AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0312580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312580 MtrunA17_Chr2g0281981 99.042 313 3 0 1 313 1 313 0.0 634
Msa0312580 MtrunA17_Chr4g0047571 71.523 302 73 5 21 313 9 306 1.02e-132 379
Msa0312580 MtrunA17_Chr8g0387061 54.286 315 116 9 8 313 31 326 1.23e-80 248
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312580 AT2G20760.1 56.209 306 106 8 21 313 27 317 8.06e-79 243
Msa0312580 AT2G40060.1 53.509 228 76 4 30 251 25 228 2.31e-70 219
Msa0312580 AT3G51890.1 66.038 159 51 1 101 259 85 240 2.63e-62 198

Find 127 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTCGCAGAGGCTTCTTTC+TGG 0.092482 2_4:-7741435 None:intergenic
TCTTTCTGGGGTTCCTCTGC+TGG 0.195125 2_4:-7741421 None:intergenic
CATTGTAGTACCTGCATTAA+AGG 0.217820 2_4:+7741586 Msa0312580:three_prime_UTR
GTTTGCCGGGCTTAGGGCCT+TGG 0.222402 2_4:-7741201 None:intergenic
TATTAGTTCCTAATGCTTAT+TGG 0.271513 2_4:+7741560 Msa0312580:three_prime_UTR
GAAACATCATCTAAAGTAAC+TGG 0.273669 2_4:+7741343 Msa0312580:CDS
TGAACACTGCATGTGCAAAA+AGG 0.289159 2_4:-7741518 None:intergenic
GGTGACATCGCCGTCGAAAT+TGG 0.302399 2_4:-7738088 None:intergenic
AAGAGGCAGACAAAGCTTAT+TGG 0.306471 2_4:+7741083 Msa0312580:CDS
CGACCTTTATAGGCATGTTT+TGG 0.312515 2_4:+7741796 Msa0312580:three_prime_UTR
TGAGGAGGCTGAGGAGTATA+AGG 0.315912 2_4:+7740864 Msa0312580:CDS
GGTCGCAGAGGCTTCTTTCT+GGG 0.316434 2_4:-7741434 None:intergenic
GGAAAGATCTGTGGGTTTGC+CGG 0.324935 2_4:-7741215 None:intergenic
ACATGTAGATTCAGTGTTCA+TGG 0.339439 2_4:+7741643 Msa0312580:three_prime_UTR
TTCCTCTGCTGGGCCGTTAG+AGG 0.340463 2_4:-7741410 None:intergenic
CACAAGTAATCGACCTTTAT+AGG 0.345031 2_4:+7741786 Msa0312580:three_prime_UTR
AACGATAACGGAAACGGTTA+TGG 0.352071 2_4:+7738219 Msa0312580:CDS
CTCCTTCTCCTCTAGCTCAA+TGG 0.361178 2_4:-7740809 None:intergenic
TCTGTGGGTTTGCCGGGCTT+AGG 0.365337 2_4:-7741208 None:intergenic
AGCTAGAGGAGAAGGAGAAA+AGG 0.369546 2_4:+7740815 Msa0312580:CDS
CGACCAAAACATGCCTATAA+AGG 0.369990 2_4:-7741799 None:intergenic
ATTGGAGTAACCACCGTAAC+CGG 0.372444 2_4:-7738070 None:intergenic
CTGTGGGTTTGCCGGGCTTA+GGG 0.379243 2_4:-7741207 None:intergenic
CCGTTAGAGGCCACATCCTT+TGG 0.394016 2_4:-7741397 None:intergenic
CTTTCTGGGGTTCCTCTGCT+GGG 0.395967 2_4:-7741420 None:intergenic
CTCTCCTTCTCCGTTTGAAT+CGG 0.398479 2_4:+7738179 Msa0312580:CDS
GCAAACCCACAGATCTTTCC+AGG 0.408467 2_4:+7741218 Msa0312580:CDS
TGTTTCTCTCTCTAGAAATT+CGG 0.411241 2_4:-7737946 None:intergenic
GAAAGATCTGTGGGTTTGCC+GGG 0.421847 2_4:-7741214 None:intergenic
GAATCGGTTACTGTAGAAAA+CGG 0.424815 2_4:+7738195 Msa0312580:CDS
AATGTGCTAATGGCTTTGTT+TGG 0.424986 2_4:-7737899 None:intergenic
CAATGCAACCAATAAGCATT+AGG 0.426186 2_4:-7741568 None:intergenic
TGACACTTGGAAAATATATC+AGG 0.433473 2_4:-7741720 None:intergenic
GATCAAGACGACACCTTCTC+CGG 0.433643 2_4:+7738051 Msa0312580:CDS
GCTAGAGGAGAAGGAGAAAA+GGG 0.438393 2_4:+7740816 Msa0312580:CDS
GACGACACCTTCTCCGGTTA+CGG 0.443450 2_4:+7738057 Msa0312580:CDS
TTCATTAAAACCTTTAATGC+AGG 0.445948 2_4:-7741596 None:intergenic
