AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476170 MtrunA17_Chr3g0145941 97.452 314 7 1 1 313 1 314 0.0 626
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476170 AT5G17670.1 68.070 285 84 4 30 313 31 309 9.01e-137 390

Find 198 sgRNAs with CRISPR-Local

Find 493 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGATGTTTGCTTTATT+TGG 0.069780 3_3:-79937657 None:intergenic
TTTCATTCTTCTTGTATTTA+TGG 0.097227 3_3:+79936934 Msa0476170:three_prime_UTR
GTCTGTATATGCAGCAATTT+GGG 0.178912 3_3:+79936054 Msa0476170:CDS
AGAGAAGGTCCTGTGGTTTC+AGG 0.187842 3_3:-79937597 None:intergenic
TGAAGAGCTTCCTTTCAATT+AGG 0.239569 3_3:-79937557 None:intergenic
CGTCTGTATATGCAGCAATT+TGG 0.240390 3_3:+79936053 Msa0476170:CDS
AAGAGTGCCACGCCAGTAAT+TGG 0.244199 3_3:-79935904 None:intergenic
CATTCACCTGCTTGTATCCT+TGG 0.277029 3_3:-79936560 None:intergenic
ATAACACCAGGGACGCCTTT+TGG 0.317246 3_3:-79936128 None:intergenic
TCAGAGTTGCCTCCAGCTTC+TGG 0.320028 3_3:-79935800 None:intergenic
TTGGATTTGAGTTTCCAAAA+AGG 0.331624 3_3:-79936422 None:intergenic
TCATGATGTTTGCTTTATTT+GGG 0.333445 3_3:-79937656 None:intergenic
CTGGTTGGTATTGGTGCTTT+TGG 0.334919 3_3:-79937494 None:intergenic
CTTTCTAATCTGTTTGCTAC+TGG 0.335586 3_3:+79936995 Msa0476170:three_prime_UTR
TATTTATTGAACCAGGGGTT+AGG 0.339291 3_3:+79935759 Msa0476170:intron
GAAGAGCTTCCTTTCAATTA+GGG 0.341579 3_3:-79937556 None:intergenic
AGAAAGAGAATGCAAAGAAA+TGG 0.345829 3_3:+79935519 Msa0476170:five_prime_UTR
ACATTGCGTGCTCGCTTTGT+TGG 0.348023 3_3:+79936537 Msa0476170:CDS
AGTGAGCATTTGGATGGAAT+TGG 0.358570 3_3:-79935614 None:intergenic
CGATCAAACCAGCGGCATTT+CGG 0.365710 3_3:-79935878 None:intergenic
AGAAGAAGACAGTGAGCATT+TGG 0.366919 3_3:-79935624 None:intergenic
GGAAGTGCAGGCTCAGCATT+TGG 0.368790 3_3:-79936441 None:intergenic
ATATCATTGTTATTAACTCT+TGG 0.371502 3_3:+79936086 Msa0476170:CDS
GTTTGATCGATCCCAATTAC+TGG 0.372683 3_3:+79935892 Msa0476170:CDS
AGTTAATAACAATGATATAT+TGG 0.374538 3_3:-79936081 None:intergenic
TTTGTGGGCAAGCAGATGTA+TGG 0.392192 3_3:+79936701 Msa0476170:CDS
CGTGCACATATGGCAGATCT+TGG 0.394412 3_3:-79937355 None:intergenic
AACCAACGCCTGTCCTTGAT+TGG 0.395983 3_3:+79935928 Msa0476170:CDS
ATCCATTGTTCCAACACATC+AGG 0.397261 3_3:-79936844 None:intergenic
TAATAATTTCTCAGGTTTGT+GGG 0.400581 3_3:+79936686 Msa0476170:intron
TTGACTTTAAAACAAATTGC+GGG 0.400742 3_3:+79937150 Msa0476170:three_prime_UTR
CGAGCACGCAATGTTATGTT+GGG 0.408081 3_3:-79936528 None:intergenic
ATAACCGGATGATGGAGTTC+TGG 0.411644 3_3:-79937687 None:intergenic
CAGTCTCCTCGGGAAGTAGC+TGG 0.414848 3_3:-79936476 None:intergenic
AATTAGGGAGCCAATGTAAA+GGG 0.416529 3_3:-79937541 None:intergenic
TGTTAACTTGTGGAGCAAAA+TGG 0.418912 3_3:+79935579 Msa0476170:CDS
GAAAGAGAATGCAAAGAAAT+GGG 0.419006 3_3:+79935520 Msa0476170:five_prime_UTR
CATATGGCAGATCTTGGAAT+TGG 0.419770 3_3:-79937349 None:intergenic
TTGAGGTGAGGGGTGTAAAC+AGG 0.422172 3_3:-79936200 None:intergenic
TCAAGATGAGCTGATACTTC+TGG 0.423594 3_3:-79936739 None:intergenic
TTAAAAGCTCTGGTTGGTAT+TGG 0.428809 3_3:-79937503 None:intergenic
AGTGTTGTTTCGTGCACATA+TGG 0.429109 3_3:-79937365 None:intergenic
ATAATAATTTCTCAGGTTTG+TGG 0.429279 3_3:+79936685 Msa0476170:intron
TTTCCACTAGTGGATGGTAC+TGG 0.429481 3_3:-79937725 None:intergenic
ATTTATTGAACCAGGGGTTA+GGG 0.434184 3_3:+79935760 Msa0476170:intron
CGGTGCACTTAACATTTCCC+TGG 0.441926 3_3:+79936762 Msa0476170:CDS
GAAGTATCAGCTCATCTTGA+CGG 0.443659 3_3:+79936742 Msa0476170:CDS
ATGGCAGAGCTCGCCTCACT+TGG 0.443745 3_3:-79937407 None:intergenic
CAGGGGTTAGGGAACAATTC+CGG 0.447536 3_3:+79935771 Msa0476170:intron
ACTAGTGGATGGTACTGGTC+TGG 0.451671 3_3:-79937720 None:intergenic
TGTGGTTTCAGGTGTGAACT+TGG 0.456134 3_3:-79937586 None:intergenic
TGGGAGTGGTTTAAAAGCTC+TGG 0.459193 3_3:-79937513 None:intergenic
CTCAAGTATGTATGCATAGC+AGG 0.460049 3_3:+79936218 Msa0476170:CDS
ATGACATCATCTGAACCAAC+CGG 0.461617 3_3:-79936802 None:intergenic
GGTGACAATGACGTTTCCTT+TGG 0.465904 3_3:+79937306 Msa0476170:three_prime_UTR
CCACCTCCAAAAGGCGTCCC+TGG 0.469313 3_3:+79936122 Msa0476170:CDS
GCGGCATTTCGGAGCCAATC+AGG 0.471608 3_3:-79935867 None:intergenic
ACAAAATGAAGGTATATTCA+AGG 0.471722 3_3:+79936393 Msa0476170:intron
CTCTCTTCAAATACCAATCA+AGG 0.471850 3_3:-79935941 None:intergenic
ATGGGTGGAGAGGAAGTAAA+GGG 0.472828 3_3:+79935538 Msa0476170:five_prime_UTR
GCGAGCACGCAATGTTATGT+TGG 0.473012 3_3:-79936529 None:intergenic
CGTGCTCGCTTTGTTGGCCA+AGG 0.474939 3_3:+79936543 Msa0476170:CDS
AGAGTGCCACGCCAGTAATT+GGG 0.476971 3_3:-79935903 None:intergenic
TCTGGTTTCGTCATAATAAC+CGG 0.477309 3_3:-79937702 None:intergenic
AGGTCAACATAGGTGGTGGA+TGG 0.489246 3_3:-79937252 None:intergenic
GAGACCACTCTATCATTGAT+TGG 0.491581 3_3:+79936005 Msa0476170:CDS
GCAAACAGATTAGAAAGGCC+AGG 0.491688 3_3:-79936989 None:intergenic
GTCAACATAGGTGGTGGATG+GGG 0.492035 3_3:-79937250 None:intergenic
CATCTTCAAGCTAATTAAAG+AGG 0.492324 3_3:-79936873 None:intergenic
TCCCACTTCTCCCTTTACAT+TGG 0.494088 3_3:+79937531 Msa0476170:three_prime_UTR
TCATTGATTGGTCACTCGGC+TGG 0.494886 3_3:+79936017 Msa0476170:CDS
GGTTATAGTAATCGTGTTTG+AGG 0.495157 3_3:-79937632 None:intergenic
TGCTACTGGTATGTCTATAG+AGG 0.497405 3_3:+79937009 Msa0476170:three_prime_UTR
GATTGGCTCCGAAATGCCGC+TGG 0.497694 3_3:+79935870 Msa0476170:CDS
CACCTCATTGTTGCATTGTG+TGG 0.500114 3_3:-79937794 None:intergenic
ATCACAAAGCAATATTTCCC+TGG 0.502138 3_3:+79936971 Msa0476170:three_prime_UTR
GACGGCGGGCCGATAGTTGT+TGG 0.503129 3_3:-79935660 None:intergenic
GAAGTATCTGTAGGAAGTGC+AGG 0.505483 3_3:-79936453 None:intergenic
AATGGGTGGAGAGGAAGTAA+AGG 0.506529 3_3:+79935537 Msa0476170:five_prime_UTR
GGGAGTGGTAAACTCCATCC+AGG 0.507069 3_3:-79936780 None:intergenic
CTCAGGAGGTGCTAACTCCA+TGG 0.507697 3_3:-79935985 None:intergenic
GGTCAACATAGGTGGTGGAT+GGG 0.508485 3_3:-79937251 None:intergenic
TTTGACTTTAAAACAAATTG+CGG 0.509309 3_3:+79937149 Msa0476170:three_prime_UTR
GGGGAAGGACGAGCGAGAGA+GGG 0.510533 3_3:-79937230 None:intergenic
TCATAGGTCAACATAGGTGG+TGG 0.511524 3_3:-79937256 None:intergenic
GGTCGGGTTATTGATACCAT+TGG 0.515490 3_3:+79937285 Msa0476170:three_prime_UTR
TTGATAATAGCAGTCTCCTC+GGG 0.515621 3_3:-79936486 None:intergenic
GCACTTAACATTTCCCTGGA+TGG 0.518025 3_3:+79936766 Msa0476170:CDS
TTGGTCACTCGGCTGGAGGA+TGG 0.518671 3_3:+79936024 Msa0476170:CDS
CTGGTGTTATCGATCAAACC+AGG 0.522198 3_3:+79936141 Msa0476170:CDS
AATATTGTTGAACATAATCA+AGG 0.524897 3_3:-79936169 None:intergenic
CCAATCAGGTCTTGACACCT+TGG 0.525622 3_3:-79935853 None:intergenic
CAAAATGAAGGTATATTCAA+GGG 0.525750 3_3:+79936394 Msa0476170:intron
TCGGCCCGCCGTCATTCTCC+CGG 0.526986 3_3:+79935670 Msa0476170:CDS
ATCAATGATAGAGTGGTCTC+AGG 0.527336 3_3:-79936002 None:intergenic
CCCCTGATGTGTTGGAACAA+TGG 0.527934 3_3:+79936842 Msa0476170:CDS
CAGGAGCCCGAGGTGTTGTG+TGG 0.528223 3_3:-79937442 None:intergenic
AGCCAATGTAAAGGGAGAAG+TGG 0.529925 3_3:-79937533 None:intergenic
