 Msa0001550:CDS
CAGATGATGTCATTAGACCA+TGG 0.669037 1_1:-3228056 Msa0001550:CDS
GACATCATCTGAACCAACCG+GGG 0.670989 1_1:+3228068 None:intergenic
GACAAACAGAGGAAGAGTGA+GGG 0.671296 1_1:+3226959 None:intergenic
CTAACCGGGAGAATGACGGC+GGG 0.672855 1_1:+3229194 None:intergenic
TAAACTGAAAGGGAAAAGGG+AGG 0.675752 1_1:-3226350 Msa0001550:three_prime_UTR
TGTGTGGGTTCAATGAAGCA+TGG 0.677511 1_1:+3227442 None:intergenic
GGAGTGGTAAACTCCATCCA+GGG 0.679305 1_1:+3228089 None:intergenic
TCTGTATATGCAGCAATTTG+GGG 0.680712 1_1:-3228813 Msa0001550:CDS
GCATTTGGATGGAATTGGAG+AGG 0.682203 1_1:+3229259 None:intergenic
TCTATTCTACTAGTTACCAG+CGG 0.684416 1_1:+3229369 None:intergenic
AGCAGTTGGACATAGGTCTG+TGG 0.689521 1_1:-3225878 Msa0001550:three_prime_UTR
CCATTGTTCCAACACATCAG+GGG 0.693490 1_1:+3228026 None:intergenic
TGCCACACAATGCAACAATG+AGG 0.694054 1_1:-3227076 Msa0001550:three_prime_UTR
GCATACATACTTGAGGTGAG+GGG 0.697105 1_1:+3228658 None:intergenic
TATGGTTATTCTGCCAACAG+AGG 0.698181 1_1:+3226213 None:intergenic
ACTAACCGGGAGAATGACGG+CGG 0.699406 1_1:+3229193 None:intergenic
GATGGCAAATGACATGATGG+CGG 0.703534 1_1:+3227004 None:intergenic
GGTGTTATCGATCAAACCAG+GGG 0.713378 1_1:-3228725 Msa0001550:CDS
CGGTGACTACCAGAAGCTGG+AGG 0.713933 1_1:-3229077 Msa0001550:CDS
ACATCAGGGGAACCATACCA+TGG 0.720174 1_1:+3228039 None:intergenic
ATTGGGATCGATCAAACCAG+CGG 0.724154 1_1:+3228982 None:intergenic
TGGTTTGATCGATAACACCA+GGG 0.758878 1_1:+3228729 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATTTTATTATTTA+AGG - chr1_1:3227545-3227564 Msa0001550:three_prime_UTR 0.0%
!! AGTTAATAACAATGATATAT+TGG + chr1_1:3226450-3226469 None:intergenic 15.0%
!! AGAAATTATTATTAGAACTT+TGG + chr1_1:3227043-3227062 None:intergenic 15.0%
!!! ATGAAAATCATTTTCTATAA+TGG + chr1_1:3227286-3227305 None:intergenic 15.0%
!!! TCTACTATTATTTTTTTGTT+AGG - chr1_1:3228387-3228406 Msa0001550:CDS 15.0%
!!! CTACTATTATTTTTTTGTTA+GGG - chr1_1:3228388-3228407 Msa0001550:CDS 15.0%
!! CTACATATAGAATTATTTAT+TGG + chr1_1:3228685-3228704 None:intergenic 15.0%
!!! ATTGTTATTATGTTAGTAAT+AGG - chr1_1:3228786-3228805 Msa0001550:CDS 15.0%
!! AATATAATTTGAAAACTTTC+CGG + chr1_1:3229261-3229280 None:intergenic 15.0%
!!! ATATCATTGTTATTAACTCT+TGG - chr1_1:3226452-3226471 Msa0001550:three_prime_UTR 20.0%
!! AATATTGTTGAACATAATCA+AGG + chr1_1:3226538-3226557 None:intergenic 20.0%
!! TTGTATAGTAAGTTATGTTT+GGG + chr1_1:3226714-3226733 None:intergenic 20.0%
!! ATTGTATAGTAAGTTATGTT+TGG + chr1_1:3226715-3226734 None:intergenic 20.0%
!!! TAGTTTTGGCTATAAATTAA+CGG + chr1_1:3226968-3226987 None:intergenic 20.0%
!! TTAATTTATAGCCAAAACTA+TGG - chr1_1:3226968-3226987 Msa0001550:three_prime_UTR 20.0%
!!! AGTTCTAATAATAATTTCTC+AGG - chr1_1:3227044-3227063 Msa0001550:three_prime_UTR 20.0%
!! TTTCATTCTTCTTGTATTTA+TGG - chr1_1:3227300-3227319 Msa0001550:three_prime_UTR 20.0%
!!! ATAACCTCATTGATATTTTT+AGG - chr1_1:3227400-3227419 Msa0001550:three_prime_UTR 20.0%
!!! TAACCTCATTGATATTTTTA+GGG - chr1_1:3227401-3227420 Msa0001550:three_prime_UTR 20.0%
!!! TTTGACTTTAAAACAAATTG+CGG - chr1_1:3227515-3227534 Msa0001550:three_prime_UTR 20.0%
!! CATATTTATATGTTAAGTTC+TGG - chr1_1:3228728-3228747 Msa0001550:CDS 20.0%
!! AGAATTATACATAAACTGAA+AGG - chr1_1:3228873-3228892 Msa0001550:CDS 20.0%
!! GAATTATACATAAACTGAAA+GGG - chr1_1:3228874-3228893 Msa0001550:CDS 20.0%
!! AAATATTGAAGATAGTTCAA+TGG + chr1_1:3229107-3229126 None:intergenic 20.0%
!!! ATATTTCAATGAATTTTCTC+AGG - chr1_1:3229314-3229333 Msa0001550:five_prime_UTR 20.0%
!! GTTCTTTATTTATTGAACCA+GGG - chr1_1:3226119-3226138 Msa0001550:three_prime_UTR 25.0%
!! TTCTTTATTTATTGAACCAG+GGG - chr1_1:3226120-3226139 Msa0001550:three_prime_UTR 25.0%
!!! TCAAAAAAGACTACTTTTGA+GGG + chr1_1:3226648-3226667 None:intergenic 25.0%