TCAGCAGCTGAAGGTGCATC+AGG 0.447568 2_4:+7741367 Msa0312580:CDS
CTTGTGTTATAGACAATGAC+TGG 0.454759 2_4:-7741769 None:intergenic
GAAGATTATTGAGGAGGCTG+AGG 0.457014 2_4:+7740855 Msa0312580:CDS
TCTTTAGCAGGAGCAGGTGG+TGG 0.458003 2_4:-7741295 None:intergenic
AATGAAATGAAATGTGCTAA+TGG 0.463790 2_4:-7737909 None:intergenic
TAGCAGTATTTGTCGCATCC+TGG 0.466048 2_4:-7741236 None:intergenic
AATCGGTTACTGTAGAAAAC+GGG 0.471773 2_4:+7738196 Msa0312580:CDS
ACAAGGTTCAAAATAGAGAA+AGG 0.472036 2_4:+7740926 Msa0312580:CDS
CCTTCCTCCACCTGGTGAGA+TGG 0.476417 2_4:+7738278 Msa0312580:CDS
AGAAGGAGAGTAACCAGGAT+TGG 0.477559 2_4:-7738166 None:intergenic
GCGTCTTTAGCATCTTTAGC+AGG 0.478410 2_4:-7741307 None:intergenic
TTAGCATCTTTAGCAGGAGC+AGG 0.482630 2_4:-7741301 None:intergenic
GAAGGAGAGTAACCAGGATT+GGG 0.484433 2_4:-7738165 None:intergenic
GTAGAAAACGGGAACGATAA+CGG 0.485632 2_4:+7738207 Msa0312580:CDS
GGTCCGATCCTTCCTCCACC+TGG 0.491267 2_4:+7738270 Msa0312580:CDS
AGGTGGCTTTCTATGAGAAA+AGG 0.491336 2_4:+7740884 Msa0312580:CDS
AATGCGATTGAAGATTATTG+AGG 0.496048 2_4:+7740846 Msa0312580:CDS
CTTTAGCAGGAGCAGGTGGT+GGG 0.504213 2_4:-7741294 None:intergenic
TTAGCAGGAGCAGGTGGTGG+GGG 0.510264 2_4:-7741292 None:intergenic
GTCGCAGAGGCTTCTTTCTG+GGG 0.515607 2_4:-7741433 None:intergenic
TGCCATTGAGCTAGAGGAGA+AGG 0.516040 2_4:+7740807 Msa0312580:CDS
GGATTCAGTGATCCCAATCC+TGG 0.519749 2_4:+7738153 Msa0312580:CDS
GTTGTCCAAGGCCCTAAGCC+CGG 0.522136 2_4:+7741196 Msa0312580:CDS
CAAGGTTCAAAATAGAGAAA+GGG 0.525223 2_4:+7740927 Msa0312580:CDS
AAGGTTACGCTCTTCGTGAA+TGG 0.527926 2_4:+7738310 Msa0312580:CDS
TCACTGAATCCGTAGATCTC+CGG 0.530021 2_4:-7738141 None:intergenic
ACGAGGCAAAATTATGCAGC+AGG 0.532050 2_4:-7741466 None:intergenic
GTCGTCAGTGAAAGCGTCGA+AGG 0.533146 2_4:-7737986 None:intergenic
TCTACAGTAACCGATTCAAA+CGG 0.534276 2_4:-7738189 None:intergenic
CCTTGGACAACAGTGATTGA+CGG 0.539024 2_4:-7741184 None:intergenic
TCGCATCCTGGAAAGATCTG+TGG 0.539524 2_4:-7741224 None:intergenic
GAAAGAAGCCTCTGCGACCG+AGG 0.541513 2_4:+7741438 Msa0312580:CDS
CGCATCCTGGAAAGATCTGT+GGG 0.542779 2_4:-7741223 None:intergenic
GAACTTATTAAGAGGGAAGC+TGG 0.544539 2_4:+7741821 Msa0312580:three_prime_UTR
GGAGAAGGTGTCGTCTTGAT+CGG 0.546309 2_4:-7738049 None:intergenic
TCAAGAGAAGTTTCACAAAG+AGG 0.547541 2_4:+7741066 Msa0312580:CDS
AATGGAGACTCAGCAACTCA+TGG 0.549948 2_4:-7741845 None:intergenic
GACGTGAAGTTCAGTGCTGT+TGG 0.550763 2_4:-7737877 None:intergenic
TTTAGCAGGAGCAGGTGGTG+GGG 0.553305 2_4:-7741293 None:intergenic
ACGCTCTTCGTGAATGGCGC+CGG 0.553734 2_4:+7738316 Msa0312580:CDS
AACGGGAACGATAACGGAAA+CGG 0.554690 2_4:+7738213 Msa0312580:CDS
CCAAAGGATGTGGCCTCTAA+CGG 0.555585 2_4:+7741397 Msa0312580:CDS
CCATCTCACCAGGTGGAGGA+AGG 0.556654 2_4:-7738278 None:intergenic
GACTCCATCTCACCAGGTGG+AGG 0.561037 2_4:-7738282 None:intergenic
CGCCGCTGAAACTACTTCAC+CGG 0.562245 2_4:+7738122 Msa0312580:CDS
GATGCTAAAGACGCAAAGGA+TGG 0.566024 2_4:+7741316 Msa0312580:CDS
TCAAAATAGAGAAAGGGAGA+AGG 0.567942 2_4:+7740933 Msa0312580:CDS
GGCAAAATTATGCAGCAGGT+TGG 0.569456 2_4:-7741462 None:intergenic
TCAAAATGCCATTGAGCTAG+AGG 0.570686 2_4:+7740801 Msa0312580:CDS