TTGTGGGCAAGCAGATGTAT+GGG 0.530004 3_3:+79936702 Msa0476170:CDS
TCTATCATTGATTGGTCACT+CGG 0.533151 3_3:+79936013 Msa0476170:CDS
TTCAAATACCAATCAAGGAC+AGG 0.534115 3_3:-79935936 None:intergenic
CCACAGGACCTTCTCTATAA+CGG 0.536446 3_3:+79937604 Msa0476170:three_prime_UTR
TGATGTTTGCTTTATTTGGG+TGG 0.537376 3_3:-79937653 None:intergenic
CAAAGTGGAATGATGTAGGC+AGG 0.537556 3_3:-79937461 None:intergenic
CAATTAGGGAGCCAATGTAA+AGG 0.538764 3_3:-79937542 None:intergenic
CCTCATCATCCACCTCCAAA+AGG 0.539353 3_3:+79936113 Msa0476170:CDS
CTGCTTCCACCAACAACTAT+CGG 0.539905 3_3:+79935651 Msa0476170:CDS
TCCATTGTTCCAACACATCA+GGG 0.540776 3_3:-79936843 None:intergenic
AGGTCTTGCCGTTATAGAGA+AGG 0.542300 3_3:-79937612 None:intergenic
TTCCGGTGACTACCAGAAGC+TGG 0.544893 3_3:+79935788 Msa0476170:CDS
TGCATACATACTTGAGGTGA+GGG 0.545124 3_3:-79936211 None:intergenic
GTTTCAGGTGTGAACTTGGA+TGG 0.545358 3_3:-79937582 None:intergenic
ATGCAAAGAAATGGGTGGAG+AGG 0.546001 3_3:+79935528 Msa0476170:five_prime_UTR
GTATGGTTCCCCTGATGTGT+TGG 0.547140 3_3:+79936834 Msa0476170:CDS
TCGTCATAATAACCGGATGA+TGG 0.547892 3_3:-79937695 None:intergenic
CAAGCAGATGTATGGGGCGA+TGG 0.548229 3_3:+79936709 Msa0476170:CDS
TTTGATAATAGCAGTCTCCT+CGG 0.548689 3_3:-79936487 None:intergenic
CTGGTTTGATCGATAACACC+AGG 0.550685 3_3:-79936140 None:intergenic
CTCCAGCTTCTGGTAGTCAC+CGG 0.551919 3_3:-79935790 None:intergenic
TTGAACCCACACAACACCTC+GGG 0.552718 3_3:+79937436 Msa0476170:three_prime_UTR
CCAAGGTGTCAAGACCTGAT+TGG 0.553014 3_3:+79935853 Msa0476170:CDS
GAAGACAGTGAGCATTTGGA+TGG 0.553333 3_3:-79935620 None:intergenic
AGGTCAAAGTGGAATGATGT+AGG 0.553939 3_3:-79937465 None:intergenic
TCAACATAGGTGGTGGATGG+GGG 0.558890 3_3:-79937249 None:intergenic
GGATGGAGTTTACCACTCCC+CGG 0.562006 3_3:+79936783 Msa0476170:CDS
GAGACTAACCGGGAGAATGA+CGG 0.567802 3_3:-79935678 None:intergenic
AGTCTCCTCGGGAAGTAGCT+GGG 0.569738 3_3:-79936475 None:intergenic
AACATAATCAAGGAGACCCC+TGG 0.569925 3_3:-79936159 None:intergenic
ATCGATCCCAATTACTGGCG+TGG 0.571483 3_3:+79935897 Msa0476170:CDS
GGCGGGCCGATAGTTGTTGG+TGG 0.571827 3_3:-79935657 None:intergenic
CATCTGAACCAACCGGGGAG+TGG 0.574033 3_3:-79936795 None:intergenic
ACATTGGCTCCCTAATTGAA+AGG 0.574505 3_3:+79937547 Msa0476170:three_prime_UTR
AGTTGATGATGCTGTTCAAG+AGG 0.575707 3_3:+79935962 Msa0476170:CDS
GAAGGACGAGCGAGAGAGGG+AGG 0.575747 3_3:-79937227 None:intergenic
CGTGTCCACAGTTGTTGCCA+AGG 0.576292 3_3:+79935836 Msa0476170:CDS
ATAGACGGACGCATCTCCGC+TGG 0.578928 3_3:+79935483 None:intergenic
AGGAGCCCGAGGTGTTGTGT+GGG 0.579065 3_3:-79937441 None:intergenic
GCCAATGTAAAGGGAGAAGT+GGG 0.579690 3_3:-79937532 None:intergenic
ACAACACTTTGAGTCAACAT+TGG 0.580572 3_3:+79937380 Msa0476170:three_prime_UTR
ATTGAACCCACACAACACCT+CGG 0.585451 3_3:+79937435 Msa0476170:three_prime_UTR
GGAGTTTACCACTCCCCGGT+TGG 0.585654 3_3:+79936787 Msa0476170:CDS
CAGTAGCAAACAGATTAGAA+AGG 0.590323 3_3:-79936994 None:intergenic
TGACATCATCTGAACCAACC+GGG 0.591852 3_3:-79936801 None:intergenic
TGATGCTGTTCAAGAGGCCA+TGG 0.593740 3_3:+79935968 Msa0476170:CDS
TGTTGGCCAAGGATACAAGC+AGG 0.599233 3_3:+79936554 Msa0476170:CDS
GGAAACGTCATTGTCACCAA+TGG 0.600949 3_3:-79937301 None:intergenic
GATGTCATTAGACCATGGTA+TGG 0.601444 3_3:+79936817 Msa0476170:CDS
TACCAATCAAGGACAGGCGT+TGG 0.602600 3_3:-79935930 None:intergenic
CGAGCAGTGATGTTAACTTG+TGG 0.605981 3_3:+79935569 Msa0476170:exon
TTGATTGGTCACTCGGCTGG+AGG 0.606373 3_3:+79936020 Msa0476170:CDS
CACAATGCAACAATGAGGTG+AGG 0.609573 3_3:+79937797 Msa0476170:three_prime_UTR
TGACACCTTGGCAACAACTG+TGG 0.611400 3_3:-79935841 None:intergenic
GACTTTAAAACAAATTGCGG+GGG 0.614576 3_3:+79937152 Msa0476170:three_prime_UTR
CTGCTATGCATACATACTTG+AGG 0.615240 3_3:-79936217 None:intergenic
TGACTTTAAAACAAATTGCG+GGG 0.616636 3_3:+79937151 Msa0476170:three_prime_UTR
ATGCATACATACTTGAGGTG+AGG 0.617128 3_3:-79936212 None:intergenic
AGAGAATGCAAAGAAATGGG+TGG 0.618620 3_3:+79935523 Msa0476170:five_prime_UTR
AGACCAGTACCATCCACTAG+TGG 0.620478 3_3:+79937722 Msa0476170:three_prime_UTR
CAAACAGATTAGAAAGGCCA+GGG 0.620778 3_3:-79936988 None:intergenic
TGTAAAGGGAGAAGTGGGAG+TGG 0.624059 3_3:-79937527 None:intergenic
AAAATGAAGGTATATTCAAG+GGG 0.625084 3_3:+79936395 Msa0476170:intron
AGCACGCAATGTTATGTTGG+GGG 0.626405 3_3:-79936526 None:intergenic
AGTGGTTTAAAAGCTCTGGT+TGG 0.626654 3_3:-79937509 None:intergenic
GAGCACGCAATGTTATGTTG+GGG 0.634026 3_3:-79936527 None:intergenic
ATGATGTAGGCAGGAGCCCG+AGG 0.636021 3_3:-79937452 None:intergenic
AAGTTCACACCTGAAACCAC+AGG 0.636034 3_3:+79937588 Msa0476170:three_prime_UTR
TACTTCCCAGCTACTTCCCG+AGG 0.636324 3_3:+79936470 Msa0476170:CDS
AGTAGCTGGGAAGTATCTGT+AGG 0.636586 3_3:-79936462 None:intergenic
CCGTTATAGAGAAGGTCCTG+TGG 0.639432 3_3:-79937604 None:intergenic
GCAACTCTGAACAATAACTA+CGG 0.639683 3_3:+79935813 Msa0476170:CDS
ACAATGCAACAATGAGGTGA+GGG 0.640849 3_3:+79937798 Msa0476170:three_prime_UTR
TCTGCTGTGAAAGCTCATTG+TGG 0.641729 3_3:-79937757 None:intergenic
TGGCGGGAGTGAACGATCAG+CGG 0.643847 3_3:-79937847 None:intergenic
CGGGAGTGAACGATCAGCGG+CGG 0.644975 3_3:-79937844 None:intergenic
GTGACCAATCAATGATAGAG+TGG 0.646895 3_3:-79936009 None:intergenic
CAACATTGGAGTGCCAAGTG+AGG 0.648949 3_3:+79937394 Msa0476170:three_prime_UTR
TTTGGTGGTTGAGGTCAAAG+TGG 0.651685 3_3:-79937476 None:intergenic
AATGATAGAGTGGTCTCAGG+AGG 0.654021 3_3:-79935999 None:intergenic
TGTGGGCAAGCAGATGTATG+GGG 0.663496 3_3:+79936703 Msa0476170:CDS
AGTATGTATGCATAGCAGGA+AGG 0.664109 3_3:+79936222 Msa0476170:CDS
TGGTGTTATCGATCAAACCA+GGG 0.665729 3_3:+79936142 Msa0476170:CDS
CAGATGATGTCATTAGACCA+TGG 0.669037 3_3:+79936812 Msa0476170:CDS
GACATCATCTGAACCAACCG+GGG 0.670989 3_3:-79936800 None:intergenic
CTAACCGGGAGAATGACGGC+GGG 0.672855 3_3:-79935674 None:intergenic
TGTGTGGGTTCAATGAAGCA+TGG 0.677511 3_3:-79937426 None:intergenic
GGAGTGGTAAACTCCATCCA+GGG 0.679305 3_3:-79936779 None:intergenic
TCTGTATATGCAGCAATTTG+GGG 0.680712 3_3:+79936055 Msa0476170:CDS
GCATTTGGATGGAATTGGAG+AGG 0.682203 3_3:-79935609 None:intergenic
TCTATTCTACTAGTTACCAG+CGG 0.684416 3_3:-79935499 None:intergenic
CCATTGTTCCAACACATCAG+GGG 0.693490 3_3:-79936842 None:intergenic
TGCCACACAATGCAACAATG+AGG 0.694054 3_3:+79937792 Msa0476170:three_prime_UTR
GCATACATACTTGAGGTGAG+GGG 0.697105 3_3:-79936210 None:intergenic
ACTAACCGGGAGAATGACGG+CGG 0.699406 3_3:-79935675 None:intergenic
GGTGTTATCGATCAAACCAG+GGG 0.713378 3_3:+79936143 Msa0476170:CDS
CGGTGACTACCAGAAGCTGG+AGG 0.713933 3_3:+79935791 Msa0476170:CDS
ACATCAGGGGAACCATACCA+TGG 0.720174 3_3:-79936829 None:intergenic
ATTGGGATCGATCAAACCAG+CGG 0.724154 3_3:-79935886 None:intergenic
TGGTTTGATCGATAACACCA+GGG 0.758878 3_3:-79936139 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATTTTATTATTTA+AGG + chr3_3:79937179-79937198 Msa0476170:three_prime_UTR 0.0%
