AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0233980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233980 MtrunA17_Chr2g0281981 99.042 313 3 0 1 313 1 313 0.0 634
Msa0233980 MtrunA17_Chr4g0047571 71.523 302 73 5 21 313 9 306 1.02e-132 379
Msa0233980 MtrunA17_Chr8g0387061 54.286 315 116 9 8 313 31 326 1.23e-80 248
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233980 AT2G20760.1 56.209 306 106 8 21 313 27 317 8.06e-79 243
Msa0233980 AT2G40060.1 53.509 228 76 4 30 251 25 228 2.31e-70 219
Msa0233980 AT3G51890.1 66.038 159 51 1 101 259 85 240 2.63e-62 198

Find 127 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTCGCAGAGGCTTCTTTC+TGG 0.092482 2_2:+6437588 None:intergenic
TCTTTCTGGGGTTCCTCTGC+TGG 0.195125 2_2:+6437602 None:intergenic
CATTGTAGTACCTGCATTAA+AGG 0.217820 2_2:-6437437 Msa0233980:three_prime_UTR
GTTTGCCGGGCTTAGGGCCT+TGG 0.222402 2_2:+6437822 None:intergenic
TATTAGTTCCTAATGCTTAT+TGG 0.271513 2_2:-6437463 Msa0233980:three_prime_UTR
GAAACATCATCTAAAGTAAC+TGG 0.273669 2_2:-6437680 Msa0233980:CDS
TGAACACTGCATGTGCAAAA+AGG 0.289159 2_2:+6437505 None:intergenic
GGTGACATCGCCGTCGAAAT+TGG 0.302399 2_2:+6440943 None:intergenic
AAGAGGCAGACAAAGCTTAT+TGG 0.306471 2_2:-6437940 Msa0233980:CDS
CGACCTTTATAGGCATGTTT+TGG 0.312515 2_2:-6437227 Msa0233980:three_prime_UTR
TGAGGAGGCTGAGGAGTATA+AGG 0.315912 2_2:-6438159 Msa0233980:CDS
GGTCGCAGAGGCTTCTTTCT+GGG 0.316434 2_2:+6437589 None:intergenic
GGAAAGATCTGTGGGTTTGC+CGG 0.324935 2_2:+6437808 None:intergenic
ACATGTAGATTCAGTGTTCA+TGG 0.339439 2_2:-6437380 Msa0233980:three_prime_UTR
TTCCTCTGCTGGGCCGTTAG+AGG 0.340463 2_2:+6437613 None:intergenic
CACAAGTAATCGACCTTTAT+AGG 0.345031 2_2:-6437237 Msa0233980:three_prime_UTR
AACGATAACGGAAACGGTTA+TGG 0.352071 2_2:-6440812 Msa0233980:CDS
CTCCTTCTCCTCTAGCTCAA+TGG 0.361178 2_2:+6438214 None:intergenic
TCTGTGGGTTTGCCGGGCTT+AGG 0.365337 2_2:+6437815 None:intergenic
AGCTAGAGGAGAAGGAGAAA+AGG 0.369546 2_2:-6438208 Msa0233980:CDS
CGACCAAAACATGCCTATAA+AGG 0.369990 2_2:+6437224 None:intergenic
ATTGGAGTAACCACCGTAAC+CGG 0.372444 2_2:+6440961 None:intergenic
CTGTGGGTTTGCCGGGCTTA+GGG 0.379243 2_2:+6437816 None:intergenic
CCGTTAGAGGCCACATCCTT+TGG 0.394016 2_2:+6437626 None:intergenic
CTTTCTGGGGTTCCTCTGCT+GGG 0.395967 2_2:+6437603 None:intergenic
CTCTCCTTCTCCGTTTGAAT+CGG 0.398479 2_2:-6440852 Msa0233980:CDS
GCAAACCCACAGATCTTTCC+AGG 0.408467 2_2:-6437805 Msa0233980:CDS
TGTTTCTCTCTCTAGAAATT+CGG 0.411241 2_2:+6441085 None:intergenic
GAAAGATCTGTGGGTTTGCC+GGG 0.421847 2_2:+6437809 None:intergenic
GAATCGGTTACTGTAGAAAA+CGG 0.424815 2_2:-6440836 Msa0233980:CDS
AATGTGCTAATGGCTTTGTT+TGG 0.424986 2_2:+6441132 None:intergenic
CAATGCAACCAATAAGCATT+AGG 0.426186 2_2:+6437455 None:intergenic
TGACACTTGGAAAATATATC+AGG 0.433473 2_2:+6437303 None:intergenic
GATCAAGACGACACCTTCTC+CGG 0.433643 2_2:-6440980 Msa0233980:CDS
GCTAGAGGAGAAGGAGAAAA+GGG 0.438393 2_2:-6438207 Msa0233980:CDS
GACGACACCTTCTCCGGTTA+CGG 0.443450 2_2:-6440974 Msa0233980:CDS
TTCATTAAAACCTTTAATGC+AGG 0.445948 2_2:+6437427 None:intergenic
TCAGCAGCTGAAGGTGCATC+AGG 0.447568 2_2:-6437656 Msa0233980:CDS
CTTGTGTTATAGACAATGAC+TGG 0.454759 2_2:+6437254 None:intergenic
GAAGATTATTGAGGAGGCTG+AGG 0.457014 2_2:-6438168 Msa0233980:CDS
TCTTTAGCAGGAGCAGGTGG+TGG 0.458003 2_2:+6437728 None:intergenic
AATGAAATGAAATGTGCTAA+TGG 0.463790 2_2:+6441122 None:intergenic
TAGCAGTATTTGTCGCATCC+TGG 0.466048 2_2:+6437787 None:intergenic
AATCGGTTACTGTAGAAAAC+GGG 0.471773 2_2:-6440835 Msa0233980:CDS
ACAAGGTTCAAAATAGAGAA+AGG 0.472036 2_2:-6438097 Msa0233980:CDS
CCTTCCTCCACCTGGTGAGA+TGG 0.476417 2_2:-6440753 Msa0233980:CDS
AGAAGGAGAGTAACCAGGAT+TGG 0.477559 2_2:+6440865 None:intergenic
GCGTCTTTAGCATCTTTAGC+AGG 0.478410 2_2:+6437716 None:intergenic
TTAGCATCTTTAGCAGGAGC+AGG 0.482630 2_2:+6437722 None:intergenic
GAAGGAGAGTAACCAGGATT+GGG 0.484433 2_2:+6440866 None:intergenic
GTAGAAAACGGGAACGATAA+CGG 0.485632 2_2:-6440824 Msa0233980:CDS
GGTCCGATCCTTCCTCCACC+TGG 0.491267 2_2:-6440761 Msa0233980:CDS
AGGTGGCTTTCTATGAGAAA+AGG 0.491336 2_2:-6438139 Msa0233980:CDS
AATGCGATTGAAGATTATTG+AGG 0.496048 2_2:-6438177 Msa0233980:CDS
