AlfalfaGEDB | Msa0693340

M. sativa cultivar zhongmu-4 / Msa0693340

KEGG: -
GO: -
PFAM: PF01894.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693340	RHN62099.1	87.624	202	3	2	3	204	1	180	1.62e-122	354

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693340	sp\|P0AF48\|YJBQ_ECOLI	52.518	139	63	2	65	203	2	137	1.21e-44	148

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693340	A0A396I916	87.624	202	3	2	3	204	1	180	7.76e-123	354

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005380	Msa0693340	-0.804212	2.407129e-49	-8.615850e-47
Msa0017930	Msa0693340	-0.800047	1.731190e-48	-8.615850e-47
Msa0032710	Msa0693340	-0.804051	2.600138e-49	-8.615850e-47
Msa0033220	Msa0693340	-0.800272	1.557962e-48	-8.615850e-47
Msa0033840	Msa0693340	0.832933	7.123732e-56	-8.615850e-47
Msa0037180	Msa0693340	-0.819273	1.266458e-52	-8.615850e-47
Msa0044160	Msa0693340	-0.800603	1.333797e-48	-8.615850e-47
Msa0048510	Msa0693340	-0.814569	1.441513e-51	-8.615850e-47
Msa0057840	Msa0693340	-0.825851	3.742256e-54	-8.615850e-47
Msa0065670	Msa0693340	0.800945	1.135596e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693340	MtrunA17_Chr4g0043721	87.624	202	3	2	3	204	1	180	1.49e-126	354

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0693340	AT1G21065.1	81.457	151	28	0	54	204	67	217	6.09e-92	268

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Find 68 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATCAACCAAAACGAC+TGG	0.500455	4_4:+62241058	None:intergenic
AAATAAAATGACTAATGATT+TGG	0.299561	4_4:+62237039	None:intergenic
AAATATCAACCAAAACGACT+GGG	0.650300	4_4:+62241059	None:intergenic
AATGTGTGTAGTTTATGTGG+AGG	0.692468	4_4:-62241180	None:intergenic
AATTATATGCACTAAGTGGT+CGG	0.589344	4_4:+62237065	None:intergenic
AATTCGATTGAGGAATGTTT+CGG	0.407385	4_4:+62240416	None:intergenic
ACAAATGGAAAGCTTAACAT+GGG	0.648618	4_4:-62238828	Msa0693340:CDS
ACAACCACTCTTCGTGAGGT+AGG	0.608382	4_4:+62237244	None:intergenic
ACCTTGGAAGCACACTCTAG+AGG	0.633350	4_4:-62240282	Msa0693340:CDS
ACTCAGATTACATTGTAAAA+AGG	0.228703	4_4:+62237125	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTATATTGTCAGATGGAGA+TGG	-	chr4_4:62237021-62237040	Msa0693340:three_prime_UTR	30.0%
TTATATTGTCAGATGGAGAT+GGG	-	chr4_4:62237022-62237041	Msa0693340:three_prime_UTR	30.0%
AAATATCAACCAAAACGACT+GGG	+	chr4_4:62237087-62237106	None:intergenic	30.0%
AAAATATCAACCAAAACGAC+TGG	+	chr4_4:62237088-62237107	None:intergenic	30.0%
GAAAATTGTGAGATTGAGAT+TGG	+	chr4_4:62237427-62237446	None:intergenic	30.0%
TATATACTCACAGAAGAGAT+GGG	+	chr4_4:62237555-62237574	None:intergenic	30.0%
ATATATACTCACAGAAGAGA+TGG	+	chr4_4:62237556-62237575	None:intergenic	30.0%
AATTTGTGCTGAAATGAAGT+TGG	-	chr4_4:62237631-62237650	Msa0693340:intron	30.0%
AATTCGATTGAGGAATGTTT+CGG	+	chr4_4:62237730-62237749	None:intergenic	30.0%
AAGAGAAAATTGCATTACTG+AGG	+	chr4_4:62238206-62238225	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	62236973	62241192	62236973	ID=Msa0693340;Name=Msa0693340
chr4_4	mRNA	62236973	62241192	62236973	ID=Msa0693340-mRNA-1;Parent=Msa0693340;Name=Msa0693340-mRNA-1;_AED=0.30;_eAED=0.30;_QI=61\|1\|1\|1\|1\|1\|8\|252\|204
chr4_4	exon	62236973	62237296	62236973	ID=Msa0693340-mRNA-1:exon:17415;Parent=Msa0693340-mRNA-1
chr4_4	exon	62238818	62238860	62238818	ID=Msa0693340-mRNA-1:exon:17414;Parent=Msa0693340-mRNA-1
chr4_4	exon	62238947	62239001	62238947	ID=Msa0693340-mRNA-1:exon:17413;Parent=Msa0693340-mRNA-1
chr4_4	exon	62240282	62240315	62240282	ID=Msa0693340-mRNA-1:exon:17412;Parent=Msa0693340-mRNA-1
chr4_4	exon	62240407	62240501	62240407	ID=Msa0693340-mRNA-1:exon:17411;Parent=Msa0693340-mRNA-1
chr4_4	exon	62240602	62240662	62240602	ID=Msa0693340-mRNA-1:exon:17410;Parent=Msa0693340-mRNA-1
chr4_4	exon	62240749	62240921	62240749	ID=Msa0693340-mRNA-1:exon:17409;Parent=Msa0693340-mRNA-1
chr4_4	exon	62241050	62241192	62241050	ID=Msa0693340-mRNA-1:exon:17408;Parent=Msa0693340-mRNA-1
chr4_4	five_prime_UTR	62241132	62241192	62241132	ID=Msa0693340-mRNA-1:five_prime_utr;Parent=Msa0693340-mRNA-1
chr4_4	CDS	62241050	62241131	62241050	ID=Msa0693340-mRNA-1:cds;Parent=Msa0693340-mRNA-1
chr4_4	CDS	62240749	62240921	62240749	ID=Msa0693340-mRNA-1:cds;Parent=Msa0693340-mRNA-1
chr4_4	CDS	62240602	62240662	62240602	ID=Msa0693340-mRNA-1:cds;Parent=Msa0693340-mRNA-1
chr4_4	CDS	62240407	62240501	62240407	ID=Msa0693340-mRNA-1:cds;Parent=Msa0693340-mRNA-1
chr4_4	CDS	62240282	62240315	62240282	ID=Msa0693340-mRNA-1:cds;Parent=Msa0693340-mRNA-1
chr4_4	CDS	62238947	62239001	62238947	ID=Msa0693340-mRNA-1:cds;Parent=Msa0693340-mRNA-1
chr4_4	CDS	62238818	62238860	62238818	ID=Msa0693340-mRNA-1:cds;Parent=Msa0693340-mRNA-1
chr4_4	CDS	62237225	62237296	62237225	ID=Msa0693340-mRNA-1:cds;Parent=Msa0693340-mRNA-1
chr4_4	three_prime_UTR	62236973	62237224	62236973	ID=Msa0693340-mRNA-1:three_prime_utr;Parent=Msa0693340-mRNA-1