!!! TTTTTAAATTTTATTATTTA+AGG + chr3_3:79937179-79937198 Msa0476170:three_prime_UTR 0.0%
!! AGTTAATAACAATGATATAT+TGG - chr3_3:79936084-79936103 None:intergenic 15.0%
!! AGAAATTATTATTAGAACTT+TGG - chr3_3:79936677-79936696 None:intergenic 15.0%
!!! ATGAAAATCATTTTCTATAA+TGG - chr3_3:79936920-79936939 None:intergenic 15.0%
!! AGTTAATAACAATGATATAT+TGG - chr3_3:79936084-79936103 None:intergenic 15.0%
!! AGAAATTATTATTAGAACTT+TGG - chr3_3:79936677-79936696 None:intergenic 15.0%
!!! ATGAAAATCATTTTCTATAA+TGG - chr3_3:79936920-79936939 None:intergenic 15.0%
!!! ATATCATTGTTATTAACTCT+TGG + chr3_3:79936086-79936105 Msa0476170:CDS 20.0%
!! AATATTGTTGAACATAATCA+AGG - chr3_3:79936172-79936191 None:intergenic 20.0%
!! TTGTATAGTAAGTTATGTTT+GGG - chr3_3:79936348-79936367 None:intergenic 20.0%
!! ATTGTATAGTAAGTTATGTT+TGG - chr3_3:79936349-79936368 None:intergenic 20.0%
!!! TAGTTTTGGCTATAAATTAA+CGG - chr3_3:79936602-79936621 None:intergenic 20.0%
!! TTAATTTATAGCCAAAACTA+TGG + chr3_3:79936602-79936621 Msa0476170:intron 20.0%
!!! AGTTCTAATAATAATTTCTC+AGG + chr3_3:79936678-79936697 Msa0476170:intron 20.0%
!! TTTCATTCTTCTTGTATTTA+TGG + chr3_3:79936934-79936953 Msa0476170:three_prime_UTR 20.0%
!!! ATAACCTCATTGATATTTTT+AGG + chr3_3:79937034-79937053 Msa0476170:three_prime_UTR 20.0%
!!! TAACCTCATTGATATTTTTA+GGG + chr3_3:79937035-79937054 Msa0476170:three_prime_UTR 20.0%
!!! TTTGACTTTAAAACAAATTG+CGG + chr3_3:79937149-79937168 Msa0476170:three_prime_UTR 20.0%
!!! ATATCATTGTTATTAACTCT+TGG + chr3_3:79936086-79936105 Msa0476170:CDS 20.0%
!! AATATTGTTGAACATAATCA+AGG - chr3_3:79936172-79936191 None:intergenic 20.0%
!! TTGTATAGTAAGTTATGTTT+GGG - chr3_3:79936348-79936367 None:intergenic 20.0%
!! ATTGTATAGTAAGTTATGTT+TGG - chr3_3:79936349-79936368 None:intergenic 20.0%
!!! TAGTTTTGGCTATAAATTAA+CGG - chr3_3:79936602-79936621 None:intergenic 20.0%
!! TTAATTTATAGCCAAAACTA+TGG + chr3_3:79936602-79936621 Msa0476170:intron 20.0%
!!! AGTTCTAATAATAATTTCTC+AGG + chr3_3:79936678-79936697 Msa0476170:intron 20.0%
!! TTTCATTCTTCTTGTATTTA+TGG + chr3_3:79936934-79936953 Msa0476170:three_prime_UTR 20.0%
!!! ATAACCTCATTGATATTTTT+AGG + chr3_3:79937034-79937053 Msa0476170:three_prime_UTR 20.0%
!!! TAACCTCATTGATATTTTTA+GGG + chr3_3:79937035-79937054 Msa0476170:three_prime_UTR 20.0%
!!! TTTGACTTTAAAACAAATTG+CGG + chr3_3:79937149-79937168 Msa0476170:three_prime_UTR 20.0%
!! GTTCTTTATTTATTGAACCA+GGG + chr3_3:79935753-79935772 Msa0476170:intron 25.0%
!! TTCTTTATTTATTGAACCAG+GGG + chr3_3:79935754-79935773 Msa0476170:intron 25.0%
!!! TCAAAAAAGACTACTTTTGA+GGG - chr3_3:79936282-79936301 None:intergenic 25.0%
!!! ATCAAAAAAGACTACTTTTG+AGG - chr3_3:79936283-79936302 None:intergenic 25.0%
! CATTTCTTACTACAAAATGA+AGG + chr3_3:79936382-79936401 Msa0476170:intron 25.0%
!! ACAAAATGAAGGTATATTCA+AGG + chr3_3:79936393-79936412 Msa0476170:intron 25.0%
!! CAAAATGAAGGTATATTCAA+GGG + chr3_3:79936394-79936413 Msa0476170:intron 25.0%
!! AAAATGAAGGTATATTCAAG+GGG + chr3_3:79936395-79936414 Msa0476170:intron 25.0%
! ATAATAATTTCTCAGGTTTG+TGG + chr3_3:79936685-79936704 Msa0476170:intron 25.0%
! TAATAATTTCTCAGGTTTGT+GGG + chr3_3:79936686-79936705 Msa0476170:intron 25.0%
!!! TTGACTTTAAAACAAATTGC+GGG + chr3_3:79937150-79937169 Msa0476170:three_prime_UTR 25.0%
! GGATATGTATTTAAAAACGA+AGG + chr3_3:79937200-79937219 Msa0476170:three_prime_UTR 25.0%
!!! ATTTTTTCATAGGTCAACAT+AGG - chr3_3:79937265-79937284 None:intergenic 25.0%
! TATGTTGACCTATGAAAAAA+TGG + chr3_3:79937264-79937283 Msa0476170:three_prime_UTR 25.0%
!!! TCATGATGTTTGCTTTATTT+GGG - chr3_3:79937659-79937678 None:intergenic 25.0%
!! TTCATGATGTTTGCTTTATT+TGG - chr3_3:79937660-79937679 None:intergenic 25.0%
!! GTTCTTTATTTATTGAACCA+GGG + chr3_3:79935753-79935772 Msa0476170:intron 25.0%
!! TTCTTTATTTATTGAACCAG+GGG + chr3_3:79935754-79935773 Msa0476170:intron 25.0%
!!! TCAAAAAAGACTACTTTTGA+GGG - chr3_3:79936282-79936301 None:intergenic 25.0%
!!! ATCAAAAAAGACTACTTTTG+AGG - chr3_3:79936283-79936302 None:intergenic 25.0%
! CATTTCTTACTACAAAATGA+AGG + chr3_3:79936382-79936401 Msa0476170:intron 25.0%
!! ACAAAATGAAGGTATATTCA+AGG + chr3_3:79936393-79936412 Msa0476170:intron 25.0%
!! CAAAATGAAGGTATATTCAA+GGG + chr3_3:79936394-79936413 Msa0476170:intron 25.0%
!! AAAATGAAGGTATATTCAAG+GGG + chr3_3:79936395-79936414 Msa0476170:intron 25.0%
! ATAATAATTTCTCAGGTTTG+TGG + chr3_3:79936685-79936704 Msa0476170:intron 25.0%
! TAATAATTTCTCAGGTTTGT+GGG + chr3_3:79936686-79936705 Msa0476170:intron 25.0%
!!! TTGACTTTAAAACAAATTGC+GGG + chr3_3:79937150-79937169 Msa0476170:three_prime_UTR 25.0%
! GGATATGTATTTAAAAACGA+AGG + chr3_3:79937200-79937219 Msa0476170:three_prime_UTR 25.0%
!!! ATTTTTTCATAGGTCAACAT+AGG - chr3_3:79937265-79937284 None:intergenic 25.0%
! TATGTTGACCTATGAAAAAA+TGG + chr3_3:79937264-79937283 Msa0476170:three_prime_UTR 25.0%
!!! TCATGATGTTTGCTTTATTT+GGG - chr3_3:79937659-79937678 None:intergenic 25.0%
!! TTCATGATGTTTGCTTTATT+TGG - chr3_3:79937660-79937679 None:intergenic 25.0%
AGAAAGAGAATGCAAAGAAA+TGG + chr3_3:79935519-79935538 Msa0476170:five_prime_UTR 30.0%
GAAAGAGAATGCAAAGAAAT+GGG + chr3_3:79935520-79935539 Msa0476170:five_prime_UTR 30.0%
AAAGAGAAATAGAGACTAAC+CGG - chr3_3:79935692-79935711 None:intergenic 30.0%
! GGTTCTTTATTTATTGAACC+AGG + chr3_3:79935752-79935771 Msa0476170:intron 30.0%
ATAGTAAGTTATGTTTGGGT+TGG - chr3_3:79936344-79936363 None:intergenic 30.0%
! TGGATTTGAGTTTCCAAAAA+GGG - chr3_3:79936424-79936443 None:intergenic 30.0%
! TTGGATTTGAGTTTCCAAAA+AGG - chr3_3:79936425-79936444 None:intergenic 30.0%
TTATTTGCTTGTGATAGATG+CGG + chr3_3:79936639-79936658 Msa0476170:intron 30.0%
CATCTTCAAGCTAATTAAAG+AGG - chr3_3:79936876-79936895 None:intergenic 30.0%
GATCCCTAAAAATATCAATG+AGG - chr3_3:79937041-79937060 None:intergenic 30.0%
!! TGACTTTAAAACAAATTGCG+GGG + chr3_3:79937151-79937170 Msa0476170:three_prime_UTR 30.0%
TTGACCTATGAAAAAATGGT+CGG + chr3_3:79937268-79937287 Msa0476170:three_prime_UTR 30.0%
!! GAAGAAATTTTGATCACCAA+AGG - chr3_3:79937325-79937344 None:intergenic 30.0%
AGAAAGAGAATGCAAAGAAA+TGG + chr3_3:79935519-79935538 Msa0476170:five_prime_UTR 30.0%
GAAAGAGAATGCAAAGAAAT+GGG + chr3_3:79935520-79935539 Msa0476170:five_prime_UTR 30.0%
AAAGAGAAATAGAGACTAAC+CGG - chr3_3:79935692-79935711 None:intergenic 30.0%
! GGTTCTTTATTTATTGAACC+AGG + chr3_3:79935752-79935771 Msa0476170:intron 30.0%
ATAGTAAGTTATGTTTGGGT+TGG - chr3_3:79936344-79936363 None:intergenic 30.0%
! TGGATTTGAGTTTCCAAAAA+GGG - chr3_3:79936424-79936443 None:intergenic 30.0%
! TTGGATTTGAGTTTCCAAAA+AGG - chr3_3:79936425-79936444 None:intergenic 30.0%
TTATTTGCTTGTGATAGATG+CGG + chr3_3:79936639-79936658 Msa0476170:intron 30.0%
CATCTTCAAGCTAATTAAAG+AGG - chr3_3:79936876-79936895 None:intergenic 30.0%
GATCCCTAAAAATATCAATG+AGG - chr3_3:79937041-79937060 None:intergenic 30.0%