CTTTAGCAGGAGCAGGTGGT+GGG 0.504213 2_2:+6437729 None:intergenic
TTAGCAGGAGCAGGTGGTGG+GGG 0.510264 2_2:+6437731 None:intergenic
GTCGCAGAGGCTTCTTTCTG+GGG 0.515607 2_2:+6437590 None:intergenic
TGCCATTGAGCTAGAGGAGA+AGG 0.516040 2_2:-6438216 Msa0233980:CDS
GGATTCAGTGATCCCAATCC+TGG 0.519749 2_2:-6440878 Msa0233980:CDS
GTTGTCCAAGGCCCTAAGCC+CGG 0.522136 2_2:-6437827 Msa0233980:CDS
CAAGGTTCAAAATAGAGAAA+GGG 0.525223 2_2:-6438096 Msa0233980:CDS
AAGGTTACGCTCTTCGTGAA+TGG 0.527926 2_2:-6440721 Msa0233980:CDS
TCACTGAATCCGTAGATCTC+CGG 0.530021 2_2:+6440890 None:intergenic
ACGAGGCAAAATTATGCAGC+AGG 0.532050 2_2:+6437557 None:intergenic
GTCGTCAGTGAAAGCGTCGA+AGG 0.533146 2_2:+6441045 None:intergenic
TCTACAGTAACCGATTCAAA+CGG 0.534276 2_2:+6440842 None:intergenic
CCTTGGACAACAGTGATTGA+CGG 0.539024 2_2:+6437839 None:intergenic
TCGCATCCTGGAAAGATCTG+TGG 0.539524 2_2:+6437799 None:intergenic
GAAAGAAGCCTCTGCGACCG+AGG 0.541513 2_2:-6437585 Msa0233980:CDS
CGCATCCTGGAAAGATCTGT+GGG 0.542779 2_2:+6437800 None:intergenic
GAACTTATTAAGAGGGAAGC+TGG 0.544539 2_2:-6437202 Msa0233980:three_prime_UTR
GGAGAAGGTGTCGTCTTGAT+CGG 0.546309 2_2:+6440982 None:intergenic
TCAAGAGAAGTTTCACAAAG+AGG 0.547541 2_2:-6437957 Msa0233980:CDS
AATGGAGACTCAGCAACTCA+TGG 0.549948 2_2:+6437178 None:intergenic
GACGTGAAGTTCAGTGCTGT+TGG 0.550763 2_2:+6441154 None:intergenic
TTTAGCAGGAGCAGGTGGTG+GGG 0.553305 2_2:+6437730 None:intergenic
ACGCTCTTCGTGAATGGCGC+CGG 0.553734 2_2:-6440715 Msa0233980:intron
AACGGGAACGATAACGGAAA+CGG 0.554690 2_2:-6440818 Msa0233980:CDS
CCAAAGGATGTGGCCTCTAA+CGG 0.555585 2_2:-6437626 Msa0233980:CDS
CCATCTCACCAGGTGGAGGA+AGG 0.556654 2_2:+6440753 None:intergenic
GACTCCATCTCACCAGGTGG+AGG 0.561037 2_2:+6440749 None:intergenic
CGCCGCTGAAACTACTTCAC+CGG 0.562245 2_2:-6440909 Msa0233980:CDS
GATGCTAAAGACGCAAAGGA+TGG 0.566024 2_2:-6437707 Msa0233980:CDS
TCAAAATAGAGAAAGGGAGA+AGG 0.567942 2_2:-6438090 Msa0233980:intron
GGCAAAATTATGCAGCAGGT+TGG 0.569456 2_2:+6437561 None:intergenic
TCAAAATGCCATTGAGCTAG+AGG 0.570686 2_2:-6438222 Msa0233980:CDS
CCGTCAATCACTGTTGTCCA+AGG 0.577884 2_2:-6437839 Msa0233980:CDS
ACTACTTCACCGGAGATCTA+CGG 0.578559 2_2:-6440899 Msa0233980:CDS
GGTGAGATGGAGTCGGAGGA+AGG 0.580041 2_2:-6440740 Msa0233980:CDS
GGTGGTTACTCCAATTTCGA+CGG 0.586145 2_2:-6440953 Msa0233980:CDS
GCATCTTTAGCAGGAGCAGG+TGG 0.590565 2_2:+6437725 None:intergenic
TTTGGTCGAACTTATTAAGA+GGG 0.591202 2_2:-6437209 Msa0233980:three_prime_UTR
TCAATGTTGGCAACCTCACG+AGG 0.591611 2_2:+6437896 None:intergenic
AGGTTGCCAACATTGAAAAG+AGG 0.596082 2_2:-6437889 Msa0233980:CDS
GGTGTCGTCTTGATCGGAGG+CGG 0.596468 2_2:+6440988 None:intergenic
TCACCAGGTGGAGGAAGGAT+CGG 0.597105 2_2:+6440758 None:intergenic
GCAGTGTTCAATGAATCTCT+TGG 0.598486 2_2:-6437492 Msa0233980:three_prime_UTR
GGCCTCTAACGGCCCAGCAG+AGG 0.599204 2_2:-6437615 Msa0233980:CDS
AGGATCACAACCAAAGGATG+TGG 0.599390 2_2:-6437636 Msa0233980:CDS
TCAGACAAATGATTGAGAGA+AGG 0.599585 2_2:+6437532 None:intergenic
TGCAGAGCTCATTCCTCGTG+AGG 0.599727 2_2:-6437909 Msa0233980:CDS
GCGATTGAAGATTATTGAGG+AGG 0.599831 2_2:-6438174 Msa0233980:CDS
TCGGAGGCGGCGAAGTTGTG+AGG 0.600626 2_2:+6441001 None:intergenic
GTAACCACCGTAACCGGAGA+AGG 0.602987 2_2:+6440967 None:intergenic
TCCTCCGACTCCATCTCACC+AGG 0.604179 2_2:+6440743 None:intergenic
GTAACTGGGTCAGCAGCTGA+AGG 0.610261 2_2:-6437665 Msa0233980:CDS
TGCATCAGGATCACAACCAA+AGG 0.610972 2_2:-6437642 Msa0233980:CDS
TCCACCTGGTGAGATGGAGT+CGG 0.612364 2_2:-6440747 Msa0233980:CDS
ACCTGGTGAGATGGAGTCGG+AGG 0.613781 2_2:-6440744 Msa0233980:CDS
GACACCTTCTCCGGTTACGG+TGG 0.615312 2_2:-6440971 Msa0233980:CDS
TAAAGATGCTAAAGACGCAA+AGG 0.617813 2_2:-6437711 Msa0233980:CDS
TTATGCAGCAGGTTGGTCCT+CGG 0.620437 2_2:+6437568 None:intergenic
GAAGGTGTCGTCTTGATCGG+AGG 0.622038 2_2:+6440985 None:intergenic
CTCCGGTGAAGTAGTTTCAG+CGG 0.641225 2_2:+6440907 None:intergenic
AACGGAGAAGGAGAGTAACC+AGG 0.644232 2_2:+6440860 None:intergenic
TCCGACTCCATCTCACCAGG+TGG 0.644893 2_2:+6440746 None:intergenic
TTCAGCGGCGGAGTGATCGA+CGG 0.648198 2_2:+6440922 None:intergenic
GCCAACATTGAAAAGAGGAG+AGG 0.649076 2_2:-6437884 Msa0233980:CDS
AGGTTGGTCCTCGGTCGCAG+AGG 0.650661 2_2:+6437577 None:intergenic