CCGTCAATCACTGTTGTCCA+AGG 0.577884 2_4:+7741184 Msa0312580:CDS
ACTACTTCACCGGAGATCTA+CGG 0.578559 2_4:+7738132 Msa0312580:CDS
GGTGAGATGGAGTCGGAGGA+AGG 0.580041 2_4:+7738291 Msa0312580:CDS
GGTGGTTACTCCAATTTCGA+CGG 0.586145 2_4:+7738078 Msa0312580:CDS
GCATCTTTAGCAGGAGCAGG+TGG 0.590565 2_4:-7741298 None:intergenic
TTTGGTCGAACTTATTAAGA+GGG 0.591202 2_4:+7741814 Msa0312580:three_prime_UTR
TCAATGTTGGCAACCTCACG+AGG 0.591611 2_4:-7741127 None:intergenic
AGGTTGCCAACATTGAAAAG+AGG 0.596082 2_4:+7741134 Msa0312580:CDS
GGTGTCGTCTTGATCGGAGG+CGG 0.596468 2_4:-7738043 None:intergenic
TCACCAGGTGGAGGAAGGAT+CGG 0.597105 2_4:-7738273 None:intergenic
GCAGTGTTCAATGAATCTCT+TGG 0.598486 2_4:+7741531 Msa0312580:three_prime_UTR
GGCCTCTAACGGCCCAGCAG+AGG 0.599204 2_4:+7741408 Msa0312580:CDS
AGGATCACAACCAAAGGATG+TGG 0.599390 2_4:+7741387 Msa0312580:CDS
TCAGACAAATGATTGAGAGA+AGG 0.599585 2_4:-7741491 None:intergenic
TGCAGAGCTCATTCCTCGTG+AGG 0.599727 2_4:+7741114 Msa0312580:CDS
GCGATTGAAGATTATTGAGG+AGG 0.599831 2_4:+7740849 Msa0312580:CDS
TCGGAGGCGGCGAAGTTGTG+AGG 0.600626 2_4:-7738030 None:intergenic
GTAACCACCGTAACCGGAGA+AGG 0.602987 2_4:-7738064 None:intergenic
TCCTCCGACTCCATCTCACC+AGG 0.604179 2_4:-7738288 None:intergenic
GTAACTGGGTCAGCAGCTGA+AGG 0.610261 2_4:+7741358 Msa0312580:CDS
TGCATCAGGATCACAACCAA+AGG 0.610972 2_4:+7741381 Msa0312580:CDS
TCCACCTGGTGAGATGGAGT+CGG 0.612364 2_4:+7738284 Msa0312580:CDS
ACCTGGTGAGATGGAGTCGG+AGG 0.613781 2_4:+7738287 Msa0312580:CDS
GACACCTTCTCCGGTTACGG+TGG 0.615312 2_4:+7738060 Msa0312580:CDS
TAAAGATGCTAAAGACGCAA+AGG 0.617813 2_4:+7741312 Msa0312580:CDS
TTATGCAGCAGGTTGGTCCT+CGG 0.620437 2_4:-7741455 None:intergenic
GAAGGTGTCGTCTTGATCGG+AGG 0.622038 2_4:-7738046 None:intergenic
CTCCGGTGAAGTAGTTTCAG+CGG 0.641225 2_4:-7738124 None:intergenic
AACGGAGAAGGAGAGTAACC+AGG 0.644232 2_4:-7738171 None:intergenic
TCCGACTCCATCTCACCAGG+TGG 0.644893 2_4:-7738285 None:intergenic
TTCAGCGGCGGAGTGATCGA+CGG 0.648198 2_4:-7738109 None:intergenic
GCCAACATTGAAAAGAGGAG+AGG 0.649076 2_4:+7741139 Msa0312580:CDS
AGGTTGGTCCTCGGTCGCAG+AGG 0.650661 2_4:-7741446 None:intergenic
TTGTGTTATAGACAATGACT+GGG 0.658073 2_4:-7741768 None:intergenic
CGGTGAAGTAGTTTCAGCGG+CGG 0.659180 2_4:-7738121 None:intergenic
AAACATCATCTAAAGTAACT+GGG 0.661612 2_4:+7741344 Msa0312580:CDS
GCTTAATGTTGAGACTAACA+AGG 0.677288 2_4:+7740909 Msa0312580:CDS
GTAACCGATTCAAACGGAGA+AGG 0.683900 2_4:-7738183 None:intergenic
GGAGGCTGAGGAGTATAAGG+TGG 0.692623 2_4:+7740867 Msa0312580:CDS
ATGATTGAGAGAAGGAAACG+AGG 0.694344 2_4:-7741483 None:intergenic
AACGGTTATGGTGATGATGA+CGG 0.705580 2_4:+7738231 Msa0312580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTGATATTTTACTTA+TGG + chr2_4:7738712-7738731 Msa0312580:intron 10.0%
!!! TTTTTAGAAAAAATAGATTT+TGG + chr2_4:7739253-7739272 Msa0312580:intron 10.0%
!!! GTTCAAATTAAACATTTTTT+AGG + chr2_4:7738890-7738909 Msa0312580:intron 15.0%
!!! ATATTTAAGGTAACATTATT+GGG + chr2_4:7739015-7739034 Msa0312580:intron 15.0%
!!! ATCTATTTTTTCTAAAAACA+AGG - chr2_4:7739251-7739270 None:intergenic 15.0%