!! TGACTTTAAAACAAATTGCG+GGG + chr3_3:79937151-79937170 Msa0476170:three_prime_UTR 30.0%
TTGACCTATGAAAAAATGGT+CGG + chr3_3:79937268-79937287 Msa0476170:three_prime_UTR 30.0%
!! GAAGAAATTTTGATCACCAA+AGG - chr3_3:79937325-79937344 None:intergenic 30.0%
TCTATTCTACTAGTTACCAG+CGG - chr3_3:79935502-79935521 None:intergenic 35.0%
!! TGTTAACTTGTGGAGCAAAA+TGG + chr3_3:79935579-79935598 Msa0476170:CDS 35.0%
AAGAGAAATAGAGACTAACC+GGG - chr3_3:79935691-79935710 None:intergenic 35.0%
TATTTATTGAACCAGGGGTT+AGG + chr3_3:79935759-79935778 Msa0476170:intron 35.0%
ATTTATTGAACCAGGGGTTA+GGG + chr3_3:79935760-79935779 Msa0476170:intron 35.0%
GCAACTCTGAACAATAACTA+CGG + chr3_3:79935813-79935832 Msa0476170:CDS 35.0%
TTCAAATACCAATCAAGGAC+AGG - chr3_3:79935939-79935958 None:intergenic 35.0%
CTCTCTTCAAATACCAATCA+AGG - chr3_3:79935944-79935963 None:intergenic 35.0%
! TCTATCATTGATTGGTCACT+CGG + chr3_3:79936013-79936032 Msa0476170:CDS 35.0%
GTCTGTATATGCAGCAATTT+GGG + chr3_3:79936054-79936073 Msa0476170:CDS 35.0%
TCTGTATATGCAGCAATTTG+GGG + chr3_3:79936055-79936074 Msa0476170:CDS 35.0%
! GGATTTGAGTTTCCAAAAAG+GGG - chr3_3:79936423-79936442 None:intergenic 35.0%
! TTTGATAATAGCAGTCTCCT+CGG - chr3_3:79936490-79936509 None:intergenic 35.0%
ATCACAAAGCAATATTTCCC+TGG + chr3_3:79936971-79936990 Msa0476170:three_prime_UTR 35.0%
CAGTAGCAAACAGATTAGAA+AGG - chr3_3:79936997-79937016 None:intergenic 35.0%
! CTTTCTAATCTGTTTGCTAC+TGG + chr3_3:79936995-79937014 Msa0476170:three_prime_UTR 35.0%
!! GACTTTAAAACAAATTGCGG+GGG + chr3_3:79937152-79937171 Msa0476170:three_prime_UTR 35.0%
! TTTTCATAGGTCAACATAGG+TGG - chr3_3:79937262-79937281 None:intergenic 35.0%
TGACCTATGAAAAAATGGTC+GGG + chr3_3:79937269-79937288 Msa0476170:three_prime_UTR 35.0%
!!! TAACCCGACCATTTTTTCAT+AGG - chr3_3:79937275-79937294 None:intergenic 35.0%
ACAACACTTTGAGTCAACAT+TGG + chr3_3:79937380-79937399 Msa0476170:three_prime_UTR 35.0%
! TTAAAAGCTCTGGTTGGTAT+TGG - chr3_3:79937506-79937525 None:intergenic 35.0%
AATTAGGGAGCCAATGTAAA+GGG - chr3_3:79937544-79937563 None:intergenic 35.0%
GAAGAGCTTCCTTTCAATTA+GGG - chr3_3:79937559-79937578 None:intergenic 35.0%
TGAAGAGCTTCCTTTCAATT+AGG - chr3_3:79937560-79937579 None:intergenic 35.0%
GGTTATAGTAATCGTGTTTG+AGG - chr3_3:79937635-79937654 None:intergenic 35.0%
!! TGATGTTTGCTTTATTTGGG+TGG - chr3_3:79937656-79937675 None:intergenic 35.0%
! TCTGGTTTCGTCATAATAAC+CGG - chr3_3:79937705-79937724 None:intergenic 35.0%
!!! GAATGTGTTTTTTCCACTAG+TGG - chr3_3:79937738-79937757 None:intergenic 35.0%
TCTATTCTACTAGTTACCAG+CGG - chr3_3:79935502-79935521 None:intergenic 35.0%
!! TGTTAACTTGTGGAGCAAAA+TGG + chr3_3:79935579-79935598 Msa0476170:CDS 35.0%
AAGAGAAATAGAGACTAACC+GGG - chr3_3:79935691-79935710 None:intergenic 35.0%
TATTTATTGAACCAGGGGTT+AGG + chr3_3:79935759-79935778 Msa0476170:intron 35.0%
ATTTATTGAACCAGGGGTTA+GGG + chr3_3:79935760-79935779 Msa0476170:intron 35.0%
GCAACTCTGAACAATAACTA+CGG + chr3_3:79935813-79935832 Msa0476170:CDS 35.0%
TTCAAATACCAATCAAGGAC+AGG - chr3_3:79935939-79935958 None:intergenic 35.0%
CTCTCTTCAAATACCAATCA+AGG - chr3_3:79935944-79935963 None:intergenic 35.0%
! TCTATCATTGATTGGTCACT+CGG + chr3_3:79936013-79936032 Msa0476170:CDS 35.0%
GTCTGTATATGCAGCAATTT+GGG + chr3_3:79936054-79936073 Msa0476170:CDS 35.0%
TCTGTATATGCAGCAATTTG+GGG + chr3_3:79936055-79936074 Msa0476170:CDS 35.0%
! GGATTTGAGTTTCCAAAAAG+GGG - chr3_3:79936423-79936442 None:intergenic 35.0%
! TTTGATAATAGCAGTCTCCT+CGG - chr3_3:79936490-79936509 None:intergenic 35.0%
ATCACAAAGCAATATTTCCC+TGG + chr3_3:79936971-79936990 Msa0476170:three_prime_UTR 35.0%
CAGTAGCAAACAGATTAGAA+AGG - chr3_3:79936997-79937016 None:intergenic 35.0%
! CTTTCTAATCTGTTTGCTAC+TGG + chr3_3:79936995-79937014 Msa0476170:three_prime_UTR 35.0%
!! GACTTTAAAACAAATTGCGG+GGG + chr3_3:79937152-79937171 Msa0476170:three_prime_UTR 35.0%
! TTTTCATAGGTCAACATAGG+TGG - chr3_3:79937262-79937281 None:intergenic 35.0%
TGACCTATGAAAAAATGGTC+GGG + chr3_3:79937269-79937288 Msa0476170:three_prime_UTR 35.0%
!!! TAACCCGACCATTTTTTCAT+AGG - chr3_3:79937275-79937294 None:intergenic 35.0%
ACAACACTTTGAGTCAACAT+TGG + chr3_3:79937380-79937399 Msa0476170:three_prime_UTR 35.0%
! TTAAAAGCTCTGGTTGGTAT+TGG - chr3_3:79937506-79937525 None:intergenic 35.0%
AATTAGGGAGCCAATGTAAA+GGG - chr3_3:79937544-79937563 None:intergenic 35.0%
GAAGAGCTTCCTTTCAATTA+GGG - chr3_3:79937559-79937578 None:intergenic 35.0%
TGAAGAGCTTCCTTTCAATT+AGG - chr3_3:79937560-79937579 None:intergenic 35.0%
GGTTATAGTAATCGTGTTTG+AGG - chr3_3:79937635-79937654 None:intergenic 35.0%
!! TGATGTTTGCTTTATTTGGG+TGG - chr3_3:79937656-79937675 None:intergenic 35.0%
! TCTGGTTTCGTCATAATAAC+CGG - chr3_3:79937705-79937724 None:intergenic 35.0%
!!! GAATGTGTTTTTTCCACTAG+TGG - chr3_3:79937738-79937757 None:intergenic 35.0%
AGAGAATGCAAAGAAATGGG+TGG + chr3_3:79935523-79935542 Msa0476170:five_prime_UTR 40.0%
AGTGAGCATTTGGATGGAAT+TGG - chr3_3:79935617-79935636 None:intergenic 40.0%
AGAAGAAGACAGTGAGCATT+TGG - chr3_3:79935627-79935646 None:intergenic 40.0%
AACCAAATGAATGCGATGTG+AGG - chr3_3:79935736-79935755 None:intergenic 40.0%
GTTTGATCGATCCCAATTAC+TGG + chr3_3:79935892-79935911 Msa0476170:CDS 40.0%
!! AGTTGATGATGCTGTTCAAG+AGG + chr3_3:79935962-79935981 Msa0476170:CDS 40.0%
ATCAATGATAGAGTGGTCTC+AGG - chr3_3:79936005-79936024 None:intergenic 40.0%
GAGACCACTCTATCATTGAT+TGG + chr3_3:79936005-79936024 Msa0476170:CDS 40.0%
GTGACCAATCAATGATAGAG+TGG - chr3_3:79936012-79936031 None:intergenic 40.0%
CGTCTGTATATGCAGCAATT+TGG + chr3_3:79936053-79936072 Msa0476170:CDS 40.0%
TGGTTTGATCGATAACACCA+GGG - chr3_3:79936142-79936161 None:intergenic 40.0%
!! TGGTGTTATCGATCAAACCA+GGG + chr3_3:79936142-79936161 Msa0476170:CDS 40.0%
TGCATACATACTTGAGGTGA+GGG - chr3_3:79936214-79936233 None:intergenic 40.0%
ATGCATACATACTTGAGGTG+AGG - chr3_3:79936215-79936234 None:intergenic 40.0%
CTGCTATGCATACATACTTG+AGG - chr3_3:79936220-79936239 None:intergenic 40.0%
CTCAAGTATGTATGCATAGC+AGG + chr3_3:79936218-79936237 Msa0476170:CDS 40.0%
AGTATGTATGCATAGCAGGA+AGG + chr3_3:79936222-79936241 Msa0476170:CDS 40.0%
AACACACACACACTCTTTCA+AGG + chr3_3:79936246-79936265 Msa0476170:intron 40.0%
!! AAGTTATGTTTGGGTTGGCA+TGG - chr3_3:79936339-79936358 None:intergenic 40.0%
! TTGATAATAGCAGTCTCCTC+GGG - chr3_3:79936489-79936508 None:intergenic 40.0%
! CAGTTTGCACACCATAGTTT+TGG - chr3_3:79936616-79936635 None:intergenic 40.0%
TCAAGATGAGCTGATACTTC+TGG - chr3_3:79936742-79936761 None:intergenic 40.0%
! GAAGTATCAGCTCATCTTGA+CGG + chr3_3:79936742-79936761 Msa0476170:CDS 40.0%
ATGACATCATCTGAACCAAC+CGG - chr3_3:79936805-79936824 None:intergenic 40.0%
CAGATGATGTCATTAGACCA+TGG + chr3_3:79936812-79936831 Msa0476170:CDS 40.0%
GATGTCATTAGACCATGGTA+TGG + chr3_3:79936817-79936836 Msa0476170:CDS 40.0%
TCCATTGTTCCAACACATCA+GGG - chr3_3:79936846-79936865 None:intergenic 40.0%