TTGTGTTATAGACAATGACT+GGG 0.658073 2_2:+6437255 None:intergenic
CGGTGAAGTAGTTTCAGCGG+CGG 0.659180 2_2:+6440910 None:intergenic
AAACATCATCTAAAGTAACT+GGG 0.661612 2_2:-6437679 Msa0233980:CDS
GCTTAATGTTGAGACTAACA+AGG 0.677288 2_2:-6438114 Msa0233980:CDS
GTAACCGATTCAAACGGAGA+AGG 0.683900 2_2:+6440848 None:intergenic
GGAGGCTGAGGAGTATAAGG+TGG 0.692623 2_2:-6438156 Msa0233980:CDS
ATGATTGAGAGAAGGAAACG+AGG 0.694344 2_2:+6437540 None:intergenic
AACGGTTATGGTGATGATGA+CGG 0.705580 2_2:-6440800 Msa0233980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTGATATTTTACTTA+TGG - chr2_2:6438023-6438042 Msa0233980:intron 10.0%
!!! TTTTTAGAAAAAATAGATTT+TGG - chr2_2:6438564-6438583 Msa0233980:intron 10.0%
!!! GTTCAAATTAAACATTTTTT+AGG - chr2_2:6438201-6438220 Msa0233980:CDS 15.0%
!!! ATATTTAAGGTAACATTATT+GGG - chr2_2:6438326-6438345 Msa0233980:intron 15.0%
!!! ATCTATTTTTTCTAAAAACA+AGG + chr2_2:6438562-6438581 None:intergenic 15.0%
!!! GTTTTTATAATAGATAATCA+TGG - chr2_2:6438763-6438782 Msa0233980:intron 15.0%
!!! TGGATTTAACTTAATAATAA+AGG - chr2_2:6439212-6439231 Msa0233980:intron 15.0%
!!! GGATTTAACTTAATAATAAA+GGG - chr2_2:6439213-6439232 Msa0233980:intron 15.0%
!!! AAATTCATTTTTTTAACCAT+AGG + chr2_2:6439445-6439464 None:intergenic 15.0%
!! AAATATTTATATTAATGGCA+AGG - chr2_2:6439552-6439571 Msa0233980:intron 15.0%
!! TATAAATTGAAATTTGTCTA+TGG - chr2_2:6440343-6440362 Msa0233980:intron 15.0%
!! AGTAATTAGGATTATGAATT+AGG - chr2_2:6437756-6437775 Msa0233980:CDS 20.0%
!! AATTAGTAAAATTCTATGCT+AGG - chr2_2:6437924-6437943 Msa0233980:CDS 20.0%
!! ATTAGTAAAATTCTATGCTA+GGG - chr2_2:6437925-6437944 Msa0233980:CDS 20.0%
!! TTGAATTTGTAATATGAAAG+AGG - chr2_2:6438000-6438019 Msa0233980:intron 20.0%
!!! TGATATTTTACTTATGGTAA+TGG - chr2_2:6438029-6438048 Msa0233980:intron 20.0%
!!! TAATTTGTATGTTAACCAAA+GGG - chr2_2:6438257-6438276 Msa0233980:intron 20.0%
!!! CATATTTAAGGTAACATTAT+TGG - chr2_2:6438325-6438344 Msa0233980:intron 20.0%
!!! AGTAATAACTTTTCATTTTG+AGG - chr2_2:6438597-6438616 Msa0233980:intron 20.0%
!! CACTATTAGAATAATAAAAG+TGG - chr2_2:6438669-6438688 Msa0233980:intron 20.0%
!!! GAATAATAAAAGTGGTTTTT+TGG - chr2_2:6438677-6438696 Msa0233980:intron 20.0%
!!! AAAAAAGCATTGATCTTATA+TGG - chr2_2:6439289-6439308 Msa0233980:intron 20.0%
!! AAAATTGACTAGAAATAGTA+GGG + chr2_2:6439356-6439375 None:intergenic 20.0%
!! TACATAAAAAATTGATCACA+CGG + chr2_2:6439488-6439507 None:intergenic 20.0%
!! CAAGTAACAATACAAAAATT+AGG - chr2_2:6439512-6439531 Msa0233980:intron 20.0%
!!! GAAACATTTATGTATTTTGT+TGG - chr2_2:6439589-6439608 Msa0233980:intron 20.0%
!!! CTATTATTTTAGGTTGTAAT+AGG + chr2_2:6439680-6439699 None:intergenic 20.0%
!! CTATTACAACCTAAAATAAT+AGG - chr2_2:6439678-6439697 Msa0233980:intron 20.0%
!! TAACAGGAATTTATAACAAT+AGG + chr2_2:6439743-6439762 None:intergenic 20.0%
!! TATAAATTCCTGTTACAATA+AGG - chr2_2:6439748-6439767 Msa0233980:intron 20.0%
!! ATAAATTCCTGTTACAATAA+GGG - chr2_2:6439749-6439768 Msa0233980:intron 20.0%
!! ATCCATTATGTGTTTATTAT+GGG - chr2_2:6439780-6439799 Msa0233980:intron 20.0%
!!! ATTACCAGCATTAAATTTTT+AGG + chr2_2:6439935-6439954 None:intergenic 20.0%
!!! TTTTAGTCCAATAAAGATTT+AGG - chr2_2:6440031-6440050 Msa0233980:intron 20.0%
!! AAAAAGATAAATCAAAATGC+TGG + chr2_2:6440287-6440306 None:intergenic 20.0%
! AATGAAATGAAATGTGCTAA+TGG + chr2_2:6437223-6437242 None:intergenic 25.0%
! AACTTCATAATCGAATTTCT+AGG + chr2_2:6437720-6437739 None:intergenic 25.0%
!!! TTCGATTATGAAGTTTTTTG+CGG - chr2_2:6437725-6437744 Msa0233980:CDS 25.0%
!!! AGGAATTGATTTGTATATAC+TGG - chr2_2:6437948-6437967 Msa0233980:CDS 25.0%
! TGTTACATGTAGAAAAATCT+CGG - chr2_2:6438179-6438198 Msa0233980:CDS 25.0%
!! GTAATTTGTATGTTAACCAA+AGG - chr2_2:6438256-6438275 Msa0233980:intron 25.0%
! TCTAGCAATTTACAAAAAAC+TGG - chr2_2:6438382-6438401 Msa0233980:intron 25.0%
! CTAGCAATTTACAAAAAACT+GGG - chr2_2:6438383-6438402 Msa0233980:intron 25.0%
! ATTTAAGAAATGTGTTCAAG+AGG + chr2_2:6438442-6438461 None:intergenic 25.0%
! TATCTATTATAAAAACCCAC+TGG + chr2_2:6438759-6438778 None:intergenic 25.0%
!! ATTTAGGGAAAGTATAAACA+TGG + chr2_2:6439007-6439026 None:intergenic 25.0%
!! TAAAACAGACAAGGTATTTA+GGG + chr2_2:6439022-6439041 None:intergenic 25.0%