!!! ATCAAAAAAGACTACTTTTG+AGG + chr1_1:3226649-3226668 None:intergenic 25.0%
! CATTTCTTACTACAAAATGA+AGG - chr1_1:3226748-3226767 Msa0001550:three_prime_UTR 25.0%
!! ACAAAATGAAGGTATATTCA+AGG - chr1_1:3226759-3226778 Msa0001550:three_prime_UTR 25.0%
!! CAAAATGAAGGTATATTCAA+GGG - chr1_1:3226760-3226779 Msa0001550:three_prime_UTR 25.0%
!! AAAATGAAGGTATATTCAAG+GGG - chr1_1:3226761-3226780 Msa0001550:three_prime_UTR 25.0%
! ATAATAATTTCTCAGGTTTG+TGG - chr1_1:3227051-3227070 Msa0001550:three_prime_UTR 25.0%
! TAATAATTTCTCAGGTTTGT+GGG - chr1_1:3227052-3227071 Msa0001550:three_prime_UTR 25.0%
!!! TTGACTTTAAAACAAATTGC+GGG - chr1_1:3227516-3227535 Msa0001550:three_prime_UTR 25.0%
! GGATATGTATTTAAAAACGA+AGG - chr1_1:3227566-3227585 Msa0001550:three_prime_UTR 25.0%
!!! ATTTTTTCATAGGTCAACAT+AGG + chr1_1:3227631-3227650 None:intergenic 25.0%
! TATGTTGACCTATGAAAAAA+TGG - chr1_1:3227630-3227649 Msa0001550:three_prime_UTR 25.0%
!!! TCATGATGTTTGCTTTATTT+GGG + chr1_1:3228025-3228044 None:intergenic 25.0%
!! TTCATGATGTTTGCTTTATT+TGG + chr1_1:3228026-3228045 None:intergenic 25.0%
! AATATATACCAACCTTATTC+TGG + chr1_1:3228319-3228338 None:intergenic 25.0%
!!! GAATAAGGTTGGTATATATT+TGG - chr1_1:3228319-3228338 Msa0001550:CDS 25.0%
!!! TTTTTGAGATTGTGACTTTA+GGG - chr1_1:3228414-3228433 Msa0001550:CDS 25.0%
!! TTTATGAGATTGAGAACTTT+TGG - chr1_1:3228470-3228489 Msa0001550:intron 25.0%
! TTTCCAATTCCATTAACAAA+AGG - chr1_1:3228544-3228563 Msa0001550:intron 25.0%
! CTATATGTAGTATAGTTCAT+TGG - chr1_1:3228695-3228714 Msa0001550:CDS 25.0%
!!! GCATTGGTTATTTTATATGT+TGG - chr1_1:3228907-3228926 Msa0001550:CDS 25.0%
!!! TGGTTATTTTATATGTTGGT+TGG - chr1_1:3228911-3228930 Msa0001550:CDS 25.0%
!!! ATTTTATATGTTGGTTGGTT+TGG - chr1_1:3228916-3228935 Msa0001550:CDS 25.0%
!!! TTTTATATGTTGGTTGGTTT+GGG - chr1_1:3228917-3228936 Msa0001550:CDS 25.0%
! AAGATAGTTCAATGGTATTT+GGG + chr1_1:3229099-3229118 None:intergenic 25.0%
! TCAAATTATATTACGTGCAT+AGG - chr1_1:3229269-3229288 Msa0001550:CDS 25.0%
AGAAAGAGAATGCAAAGAAA+TGG - chr1_1:3225885-3225904 Msa0001550:three_prime_UTR 30.0%
GAAAGAGAATGCAAAGAAAT+GGG - chr1_1:3225886-3225905 Msa0001550:three_prime_UTR 30.0%
AAAGAGAAATAGAGACTAAC+CGG + chr1_1:3226058-3226077 None:intergenic 30.0%
! GGTTCTTTATTTATTGAACC+AGG - chr1_1:3226118-3226137 Msa0001550:three_prime_UTR 30.0%
ATAGTAAGTTATGTTTGGGT+TGG + chr1_1:3226710-3226729 None:intergenic 30.0%
! TGGATTTGAGTTTCCAAAAA+GGG + chr1_1:3226790-3226809 None:intergenic 30.0%
! TTGGATTTGAGTTTCCAAAA+AGG + chr1_1:3226791-3226810 None:intergenic 30.0%
TTATTTGCTTGTGATAGATG+CGG - chr1_1:3227005-3227024 Msa0001550:three_prime_UTR 30.0%
CATCTTCAAGCTAATTAAAG+AGG + chr1_1:3227242-3227261 None:intergenic 30.0%
GATCCCTAAAAATATCAATG+AGG + chr1_1:3227407-3227426 None:intergenic 30.0%
!! TGACTTTAAAACAAATTGCG+GGG - chr1_1:3227517-3227536 Msa0001550:three_prime_UTR 30.0%
TTGACCTATGAAAAAATGGT+CGG - chr1_1:3227634-3227653 Msa0001550:three_prime_UTR 30.0%
!! GAAGAAATTTTGATCACCAA+AGG + chr1_1:3227691-3227710 None:intergenic 30.0%
CTAGACATTGCATATTTAGA+AGG + chr1_1:3228364-3228383 None:intergenic 30.0%
!!! GTTTTTGAGATTGTGACTTT+AGG - chr1_1:3228413-3228432 Msa0001550:CDS 30.0%
TTCTCAATCTCATAAAGTGT+AGG + chr1_1:3228466-3228485 None:intergenic 30.0%
!! AGATTGAGAACTTTTGGTTA+GGG - chr1_1:3228476-3228495 Msa0001550:intron 30.0%
TCCTGAAGTTCAGAAATAAA+TGG + chr1_1:3228580-3228599 None:intergenic 30.0%
ATTTCTGAACTTCAGGATTT+AGG - chr1_1:3228583-3228602 Msa0001550:intron 30.0%
TACATAAACTGAAAGGGAAA+AGG - chr1_1:3228880-3228899 Msa0001550:CDS 30.0%
ACATAAACTGAAAGGGAAAA+GGG - chr1_1:3228881-3228900 Msa0001550:CDS 30.0%
TAGAAAACTAACAAACCTCT+AGG + chr1_1:3228963-3228982 None:intergenic 30.0%