ATCCATTGTTCCAACACATC+AGG - chr3_3:79936847-79936866 None:intergenic 40.0%
CAAACAGATTAGAAAGGCCA+GGG - chr3_3:79936991-79937010 None:intergenic 40.0%
TGCTACTGGTATGTCTATAG+AGG + chr3_3:79937009-79937028 Msa0476170:three_prime_UTR 40.0%
CATATGGCAGATCTTGGAAT+TGG - chr3_3:79937352-79937371 None:intergenic 40.0%
!! AGTGTTGTTTCGTGCACATA+TGG - chr3_3:79937368-79937387 None:intergenic 40.0%
AGGTCAAAGTGGAATGATGT+AGG - chr3_3:79937468-79937487 None:intergenic 40.0%
! AGTGGTTTAAAAGCTCTGGT+TGG - chr3_3:79937512-79937531 None:intergenic 40.0%
CAATTAGGGAGCCAATGTAA+AGG - chr3_3:79937545-79937564 None:intergenic 40.0%
!! ACATTGGCTCCCTAATTGAA+AGG + chr3_3:79937547-79937566 Msa0476170:three_prime_UTR 40.0%
! TTTTCCAGAACTCCATCATC+CGG + chr3_3:79937683-79937702 Msa0476170:three_prime_UTR 40.0%
TCGTCATAATAACCGGATGA+TGG - chr3_3:79937698-79937717 None:intergenic 40.0%
!!! GTGTTTTTTCCACTAGTGGA+TGG - chr3_3:79937734-79937753 None:intergenic 40.0%
ACAATGCAACAATGAGGTGA+GGG + chr3_3:79937798-79937817 Msa0476170:three_prime_UTR 40.0%
AGAGAATGCAAAGAAATGGG+TGG + chr3_3:79935523-79935542 Msa0476170:five_prime_UTR 40.0%
AGTGAGCATTTGGATGGAAT+TGG - chr3_3:79935617-79935636 None:intergenic 40.0%
AGAAGAAGACAGTGAGCATT+TGG - chr3_3:79935627-79935646 None:intergenic 40.0%
AACCAAATGAATGCGATGTG+AGG - chr3_3:79935736-79935755 None:intergenic 40.0%
GTTTGATCGATCCCAATTAC+TGG + chr3_3:79935892-79935911 Msa0476170:CDS 40.0%
!! AGTTGATGATGCTGTTCAAG+AGG + chr3_3:79935962-79935981 Msa0476170:CDS 40.0%
ATCAATGATAGAGTGGTCTC+AGG - chr3_3:79936005-79936024 None:intergenic 40.0%
GAGACCACTCTATCATTGAT+TGG + chr3_3:79936005-79936024 Msa0476170:CDS 40.0%
GTGACCAATCAATGATAGAG+TGG - chr3_3:79936012-79936031 None:intergenic 40.0%
CGTCTGTATATGCAGCAATT+TGG + chr3_3:79936053-79936072 Msa0476170:CDS 40.0%
TGGTTTGATCGATAACACCA+GGG - chr3_3:79936142-79936161 None:intergenic 40.0%
!! TGGTGTTATCGATCAAACCA+GGG + chr3_3:79936142-79936161 Msa0476170:CDS 40.0%
TGCATACATACTTGAGGTGA+GGG - chr3_3:79936214-79936233 None:intergenic 40.0%
ATGCATACATACTTGAGGTG+AGG - chr3_3:79936215-79936234 None:intergenic 40.0%
CTGCTATGCATACATACTTG+AGG - chr3_3:79936220-79936239 None:intergenic 40.0%
CTCAAGTATGTATGCATAGC+AGG + chr3_3:79936218-79936237 Msa0476170:CDS 40.0%
AGTATGTATGCATAGCAGGA+AGG + chr3_3:79936222-79936241 Msa0476170:CDS 40.0%
AACACACACACACTCTTTCA+AGG + chr3_3:79936246-79936265 Msa0476170:intron 40.0%
!! AAGTTATGTTTGGGTTGGCA+TGG - chr3_3:79936339-79936358 None:intergenic 40.0%
! TTGATAATAGCAGTCTCCTC+GGG - chr3_3:79936489-79936508 None:intergenic 40.0%
! CAGTTTGCACACCATAGTTT+TGG - chr3_3:79936616-79936635 None:intergenic 40.0%
TCAAGATGAGCTGATACTTC+TGG - chr3_3:79936742-79936761 None:intergenic 40.0%
! GAAGTATCAGCTCATCTTGA+CGG + chr3_3:79936742-79936761 Msa0476170:CDS 40.0%
ATGACATCATCTGAACCAAC+CGG - chr3_3:79936805-79936824 None:intergenic 40.0%
CAGATGATGTCATTAGACCA+TGG + chr3_3:79936812-79936831 Msa0476170:CDS 40.0%
GATGTCATTAGACCATGGTA+TGG + chr3_3:79936817-79936836 Msa0476170:CDS 40.0%
TCCATTGTTCCAACACATCA+GGG - chr3_3:79936846-79936865 None:intergenic 40.0%
ATCCATTGTTCCAACACATC+AGG - chr3_3:79936847-79936866 None:intergenic 40.0%
CAAACAGATTAGAAAGGCCA+GGG - chr3_3:79936991-79937010 None:intergenic 40.0%
TGCTACTGGTATGTCTATAG+AGG + chr3_3:79937009-79937028 Msa0476170:three_prime_UTR 40.0%
CATATGGCAGATCTTGGAAT+TGG - chr3_3:79937352-79937371 None:intergenic 40.0%
!! AGTGTTGTTTCGTGCACATA+TGG - chr3_3:79937368-79937387 None:intergenic 40.0%
AGGTCAAAGTGGAATGATGT+AGG - chr3_3:79937468-79937487 None:intergenic 40.0%
! AGTGGTTTAAAAGCTCTGGT+TGG - chr3_3:79937512-79937531 None:intergenic 40.0%
CAATTAGGGAGCCAATGTAA+AGG - chr3_3:79937545-79937564 None:intergenic 40.0%
!! ACATTGGCTCCCTAATTGAA+AGG + chr3_3:79937547-79937566 Msa0476170:three_prime_UTR 40.0%
! TTTTCCAGAACTCCATCATC+CGG + chr3_3:79937683-79937702 Msa0476170:three_prime_UTR 40.0%
TCGTCATAATAACCGGATGA+TGG - chr3_3:79937698-79937717 None:intergenic 40.0%
!!! GTGTTTTTTCCACTAGTGGA+TGG - chr3_3:79937734-79937753 None:intergenic 40.0%
ACAATGCAACAATGAGGTGA+GGG + chr3_3:79937798-79937817 Msa0476170:three_prime_UTR 40.0%
ATGCAAAGAAATGGGTGGAG+AGG + chr3_3:79935528-79935547 Msa0476170:five_prime_UTR 45.0%
AATGGGTGGAGAGGAAGTAA+AGG + chr3_3:79935537-79935556 Msa0476170:five_prime_UTR 45.0%
ATGGGTGGAGAGGAAGTAAA+GGG + chr3_3:79935538-79935557 Msa0476170:five_prime_UTR 45.0%
! CGAGCAGTGATGTTAACTTG+TGG + chr3_3:79935569-79935588 Msa0476170:exon 45.0%
GCATTTGGATGGAATTGGAG+AGG - chr3_3:79935612-79935631 None:intergenic 45.0%
GAAGACAGTGAGCATTTGGA+TGG - chr3_3:79935623-79935642 None:intergenic 45.0%
CTGCTTCCACCAACAACTAT+CGG + chr3_3:79935651-79935670 Msa0476170:CDS 45.0%
CTCCTCACATCGCATTCATT+TGG + chr3_3:79935731-79935750 Msa0476170:intron 45.0%
ATTGGGATCGATCAAACCAG+CGG - chr3_3:79935889-79935908 None:intergenic 45.0%
AATGATAGAGTGGTCTCAGG+AGG - chr3_3:79936002-79936021 None:intergenic 45.0%
!! TTTTGGAGGTGGATGATGAG+GGG - chr3_3:79936114-79936133 None:intergenic 45.0%
!! CTTTTGGAGGTGGATGATGA+GGG - chr3_3:79936115-79936134 None:intergenic 45.0%
! CTGGTTTGATCGATAACACC+AGG - chr3_3:79936143-79936162 None:intergenic 45.0%
!! CTGGTGTTATCGATCAAACC+AGG + chr3_3:79936141-79936160 Msa0476170:CDS 45.0%
! GGTGTTATCGATCAAACCAG+GGG + chr3_3:79936143-79936162 Msa0476170:CDS 45.0%
AACATAATCAAGGAGACCCC+TGG - chr3_3:79936162-79936181 None:intergenic 45.0%
GCATACATACTTGAGGTGAG+GGG - chr3_3:79936213-79936232 None:intergenic 45.0%
! GAAGTATCTGTAGGAAGTGC+AGG - chr3_3:79936456-79936475 None:intergenic 45.0%
!! AGTAGCTGGGAAGTATCTGT+AGG - chr3_3:79936465-79936484 None:intergenic 45.0%
TGTTATGTTGGGGGAAGAAG+TGG - chr3_3:79936520-79936539 None:intergenic 45.0%
AGCACGCAATGTTATGTTGG+GGG - chr3_3:79936529-79936548 None:intergenic 45.0%
GAGCACGCAATGTTATGTTG+GGG - chr3_3:79936530-79936549 None:intergenic 45.0%
CGAGCACGCAATGTTATGTT+GGG - chr3_3:79936531-79936550 None:intergenic 45.0%
CATTCACCTGCTTGTATCCT+TGG - chr3_3:79936563-79936582 None:intergenic 45.0%
TTTGTGGGCAAGCAGATGTA+TGG + chr3_3:79936701-79936720 Msa0476170:CDS 45.0%
TTGTGGGCAAGCAGATGTAT+GGG + chr3_3:79936702-79936721 Msa0476170:CDS 45.0%
GCACTTAACATTTCCCTGGA+TGG + chr3_3:79936766-79936785 Msa0476170:CDS 45.0%
TGACATCATCTGAACCAACC+GGG - chr3_3:79936804-79936823 None:intergenic 45.0%
CCATTGTTCCAACACATCAG+GGG - chr3_3:79936845-79936864 None:intergenic 45.0%
GCAAACAGATTAGAAAGGCC+AGG - chr3_3:79936992-79937011 None:intergenic 45.0%
TCATAGGTCAACATAGGTGG+TGG - chr3_3:79937259-79937278 None:intergenic 45.0%
GGTCGGGTTATTGATACCAT+TGG + chr3_3:79937285-79937304 Msa0476170:three_prime_UTR 45.0%
GGAAACGTCATTGTCACCAA+TGG - chr3_3:79937304-79937323 None:intergenic 45.0%
GGTGACAATGACGTTTCCTT+TGG + chr3_3:79937306-79937325 Msa0476170:three_prime_UTR 45.0%
TGTGTGGGTTCAATGAAGCA+TGG - chr3_3:79937429-79937448 None:intergenic 45.0%