!!! GTTTTTATAATAGATAATCA+TGG + chr2_4:7739444-7739463 Msa0312580:intron 15.0%
!!! TGGATTTAACTTAATAATAA+AGG + chr2_4:7739893-7739912 Msa0312580:intron 15.0%
!!! GGATTTAACTTAATAATAAA+GGG + chr2_4:7739894-7739913 Msa0312580:intron 15.0%
!!! AAATTCATTTTTTTAACCAT+AGG - chr2_4:7740126-7740145 None:intergenic 15.0%
!! AAATATTTATATTAATGGCA+AGG + chr2_4:7740233-7740252 Msa0312580:intron 15.0%
!! TATAAATTGAAATTTGTCTA+TGG + chr2_4:7741024-7741043 Msa0312580:intron 15.0%
!! AGTAATTAGGATTATGAATT+AGG + chr2_4:7738445-7738464 Msa0312580:intron 20.0%
!! AATTAGTAAAATTCTATGCT+AGG + chr2_4:7738613-7738632 Msa0312580:intron 20.0%
!! ATTAGTAAAATTCTATGCTA+GGG + chr2_4:7738614-7738633 Msa0312580:intron 20.0%
!! TTGAATTTGTAATATGAAAG+AGG + chr2_4:7738689-7738708 Msa0312580:intron 20.0%
!!! TGATATTTTACTTATGGTAA+TGG + chr2_4:7738718-7738737 Msa0312580:intron 20.0%
!!! TAATTTGTATGTTAACCAAA+GGG + chr2_4:7738946-7738965 Msa0312580:intron 20.0%
!!! CATATTTAAGGTAACATTAT+TGG + chr2_4:7739014-7739033 Msa0312580:intron 20.0%
!!! AGTAATAACTTTTCATTTTG+AGG + chr2_4:7739286-7739305 Msa0312580:intron 20.0%
!! CACTATTAGAATAATAAAAG+TGG + chr2_4:7739350-7739369 Msa0312580:intron 20.0%
!!! GAATAATAAAAGTGGTTTTT+TGG + chr2_4:7739358-7739377 Msa0312580:intron 20.0%
!!! AAAAAAGCATTGATCTTATA+TGG + chr2_4:7739970-7739989 Msa0312580:intron 20.0%
!! AAAATTGACTAGAAATAGTA+GGG - chr2_4:7740037-7740056 None:intergenic 20.0%
!! TACATAAAAAATTGATCACA+CGG - chr2_4:7740169-7740188 None:intergenic 20.0%
!! CAAGTAACAATACAAAAATT+AGG + chr2_4:7740193-7740212 Msa0312580:intron 20.0%
!!! GAAACATTTATGTATTTTGT+TGG + chr2_4:7740270-7740289 Msa0312580:intron 20.0%
!!! CTATTATTTTAGGTTGTAAT+AGG - chr2_4:7740361-7740380 None:intergenic 20.0%
!! CTATTACAACCTAAAATAAT+AGG + chr2_4:7740359-7740378 Msa0312580:intron 20.0%
!! TAACAGGAATTTATAACAAT+AGG - chr2_4:7740424-7740443 None:intergenic 20.0%
!! TATAAATTCCTGTTACAATA+AGG + chr2_4:7740429-7740448 Msa0312580:intron 20.0%
!! ATAAATTCCTGTTACAATAA+GGG + chr2_4:7740430-7740449 Msa0312580:intron 20.0%
!! ATCCATTATGTGTTTATTAT+GGG + chr2_4:7740461-7740480 Msa0312580:intron 20.0%
!!! ATTACCAGCATTAAATTTTT+TGG - chr2_4:7740616-7740635 None:intergenic 20.0%
!!! TTTTAGTCCAATAAAGATTT+AGG + chr2_4:7740712-7740731 Msa0312580:intron 20.0%
!! AAAAAGATAAATCAAAATGC+TGG - chr2_4:7740968-7740987 None:intergenic 20.0%
! AATGAAATGAAATGTGCTAA+TGG - chr2_4:7737912-7737931 None:intergenic 25.0%
! AACTTCATAATCGAATTTCT+AGG - chr2_4:7738409-7738428 None:intergenic 25.0%
!!! TTCGATTATGAAGTTTTTTG+CGG + chr2_4:7738414-7738433 Msa0312580:intron 25.0%
!!! AGGAATTGATTTGTATATAC+TGG + chr2_4:7738637-7738656 Msa0312580:intron 25.0%
! TGTTACATGTAGAAAAATCT+CGG + chr2_4:7738868-7738887 Msa0312580:intron 25.0%
!! GTAATTTGTATGTTAACCAA+AGG + chr2_4:7738945-7738964 Msa0312580:intron 25.0%
! TCTAGCAATTTACAAAAAAC+TGG + chr2_4:7739071-7739090 Msa0312580:intron 25.0%
! CTAGCAATTTACAAAAAACT+GGG + chr2_4:7739072-7739091 Msa0312580:intron 25.0%
! ATTTAAGAAATGTGTTCAAG+AGG - chr2_4:7739131-7739150 None:intergenic 25.0%
! TATCTATTATAAAAACCCAC+TGG - chr2_4:7739440-7739459 None:intergenic 25.0%