!!! AGAGGTTTGTTAGTTTTCTA+TGG - chr1_1:3228963-3228982 Msa0001550:CDS 30.0%
TGTACTATTGATACACACTA+TGG + chr1_1:3229042-3229061 None:intergenic 30.0%
GAGATTATTGGACAATAACA+AGG + chr1_1:3229077-3229096 None:intergenic 30.0%
AATGGTATTTGGGAGATTAT+TGG + chr1_1:3229089-3229108 None:intergenic 30.0%
GAAGATAGTTCAATGGTATT+TGG + chr1_1:3229100-3229119 None:intergenic 30.0%
ACTAGAATATTGTGCTATCA+TGG - chr1_1:3229157-3229176 Msa0001550:intron 30.0%
!!! TGCTATCATGGCTTTTTTAA+AGG - chr1_1:3229169-3229188 Msa0001550:intron 30.0%
! ACTTGCTGATATTGTATATG+TGG - chr1_1:3229232-3229251 Msa0001550:CDS 30.0%
TCTATTCTACTAGTTACCAG+CGG + chr1_1:3225868-3225887 None:intergenic 35.0%
!! TGTTAACTTGTGGAGCAAAA+TGG - chr1_1:3225945-3225964 Msa0001550:three_prime_UTR 35.0%
AAGAGAAATAGAGACTAACC+GGG + chr1_1:3226057-3226076 None:intergenic 35.0%
TATTTATTGAACCAGGGGTT+AGG - chr1_1:3226125-3226144 Msa0001550:three_prime_UTR 35.0%
ATTTATTGAACCAGGGGTTA+GGG - chr1_1:3226126-3226145 Msa0001550:three_prime_UTR 35.0%
GCAACTCTGAACAATAACTA+CGG - chr1_1:3226179-3226198 Msa0001550:three_prime_UTR 35.0%
TTCAAATACCAATCAAGGAC+AGG + chr1_1:3226305-3226324 None:intergenic 35.0%
CTCTCTTCAAATACCAATCA+AGG + chr1_1:3226310-3226329 None:intergenic 35.0%
! TCTATCATTGATTGGTCACT+CGG - chr1_1:3226379-3226398 Msa0001550:three_prime_UTR 35.0%
GTCTGTATATGCAGCAATTT+GGG - chr1_1:3226420-3226439 Msa0001550:three_prime_UTR 35.0%
TCTGTATATGCAGCAATTTG+GGG - chr1_1:3226421-3226440 Msa0001550:three_prime_UTR 35.0%
! GGATTTGAGTTTCCAAAAAG+GGG + chr1_1:3226789-3226808 None:intergenic 35.0%
! TTTGATAATAGCAGTCTCCT+CGG + chr1_1:3226856-3226875 None:intergenic 35.0%
ATCACAAAGCAATATTTCCC+TGG - chr1_1:3227337-3227356 Msa0001550:three_prime_UTR 35.0%
CAGTAGCAAACAGATTAGAA+AGG + chr1_1:3227363-3227382 None:intergenic 35.0%
! CTTTCTAATCTGTTTGCTAC+TGG - chr1_1:3227361-3227380 Msa0001550:three_prime_UTR 35.0%
!! GACTTTAAAACAAATTGCGG+GGG - chr1_1:3227518-3227537 Msa0001550:three_prime_UTR 35.0%
! TTTTCATAGGTCAACATAGG+TGG + chr1_1:3227628-3227647 None:intergenic 35.0%
TGACCTATGAAAAAATGGTC+GGG - chr1_1:3227635-3227654 Msa0001550:three_prime_UTR 35.0%
!!! TAACCCGACCATTTTTTCAT+AGG + chr1_1:3227641-3227660 None:intergenic 35.0%
ACAACACTTTGAGTCAACAT+TGG - chr1_1:3227746-3227765 Msa0001550:three_prime_UTR 35.0%
! TTAAAAGCTCTGGTTGGTAT+TGG + chr1_1:3227872-3227891 None:intergenic 35.0%
AATTAGGGAGCCAATGTAAA+GGG + chr1_1:3227910-3227929 None:intergenic 35.0%
GAAGAGCTTCCTTTCAATTA+GGG + chr1_1:3227925-3227944 None:intergenic 35.0%
TGAAGAGCTTCCTTTCAATT+AGG + chr1_1:3227926-3227945 None:intergenic 35.0%
GGTTATAGTAATCGTGTTTG+AGG + chr1_1:3228001-3228020 None:intergenic 35.0%
!! TGATGTTTGCTTTATTTGGG+TGG + chr1_1:3228022-3228041 None:intergenic 35.0%
! TCTGGTTTCGTCATAATAAC+CGG + chr1_1:3228071-3228090 None:intergenic 35.0%
!!! GAATGTGTTTTTTCCACTAG+TGG + chr1_1:3228104-3228123 None:intergenic 35.0%
TAGGGAAAGAGACAACAAAT+TGG - chr1_1:3228432-3228451 Msa0001550:CDS 35.0%
!! GAGATTGAGAACTTTTGGTT+AGG - chr1_1:3228475-3228494 Msa0001550:intron 35.0%
AACAAGTTGTTGAATGCATG+TGG + chr1_1:3228526-3228545 None:intergenic 35.0%
! CTGCCTTTTGTTAATGGAAT+TGG + chr1_1:3228550-3228569 None:intergenic 35.0%
! AAGTAGCTGCCTTTTGTTAA+TGG + chr1_1:3228556-3228575 None:intergenic 35.0%
!! GCCATTTATTTCTGAACTTC+AGG - chr1_1:3228576-3228595 Msa0001550:intron 35.0%
! TACTTGTTGGAGATAGAACT+TGG - chr1_1:3228616-3228635 Msa0001550:intron 35.0%
TTGGAGATAGAACTTGGAAT+TGG - chr1_1:3228622-3228641 Msa0001550:intron 35.0%
ATTAATGTAACCACCTCTGT+TGG - chr1_1:3229008-3229027 Msa0001550:CDS 35.0%
TACAATATCAGCAAGTATGC+CGG + chr1_1:3229228-3229247 None:intergenic 35.0%
GATATTGTATATGTGGCTAC+CGG - chr1_1:3229239-3229258 Msa0001550:CDS 35.0%
!! TGTGGTCTTATTCAAGCAAT+AGG - chr1_1:3229374-3229393 Msa0001550:five_prime_UTR 35.0%