ATTGAACCCACACAACACCT+CGG + chr3_3:79937435-79937454 Msa0476170:three_prime_UTR 45.0%
CAAAGTGGAATGATGTAGGC+AGG - chr3_3:79937464-79937483 None:intergenic 45.0%
! TTTGGTGGTTGAGGTCAAAG+TGG - chr3_3:79937479-79937498 None:intergenic 45.0%
!! ATTGGTGCTTTTGGTGGTTG+AGG - chr3_3:79937488-79937507 None:intergenic 45.0%
!!! GTTGGTATTGGTGCTTTTGG+TGG - chr3_3:79937494-79937513 None:intergenic 45.0%
!!! CTGGTTGGTATTGGTGCTTT+TGG - chr3_3:79937497-79937516 None:intergenic 45.0%
TGGGAGTGGTTTAAAAGCTC+TGG - chr3_3:79937516-79937535 None:intergenic 45.0%
TCCCACTTCTCCCTTTACAT+TGG + chr3_3:79937531-79937550 Msa0476170:three_prime_UTR 45.0%
GCCAATGTAAAGGGAGAAGT+GGG - chr3_3:79937535-79937554 None:intergenic 45.0%
AGCCAATGTAAAGGGAGAAG+TGG - chr3_3:79937536-79937555 None:intergenic 45.0%
! GTTTCAGGTGTGAACTTGGA+TGG - chr3_3:79937585-79937604 None:intergenic 45.0%
! TGTGGTTTCAGGTGTGAACT+TGG - chr3_3:79937589-79937608 None:intergenic 45.0%
AAGTTCACACCTGAAACCAC+AGG + chr3_3:79937588-79937607 Msa0476170:three_prime_UTR 45.0%
CCACAGGACCTTCTCTATAA+CGG + chr3_3:79937604-79937623 Msa0476170:three_prime_UTR 45.0%
AGGTCTTGCCGTTATAGAGA+AGG - chr3_3:79937615-79937634 None:intergenic 45.0%
!! ATAACCGGATGATGGAGTTC+TGG - chr3_3:79937690-79937709 None:intergenic 45.0%
! TTTCCACTAGTGGATGGTAC+TGG - chr3_3:79937728-79937747 None:intergenic 45.0%
TCTGCTGTGAAAGCTCATTG+TGG - chr3_3:79937760-79937779 None:intergenic 45.0%
TGCCACACAATGCAACAATG+AGG + chr3_3:79937792-79937811 Msa0476170:three_prime_UTR 45.0%
CACCTCATTGTTGCATTGTG+TGG - chr3_3:79937797-79937816 None:intergenic 45.0%
CACAATGCAACAATGAGGTG+AGG + chr3_3:79937797-79937816 Msa0476170:three_prime_UTR 45.0%
ATGCAAAGAAATGGGTGGAG+AGG + chr3_3:79935528-79935547 Msa0476170:five_prime_UTR 45.0%
AATGGGTGGAGAGGAAGTAA+AGG + chr3_3:79935537-79935556 Msa0476170:five_prime_UTR 45.0%
ATGGGTGGAGAGGAAGTAAA+GGG + chr3_3:79935538-79935557 Msa0476170:five_prime_UTR 45.0%
! CGAGCAGTGATGTTAACTTG+TGG + chr3_3:79935569-79935588 Msa0476170:exon 45.0%
GCATTTGGATGGAATTGGAG+AGG - chr3_3:79935612-79935631 None:intergenic 45.0%
GAAGACAGTGAGCATTTGGA+TGG - chr3_3:79935623-79935642 None:intergenic 45.0%
CTGCTTCCACCAACAACTAT+CGG + chr3_3:79935651-79935670 Msa0476170:CDS 45.0%
CTCCTCACATCGCATTCATT+TGG + chr3_3:79935731-79935750 Msa0476170:intron 45.0%
ATTGGGATCGATCAAACCAG+CGG - chr3_3:79935889-79935908 None:intergenic 45.0%
AATGATAGAGTGGTCTCAGG+AGG - chr3_3:79936002-79936021 None:intergenic 45.0%
!! TTTTGGAGGTGGATGATGAG+GGG - chr3_3:79936114-79936133 None:intergenic 45.0%
!! CTTTTGGAGGTGGATGATGA+GGG - chr3_3:79936115-79936134 None:intergenic 45.0%
! CTGGTTTGATCGATAACACC+AGG - chr3_3:79936143-79936162 None:intergenic 45.0%
!! CTGGTGTTATCGATCAAACC+AGG + chr3_3:79936141-79936160 Msa0476170:CDS 45.0%
! GGTGTTATCGATCAAACCAG+GGG + chr3_3:79936143-79936162 Msa0476170:CDS 45.0%
AACATAATCAAGGAGACCCC+TGG - chr3_3:79936162-79936181 None:intergenic 45.0%
GCATACATACTTGAGGTGAG+GGG - chr3_3:79936213-79936232 None:intergenic 45.0%
! GAAGTATCTGTAGGAAGTGC+AGG - chr3_3:79936456-79936475 None:intergenic 45.0%
!! AGTAGCTGGGAAGTATCTGT+AGG - chr3_3:79936465-79936484 None:intergenic 45.0%
TGTTATGTTGGGGGAAGAAG+TGG - chr3_3:79936520-79936539 None:intergenic 45.0%
AGCACGCAATGTTATGTTGG+GGG - chr3_3:79936529-79936548 None:intergenic 45.0%
GAGCACGCAATGTTATGTTG+GGG - chr3_3:79936530-79936549 None:intergenic 45.0%
CGAGCACGCAATGTTATGTT+GGG - chr3_3:79936531-79936550 None:intergenic 45.0%
CATTCACCTGCTTGTATCCT+TGG - chr3_3:79936563-79936582 None:intergenic 45.0%
TTTGTGGGCAAGCAGATGTA+TGG + chr3_3:79936701-79936720 Msa0476170:CDS 45.0%
TTGTGGGCAAGCAGATGTAT+GGG + chr3_3:79936702-79936721 Msa0476170:CDS 45.0%
GCACTTAACATTTCCCTGGA+TGG + chr3_3:79936766-79936785 Msa0476170:CDS 45.0%
TGACATCATCTGAACCAACC+GGG - chr3_3:79936804-79936823 None:intergenic 45.0%
CCATTGTTCCAACACATCAG+GGG - chr3_3:79936845-79936864 None:intergenic 45.0%
GCAAACAGATTAGAAAGGCC+AGG - chr3_3:79936992-79937011 None:intergenic 45.0%
TCATAGGTCAACATAGGTGG+TGG - chr3_3:79937259-79937278 None:intergenic 45.0%
GGTCGGGTTATTGATACCAT+TGG + chr3_3:79937285-79937304 Msa0476170:three_prime_UTR 45.0%
GGAAACGTCATTGTCACCAA+TGG - chr3_3:79937304-79937323 None:intergenic 45.0%
GGTGACAATGACGTTTCCTT+TGG + chr3_3:79937306-79937325 Msa0476170:three_prime_UTR 45.0%
TGTGTGGGTTCAATGAAGCA+TGG - chr3_3:79937429-79937448 None:intergenic 45.0%
ATTGAACCCACACAACACCT+CGG + chr3_3:79937435-79937454 Msa0476170:three_prime_UTR 45.0%
CAAAGTGGAATGATGTAGGC+AGG - chr3_3:79937464-79937483 None:intergenic 45.0%
! TTTGGTGGTTGAGGTCAAAG+TGG - chr3_3:79937479-79937498 None:intergenic 45.0%
!! ATTGGTGCTTTTGGTGGTTG+AGG - chr3_3:79937488-79937507 None:intergenic 45.0%
!!! GTTGGTATTGGTGCTTTTGG+TGG - chr3_3:79937494-79937513 None:intergenic 45.0%
!!! CTGGTTGGTATTGGTGCTTT+TGG - chr3_3:79937497-79937516 None:intergenic 45.0%
TGGGAGTGGTTTAAAAGCTC+TGG - chr3_3:79937516-79937535 None:intergenic 45.0%
TCCCACTTCTCCCTTTACAT+TGG + chr3_3:79937531-79937550 Msa0476170:three_prime_UTR 45.0%
GCCAATGTAAAGGGAGAAGT+GGG - chr3_3:79937535-79937554 None:intergenic 45.0%
AGCCAATGTAAAGGGAGAAG+TGG - chr3_3:79937536-79937555 None:intergenic 45.0%
! GTTTCAGGTGTGAACTTGGA+TGG - chr3_3:79937585-79937604 None:intergenic 45.0%
! TGTGGTTTCAGGTGTGAACT+TGG - chr3_3:79937589-79937608 None:intergenic 45.0%
AAGTTCACACCTGAAACCAC+AGG + chr3_3:79937588-79937607 Msa0476170:three_prime_UTR 45.0%
CCACAGGACCTTCTCTATAA+CGG + chr3_3:79937604-79937623 Msa0476170:three_prime_UTR 45.0%
AGGTCTTGCCGTTATAGAGA+AGG - chr3_3:79937615-79937634 None:intergenic 45.0%
!! ATAACCGGATGATGGAGTTC+TGG - chr3_3:79937690-79937709 None:intergenic 45.0%
! TTTCCACTAGTGGATGGTAC+TGG - chr3_3:79937728-79937747 None:intergenic 45.0%
TCTGCTGTGAAAGCTCATTG+TGG - chr3_3:79937760-79937779 None:intergenic 45.0%
TGCCACACAATGCAACAATG+AGG + chr3_3:79937792-79937811 Msa0476170:three_prime_UTR 45.0%
CACCTCATTGTTGCATTGTG+TGG - chr3_3:79937797-79937816 None:intergenic 45.0%
CACAATGCAACAATGAGGTG+AGG + chr3_3:79937797-79937816 Msa0476170:three_prime_UTR 45.0%
GAGACTAACCGGGAGAATGA+CGG - chr3_3:79935681-79935700 None:intergenic 50.0%
CAGGGGTTAGGGAACAATTC+CGG + chr3_3:79935771-79935790 Msa0476170:intron 50.0%
TGACACCTTGGCAACAACTG+TGG - chr3_3:79935844-79935863 None:intergenic 50.0%
CCAATCAGGTCTTGACACCT+TGG - chr3_3:79935856-79935875 None:intergenic 50.0%
! CCAAGGTGTCAAGACCTGAT+TGG + chr3_3:79935853-79935872 Msa0476170:CDS 50.0%
CGATCAAACCAGCGGCATTT+CGG - chr3_3:79935881-79935900 None:intergenic 50.0%
ATCGATCCCAATTACTGGCG+TGG + chr3_3:79935897-79935916 Msa0476170:CDS 50.0%
! AGAGTGCCACGCCAGTAATT+GGG - chr3_3:79935906-79935925 None:intergenic 50.0%
!! AAGAGTGCCACGCCAGTAAT+TGG - chr3_3:79935907-79935926 None:intergenic 50.0%
AACCAACGCCTGTCCTTGAT+TGG + chr3_3:79935928-79935947 Msa0476170:CDS 50.0%