!! TCTGTTTTACATTGAGATAA+AGG - chr2_2:6439033-6439052 Msa0233980:intron 25.0%
!! CTGTTTTACATTGAGATAAA+GGG - chr2_2:6439034-6439053 Msa0233980:intron 25.0%
!!! CTTAATAATAAAGGGTGTTT+CGG - chr2_2:6439221-6439240 Msa0233980:intron 25.0%
! GAAAATTGACTAGAAATAGT+AGG + chr2_2:6439357-6439376 None:intergenic 25.0%
!!! GTGTGATCAATTTTTTATGT+AGG - chr2_2:6439487-6439506 Msa0233980:intron 25.0%
!! GAACTCTAAACATTTTATCT+AGG + chr2_2:6439617-6439636 None:intergenic 25.0%
! GATCCATTATGTGTTTATTA+TGG - chr2_2:6439779-6439798 Msa0233980:intron 25.0%
! AATTATCTTGTATTTGCAAG+AGG - chr2_2:6439804-6439823 Msa0233980:intron 25.0%
! AATAGCTCCTAAATCTTTAT+TGG + chr2_2:6440041-6440060 None:intergenic 25.0%
!! AAACATCATCTAAAGTAACT+GGG - chr2_2:6440663-6440682 Msa0233980:intron 25.0%
! TATTAGTTCCTAATGCTTAT+TGG - chr2_2:6440879-6440898 Msa0233980:CDS 25.0%
! TTCATTAAAACCTTTAATGC+AGG + chr2_2:6440918-6440937 None:intergenic 25.0%
! TGTTTCTCTCTCTAGAAATT+CGG + chr2_2:6437260-6437279 None:intergenic 30.0%
TCCAACAAAATTCAACTTAC+CGG + chr2_2:6437649-6437668 None:intergenic 30.0%
! TGCGGTTTTTGTAAGTAATT+AGG - chr2_2:6437743-6437762 Msa0233980:CDS 30.0%
!! TTACTTATGGTAATGGAAGT+TGG - chr2_2:6438036-6438055 Msa0233980:intron 30.0%
TTGCACTTAGATTTCAATCT+TGG - chr2_2:6438119-6438138 Msa0233980:CDS 30.0%
! AAGGTAACATTATTGGGTTT+TGG - chr2_2:6438332-6438351 Msa0233980:intron 30.0%
GGTCATAATAAATCTTGATG+AGG - chr2_2:6438404-6438423 Msa0233980:intron 30.0%
TAAATTACATCAGAGGAAGA+GGG + chr2_2:6438828-6438847 None:intergenic 30.0%
ATTTACAGAGCGATAGATAT+TGG - chr2_2:6438843-6438862 Msa0233980:intron 30.0%
TGTTACTAGATGTTATAAGC+AGG - chr2_2:6438950-6438969 Msa0233980:intron 30.0%
! GAAAGTATAAACATGGATAG+GGG + chr2_2:6439000-6439019 None:intergenic 30.0%
! GGAAAGTATAAACATGGATA+GGG + chr2_2:6439001-6439020 None:intergenic 30.0%
! GTAAAACAGACAAGGTATTT+AGG + chr2_2:6439023-6439042 None:intergenic 30.0%
ATCTCAATGTAAAACAGACA+AGG + chr2_2:6439031-6439050 None:intergenic 30.0%
CATAAAGATCGTGTTGAAAA+AGG + chr2_2:6439105-6439124 None:intergenic 30.0%
!!! CTTTTTCAACACGATCTTTA+TGG - chr2_2:6439103-6439122 Msa0233980:intron 30.0%
ATAGTTTAATGAGACTTGCA+TGG - chr2_2:6439192-6439211 Msa0233980:intron 30.0%
AATAGTGTGTTGAAGATTGT+TGG - chr2_2:6439244-6439263 Msa0233980:intron 30.0%
!! TCGCATTGACCTATTATTTT+AGG + chr2_2:6439690-6439709 None:intergenic 30.0%
TGCCCATAATAAACACATAA+TGG + chr2_2:6439785-6439804 None:intergenic 30.0%
TTTGAACCAGTGATTTCATT+CGG - chr2_2:6439839-6439858 Msa0233980:intron 30.0%
TGAGCCTAAAAATTTAATGC+TGG - chr2_2:6439928-6439947 Msa0233980:intron 30.0%
CCTCTAATAACTTTACAAAC+AGG + chr2_2:6439966-6439985 None:intergenic 30.0%
CCTGTTTGTAAAGTTATTAG+AGG - chr2_2:6439963-6439982 Msa0233980:intron 30.0%
AATGCGATTGAAGATTATTG+AGG - chr2_2:6440165-6440184 Msa0233980:intron 30.0%
ACAAGGTTCAAAATAGAGAA+AGG - chr2_2:6440245-6440264 Msa0233980:intron 30.0%
CAAGGTTCAAAATAGAGAAA+GGG - chr2_2:6440246-6440265 Msa0233980:intron 30.0%
! GAAACATCATCTAAAGTAAC+TGG - chr2_2:6440662-6440681 Msa0233980:intron 30.0%
TGACACTTGGAAAATATATC+AGG + chr2_2:6441042-6441061 None:intergenic 30.0%
CCAATAGAAAAATTGACACT+TGG + chr2_2:6441055-6441074 None:intergenic 30.0%
! CCAAGTGTCAATTTTTCTAT+TGG - chr2_2:6441052-6441071 Msa0233980:CDS 30.0%
TTGTGTTATAGACAATGACT+GGG + chr2_2:6441090-6441109 None:intergenic 30.0%
! TTTTGGTCGAACTTATTAAG+AGG - chr2_2:6441132-6441151 Msa0233980:five_prime_UTR 30.0%
TTTGGTCGAACTTATTAAGA+GGG - chr2_2:6441133-6441152 Msa0233980:five_prime_UTR 30.0%
!! AATGTGCTAATGGCTTTGTT+TGG + chr2_2:6437213-6437232 None:intergenic 35.0%
! TCTACAGTAACCGATTCAAA+CGG + chr2_2:6437503-6437522 None:intergenic 35.0%
GAATCGGTTACTGTAGAAAA+CGG - chr2_2:6437506-6437525 Msa0233980:three_prime_UTR 35.0%
AATCGGTTACTGTAGAAAAC+GGG - chr2_2:6437507-6437526 Msa0233980:three_prime_UTR 35.0%
! TGCTATTGCGATTTTACTTG+TGG - chr2_2:6437854-6437873 Msa0233980:CDS 35.0%
AGTAAAATTCTATGCTAGGG+AGG - chr2_2:6437928-6437947 Msa0233980:CDS 35.0%
!! ACTGGTATCAAGAGTATCTT+TGG - chr2_2:6437966-6437985 Msa0233980:CDS 35.0%
!! CTGGTATCAAGAGTATCTTT+GGG - chr2_2:6437967-6437986 Msa0233980:CDS 35.0%
ATTCGTTAGGGTAAATTCCA+TGG - chr2_2:6438073-6438092 Msa0233980:intron 35.0%