AGAGAATGCAAAGAAATGGG+TGG - chr1_1:3225889-3225908 Msa0001550:three_prime_UTR 40.0%
AGTGAGCATTTGGATGGAAT+TGG + chr1_1:3225983-3226002 None:intergenic 40.0%
AGAAGAAGACAGTGAGCATT+TGG + chr1_1:3225993-3226012 None:intergenic 40.0%
AACCAAATGAATGCGATGTG+AGG + chr1_1:3226102-3226121 None:intergenic 40.0%
GTTTGATCGATCCCAATTAC+TGG - chr1_1:3226258-3226277 Msa0001550:three_prime_UTR 40.0%
!! AGTTGATGATGCTGTTCAAG+AGG - chr1_1:3226328-3226347 Msa0001550:three_prime_UTR 40.0%
ATCAATGATAGAGTGGTCTC+AGG + chr1_1:3226371-3226390 None:intergenic 40.0%
GAGACCACTCTATCATTGAT+TGG - chr1_1:3226371-3226390 Msa0001550:three_prime_UTR 40.0%
GTGACCAATCAATGATAGAG+TGG + chr1_1:3226378-3226397 None:intergenic 40.0%
CGTCTGTATATGCAGCAATT+TGG - chr1_1:3226419-3226438 Msa0001550:three_prime_UTR 40.0%
TGGTTTGATCGATAACACCA+GGG + chr1_1:3226508-3226527 None:intergenic 40.0%
!! TGGTGTTATCGATCAAACCA+GGG - chr1_1:3226508-3226527 Msa0001550:three_prime_UTR 40.0%
TGCATACATACTTGAGGTGA+GGG + chr1_1:3226580-3226599 None:intergenic 40.0%
ATGCATACATACTTGAGGTG+AGG + chr1_1:3226581-3226600 None:intergenic 40.0%
CTGCTATGCATACATACTTG+AGG + chr1_1:3226586-3226605 None:intergenic 40.0%
CTCAAGTATGTATGCATAGC+AGG - chr1_1:3226584-3226603 Msa0001550:three_prime_UTR 40.0%
AGTATGTATGCATAGCAGGA+AGG - chr1_1:3226588-3226607 Msa0001550:three_prime_UTR 40.0%
AACACACACACACTCTTTCA+AGG - chr1_1:3226612-3226631 Msa0001550:three_prime_UTR 40.0%
!! AAGTTATGTTTGGGTTGGCA+TGG + chr1_1:3226705-3226724 None:intergenic 40.0%
! TTGATAATAGCAGTCTCCTC+GGG + chr1_1:3226855-3226874 None:intergenic 40.0%
! CAGTTTGCACACCATAGTTT+TGG + chr1_1:3226982-3227001 None:intergenic 40.0%
TCAAGATGAGCTGATACTTC+TGG + chr1_1:3227108-3227127 None:intergenic 40.0%
! GAAGTATCAGCTCATCTTGA+CGG - chr1_1:3227108-3227127 Msa0001550:three_prime_UTR 40.0%
ATGACATCATCTGAACCAAC+CGG + chr1_1:3227171-3227190 None:intergenic 40.0%
CAGATGATGTCATTAGACCA+TGG - chr1_1:3227178-3227197 Msa0001550:three_prime_UTR 40.0%
GATGTCATTAGACCATGGTA+TGG - chr1_1:3227183-3227202 Msa0001550:three_prime_UTR 40.0%
TCCATTGTTCCAACACATCA+GGG + chr1_1:3227212-3227231 None:intergenic 40.0%
ATCCATTGTTCCAACACATC+AGG + chr1_1:3227213-3227232 None:intergenic 40.0%
CAAACAGATTAGAAAGGCCA+GGG + chr1_1:3227357-3227376 None:intergenic 40.0%
TGCTACTGGTATGTCTATAG+AGG - chr1_1:3227375-3227394 Msa0001550:three_prime_UTR 40.0%
CATATGGCAGATCTTGGAAT+TGG + chr1_1:3227718-3227737 None:intergenic 40.0%
!! AGTGTTGTTTCGTGCACATA+TGG + chr1_1:3227734-3227753 None:intergenic 40.0%
AGGTCAAAGTGGAATGATGT+AGG + chr1_1:3227834-3227853 None:intergenic 40.0%
! AGTGGTTTAAAAGCTCTGGT+TGG + chr1_1:3227878-3227897 None:intergenic 40.0%
CAATTAGGGAGCCAATGTAA+AGG + chr1_1:3227911-3227930 None:intergenic 40.0%
!! ACATTGGCTCCCTAATTGAA+AGG - chr1_1:3227913-3227932 Msa0001550:three_prime_UTR 40.0%
! TTTTCCAGAACTCCATCATC+CGG - chr1_1:3228049-3228068 Msa0001550:CDS 40.0%
TCGTCATAATAACCGGATGA+TGG + chr1_1:3228064-3228083 None:intergenic 40.0%
!!! GTGTTTTTTCCACTAGTGGA+TGG + chr1_1:3228100-3228119 None:intergenic 40.0%
ACAATGCAACAATGAGGTGA+GGG - chr1_1:3228164-3228183 Msa0001550:CDS 40.0%
ATGTCACACTCACCAGAATA+AGG - chr1_1:3228304-3228323 Msa0001550:intron 40.0%
GGAAAGAGACAACAAATTGG+AGG - chr1_1:3228435-3228454 Msa0001550:CDS 40.0%
AATGCATGTGGAGTTTCCAT+GGG + chr1_1:3228514-3228533 None:intergenic 40.0%
AACTTCAGGATTTAGGTGCA+CGG - chr1_1:3228590-3228609 Msa0001550:intron 40.0%
! CTTGGAATTGGTGTCTTTGT+TGG - chr1_1:3228634-3228653 Msa0001550:intron 40.0%
AACTGCTATGTTACTGCTGT+AGG - chr1_1:3228845-3228864 Msa0001550:CDS 40.0%
TAAACTGAAAGGGAAAAGGG+AGG - chr1_1:3228884-3228903 Msa0001550:CDS 40.0%
AAACTGAAAGGGAAAAGGGA+GGG - chr1_1:3228885-3228904 Msa0001550:CDS 40.0%