Gene Sequence

>Msa0693340

ATGGAGATGGGTGTGGAAAGCATAACCAAACGTGTGAGTAGCACTTGCTGCCCAGTCGTTTTGGTTGATATTTTCGACCTGGGAAACATGCAGGTGTCATCACTGTGCGTAGCAAAGTTTCCATTAAGCGTGAAAGCGCAGCACCCAACCTTGAAGACAAAAGAATCCATGGCTGAATCCACCGCTCCCAAATGGGCCCAGAAAACCATCGCTCTACCACCTTACAAACGCGGCTGTCATCTTGTTACTCCCAAGATAGCGAAAGAAATTGAACAGGATCTTTCTGGATTCAAGTGCGGTCTCGCCCATCTCTTCTTGCAGCATACAAGTGCTTCTCTTACTATCAATGAGAATTATGACACTGATGTTCGCGATGATACCGAAACATTCCTCAATCGAATTGTTCCCGAGGGGCCATCTGCACCTTGGAAGCACACTCTAGAGGGTCATGATGACATGCCGGCTCATATTAAGTCATCAATGTTTGGCTGTGCACTCACGATACCAATTACAAATGGAAAGCTTAACATGGGAACCTGGCAGGGTATATGGCTTTGTGAGCACCGGGATCATCCTACCTCACGAAGAGTGGTTGTCACTCTTAATGGAATATGA

Protein sequence

>Msa0693340

MEMGVESITKRVSSTCCPVVLVDIFDLGNMQVSSLCVAKFPLSVKAQHPTLKTKESMAESTAPKWAQKTIALPPYKRGCHLVTPKIAKEIEQDLSGFKCGLAHLFLQHTSASLTINENYDTDVRDDTETFLNRIVPEGPSAPWKHTLEGHDDMPAHIKSSMFGCALTIPITNGKLNMGTWQGIWLCEHRDHPTSRRVVVTLNGI*