!! ATTTAGGGAAAGTATAAACA+TGG - chr2_4:7739688-7739707 None:intergenic 25.0%
!! TAAAACAGACAAGGTATTTA+GGG - chr2_4:7739703-7739722 None:intergenic 25.0%
!! TCTGTTTTACATTGAGATAA+AGG + chr2_4:7739714-7739733 Msa0312580:intron 25.0%
!! CTGTTTTACATTGAGATAAA+GGG + chr2_4:7739715-7739734 Msa0312580:intron 25.0%
!!! CTTAATAATAAAGGGTGTTT+CGG + chr2_4:7739902-7739921 Msa0312580:intron 25.0%
! GAAAATTGACTAGAAATAGT+AGG - chr2_4:7740038-7740057 None:intergenic 25.0%
!!! GTGTGATCAATTTTTTATGT+AGG + chr2_4:7740168-7740187 Msa0312580:intron 25.0%
!! GAACTCTAAACATTTTATCT+AGG - chr2_4:7740298-7740317 None:intergenic 25.0%
! GATCCATTATGTGTTTATTA+TGG + chr2_4:7740460-7740479 Msa0312580:intron 25.0%
! AATTATCTTGTATTTGCAAG+AGG + chr2_4:7740485-7740504 Msa0312580:intron 25.0%
! AATAGCTCCTAAATCTTTAT+TGG - chr2_4:7740722-7740741 None:intergenic 25.0%
!! AAACATCATCTAAAGTAACT+GGG + chr2_4:7741344-7741363 Msa0312580:CDS 25.0%
! TATTAGTTCCTAATGCTTAT+TGG + chr2_4:7741560-7741579 Msa0312580:three_prime_UTR 25.0%
! TTCATTAAAACCTTTAATGC+AGG - chr2_4:7741599-7741618 None:intergenic 25.0%
! TGTTTCTCTCTCTAGAAATT+CGG - chr2_4:7737949-7737968 None:intergenic 30.0%
TCCAACAAAATTCAACTTAC+CGG - chr2_4:7738338-7738357 None:intergenic 30.0%
! TGCGGTTTTTGTAAGTAATT+AGG + chr2_4:7738432-7738451 Msa0312580:intron 30.0%
!! TTACTTATGGTAATGGAAGT+TGG + chr2_4:7738725-7738744 Msa0312580:intron 30.0%
TTGCACTTAGATTTCAATCT+TGG + chr2_4:7738808-7738827 Msa0312580:intron 30.0%
! AAGGTAACATTATTGGGTTT+TGG + chr2_4:7739021-7739040 Msa0312580:intron 30.0%
GGTCATAATAAATCTTGATG+AGG + chr2_4:7739093-7739112 Msa0312580:intron 30.0%
TAAATTACATCAGAGGAAGA+GGG - chr2_4:7739509-7739528 None:intergenic 30.0%
ATTTACAGAGCGATAGATAT+TGG + chr2_4:7739524-7739543 Msa0312580:intron 30.0%
TGTTACTAGATGTTATAAGC+AGG + chr2_4:7739631-7739650 Msa0312580:intron 30.0%
! GAAAGTATAAACATGGATAG+GGG - chr2_4:7739681-7739700 None:intergenic 30.0%
! GGAAAGTATAAACATGGATA+GGG - chr2_4:7739682-7739701 None:intergenic 30.0%
! GTAAAACAGACAAGGTATTT+AGG - chr2_4:7739704-7739723 None:intergenic 30.0%
ATCTCAATGTAAAACAGACA+AGG - chr2_4:7739712-7739731 None:intergenic 30.0%
CATAAAGATCGTGTTGAAAA+AGG - chr2_4:7739786-7739805 None:intergenic 30.0%
!!! CTTTTTCAACACGATCTTTA+TGG + chr2_4:7739784-7739803 Msa0312580:intron 30.0%
ATAGTTTAATGAGACTTGCA+TGG + chr2_4:7739873-7739892 Msa0312580:intron 30.0%
AATAGTGTGTTGAAGATTGT+TGG + chr2_4:7739925-7739944 Msa0312580:intron 30.0%
!! TCGCATTGACCTATTATTTT+AGG - chr2_4:7740371-7740390 None:intergenic 30.0%
TGCCCATAATAAACACATAA+TGG - chr2_4:7740466-7740485 None:intergenic 30.0%
TTTGAACCAGTGATTTCATA+CGG + chr2_4:7740520-7740539 Msa0312580:intron 30.0%
TGAGCCAAAAAATTTAATGC+TGG + chr2_4:7740609-7740628 Msa0312580:intron 30.0%
CCTCTAATAACTTTACAAAC+AGG - chr2_4:7740647-7740666 None:intergenic 30.0%
CCTGTTTGTAAAGTTATTAG+AGG + chr2_4:7740644-7740663 Msa0312580:intron 30.0%
AATGCGATTGAAGATTATTG+AGG + chr2_4:7740846-7740865 Msa0312580:CDS 30.0%
ACAAGGTTCAAAATAGAGAA+AGG + chr2_4:7740926-7740945 Msa0312580:CDS 30.0%
CAAGGTTCAAAATAGAGAAA+GGG + chr2_4:7740927-7740946 Msa0312580:CDS 30.0%