TATGGTTATTCTGCCAACAG+AGG + chr1_1:3229024-3229043 None:intergenic 40.0%
CTGTTATTCTCATGTTGCAC+CGG - chr1_1:3229206-3229225 Msa0001550:CDS 40.0%
ATGTTACGTCCAAAAGCAGT+TGG - chr1_1:3229342-3229361 Msa0001550:five_prime_UTR 40.0%
ATGCAAAGAAATGGGTGGAG+AGG - chr1_1:3225894-3225913 Msa0001550:three_prime_UTR 45.0%
AATGGGTGGAGAGGAAGTAA+AGG - chr1_1:3225903-3225922 Msa0001550:three_prime_UTR 45.0%
ATGGGTGGAGAGGAAGTAAA+GGG - chr1_1:3225904-3225923 Msa0001550:three_prime_UTR 45.0%
! CGAGCAGTGATGTTAACTTG+TGG - chr1_1:3225935-3225954 Msa0001550:three_prime_UTR 45.0%
GCATTTGGATGGAATTGGAG+AGG + chr1_1:3225978-3225997 None:intergenic 45.0%
GAAGACAGTGAGCATTTGGA+TGG + chr1_1:3225989-3226008 None:intergenic 45.0%
CTGCTTCCACCAACAACTAT+CGG - chr1_1:3226017-3226036 Msa0001550:three_prime_UTR 45.0%
CTCCTCACATCGCATTCATT+TGG - chr1_1:3226097-3226116 Msa0001550:three_prime_UTR 45.0%
ATTGGGATCGATCAAACCAG+CGG + chr1_1:3226255-3226274 None:intergenic 45.0%
AATGATAGAGTGGTCTCAGG+AGG + chr1_1:3226368-3226387 None:intergenic 45.0%
!! TTTTGGAGGTGGATGATGAG+GGG + chr1_1:3226480-3226499 None:intergenic 45.0%
!! CTTTTGGAGGTGGATGATGA+GGG + chr1_1:3226481-3226500 None:intergenic 45.0%
! CTGGTTTGATCGATAACACC+AGG + chr1_1:3226509-3226528 None:intergenic 45.0%
!! CTGGTGTTATCGATCAAACC+AGG - chr1_1:3226507-3226526 Msa0001550:three_prime_UTR 45.0%
! GGTGTTATCGATCAAACCAG+GGG - chr1_1:3226509-3226528 Msa0001550:three_prime_UTR 45.0%
AACATAATCAAGGAGACCCC+TGG + chr1_1:3226528-3226547 None:intergenic 45.0%
GCATACATACTTGAGGTGAG+GGG + chr1_1:3226579-3226598 None:intergenic 45.0%
! GAAGTATCTGTAGGAAGTGC+AGG + chr1_1:3226822-3226841 None:intergenic 45.0%
!! AGTAGCTGGGAAGTATCTGT+AGG + chr1_1:3226831-3226850 None:intergenic 45.0%
TGTTATGTTGGGGGAAGAAG+TGG + chr1_1:3226886-3226905 None:intergenic 45.0%
AGCACGCAATGTTATGTTGG+GGG + chr1_1:3226895-3226914 None:intergenic 45.0%
GAGCACGCAATGTTATGTTG+GGG + chr1_1:3226896-3226915 None:intergenic 45.0%
CGAGCACGCAATGTTATGTT+GGG + chr1_1:3226897-3226916 None:intergenic 45.0%
CATTCACCTGCTTGTATCCT+TGG + chr1_1:3226929-3226948 None:intergenic 45.0%
TTTGTGGGCAAGCAGATGTA+TGG - chr1_1:3227067-3227086 Msa0001550:three_prime_UTR 45.0%
TTGTGGGCAAGCAGATGTAT+GGG - chr1_1:3227068-3227087 Msa0001550:three_prime_UTR 45.0%
GCACTTAACATTTCCCTGGA+TGG - chr1_1:3227132-3227151 Msa0001550:three_prime_UTR 45.0%
TGACATCATCTGAACCAACC+GGG + chr1_1:3227170-3227189 None:intergenic 45.0%
CCATTGTTCCAACACATCAG+GGG + chr1_1:3227211-3227230 None:intergenic 45.0%
GCAAACAGATTAGAAAGGCC+AGG + chr1_1:3227358-3227377 None:intergenic 45.0%
TCATAGGTCAACATAGGTGG+TGG + chr1_1:3227625-3227644 None:intergenic 45.0%
GGTCGGGTTATTGATACCAT+TGG - chr1_1:3227651-3227670 Msa0001550:three_prime_UTR 45.0%
GGAAACGTCATTGTCACCAA+TGG + chr1_1:3227670-3227689 None:intergenic 45.0%
GGTGACAATGACGTTTCCTT+TGG - chr1_1:3227672-3227691 Msa0001550:three_prime_UTR 45.0%
TGTGTGGGTTCAATGAAGCA+TGG + chr1_1:3227795-3227814 None:intergenic 45.0%
ATTGAACCCACACAACACCT+CGG - chr1_1:3227801-3227820 Msa0001550:three_prime_UTR 45.0%
CAAAGTGGAATGATGTAGGC+AGG + chr1_1:3227830-3227849 None:intergenic 45.0%
! TTTGGTGGTTGAGGTCAAAG+TGG + chr1_1:3227845-3227864 None:intergenic 45.0%
!! ATTGGTGCTTTTGGTGGTTG+AGG + chr1_1:3227854-3227873 None:intergenic 45.0%
!!! GTTGGTATTGGTGCTTTTGG+TGG + chr1_1:3227860-3227879 None:intergenic 45.0%
!!! CTGGTTGGTATTGGTGCTTT+TGG + chr1_1:3227863-3227882 None:intergenic 45.0%
TGGGAGTGGTTTAAAAGCTC+TGG + chr1_1:3227882-3227901 None:intergenic 45.0%
TCCCACTTCTCCCTTTACAT+TGG - chr1_1:3227897-3227916 Msa0001550:three_prime_UTR 45.0%
GCCAATGTAAAGGGAGAAGT+GGG + chr1_1:3227901-3227920 None:intergenic 45.0%
AGCCAATGTAAAGGGAGAAG+TGG + chr1_1:3227902-3227921 None:intergenic 45.0%