CTACATGTAACAATCGAACT+CGG + chr2_2:6438171-6438190 None:intergenic 35.0%
GGATTGGATGGTCATATTTA+AGG - chr2_2:6438313-6438332 Msa0233980:intron 35.0%
!! TTCCGAGTTCTCTAAGATTT+AGG - chr2_2:6438498-6438517 Msa0233980:intron 35.0%
!! TCCGAGTTCTCTAAGATTTA+GGG - chr2_2:6438499-6438518 Msa0233980:intron 35.0%
ACCCTAAATCTTAGAGAACT+CGG + chr2_2:6438503-6438522 None:intergenic 35.0%
! GACTAAGGGTTCATTTGTTT+TGG + chr2_2:6438737-6438756 None:intergenic 35.0%
ATAAAAACCCACTGGACTAA+GGG + chr2_2:6438751-6438770 None:intergenic 35.0%
TATAAAAACCCACTGGACTA+AGG + chr2_2:6438752-6438771 None:intergenic 35.0%
GTAAATTACATCAGAGGAAG+AGG + chr2_2:6438829-6438848 None:intergenic 35.0%
CGATAGATATTGGACAAATC+TGG - chr2_2:6438853-6438872 Msa0233980:intron 35.0%
ATGTTATAAGCAGGTCTTCA+TGG - chr2_2:6438959-6438978 Msa0233980:intron 35.0%
! GGGAAAGTATAAACATGGAT+AGG + chr2_2:6439002-6439021 None:intergenic 35.0%
CTCACTGTATAAATCGTGAA+GGG + chr2_2:6439065-6439084 None:intergenic 35.0%
TCTCACTGTATAAATCGTGA+AGG + chr2_2:6439066-6439085 None:intergenic 35.0%
TCAACACGATCTTTATGGTT+AGG - chr2_2:6439108-6439127 Msa0233980:intron 35.0%
CAACACGATCTTTATGGTTA+GGG - chr2_2:6439109-6439128 Msa0233980:intron 35.0%
AACACGATCTTTATGGTTAG+GGG - chr2_2:6439110-6439129 Msa0233980:intron 35.0%
ATCAAACAGATGAGCAATCA+TGG + chr2_2:6439379-6439398 None:intergenic 35.0%
AGTCATAGCATAGTTAACGT+AGG - chr2_2:6439713-6439732 Msa0233980:intron 35.0%
GTCATAGCATAGTTAACGTA+GGG - chr2_2:6439714-6439733 Msa0233980:intron 35.0%
CATGACACAATGAATGTCTT+TGG - chr2_2:6440083-6440102 Msa0233980:intron 35.0%
!!! AATGGCATTTTGACTGTACA+AGG + chr2_2:6440113-6440132 None:intergenic 35.0%
GCTTAATGTTGAGACTAACA+AGG - chr2_2:6440228-6440247 Msa0233980:intron 35.0%
TCAAAATAGAGAAAGGGAGA+AGG - chr2_2:6440252-6440271 Msa0233980:intron 35.0%
TCAAGAGAAGTTTCACAAAG+AGG - chr2_2:6440385-6440404 Msa0233980:intron 35.0%
TAAAGATGCTAAAGACGCAA+AGG - chr2_2:6440631-6440650 Msa0233980:intron 35.0%
TCAGACAAATGATTGAGAGA+AGG + chr2_2:6440813-6440832 None:intergenic 35.0%
CAATGCAACCAATAAGCATT+AGG + chr2_2:6440890-6440909 None:intergenic 35.0%
CATTGTAGTACCTGCATTAA+AGG - chr2_2:6440905-6440924 Msa0233980:CDS 35.0%
ACATGTAGATTCAGTGTTCA+TGG - chr2_2:6440962-6440981 Msa0233980:CDS 35.0%
!!! TCATGAGATTGCTGACTTTT+TGG - chr2_2:6441014-6441033 Msa0233980:CDS 35.0%
!!! CATGAGATTGCTGACTTTTT+GGG - chr2_2:6441015-6441034 Msa0233980:CDS 35.0%
CTTGTGTTATAGACAATGAC+TGG + chr2_2:6441091-6441110 None:intergenic 35.0%
CACAAGTAATCGACCTTTAT+AGG - chr2_2:6441105-6441124 Msa0233980:five_prime_UTR 35.0%
GTAGAAAACGGGAACGATAA+CGG - chr2_2:6437518-6437537 Msa0233980:three_prime_UTR 40.0%
!! AACGATAACGGAAACGGTTA+TGG - chr2_2:6437530-6437549 Msa0233980:three_prime_UTR 40.0%
! AACGGTTATGGTGATGATGA+CGG - chr2_2:6437542-6437561 Msa0233980:three_prime_UTR 40.0%
!!! GACGGTGTTTTTGTTTCTGA+TGG - chr2_2:6437560-6437579 Msa0233980:exon 40.0%
!! GCCGGTAAGTTGAATTTTGT+TGG - chr2_2:6437645-6437664 Msa0233980:CDS 40.0%
!! GTATCAAGAGTATCTTTGGG+TGG - chr2_2:6437970-6437989 Msa0233980:CDS 40.0%
! CCATAATCTTTTCTGTGCCA+TGG + chr2_2:6438093-6438112 None:intergenic 40.0%
CCATGGCACAGAAAAGATTA+TGG - chr2_2:6438090-6438109 Msa0233980:intron 40.0%
TGGCACAGAAAAGATTATGG+TGG - chr2_2:6438093-6438112 Msa0233980:CDS 40.0%
GCGTGTACTGTTCACTTTAT+TGG - chr2_2:6438230-6438249 Msa0233980:intron 40.0%
CAATCCAGCTTCAAATAGCA+AGG + chr2_2:6438299-6438318 None:intergenic 40.0%
!! CTTGCTATTTGAAGCTGGAT+TGG - chr2_2:6438297-6438316 Msa0233980:intron 40.0%
! CTATTTGAAGCTGGATTGGA+TGG - chr2_2:6438301-6438320 Msa0233980:intron 40.0%
AGACAGATCCAAGTTCAACA+GGG + chr2_2:6438365-6438384 None:intergenic 40.0%
TAGACAGATCCAAGTTCAAC+AGG + chr2_2:6438366-6438385 None:intergenic 40.0%
AAATGAACCCTTAGTCCAGT+GGG - chr2_2:6438741-6438760 Msa0233980:intron 40.0%
CGCTCTGTAAATTACATCAG+AGG + chr2_2:6438835-6438854 None:intergenic 40.0%
GATAGGGGAGGAATATGTTA+GGG + chr2_2:6438985-6439004 None:intergenic 40.0%
AGTATAAACATGGATAGGGG+AGG + chr2_2:6438997-6439016 None:intergenic 40.0%
TTCTTGAGTTTCCCTGGATA+AGG - chr2_2:6439136-6439155 Msa0233980:intron 40.0%
!! GGTAAAGTGTTGTGACTGTA+AGG + chr2_2:6439335-6439354 None:intergenic 40.0%