! GAAACATCATCTAAAGTAAC+TGG + chr2_4:7741343-7741362 Msa0312580:CDS 30.0%
TGACACTTGGAAAATATATC+AGG - chr2_4:7741723-7741742 None:intergenic 30.0%
CCAATAGAAAAATTGACACT+TGG - chr2_4:7741736-7741755 None:intergenic 30.0%
! CCAAGTGTCAATTTTTCTAT+TGG + chr2_4:7741733-7741752 Msa0312580:three_prime_UTR 30.0%
TTGTGTTATAGACAATGACT+GGG - chr2_4:7741771-7741790 None:intergenic 30.0%
! TTTTGGTCGAACTTATTAAG+AGG + chr2_4:7741813-7741832 Msa0312580:three_prime_UTR 30.0%
TTTGGTCGAACTTATTAAGA+GGG + chr2_4:7741814-7741833 Msa0312580:three_prime_UTR 30.0%
!! AATGTGCTAATGGCTTTGTT+TGG - chr2_4:7737902-7737921 None:intergenic 35.0%
! TCTACAGTAACCGATTCAAA+CGG - chr2_4:7738192-7738211 None:intergenic 35.0%
GAATCGGTTACTGTAGAAAA+CGG + chr2_4:7738195-7738214 Msa0312580:CDS 35.0%
AATCGGTTACTGTAGAAAAC+GGG + chr2_4:7738196-7738215 Msa0312580:CDS 35.0%
! TGCTATTGCGATTTTACTTG+TGG + chr2_4:7738543-7738562 Msa0312580:intron 35.0%
AGTAAAATTCTATGCTAGGG+AGG + chr2_4:7738617-7738636 Msa0312580:intron 35.0%
!! ACTGGTATCAAGAGTATCTT+TGG + chr2_4:7738655-7738674 Msa0312580:intron 35.0%
!! CTGGTATCAAGAGTATCTTT+GGG + chr2_4:7738656-7738675 Msa0312580:intron 35.0%
ATTCGTTAGGGTAAATTCCA+TGG + chr2_4:7738762-7738781 Msa0312580:intron 35.0%
CTACATGTAACAATCGAACT+CGG - chr2_4:7738860-7738879 None:intergenic 35.0%
GGATTGGATGGTCATATTTA+AGG + chr2_4:7739002-7739021 Msa0312580:intron 35.0%
!! TTCCGAGTTCTCTAAGATTT+AGG + chr2_4:7739187-7739206 Msa0312580:intron 35.0%
!! TCCGAGTTCTCTAAGATTTA+GGG + chr2_4:7739188-7739207 Msa0312580:intron 35.0%
ACCCTAAATCTTAGAGAACT+CGG - chr2_4:7739192-7739211 None:intergenic 35.0%
! GACTAAGGGTTCATTTGTTT+TGG - chr2_4:7739418-7739437 None:intergenic 35.0%
ATAAAAACCCACTGGACTAA+GGG - chr2_4:7739432-7739451 None:intergenic 35.0%
TATAAAAACCCACTGGACTA+AGG - chr2_4:7739433-7739452 None:intergenic 35.0%
GTAAATTACATCAGAGGAAG+AGG - chr2_4:7739510-7739529 None:intergenic 35.0%
CGATAGATATTGGACAAATC+TGG + chr2_4:7739534-7739553 Msa0312580:intron 35.0%
ATGTTATAAGCAGGTCTTCA+TGG + chr2_4:7739640-7739659 Msa0312580:intron 35.0%
! GGGAAAGTATAAACATGGAT+AGG - chr2_4:7739683-7739702 None:intergenic 35.0%
CTCACTGTATAAATCGTGAA+GGG - chr2_4:7739746-7739765 None:intergenic 35.0%
TCTCACTGTATAAATCGTGA+AGG - chr2_4:7739747-7739766 None:intergenic 35.0%
TCAACACGATCTTTATGGTT+AGG + chr2_4:7739789-7739808 Msa0312580:intron 35.0%
CAACACGATCTTTATGGTTA+GGG + chr2_4:7739790-7739809 Msa0312580:intron 35.0%
AACACGATCTTTATGGTTAG+GGG + chr2_4:7739791-7739810 Msa0312580:intron 35.0%
ATCAAACAGATGAGCAATCA+TGG - chr2_4:7740060-7740079 None:intergenic 35.0%
AGTCATAGCATAGTTAACGT+AGG + chr2_4:7740394-7740413 Msa0312580:intron 35.0%
GTCATAGCATAGTTAACGTA+GGG + chr2_4:7740395-7740414 Msa0312580:intron 35.0%
CATGACACAATGAATGTCTT+TGG + chr2_4:7740764-7740783 Msa0312580:intron 35.0%
!!! AATGGCATTTTGACTGTACA+AGG - chr2_4:7740794-7740813 None:intergenic 35.0%
GCTTAATGTTGAGACTAACA+AGG + chr2_4:7740909-7740928 Msa0312580:CDS 35.0%
TCAAAATAGAGAAAGGGAGA+AGG + chr2_4:7740933-7740952 Msa0312580:CDS 35.0%
TCAAGAGAAGTTTCACAAAG+AGG + chr2_4:7741066-7741085 Msa0312580:CDS 35.0%