! GTTTCAGGTGTGAACTTGGA+TGG + chr1_1:3227951-3227970 None:intergenic 45.0%
! TGTGGTTTCAGGTGTGAACT+TGG + chr1_1:3227955-3227974 None:intergenic 45.0%
AAGTTCACACCTGAAACCAC+AGG - chr1_1:3227954-3227973 Msa0001550:three_prime_UTR 45.0%
CCACAGGACCTTCTCTATAA+CGG - chr1_1:3227970-3227989 Msa0001550:three_prime_UTR 45.0%
AGGTCTTGCCGTTATAGAGA+AGG + chr1_1:3227981-3228000 None:intergenic 45.0%
!! ATAACCGGATGATGGAGTTC+TGG + chr1_1:3228056-3228075 None:intergenic 45.0%
! TTTCCACTAGTGGATGGTAC+TGG + chr1_1:3228094-3228113 None:intergenic 45.0%
TCTGCTGTGAAAGCTCATTG+TGG + chr1_1:3228126-3228145 None:intergenic 45.0%
TGCCACACAATGCAACAATG+AGG - chr1_1:3228158-3228177 Msa0001550:CDS 45.0%
CACCTCATTGTTGCATTGTG+TGG + chr1_1:3228163-3228182 None:intergenic 45.0%
CACAATGCAACAATGAGGTG+AGG - chr1_1:3228163-3228182 Msa0001550:CDS 45.0%
GATGGCAAATGACATGATGG+CGG + chr1_1:3228233-3228252 None:intergenic 45.0%
CAGGATGGCAAATGACATGA+TGG + chr1_1:3228236-3228255 None:intergenic 45.0%
! CATCATGTCATTTGCCATCC+TGG - chr1_1:3228234-3228253 Msa0001550:intron 45.0%
TATGTAGTGAAGCAAGAGCC+AGG + chr1_1:3228255-3228274 None:intergenic 45.0%
GACAAACAGAGGAAGAGTGA+GGG + chr1_1:3228278-3228297 None:intergenic 45.0%
TTCTGGTGAGTGTGACATGT+CGG + chr1_1:3228302-3228321 None:intergenic 45.0%
CACACTCACCAGAATAAGGT+TGG - chr1_1:3228308-3228327 Msa0001550:intron 45.0%
GAATGCATGTGGAGTTTCCA+TGG + chr1_1:3228515-3228534 None:intergenic 45.0%
ACTTCAGGATTTAGGTGCAC+GGG - chr1_1:3228591-3228610 Msa0001550:intron 45.0%
! GGAATTGGTGTCTTTGTTGG+AGG - chr1_1:3228637-3228656 Msa0001550:intron 45.0%
CTAGGCTCTCTAATTCCTAG+AGG - chr1_1:3228945-3228964 Msa0001550:CDS 45.0%
CGGTGCAACATGAGAATAAC+AGG + chr1_1:3229208-3229227 None:intergenic 45.0%
GTCCAAAAGCAGTTGGACAT+AGG - chr1_1:3229349-3229368 Msa0001550:five_prime_UTR 45.0%
! GACCTATGTCCAACTGCTTT+TGG + chr1_1:3229354-3229373 None:intergenic 45.0%
GAGACTAACCGGGAGAATGA+CGG + chr1_1:3226047-3226066 None:intergenic 50.0%
CAGGGGTTAGGGAACAATTC+CGG - chr1_1:3226137-3226156 Msa0001550:three_prime_UTR 50.0%
TGACACCTTGGCAACAACTG+TGG + chr1_1:3226210-3226229 None:intergenic 50.0%
CCAATCAGGTCTTGACACCT+TGG + chr1_1:3226222-3226241 None:intergenic 50.0%
! CCAAGGTGTCAAGACCTGAT+TGG - chr1_1:3226219-3226238 Msa0001550:three_prime_UTR 50.0%
CGATCAAACCAGCGGCATTT+CGG + chr1_1:3226247-3226266 None:intergenic 50.0%
ATCGATCCCAATTACTGGCG+TGG - chr1_1:3226263-3226282 Msa0001550:three_prime_UTR 50.0%
! AGAGTGCCACGCCAGTAATT+GGG + chr1_1:3226272-3226291 None:intergenic 50.0%
!! AAGAGTGCCACGCCAGTAAT+TGG + chr1_1:3226273-3226292 None:intergenic 50.0%
AACCAACGCCTGTCCTTGAT+TGG - chr1_1:3226294-3226313 Msa0001550:three_prime_UTR 50.0%
TACCAATCAAGGACAGGCGT+TGG + chr1_1:3226299-3226318 None:intergenic 50.0%
TGATGCTGTTCAAGAGGCCA+TGG - chr1_1:3226334-3226353 Msa0001550:three_prime_UTR 50.0%
! TCATTGATTGGTCACTCGGC+TGG - chr1_1:3226383-3226402 Msa0001550:three_prime_UTR 50.0%
!! CCTTTTGGAGGTGGATGATG+AGG + chr1_1:3226482-3226501 None:intergenic 50.0%
CCTCATCATCCACCTCCAAA+AGG - chr1_1:3226479-3226498 Msa0001550:three_prime_UTR 50.0%
! ATAACACCAGGGACGCCTTT+TGG + chr1_1:3226497-3226516 None:intergenic 50.0%
! TTGAGGTGAGGGGTGTAAAC+AGG + chr1_1:3226569-3226588 None:intergenic 50.0%
! ATTCAAGGGGCTCCCCTTTT+TGG - chr1_1:3226774-3226793 Msa0001550:three_prime_UTR 50.0%
GCGAGCACGCAATGTTATGT+TGG + chr1_1:3226898-3226917 None:intergenic 50.0%
ACATTGCGTGCTCGCTTTGT+TGG - chr1_1:3226903-3226922 Msa0001550:three_prime_UTR 50.0%
TGTTGGCCAAGGATACAAGC+AGG - chr1_1:3226920-3226939 Msa0001550:three_prime_UTR 50.0%
TGTGGGCAAGCAGATGTATG+GGG - chr1_1:3227069-3227088 Msa0001550:three_prime_UTR 50.0%
CGGTGCACTTAACATTTCCC+TGG - chr1_1:3227128-3227147 Msa0001550:three_prime_UTR 50.0%
GGAGTGGTAAACTCCATCCA+GGG + chr1_1:3227148-3227167 None:intergenic 50.0%