TACCAATCAAGGACAGGCGT+TGG - chr3_3:79935933-79935952 None:intergenic 50.0%
TGATGCTGTTCAAGAGGCCA+TGG + chr3_3:79935968-79935987 Msa0476170:CDS 50.0%
! TCATTGATTGGTCACTCGGC+TGG + chr3_3:79936017-79936036 Msa0476170:CDS 50.0%
!! CCTTTTGGAGGTGGATGATG+AGG - chr3_3:79936116-79936135 None:intergenic 50.0%
CCTCATCATCCACCTCCAAA+AGG + chr3_3:79936113-79936132 Msa0476170:CDS 50.0%
! ATAACACCAGGGACGCCTTT+TGG - chr3_3:79936131-79936150 None:intergenic 50.0%
! TTGAGGTGAGGGGTGTAAAC+AGG - chr3_3:79936203-79936222 None:intergenic 50.0%
! ATTCAAGGGGCTCCCCTTTT+TGG + chr3_3:79936408-79936427 Msa0476170:CDS 50.0%
GCGAGCACGCAATGTTATGT+TGG - chr3_3:79936532-79936551 None:intergenic 50.0%
ACATTGCGTGCTCGCTTTGT+TGG + chr3_3:79936537-79936556 Msa0476170:CDS 50.0%
TGTTGGCCAAGGATACAAGC+AGG + chr3_3:79936554-79936573 Msa0476170:CDS 50.0%
TGTGGGCAAGCAGATGTATG+GGG + chr3_3:79936703-79936722 Msa0476170:CDS 50.0%
CGGTGCACTTAACATTTCCC+TGG + chr3_3:79936762-79936781 Msa0476170:CDS 50.0%
GGAGTGGTAAACTCCATCCA+GGG - chr3_3:79936782-79936801 None:intergenic 50.0%
GACATCATCTGAACCAACCG+GGG - chr3_3:79936803-79936822 None:intergenic 50.0%
ACATCAGGGGAACCATACCA+TGG - chr3_3:79936832-79936851 None:intergenic 50.0%
GTATGGTTCCCCTGATGTGT+TGG + chr3_3:79936834-79936853 Msa0476170:CDS 50.0%
CCCCTGATGTGTTGGAACAA+TGG + chr3_3:79936842-79936861 Msa0476170:CDS 50.0%
!! TCAACATAGGTGGTGGATGG+GGG - chr3_3:79937252-79937271 None:intergenic 50.0%
!! GTCAACATAGGTGGTGGATG+GGG - chr3_3:79937253-79937272 None:intergenic 50.0%
!! GGTCAACATAGGTGGTGGAT+GGG - chr3_3:79937254-79937273 None:intergenic 50.0%
!! AGGTCAACATAGGTGGTGGA+TGG - chr3_3:79937255-79937274 None:intergenic 50.0%
CGTGCACATATGGCAGATCT+TGG - chr3_3:79937358-79937377 None:intergenic 50.0%
! CAACATTGGAGTGCCAAGTG+AGG + chr3_3:79937394-79937413 Msa0476170:three_prime_UTR 50.0%
TTGAACCCACACAACACCTC+GGG + chr3_3:79937436-79937455 Msa0476170:three_prime_UTR 50.0%
TGTAAAGGGAGAAGTGGGAG+TGG - chr3_3:79937530-79937549 None:intergenic 50.0%
AGAGAAGGTCCTGTGGTTTC+AGG - chr3_3:79937600-79937619 None:intergenic 50.0%
CCGTTATAGAGAAGGTCCTG+TGG - chr3_3:79937607-79937626 None:intergenic 50.0%
!! ACTAGTGGATGGTACTGGTC+TGG - chr3_3:79937723-79937742 None:intergenic 50.0%
AGACCAGTACCATCCACTAG+TGG + chr3_3:79937722-79937741 Msa0476170:three_prime_UTR 50.0%
ACTAGTTACCAGCGGAGATG+CGG - chr3_3:79935494-79935513 None:intergenic 50.0%
GAGACTAACCGGGAGAATGA+CGG - chr3_3:79935681-79935700 None:intergenic 50.0%
CAGGGGTTAGGGAACAATTC+CGG + chr3_3:79935771-79935790 Msa0476170:intron 50.0%
TGACACCTTGGCAACAACTG+TGG - chr3_3:79935844-79935863 None:intergenic 50.0%
CCAATCAGGTCTTGACACCT+TGG - chr3_3:79935856-79935875 None:intergenic 50.0%
! CCAAGGTGTCAAGACCTGAT+TGG + chr3_3:79935853-79935872 Msa0476170:CDS 50.0%
CGATCAAACCAGCGGCATTT+CGG - chr3_3:79935881-79935900 None:intergenic 50.0%
ATCGATCCCAATTACTGGCG+TGG + chr3_3:79935897-79935916 Msa0476170:CDS 50.0%
! AGAGTGCCACGCCAGTAATT+GGG - chr3_3:79935906-79935925 None:intergenic 50.0%
!! AAGAGTGCCACGCCAGTAAT+TGG - chr3_3:79935907-79935926 None:intergenic 50.0%
AACCAACGCCTGTCCTTGAT+TGG + chr3_3:79935928-79935947 Msa0476170:CDS 50.0%
TACCAATCAAGGACAGGCGT+TGG - chr3_3:79935933-79935952 None:intergenic 50.0%
TGATGCTGTTCAAGAGGCCA+TGG + chr3_3:79935968-79935987 Msa0476170:CDS 50.0%
! TCATTGATTGGTCACTCGGC+TGG + chr3_3:79936017-79936036 Msa0476170:CDS 50.0%
!! CCTTTTGGAGGTGGATGATG+AGG - chr3_3:79936116-79936135 None:intergenic 50.0%
CCTCATCATCCACCTCCAAA+AGG + chr3_3:79936113-79936132 Msa0476170:CDS 50.0%
! ATAACACCAGGGACGCCTTT+TGG - chr3_3:79936131-79936150 None:intergenic 50.0%
! TTGAGGTGAGGGGTGTAAAC+AGG - chr3_3:79936203-79936222 None:intergenic 50.0%
! ATTCAAGGGGCTCCCCTTTT+TGG + chr3_3:79936408-79936427 Msa0476170:CDS 50.0%
GCGAGCACGCAATGTTATGT+TGG - chr3_3:79936532-79936551 None:intergenic 50.0%
ACATTGCGTGCTCGCTTTGT+TGG + chr3_3:79936537-79936556 Msa0476170:CDS 50.0%
TGTTGGCCAAGGATACAAGC+AGG + chr3_3:79936554-79936573 Msa0476170:CDS 50.0%
TGTGGGCAAGCAGATGTATG+GGG + chr3_3:79936703-79936722 Msa0476170:CDS 50.0%
CGGTGCACTTAACATTTCCC+TGG + chr3_3:79936762-79936781 Msa0476170:CDS 50.0%
GGAGTGGTAAACTCCATCCA+GGG - chr3_3:79936782-79936801 None:intergenic 50.0%
GACATCATCTGAACCAACCG+GGG - chr3_3:79936803-79936822 None:intergenic 50.0%
ACATCAGGGGAACCATACCA+TGG - chr3_3:79936832-79936851 None:intergenic 50.0%
GTATGGTTCCCCTGATGTGT+TGG + chr3_3:79936834-79936853 Msa0476170:CDS 50.0%
CCCCTGATGTGTTGGAACAA+TGG + chr3_3:79936842-79936861 Msa0476170:CDS 50.0%
!! TCAACATAGGTGGTGGATGG+GGG - chr3_3:79937252-79937271 None:intergenic 50.0%
!! GTCAACATAGGTGGTGGATG+GGG - chr3_3:79937253-79937272 None:intergenic 50.0%
!! GGTCAACATAGGTGGTGGAT+GGG - chr3_3:79937254-79937273 None:intergenic 50.0%
!! AGGTCAACATAGGTGGTGGA+TGG - chr3_3:79937255-79937274 None:intergenic 50.0%
CGTGCACATATGGCAGATCT+TGG - chr3_3:79937358-79937377 None:intergenic 50.0%
! CAACATTGGAGTGCCAAGTG+AGG + chr3_3:79937394-79937413 Msa0476170:three_prime_UTR 50.0%
TTGAACCCACACAACACCTC+GGG + chr3_3:79937436-79937455 Msa0476170:three_prime_UTR 50.0%
TGTAAAGGGAGAAGTGGGAG+TGG - chr3_3:79937530-79937549 None:intergenic 50.0%
AGAGAAGGTCCTGTGGTTTC+AGG - chr3_3:79937600-79937619 None:intergenic 50.0%
CCGTTATAGAGAAGGTCCTG+TGG - chr3_3:79937607-79937626 None:intergenic 50.0%
!! ACTAGTGGATGGTACTGGTC+TGG - chr3_3:79937723-79937742 None:intergenic 50.0%
AGACCAGTACCATCCACTAG+TGG + chr3_3:79937722-79937741 Msa0476170:three_prime_UTR 50.0%
ACTAACCGGGAGAATGACGG+CGG - chr3_3:79935678-79935697 None:intergenic 55.0%
CGGAATTGTTCCCTAACCCC+TGG - chr3_3:79935773-79935792 None:intergenic 55.0%
TTCCGGTGACTACCAGAAGC+TGG + chr3_3:79935788-79935807 Msa0476170:CDS 55.0%
CTCCAGCTTCTGGTAGTCAC+CGG - chr3_3:79935793-79935812 None:intergenic 55.0%
TCAGAGTTGCCTCCAGCTTC+TGG - chr3_3:79935803-79935822 None:intergenic 55.0%
CGTGTCCACAGTTGTTGCCA+AGG + chr3_3:79935836-79935855 Msa0476170:CDS 55.0%
!! CTCAGGAGGTGCTAACTCCA+TGG - chr3_3:79935988-79936007 None:intergenic 55.0%
! TTGATTGGTCACTCGGCTGG+AGG + chr3_3:79936020-79936039 Msa0476170:CDS 55.0%
! GGAAGTGCAGGCTCAGCATT+TGG - chr3_3:79936444-79936463 None:intergenic 55.0%
TACTTCCCAGCTACTTCCCG+AGG + chr3_3:79936470-79936489 Msa0476170:CDS 55.0%
AGTCTCCTCGGGAAGTAGCT+GGG - chr3_3:79936478-79936497 None:intergenic 55.0%
CAAGCAGATGTATGGGGCGA+TGG + chr3_3:79936709-79936728 Msa0476170:CDS 55.0%
GGGAGTGGTAAACTCCATCC+AGG - chr3_3:79936783-79936802 None:intergenic 55.0%
GGATGGAGTTTACCACTCCC+CGG + chr3_3:79936783-79936802 Msa0476170:CDS 55.0%
ACTAACCGGGAGAATGACGG+CGG - chr3_3:79935678-79935697 None:intergenic 55.0%
CGGAATTGTTCCCTAACCCC+TGG - chr3_3:79935773-79935792 None:intergenic 55.0%
TTCCGGTGACTACCAGAAGC+TGG + chr3_3:79935788-79935807 Msa0476170:CDS 55.0%
CTCCAGCTTCTGGTAGTCAC+CGG - chr3_3:79935793-79935812 None:intergenic 55.0%