TAAAGATGCTAAAGACGCAA+AGG + chr2_4:7741312-7741331 Msa0312580:CDS 35.0%
TCAGACAAATGATTGAGAGA+AGG - chr2_4:7741494-7741513 None:intergenic 35.0%
CAATGCAACCAATAAGCATT+AGG - chr2_4:7741571-7741590 None:intergenic 35.0%
CATTGTAGTACCTGCATTAA+AGG + chr2_4:7741586-7741605 Msa0312580:three_prime_UTR 35.0%
ACATGTAGATTCAGTGTTCA+TGG + chr2_4:7741643-7741662 Msa0312580:three_prime_UTR 35.0%
!!! TCATGAGATTGCTGACTTTT+TGG + chr2_4:7741695-7741714 Msa0312580:three_prime_UTR 35.0%
!!! CATGAGATTGCTGACTTTTT+GGG + chr2_4:7741696-7741715 Msa0312580:three_prime_UTR 35.0%
CTTGTGTTATAGACAATGAC+TGG - chr2_4:7741772-7741791 None:intergenic 35.0%
CACAAGTAATCGACCTTTAT+AGG + chr2_4:7741786-7741805 Msa0312580:three_prime_UTR 35.0%
GTAGAAAACGGGAACGATAA+CGG + chr2_4:7738207-7738226 Msa0312580:CDS 40.0%
!! AACGATAACGGAAACGGTTA+TGG + chr2_4:7738219-7738238 Msa0312580:CDS 40.0%
! AACGGTTATGGTGATGATGA+CGG + chr2_4:7738231-7738250 Msa0312580:CDS 40.0%
!!! GACGGTGTTTTTGTTTCTGA+TGG + chr2_4:7738249-7738268 Msa0312580:CDS 40.0%
!! GCCGGTAAGTTGAATTTTGT+TGG + chr2_4:7738334-7738353 Msa0312580:intron 40.0%
!! GTATCAAGAGTATCTTTGGG+TGG + chr2_4:7738659-7738678 Msa0312580:intron 40.0%
! CCATAATCTTTTCTGTGCCA+TGG - chr2_4:7738782-7738801 None:intergenic 40.0%
CCATGGCACAGAAAAGATTA+TGG + chr2_4:7738779-7738798 Msa0312580:intron 40.0%
TGGCACAGAAAAGATTATGG+TGG + chr2_4:7738782-7738801 Msa0312580:intron 40.0%
GCGTGTACTGTTCACTTTAT+TGG + chr2_4:7738919-7738938 Msa0312580:intron 40.0%
CAATCCAGCTTCAAATAGCA+AGG - chr2_4:7738988-7739007 None:intergenic 40.0%
!! CTTGCTATTTGAAGCTGGAT+TGG + chr2_4:7738986-7739005 Msa0312580:intron 40.0%
! CTATTTGAAGCTGGATTGGA+TGG + chr2_4:7738990-7739009 Msa0312580:intron 40.0%
AGACAGATCCAAGTTCAACA+GGG - chr2_4:7739054-7739073 None:intergenic 40.0%
TAGACAGATCCAAGTTCAAC+AGG - chr2_4:7739055-7739074 None:intergenic 40.0%
AAATGAACCCTTAGTCCAGT+GGG + chr2_4:7739422-7739441 Msa0312580:intron 40.0%
CGCTCTGTAAATTACATCAG+AGG - chr2_4:7739516-7739535 None:intergenic 40.0%
GATAGGGGAGGAATATGTTA+GGG - chr2_4:7739666-7739685 None:intergenic 40.0%
AGTATAAACATGGATAGGGG+AGG - chr2_4:7739678-7739697 None:intergenic 40.0%
TTCTTGAGTTTCCCTGGATA+AGG + chr2_4:7739817-7739836 Msa0312580:intron 40.0%
!! GGTAAAGTGTTGTGACTGTA+AGG - chr2_4:7740016-7740035 None:intergenic 40.0%
TTAACCATAGGACAGTTGCT+CGG - chr2_4:7740114-7740133 None:intergenic 40.0%
TGGCAAGGTTCATGCTTATT+AGG + chr2_4:7740248-7740267 Msa0312580:intron 40.0%
! CTGTTACAATAAGGGAGCAT+GGG + chr2_4:7740438-7740457 Msa0312580:intron 40.0%
ACTAGTGTGAAGAGAAGCTT+TGG - chr2_4:7740566-7740585 None:intergenic 40.0%
!!! GCATTTTGACTGTACAAGGA+AGG - chr2_4:7740790-7740809 None:intergenic 40.0%
TCAAAATGCCATTGAGCTAG+AGG + chr2_4:7740801-7740820 Msa0312580:CDS 40.0%
GCGATTGAAGATTATTGAGG+AGG + chr2_4:7740849-7740868 Msa0312580:CDS 40.0%
AGGTGGCTTTCTATGAGAAA+AGG + chr2_4:7740884-7740903 Msa0312580:CDS 40.0%
AATAGAGAAAGGGAGAAGGT+AGG + chr2_4:7740937-7740956 Msa0312580:intron 40.0%
AAGAGGCAGACAAAGCTTAT+TGG + chr2_4:7741083-7741102 Msa0312580:CDS 40.0%
AGGTTGCCAACATTGAAAAG+AGG + chr2_4:7741134-7741153 Msa0312580:CDS 40.0%