GACATCATCTGAACCAACCG+GGG + chr1_1:3227169-3227188 None:intergenic 50.0%
ACATCAGGGGAACCATACCA+TGG + chr1_1:3227198-3227217 None:intergenic 50.0%
GTATGGTTCCCCTGATGTGT+TGG - chr1_1:3227200-3227219 Msa0001550:three_prime_UTR 50.0%
CCCCTGATGTGTTGGAACAA+TGG - chr1_1:3227208-3227227 Msa0001550:three_prime_UTR 50.0%
!! TCAACATAGGTGGTGGATGG+GGG + chr1_1:3227618-3227637 None:intergenic 50.0%
!! GTCAACATAGGTGGTGGATG+GGG + chr1_1:3227619-3227638 None:intergenic 50.0%
!! GGTCAACATAGGTGGTGGAT+GGG + chr1_1:3227620-3227639 None:intergenic 50.0%
!! AGGTCAACATAGGTGGTGGA+TGG + chr1_1:3227621-3227640 None:intergenic 50.0%
CGTGCACATATGGCAGATCT+TGG + chr1_1:3227724-3227743 None:intergenic 50.0%
! CAACATTGGAGTGCCAAGTG+AGG - chr1_1:3227760-3227779 Msa0001550:three_prime_UTR 50.0%
TTGAACCCACACAACACCTC+GGG - chr1_1:3227802-3227821 Msa0001550:three_prime_UTR 50.0%
TGTAAAGGGAGAAGTGGGAG+TGG + chr1_1:3227896-3227915 None:intergenic 50.0%
AGAGAAGGTCCTGTGGTTTC+AGG + chr1_1:3227966-3227985 None:intergenic 50.0%
CCGTTATAGAGAAGGTCCTG+TGG + chr1_1:3227973-3227992 None:intergenic 50.0%
!! ACTAGTGGATGGTACTGGTC+TGG + chr1_1:3228089-3228108 None:intergenic 50.0%
AGACCAGTACCATCCACTAG+TGG - chr1_1:3228088-3228107 Msa0001550:CDS 50.0%
TAGTGAAGCAAGAGCCAGGA+TGG + chr1_1:3228251-3228270 None:intergenic 50.0%
CGACAAACAGAGGAAGAGTG+AGG + chr1_1:3228279-3228298 None:intergenic 50.0%
AGGGAAGCTTTCACTTCCCA+TGG - chr1_1:3228495-3228514 Msa0001550:intron 50.0%
AGGTGCACGGGTATACTTGT+TGG - chr1_1:3228603-3228622 Msa0001550:intron 50.0%
! AAAGGGAAAAGGGAGGGCAT+TGG - chr1_1:3228891-3228910 Msa0001550:CDS 50.0%
!! TGGTTGGTTTGGGAGAGACT+AGG - chr1_1:3228927-3228946 Msa0001550:CDS 50.0%
GGTTATTCTGCCAACAGAGG+TGG + chr1_1:3229021-3229040 None:intergenic 50.0%
AGCAGTTGGACATAGGTCTG+TGG - chr1_1:3229356-3229375 Msa0001550:five_prime_UTR 50.0%
ACTAACCGGGAGAATGACGG+CGG + chr1_1:3226044-3226063 None:intergenic 55.0%
CGGAATTGTTCCCTAACCCC+TGG + chr1_1:3226139-3226158 None:intergenic 55.0%
TTCCGGTGACTACCAGAAGC+TGG - chr1_1:3226154-3226173 Msa0001550:three_prime_UTR 55.0%
CTCCAGCTTCTGGTAGTCAC+CGG + chr1_1:3226159-3226178 None:intergenic 55.0%
TCAGAGTTGCCTCCAGCTTC+TGG + chr1_1:3226169-3226188 None:intergenic 55.0%
CGTGTCCACAGTTGTTGCCA+AGG - chr1_1:3226202-3226221 Msa0001550:three_prime_UTR 55.0%
!! CTCAGGAGGTGCTAACTCCA+TGG + chr1_1:3226354-3226373 None:intergenic 55.0%
! TTGATTGGTCACTCGGCTGG+AGG - chr1_1:3226386-3226405 Msa0001550:three_prime_UTR 55.0%
! GGAAGTGCAGGCTCAGCATT+TGG + chr1_1:3226810-3226829 None:intergenic 55.0%
TACTTCCCAGCTACTTCCCG+AGG - chr1_1:3226836-3226855 Msa0001550:three_prime_UTR 55.0%
AGTCTCCTCGGGAAGTAGCT+GGG + chr1_1:3226844-3226863 None:intergenic 55.0%
CAAGCAGATGTATGGGGCGA+TGG - chr1_1:3227075-3227094 Msa0001550:three_prime_UTR 55.0%
GGGAGTGGTAAACTCCATCC+AGG + chr1_1:3227149-3227168 None:intergenic 55.0%
GGATGGAGTTTACCACTCCC+CGG - chr1_1:3227149-3227168 Msa0001550:three_prime_UTR 55.0%
TGGCGGAAGTGAACGATCAG+CGG + chr1_1:3228216-3228235 None:intergenic 55.0%
GACATGTCGGCGACAAACAG+AGG + chr1_1:3228289-3228308 None:intergenic 55.0%
CTAACCGGGAGAATGACGGC+GGG + chr1_1:3226043-3226062 None:intergenic 60.0%
CGGTGACTACCAGAAGCTGG+AGG - chr1_1:3226157-3226176 Msa0001550:three_prime_UTR 60.0%
GCGGCATTTCGGAGCCAATC+AGG + chr1_1:3226236-3226255 None:intergenic 60.0%
! GATTGGCTCCGAAATGCCGC+TGG - chr1_1:3226236-3226255 Msa0001550:three_prime_UTR 60.0%
TTGGTCACTCGGCTGGAGGA+TGG - chr1_1:3226390-3226409 Msa0001550:three_prime_UTR 60.0%
! ACACCAGGGACGCCTTTTGG+AGG + chr1_1:3226494-3226513 None:intergenic 60.0%
CAGTCTCCTCGGGAAGTAGC+TGG + chr1_1:3226845-3226864 None:intergenic 60.0%
! CGTGCTCGCTTTGTTGGCCA+AGG - chr1_1:3226909-3226928 Msa0001550:three_prime_UTR 60.0%