TTAACCATAGGACAGTTGCT+CGG + chr2_2:6439433-6439452 None:intergenic 40.0%
TGGCAAGGTTCATGCTTATT+AGG - chr2_2:6439567-6439586 Msa0233980:intron 40.0%
! CTGTTACAATAAGGGAGCAT+GGG - chr2_2:6439757-6439776 Msa0233980:intron 40.0%
ACTAGTGTGAAGAGAAGCTT+TGG + chr2_2:6439885-6439904 None:intergenic 40.0%
!!! GCATTTTGACTGTACAAGGA+AGG + chr2_2:6440109-6440128 None:intergenic 40.0%
TCAAAATGCCATTGAGCTAG+AGG - chr2_2:6440120-6440139 Msa0233980:intron 40.0%
GCGATTGAAGATTATTGAGG+AGG - chr2_2:6440168-6440187 Msa0233980:intron 40.0%
AGGTGGCTTTCTATGAGAAA+AGG - chr2_2:6440203-6440222 Msa0233980:intron 40.0%
AATAGAGAAAGGGAGAAGGT+AGG - chr2_2:6440256-6440275 Msa0233980:intron 40.0%
AAGAGGCAGACAAAGCTTAT+TGG - chr2_2:6440402-6440421 Msa0233980:intron 40.0%
AGGTTGCCAACATTGAAAAG+AGG - chr2_2:6440453-6440472 Msa0233980:intron 40.0%
ATGATTGAGAGAAGGAAACG+AGG + chr2_2:6440805-6440824 None:intergenic 40.0%
GAACACTGCATGTGCAAAAA+GGG + chr2_2:6440839-6440858 None:intergenic 40.0%
TGAACACTGCATGTGCAAAA+AGG + chr2_2:6440840-6440859 None:intergenic 40.0%
GCAGTGTTCAATGAATCTCT+TGG - chr2_2:6440850-6440869 Msa0233980:CDS 40.0%
! CGACCTTTATAGGCATGTTT+TGG - chr2_2:6441115-6441134 Msa0233980:five_prime_UTR 40.0%
CGACCAAAACATGCCTATAA+AGG + chr2_2:6441121-6441140 None:intergenic 40.0%
GAACTTATTAAGAGGGAAGC+TGG - chr2_2:6441140-6441159 Msa0233980:five_prime_UTR 40.0%
ATTGGAGTAACCACCGTAAC+CGG + chr2_2:6437384-6437403 None:intergenic 45.0%
GGTGGTTACTCCAATTTCGA+CGG - chr2_2:6437389-6437408 Msa0233980:three_prime_UTR 45.0%
ACTACTTCACCGGAGATCTA+CGG - chr2_2:6437443-6437462 Msa0233980:three_prime_UTR 45.0%
TCACTGAATCCGTAGATCTC+CGG + chr2_2:6437455-6437474 None:intergenic 45.0%
GAAGGAGAGTAACCAGGATT+GGG + chr2_2:6437479-6437498 None:intergenic 45.0%
AGAAGGAGAGTAACCAGGAT+TGG + chr2_2:6437480-6437499 None:intergenic 45.0%
CTCTCCTTCTCCGTTTGAAT+CGG - chr2_2:6437490-6437509 Msa0233980:three_prime_UTR 45.0%
! GTAACCGATTCAAACGGAGA+AGG + chr2_2:6437497-6437516 None:intergenic 45.0%
!! AACGGGAACGATAACGGAAA+CGG - chr2_2:6437524-6437543 Msa0233980:three_prime_UTR 45.0%
AAGGTTACGCTCTTCGTGAA+TGG - chr2_2:6437621-6437640 Msa0233980:CDS 45.0%
!! GGTAATGGAAGTTGGATCTG+CGG - chr2_2:6438044-6438063 Msa0233980:intron 45.0%
ACAATCGAACTCGGTATCCT+GGG + chr2_2:6438162-6438181 None:intergenic 45.0%
AACAATCGAACTCGGTATCC+TGG + chr2_2:6438163-6438182 None:intergenic 45.0%
GTCACGTAATGACTACCCTT+TGG + chr2_2:6438275-6438294 None:intergenic 45.0%
GATATCTCCCCTGTTGAACT+TGG - chr2_2:6438354-6438373 Msa0233980:intron 45.0%
GACAGATCCAAGTTCAACAG+GGG + chr2_2:6438364-6438383 None:intergenic 45.0%
CAAATGAACCCTTAGTCCAG+TGG - chr2_2:6438740-6438759 Msa0233980:intron 45.0%
GGATAGGGGAGGAATATGTT+AGG + chr2_2:6438986-6439005 None:intergenic 45.0%
GGGAAATTCTTGAGTTTCCC+TGG - chr2_2:6439130-6439149 Msa0233980:intron 45.0%
AGTTTCCCTGGATAAGGAGT+AGG - chr2_2:6439142-6439161 Msa0233980:intron 45.0%
GTTTCCCTGGATAAGGAGTA+GGG - chr2_2:6439143-6439162 Msa0233980:intron 45.0%
CCATGCTCCCTTATTGTAAC+AGG + chr2_2:6439759-6439778 None:intergenic 45.0%
CCTGTTACAATAAGGGAGCA+TGG - chr2_2:6439756-6439775 Msa0233980:intron 45.0%
TTGCTGCCGAATGAAATCAC+TGG + chr2_2:6439848-6439867 None:intergenic 45.0%
!! GAAGAGAAGCTTTGGAGCAA+TGG + chr2_2:6439877-6439896 None:intergenic 45.0%
AGCTAGAGGAGAAGGAGAAA+AGG - chr2_2:6440134-6440153 Msa0233980:intron 45.0%
GCTAGAGGAGAAGGAGAAAA+GGG - chr2_2:6440135-6440154 Msa0233980:intron 45.0%
GAAGATTATTGAGGAGGCTG+AGG - chr2_2:6440174-6440193 Msa0233980:intron 45.0%
GCCAACATTGAAAAGAGGAG+AGG - chr2_2:6440458-6440477 Msa0233980:intron 45.0%
! GCCTCTCCTCTTTTCAATGT+TGG + chr2_2:6440462-6440481 None:intergenic 45.0%
GAGGAGAGGCAAAAAAGATC+AGG - chr2_2:6440472-6440491 Msa0233980:intron 45.0%
CCTTGGACAACAGTGATTGA+CGG + chr2_2:6440506-6440525 None:intergenic 45.0%
TAGCAGTATTTGTCGCATCC+TGG + chr2_2:6440558-6440577 None:intergenic 45.0%
TTAGCATCTTTAGCAGGAGC+AGG + chr2_2:6440623-6440642 None:intergenic 45.0%
GCGTCTTTAGCATCTTTAGC+AGG + chr2_2:6440629-6440648 None:intergenic 45.0%
GATGCTAAAGACGCAAAGGA+TGG - chr2_2:6440635-6440654 Msa0233980:intron 45.0%
TGCATCAGGATCACAACCAA+AGG - chr2_2:6440700-6440719 Msa0233980:intron 45.0%