TCAGAGTTGCCTCCAGCTTC+TGG - chr3_3:79935803-79935822 None:intergenic 55.0%
CGTGTCCACAGTTGTTGCCA+AGG + chr3_3:79935836-79935855 Msa0476170:CDS 55.0%
!! CTCAGGAGGTGCTAACTCCA+TGG - chr3_3:79935988-79936007 None:intergenic 55.0%
! TTGATTGGTCACTCGGCTGG+AGG + chr3_3:79936020-79936039 Msa0476170:CDS 55.0%
! GGAAGTGCAGGCTCAGCATT+TGG - chr3_3:79936444-79936463 None:intergenic 55.0%
TACTTCCCAGCTACTTCCCG+AGG + chr3_3:79936470-79936489 Msa0476170:CDS 55.0%
AGTCTCCTCGGGAAGTAGCT+GGG - chr3_3:79936478-79936497 None:intergenic 55.0%
CAAGCAGATGTATGGGGCGA+TGG + chr3_3:79936709-79936728 Msa0476170:CDS 55.0%
GGGAGTGGTAAACTCCATCC+AGG - chr3_3:79936783-79936802 None:intergenic 55.0%
GGATGGAGTTTACCACTCCC+CGG + chr3_3:79936783-79936802 Msa0476170:CDS 55.0%
CTAACCGGGAGAATGACGGC+GGG - chr3_3:79935677-79935696 None:intergenic 60.0%
CGGTGACTACCAGAAGCTGG+AGG + chr3_3:79935791-79935810 Msa0476170:CDS 60.0%
GCGGCATTTCGGAGCCAATC+AGG - chr3_3:79935870-79935889 None:intergenic 60.0%
! GATTGGCTCCGAAATGCCGC+TGG + chr3_3:79935870-79935889 Msa0476170:CDS 60.0%
TTGGTCACTCGGCTGGAGGA+TGG + chr3_3:79936024-79936043 Msa0476170:CDS 60.0%
! ACACCAGGGACGCCTTTTGG+AGG - chr3_3:79936128-79936147 None:intergenic 60.0%
CAGTCTCCTCGGGAAGTAGC+TGG - chr3_3:79936479-79936498 None:intergenic 60.0%
! CGTGCTCGCTTTGTTGGCCA+AGG + chr3_3:79936543-79936562 Msa0476170:CDS 60.0%
GGAGTTTACCACTCCCCGGT+TGG + chr3_3:79936787-79936806 Msa0476170:CDS 60.0%
CATCTGAACCAACCGGGGAG+TGG - chr3_3:79936798-79936817 None:intergenic 60.0%
!! CATAGGTGGTGGATGGGGGA+AGG - chr3_3:79937248-79937267 None:intergenic 60.0%
ATGGCAGAGCTCGCCTCACT+TGG - chr3_3:79937410-79937429 None:intergenic 60.0%
!! AGGAGCCCGAGGTGTTGTGT+GGG - chr3_3:79937444-79937463 None:intergenic 60.0%
ATGATGTAGGCAGGAGCCCG+AGG - chr3_3:79937455-79937474 None:intergenic 60.0%
CTAACCGGGAGAATGACGGC+GGG - chr3_3:79935677-79935696 None:intergenic 60.0%
CGGTGACTACCAGAAGCTGG+AGG + chr3_3:79935791-79935810 Msa0476170:CDS 60.0%
GCGGCATTTCGGAGCCAATC+AGG - chr3_3:79935870-79935889 None:intergenic 60.0%
! GATTGGCTCCGAAATGCCGC+TGG + chr3_3:79935870-79935889 Msa0476170:CDS 60.0%
TTGGTCACTCGGCTGGAGGA+TGG + chr3_3:79936024-79936043 Msa0476170:CDS 60.0%
! ACACCAGGGACGCCTTTTGG+AGG - chr3_3:79936128-79936147 None:intergenic 60.0%
CAGTCTCCTCGGGAAGTAGC+TGG - chr3_3:79936479-79936498 None:intergenic 60.0%
! CGTGCTCGCTTTGTTGGCCA+AGG + chr3_3:79936543-79936562 Msa0476170:CDS 60.0%
GGAGTTTACCACTCCCCGGT+TGG + chr3_3:79936787-79936806 Msa0476170:CDS 60.0%
CATCTGAACCAACCGGGGAG+TGG - chr3_3:79936798-79936817 None:intergenic 60.0%
!! CATAGGTGGTGGATGGGGGA+AGG - chr3_3:79937248-79937267 None:intergenic 60.0%
ATGGCAGAGCTCGCCTCACT+TGG - chr3_3:79937410-79937429 None:intergenic 60.0%
!! AGGAGCCCGAGGTGTTGTGT+GGG - chr3_3:79937444-79937463 None:intergenic 60.0%
ATGATGTAGGCAGGAGCCCG+AGG - chr3_3:79937455-79937474 None:intergenic 60.0%
GGCGGGCCGATAGTTGTTGG+TGG - chr3_3:79935660-79935679 None:intergenic 65.0%
GACGGCGGGCCGATAGTTGT+TGG - chr3_3:79935663-79935682 None:intergenic 65.0%
!! CCAGGGACGCCTTTTGGAGG+TGG - chr3_3:79936125-79936144 None:intergenic 65.0%
!! CCACCTCCAAAAGGCGTCCC+TGG + chr3_3:79936122-79936141 Msa0476170:CDS 65.0%
GAAGGACGAGCGAGAGAGGG+AGG - chr3_3:79937230-79937249 None:intergenic 65.0%
GGGGAAGGACGAGCGAGAGA+GGG - chr3_3:79937233-79937252 None:intergenic 65.0%
!! CAGGAGCCCGAGGTGTTGTG+TGG - chr3_3:79937445-79937464 None:intergenic 65.0%
GGCGGGCCGATAGTTGTTGG+TGG - chr3_3:79935660-79935679 None:intergenic 65.0%
GACGGCGGGCCGATAGTTGT+TGG - chr3_3:79935663-79935682 None:intergenic 65.0%
!! CCAGGGACGCCTTTTGGAGG+TGG - chr3_3:79936125-79936144 None:intergenic 65.0%
!! CCACCTCCAAAAGGCGTCCC+TGG + chr3_3:79936122-79936141 Msa0476170:CDS 65.0%
GAAGGACGAGCGAGAGAGGG+AGG - chr3_3:79937230-79937249 None:intergenic 65.0%
GGGGAAGGACGAGCGAGAGA+GGG - chr3_3:79937233-79937252 None:intergenic 65.0%
!! CAGGAGCCCGAGGTGTTGTG+TGG - chr3_3:79937445-79937464 None:intergenic 65.0%
TCGGCCCGCCGTCATTCTCC+CGG + chr3_3:79935670-79935689 Msa0476170:CDS 70.0%
GGGGGAAGGACGAGCGAGAG+AGG - chr3_3:79937234-79937253 None:intergenic 70.0%
TCGGCCCGCCGTCATTCTCC+CGG + chr3_3:79935670-79935689 Msa0476170:CDS 70.0%
GGGGGAAGGACGAGCGAGAG+AGG - chr3_3:79937234-79937253 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 79935492 79937859 79935492 ID=Msa0476170;Name=Msa0476170
chr3_3 mRNA 79935492 79937859 79935492 ID=Msa0476170-mRNA-1;Parent=Msa0476170;Name=Msa0476170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=86|1|1|1|1|1|4|974|313
chr3_3 exon 79935492 79935691 79935492 ID=Msa0476170-mRNA-1:exon:21713;Parent=Msa0476170-mRNA-1
chr3_3 exon 79935774 79936243 79935774 ID=Msa0476170-mRNA-1:exon:21714;Parent=Msa0476170-mRNA-1
chr3_3 exon 79936404 79936575 79936404 ID=Msa0476170-mRNA-1:exon:21715;Parent=Msa0476170-mRNA-1
chr3_3 exon 79936700 79937859 79936700 ID=Msa0476170-mRNA-1:exon:21716;Parent=Msa0476170-mRNA-1
chr3_3 five_prime_UTR 79935492 79935577 79935492 ID=Msa0476170-mRNA-1:five_prime_utr;Parent=Msa0476170-mRNA-1
chr3_3 CDS 79935578 79935691 79935578 ID=Msa0476170-mRNA-1:cds;Parent=Msa0476170-mRNA-1
chr3_3 CDS 79935774 79936243 79935774 ID=Msa0476170-mRNA-1:cds;Parent=Msa0476170-mRNA-1
chr3_3 CDS 79936404 79936575 79936404 ID=Msa0476170-mRNA-1:cds;Parent=Msa0476170-mRNA-1
chr3_3 CDS 79936700 79936885 79936700 ID=Msa0476170-mRNA-1:cds;Parent=Msa0476170-mRNA-1
chr3_3 three_prime_UTR 79936886 79937859 79936886 ID=Msa0476170-mRNA-1:three_prime_utr;Parent=Msa0476170-mRNA-1
Gene Sequence

>Msa0476170

ATGTTAACTTGTGGAGCAAAATGGATGTCAGCCTCTCCAATTCCATCCAAATGCTCACTGTCTTCTTCTTCATCTGCTTCCACCAACAACTATCGGCCCGCCGTCATTCTCCCGGGGTTAGGGAACAATTCCGGTGACTACCAGAAGCTGGAGGCAACTCTGAACAATAACTACGGCGTGTCCACAGTTGTTGCCAAGGTGTCAAGACCTGATTGGCTCCGAAATGCCGCTGGTTTGATCGATCCCAATTACTGGCGTGGCACTCTTCAACCAACGCCTGTCCTTGATTGGTATTTGAAGAGAGTTGATGATGCTGTTCAAGAGGCCATGGAGTTAGCACCTCCTGAGACCACTCTATCATTGATTGGTCACTCGGCTGGAGGATGGCTTGCGCGTCTGTATATGCAGCAATTTGGGGTGTCCAATATATCATTGTTATTAACTCTTGGAACCCCTCATCATCCACCTCCAAAAGGCGTCCCTGGTGTTATCGATCAAACCAGGGGTCTCCTTGATTATGTTCAACAATATTGCTCTAAACCTGTTTACACCCCTCACCTCAAGTATGTATGCATAGCAGGAAGGTATATTCAAGGGGCTCCCCTTTTTGGAAACTCAAATCCAAATGCTGAGCCTGCACTTCCTACAGATACTTCCCAGCTACTTCCCGAGGAGACTGCTATTATCAAAGCTGCAACCACTTCTTCCCCCAACATAACATTGCGTGCTCGCTTTGTTGGCCAAGGATACAAGCAGGTTTGTGGGCAAGCAGATGTATGGGGCGATGGTGTTGTGCCAGAAGTATCAGCTCATCTTGACGGTGCACTTAACATTTCCCTGGATGGAGTTTACCACTCCCCGGTTGGTTCAGATGATGTCATTAGACCATGGTATGGTTCCCCTGATGTGTTGGAACAATGGATAGAACACCTCTTTAATTAG

Protein sequence

>Msa0476170

MLTCGAKWMSASPIPSKCSLSSSSSASTNNYRPAVILPGLGNNSGDYQKLEATLNNNYGVSTVVAKVSRPDWLRNAAGLIDPNYWRGTLQPTPVLDWYLKRVDDAVQEAMELAPPETTLSLIGHSAGGWLARLYMQQFGVSNISLLLTLGTPHHPPPKGVPGVIDQTRGLLDYVQQYCSKPVYTPHLKYVCIAGRYIQGAPLFGNSNPNAEPALPTDTSQLLPEETAIIKAATTSSPNITLRARFVGQGYKQVCGQADVWGDGVVPEVSAHLDGALNISLDGVYHSPVGSDDVIRPWYGSPDVLEQWIEHLFN*