GGAGTTTACCACTCCCCGGT+TGG - chr1_1:3227153-3227172 Msa0001550:three_prime_UTR 60.0%
CATCTGAACCAACCGGGGAG+TGG + chr1_1:3227164-3227183 None:intergenic 60.0%
!! CATAGGTGGTGGATGGGGGA+AGG + chr1_1:3227614-3227633 None:intergenic 60.0%
ATGGCAGAGCTCGCCTCACT+TGG + chr1_1:3227776-3227795 None:intergenic 60.0%
!! AGGAGCCCGAGGTGTTGTGT+GGG + chr1_1:3227810-3227829 None:intergenic 60.0%
ATGATGTAGGCAGGAGCCCG+AGG + chr1_1:3227821-3227840 None:intergenic 60.0%
CGGAAGTGAACGATCAGCGG+CGG + chr1_1:3228213-3228232 None:intergenic 60.0%
GGCGGGCCGATAGTTGTTGG+TGG + chr1_1:3226026-3226045 None:intergenic 65.0%
GACGGCGGGCCGATAGTTGT+TGG + chr1_1:3226029-3226048 None:intergenic 65.0%
!! CCAGGGACGCCTTTTGGAGG+TGG + chr1_1:3226491-3226510 None:intergenic 65.0%
!! CCACCTCCAAAAGGCGTCCC+TGG - chr1_1:3226488-3226507 Msa0001550:three_prime_UTR 65.0%
GAAGGACGAGCGAGAGAGGG+AGG + chr1_1:3227596-3227615 None:intergenic 65.0%
GGGGAAGGACGAGCGAGAGA+GGG + chr1_1:3227599-3227618 None:intergenic 65.0%
!! CAGGAGCCCGAGGTGTTGTG+TGG + chr1_1:3227811-3227830 None:intergenic 65.0%
TCGGCCCGCCGTCATTCTCC+CGG - chr1_1:3226036-3226055 Msa0001550:three_prime_UTR 70.0%
GGGGGAAGGACGAGCGAGAG+AGG + chr1_1:3227600-3227619 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3225858 3229398 3225858 ID=Msa0001550;Name=Msa0001550
chr1_1 mRNA 3225858 3229398 3225858 ID=Msa0001550-mRNA-1;Parent=Msa0001550;Name=Msa0001550-mRNA-1;_AED=0.10;_eAED=0.10;_QI=86|1|1|1|1|1|4|2147|313
chr1_1 exon 3225858 3228190 3225858 ID=Msa0001550-mRNA-1:exon:895;Parent=Msa0001550-mRNA-1
chr1_1 exon 3228315 3228486 3228315 ID=Msa0001550-mRNA-1:exon:894;Parent=Msa0001550-mRNA-1
chr1_1 exon 3228647 3229116 3228647 ID=Msa0001550-mRNA-1:exon:893;Parent=Msa0001550-mRNA-1
chr1_1 exon 3229199 3229398 3229199 ID=Msa0001550-mRNA-1:exon:892;Parent=Msa0001550-mRNA-1
chr1_1 five_prime_UTR 3229313 3229398 3229313 ID=Msa0001550-mRNA-1:five_prime_utr;Parent=Msa0001550-mRNA-1
chr1_1 CDS 3229199 3229312 3229199 ID=Msa0001550-mRNA-1:cds;Parent=Msa0001550-mRNA-1
chr1_1 CDS 3228647 3229116 3228647 ID=Msa0001550-mRNA-1:cds;Parent=Msa0001550-mRNA-1
chr1_1 CDS 3228315 3228486 3228315 ID=Msa0001550-mRNA-1:cds;Parent=Msa0001550-mRNA-1
chr1_1 CDS 3228005 3228190 3228005 ID=Msa0001550-mRNA-1:cds;Parent=Msa0001550-mRNA-1
chr1_1 three_prime_UTR 3225858 3228004 3225858 ID=Msa0001550-mRNA-1:three_prime_utr;Parent=Msa0001550-mRNA-1
Gene Sequence

>Msa0001550

ATGTTAACTTGTGGAGCAAAATGGATGTCAGCCTCTCCAATTCCATCCAAATGCTCACTGTCTTCTTCTTCATCTGCTTCCACCAACAACTATCGGCCCGCCGTCATTCTCCCGGGGTTAGGGAACAATTCCGGTGACTACCAGAAGCTGGAGGCAACTCTGAACAATAACTACGGCGTGTCCACAGTTGTTGCCAAGGTGTCAAGACCTGATTGGCTCCGAAATGCCGCTGGTTTGATCGATCCCAATTACTGGCGTGGCACTCTTCAACCAACGCCTGTCCTTGATTGGTATTTGAAGAGAGTTGATGATGCTGTTCAAGAGGCCATGGAGTTAGCACCTCCTGAGACCACTCTATCATTGATTGGTCACTCGGCTGGAGGATGGCTTGCGCGTCTGTATATGCAGCAATTTGGGGTGTCCAATATATCATTGTTATTAACTCTTGGAACCCCTCATCATCCACCTCCAAAAGGCGTCCCTGGTGTTATCGATCAAACCAGGGGTCTCCTTGATTATGTTCAACAATATTGCTCTAAACCTGTTTACACCCCTCACCTCAAGTATGTATGCATAGCAGGAAGGTATATTCAAGGGGCTCCCCTTTTTGGAAACTCAAATCCAAATGCTGAGCCTGCACTTCCTACAGATACTTCCCAGCTACTTCCCGAGGAGACTGCTATTATCAAAGCTGCAACCACTTCTTCCCCCAACATAACATTGCGTGCTCGCTTTGTTGGCCAAGGATACAAGCAGGTTTGTGGGCAAGCAGATGTATGGGGCGATGGTGTTGTGCCAGAAGTATCAGCTCATCTTGACGGTGCACTTAACATTTCCCTGGATGGAGTTTACCACTCCCCGGTTGGTTCAGATGATGTCATTAGACCATGGTATGGTTCCCCTGATGTGTTGGAACAATGGATAGAACACCTCTTTAATTAG
Protein sequence

>Msa0001550

MLTCGAKWMSASPIPSKCSLSSSSSASTNNYRPAVILPGLGNNSGDYQKLEATLNNNYGVSTVVAKVSRPDWLRNAAGLIDPNYWRGTLQPTPVLDWYLKRVDDAVQEAMELAPPETTLSLIGHSAGGWLARLYMQQFGVSNISLLLTLGTPHHPPPKGVPGVIDQTRGLLDYVQQYCSKPVYTPHLKYVCIAGRYIQGAPLFGNSNPNAEPALPTDTSQLLPEETAIIKAATTSSPNITLRARFVGQGYKQVCGQADVWGDGVVPEVSAHLDGALNISLDGVYHSPVGSDDVIRPWYGSPDVLEQWIEHLFN*