AGGATCACAACCAAAGGATG+TGG - chr2_2:6440706-6440725 Msa0233980:intron 45.0%
GGCAAAATTATGCAGCAGGT+TGG + chr2_2:6440784-6440803 None:intergenic 45.0%
ACGAGGCAAAATTATGCAGC+AGG + chr2_2:6440788-6440807 None:intergenic 45.0%
!! ATATGAAATATTTATATTAA+TGG - chr2_2:6439547-6439566 Msa0233980:intron 5.0%
GACGTGAAGTTCAGTGCTGT+TGG + chr2_2:6437191-6437210 None:intergenic 50.0%
!! GGAGAAGGTGTCGTCTTGAT+CGG + chr2_2:6437363-6437382 None:intergenic 50.0%
GATCAAGACGACACCTTCTC+CGG - chr2_2:6437362-6437381 Msa0233980:three_prime_UTR 50.0%
CTCCGGTGAAGTAGTTTCAG+CGG + chr2_2:6437438-6437457 None:intergenic 50.0%
GGATTCAGTGATCCCAATCC+TGG - chr2_2:6437464-6437483 Msa0233980:three_prime_UTR 50.0%
AACGGAGAAGGAGAGTAACC+AGG + chr2_2:6437485-6437504 None:intergenic 50.0%
! TCTGCGGTGAGGTATTCGTT+AGG - chr2_2:6438060-6438079 Msa0233980:intron 50.0%
! CTGCGGTGAGGTATTCGTTA+GGG - chr2_2:6438061-6438080 Msa0233980:intron 50.0%
CAATCGAACTCGGTATCCTG+GGG + chr2_2:6438161-6438180 None:intergenic 50.0%
!! GACGCCTTGCTATTTGAAGC+TGG - chr2_2:6438292-6438311 Msa0233980:intron 50.0%
TCGACCCTACTCCTTATCCA+GGG + chr2_2:6439150-6439169 None:intergenic 50.0%
ATCGACCCTACTCCTTATCC+AGG + chr2_2:6439151-6439170 None:intergenic 50.0%
TGCCATTGAGCTAGAGGAGA+AGG - chr2_2:6440126-6440145 Msa0233980:intron 50.0%
! CTCCTTCTCCTCTAGCTCAA+TGG + chr2_2:6440131-6440150 None:intergenic 50.0%
! TGAGGAGGCTGAGGAGTATA+AGG - chr2_2:6440183-6440202 Msa0233980:intron 50.0%
TCAATGTTGGCAACCTCACG+AGG + chr2_2:6440449-6440468 None:intergenic 50.0%
CCGTCAATCACTGTTGTCCA+AGG - chr2_2:6440503-6440522 Msa0233980:intron 50.0%
GAAAGATCTGTGGGTTTGCC+GGG + chr2_2:6440536-6440555 None:intergenic 50.0%
GGAAAGATCTGTGGGTTTGC+CGG + chr2_2:6440537-6440556 None:intergenic 50.0%
GCAAACCCACAGATCTTTCC+AGG - chr2_2:6440537-6440556 Msa0233980:intron 50.0%
CGCATCCTGGAAAGATCTGT+GGG + chr2_2:6440545-6440564 None:intergenic 50.0%
TCGCATCCTGGAAAGATCTG+TGG + chr2_2:6440546-6440565 None:intergenic 50.0%
CCAAAGGATGTGGCCTCTAA+CGG - chr2_2:6440716-6440735 Msa0233980:CDS 50.0%
!! TTATGCAGCAGGTTGGTCCT+CGG + chr2_2:6440777-6440796 None:intergenic 50.0%
!! GTCGTCAGTGAAAGCGTCGA+AGG + chr2_2:6437300-6437319 None:intergenic 55.0%
!! GAAGGTGTCGTCTTGATCGG+AGG + chr2_2:6437360-6437379 None:intergenic 55.0%
GACGACACCTTCTCCGGTTA+CGG - chr2_2:6437368-6437387 Msa0233980:three_prime_UTR 55.0%
GTAACCACCGTAACCGGAGA+AGG + chr2_2:6437378-6437397 None:intergenic 55.0%
GGTGACATCGCCGTCGAAAT+TGG + chr2_2:6437402-6437421 None:intergenic 55.0%
CGGTGAAGTAGTTTCAGCGG+CGG + chr2_2:6437435-6437454 None:intergenic 55.0%
CGCCGCTGAAACTACTTCAC+CGG - chr2_2:6437433-6437452 Msa0233980:three_prime_UTR 55.0%
TCACCAGGTGGAGGAAGGAT+CGG + chr2_2:6437587-6437606 None:intergenic 55.0%
TCCACCTGGTGAGATGGAGT+CGG - chr2_2:6437595-6437614 Msa0233980:CDS 55.0%
TGGAAGTTGGATCTGCGGTG+AGG - chr2_2:6438049-6438068 Msa0233980:intron 55.0%
TTGCGCGTGTTATACACCCC+AGG - chr2_2:6438142-6438161 Msa0233980:CDS 55.0%
GGAGTAGGGTCGATCAACTG+AGG - chr2_2:6439157-6439176 Msa0233980:intron 55.0%
! GGAGGCTGAGGAGTATAAGG+TGG - chr2_2:6440186-6440205 Msa0233980:intron 55.0%
TGCAGAGCTCATTCCTCGTG+AGG - chr2_2:6440433-6440452 Msa0233980:intron 55.0%
TTTAGCAGGAGCAGGTGGTG+GGG + chr2_2:6440615-6440634 None:intergenic 55.0%
CTTTAGCAGGAGCAGGTGGT+GGG + chr2_2:6440616-6440635 None:intergenic 55.0%
TCTTTAGCAGGAGCAGGTGG+TGG + chr2_2:6440617-6440636 None:intergenic 55.0%
GCATCTTTAGCAGGAGCAGG+TGG + chr2_2:6440620-6440639 None:intergenic 55.0%
GTAACTGGGTCAGCAGCTGA+AGG - chr2_2:6440677-6440696 Msa0233980:intron 55.0%
! TCAGCAGCTGAAGGTGCATC+AGG - chr2_2:6440686-6440705 Msa0233980:intron 55.0%
CCGTTAGAGGCCACATCCTT+TGG + chr2_2:6440719-6440738 None:intergenic 55.0%
!! CTTTCTGGGGTTCCTCTGCT+GGG + chr2_2:6440742-6440761 None:intergenic 55.0%
!! TCTTTCTGGGGTTCCTCTGC+TGG + chr2_2:6440743-6440762 None:intergenic 55.0%
GTCGCAGAGGCTTCTTTCTG+GGG + chr2_2:6440755-6440774 None:intergenic 55.0%
GGTCGCAGAGGCTTCTTTCT+GGG + chr2_2:6440756-6440775 None:intergenic 55.0%
! GGTGTCGTCTTGATCGGAGG+CGG + chr2_2:6437357-6437376 None:intergenic 60.0%
GACACCTTCTCCGGTTACGG+TGG - chr2_2:6437371-6437390 Msa0233980:three_prime_UTR 60.0%
TTCAGCGGCGGAGTGATCGA+CGG + chr2_2:6437423-6437442 None:intergenic 60.0%
CCATCTCACCAGGTGGAGGA+AGG + chr2_2:6437592-6437611 None:intergenic 60.0%
CCTTCCTCCACCTGGTGAGA+TGG - chr2_2:6437589-6437608 Msa0233980:CDS 60.0%
GACTCCATCTCACCAGGTGG+AGG + chr2_2:6437596-6437615 None:intergenic 60.0%
TCCGACTCCATCTCACCAGG+TGG + chr2_2:6437599-6437618 None:intergenic 60.0%
ACCTGGTGAGATGGAGTCGG+AGG - chr2_2:6437598-6437617 Msa0233980:CDS 60.0%
TCCTCCGACTCCATCTCACC+AGG + chr2_2:6437602-6437621 None:intergenic 60.0%
GGTGAGATGGAGTCGGAGGA+AGG - chr2_2:6437602-6437621 Msa0233980:CDS 60.0%
ACGCTCTTCGTGAATGGCGC+CGG - chr2_2:6437627-6437646 Msa0233980:CDS 60.0%
CACGCCGAGCAACTGTCCTA+TGG - chr2_2:6439426-6439445 Msa0233980:intron 60.0%
GTTGTCCAAGGCCCTAAGCC+CGG - chr2_2:6440515-6440534 Msa0233980:intron 60.0%
CTGTGGGTTTGCCGGGCTTA+GGG + chr2_2:6440529-6440548 None:intergenic 60.0%
TCTGTGGGTTTGCCGGGCTT+AGG + chr2_2:6440530-6440549 None:intergenic 60.0%
GGGGGAATCATGTGAGGTGG+TGG + chr2_2:6440596-6440615 None:intergenic 60.0%
GGTGGGGGAATCATGTGAGG+TGG + chr2_2:6440599-6440618 None:intergenic 60.0%
!! GGTGGTGGGGGAATCATGTG+AGG + chr2_2:6440602-6440621 None:intergenic 60.0%
! TTAGCAGGAGCAGGTGGTGG+GGG + chr2_2:6440614-6440633 None:intergenic 60.0%
TTCCTCTGCTGGGCCGTTAG+AGG + chr2_2:6440732-6440751 None:intergenic 60.0%
CGGTCGCAGAGGCTTCTTTC+TGG + chr2_2:6440757-6440776 None:intergenic 60.0%
GAAAGAAGCCTCTGCGACCG+AGG - chr2_2:6440757-6440776 Msa0233980:CDS 60.0%
TCGGAGGCGGCGAAGTTGTG+AGG + chr2_2:6437344-6437363 None:intergenic 65.0%
GGTCCGATCCTTCCTCCACC+TGG - chr2_2:6437581-6437600 Msa0233980:CDS 65.0%
GTTTGCCGGGCTTAGGGCCT+TGG + chr2_2:6440523-6440542 None:intergenic 65.0%
! AGGTTGGTCCTCGGTCGCAG+AGG + chr2_2:6440768-6440787 None:intergenic 65.0%
GGCCTCTAACGGCCCAGCAG+AGG - chr2_2:6440727-6440746 Msa0233980:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 6437181 6441183 6437181 ID=Msa0233980;Name=Msa0233980
chr2_2 mRNA 6437181 6441183 6437181 ID=Msa0233980-mRNA-1;Parent=Msa0233980;Name=Msa0233980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=106|1|1|1|1|1|3|387|313
chr2_2 exon 6437181 6437993 6437181 ID=Msa0233980-mRNA-1:exon:2852;Parent=Msa0233980-mRNA-1
chr2_2 exon 6438091 6438244 6438091 ID=Msa0233980-mRNA-1:exon:2851;Parent=Msa0233980-mRNA-1
chr2_2 exon 6440716 6441183 6440716 ID=Msa0233980-mRNA-1:exon:2850;Parent=Msa0233980-mRNA-1
chr2_2 five_prime_UTR 6441078 6441183 6441078 ID=Msa0233980-mRNA-1:five_prime_utr;Parent=Msa0233980-mRNA-1
chr2_2 CDS 6440716 6441077 6440716 ID=Msa0233980-mRNA-1:cds;Parent=Msa0233980-mRNA-1
chr2_2 CDS 6438091 6438244 6438091 ID=Msa0233980-mRNA-1:cds;Parent=Msa0233980-mRNA-1
chr2_2 CDS 6437568 6437993 6437568 ID=Msa0233980-mRNA-1:cds;Parent=Msa0233980-mRNA-1
chr2_2 three_prime_UTR 6437181 6437567 6437181 ID=Msa0233980-mRNA-1:three_prime_utr;Parent=Msa0233980-mRNA-1
Gene Sequence

>Msa0233980

ATGTCTTCTTCCTTCGACGCTTTCACTGACGACTTGAACGTCAACTCATCTTCTCCTCACAACTTCGCCGCCTCCGATCAAGACGACACCTTCTCCGGTTACGGTGGTTACTCCAATTTCGACGGCGATGTCACCGTCGATCACTCCGCCGCTGAAACTACTTCACCGGAGATCTACGGATTCAGTGATCCCAATCCTGGTTACTCTCCTTCTCCGTTTGAATCGGTTACTGTAGAAAACGGGAACGATAACGGAAACGGTTATGGTGATGATGACGGTGTTTTTGTTTCTGATGGTCCGATCCTTCCTCCACCTGGTGAGATGGAGTCGGAGGAAGGTTACGCTCTTCGTGAATGGCGCCGTCAAAATGCCATTGAGCTAGAGGAGAAGGAGAAAAGGGAAAAAGAAATGCGATTGAAGATTATTGAGGAGGCTGAGGAGTATAAGGTGGCTTTCTATGAGAAAAGGAAGCTTAATGTTGAGACTAACAAGGTTCAAAATAGAGAAAGGGAGAAGTTATTCGTAGCTAATCAAGAGAAGTTTCACAAAGAGGCAGACAAAGCTTATTGGAAGACAATTGCAGAGCTCATTCCTCGTGAGGTTGCCAACATTGAAAAGAGGAGAGGCAAAAAAGATCAGGATAAGAAGCCGTCAATCACTGTTGTCCAAGGCCCTAAGCCCGGCAAACCCACAGATCTTTCCAGGATGCGACAAATACTGCTAAAGCTGAAGCATACACCACCACCTCACATGATTCCCCCACCACCTGCTCCTGCTAAAGATGCTAAAGACGCAAAGGATGGAAAAGAAACATCATCTAAAGTAACTGGGTCAGCAGCTGAAGGTGCATCAGGATCACAACCAAAGGATGTGGCCTCTAACGGCCCAGCAGAGGAACCCCAGAAAGAAGCCTCTGCGACCGAGGACCAACCTGCTGCATAA
Protein sequence

>Msa0233980

MSSSFDAFTDDLNVNSSSPHNFAASDQDDTFSGYGGYSNFDGDVTVDHSAAETTSPEIYGFSDPNPGYSPSPFESVTVENGNDNGNGYGDDDGVFVSDGPILPPPGEMESEEGYALREWRRQNAIELEEKEKREKEMRLKIIEEAEEYKVAFYEKRKLNVETNKVQNREREKLFVANQEKFHKEADKAYWKTIAELIPREVANIEKRRGKKDQDKKPSITVVQGPKPGKPTDLSRMRQILLKLKHTPPPHMIPPPPAPAKDAKDAKDGKETSSKVTGSAAEGASGSQPKDVASNGPAEEPQKEASATEDQPAA*