ATGATTGAGAGAAGGAAACG+AGG - chr2_4:7741486-7741505 None:intergenic 40.0%
GAACACTGCATGTGCAAAAA+GGG - chr2_4:7741520-7741539 None:intergenic 40.0%
TGAACACTGCATGTGCAAAA+AGG - chr2_4:7741521-7741540 None:intergenic 40.0%
GCAGTGTTCAATGAATCTCT+TGG + chr2_4:7741531-7741550 Msa0312580:three_prime_UTR 40.0%
! CGACCTTTATAGGCATGTTT+TGG + chr2_4:7741796-7741815 Msa0312580:three_prime_UTR 40.0%
CGACCAAAACATGCCTATAA+AGG - chr2_4:7741802-7741821 None:intergenic 40.0%
GAACTTATTAAGAGGGAAGC+TGG + chr2_4:7741821-7741840 Msa0312580:three_prime_UTR 40.0%
ATTGGAGTAACCACCGTAAC+CGG - chr2_4:7738073-7738092 None:intergenic 45.0%
GGTGGTTACTCCAATTTCGA+CGG + chr2_4:7738078-7738097 Msa0312580:CDS 45.0%
ACTACTTCACCGGAGATCTA+CGG + chr2_4:7738132-7738151 Msa0312580:CDS 45.0%
TCACTGAATCCGTAGATCTC+CGG - chr2_4:7738144-7738163 None:intergenic 45.0%
GAAGGAGAGTAACCAGGATT+GGG - chr2_4:7738168-7738187 None:intergenic 45.0%
AGAAGGAGAGTAACCAGGAT+TGG - chr2_4:7738169-7738188 None:intergenic 45.0%
CTCTCCTTCTCCGTTTGAAT+CGG + chr2_4:7738179-7738198 Msa0312580:CDS 45.0%
! GTAACCGATTCAAACGGAGA+AGG - chr2_4:7738186-7738205 None:intergenic 45.0%
!! AACGGGAACGATAACGGAAA+CGG + chr2_4:7738213-7738232 Msa0312580:CDS 45.0%
AAGGTTACGCTCTTCGTGAA+TGG + chr2_4:7738310-7738329 Msa0312580:CDS 45.0%
!! GGTAATGGAAGTTGGATCTG+CGG + chr2_4:7738733-7738752 Msa0312580:intron 45.0%
ACAATCGAACTCGGTATCCT+GGG - chr2_4:7738851-7738870 None:intergenic 45.0%
AACAATCGAACTCGGTATCC+TGG - chr2_4:7738852-7738871 None:intergenic 45.0%
GTCACGTAATGACTACCCTT+TGG - chr2_4:7738964-7738983 None:intergenic 45.0%
GATATCTCCCCTGTTGAACT+TGG + chr2_4:7739043-7739062 Msa0312580:intron 45.0%
GACAGATCCAAGTTCAACAG+GGG - chr2_4:7739053-7739072 None:intergenic 45.0%
CAAATGAACCCTTAGTCCAG+TGG + chr2_4:7739421-7739440 Msa0312580:intron 45.0%
GGATAGGGGAGGAATATGTT+AGG - chr2_4:7739667-7739686 None:intergenic 45.0%
GGGAAATTCTTGAGTTTCCC+TGG + chr2_4:7739811-7739830 Msa0312580:intron 45.0%
AGTTTCCCTGGATAAGGAGT+AGG + chr2_4:7739823-7739842 Msa0312580:intron 45.0%
GTTTCCCTGGATAAGGAGTA+GGG + chr2_4:7739824-7739843 Msa0312580:intron 45.0%
CCATGCTCCCTTATTGTAAC+AGG - chr2_4:7740440-7740459 None:intergenic 45.0%
CCTGTTACAATAAGGGAGCA+TGG + chr2_4:7740437-7740456 Msa0312580:intron 45.0%
TTGCTGCCGTATGAAATCAC+TGG - chr2_4:7740529-7740548 None:intergenic 45.0%
!! GAAGAGAAGCTTTGGAGCAA+TGG - chr2_4:7740558-7740577 None:intergenic 45.0%
AGCTAGAGGAGAAGGAGAAA+AGG + chr2_4:7740815-7740834 Msa0312580:CDS 45.0%
GCTAGAGGAGAAGGAGAAAA+GGG + chr2_4:7740816-7740835 Msa0312580:CDS 45.0%
GAAGATTATTGAGGAGGCTG+AGG + chr2_4:7740855-7740874 Msa0312580:CDS 45.0%
GCCAACATTGAAAAGAGGAG+AGG + chr2_4:7741139-7741158 Msa0312580:CDS 45.0%
! GCCTCTCCTCTTTTCAATGT+TGG - chr2_4:7741143-7741162 None:intergenic 45.0%
GAGGAGAGGCAAAAAAGATC+AGG + chr2_4:7741153-7741172 Msa0312580:CDS 45.0%
CCTTGGACAACAGTGATTGA+CGG - chr2_4:7741187-7741206 None:intergenic 45.0%
TAGCAGTATTTGTCGCATCC+TGG - chr2_4:7741239-7741258 None:intergenic 45.0%
TTAGCATCTTTAGCAGGAGC+AGG - chr2_4:7741304-7741323 None:intergenic 45.0%
GCGTCTTTAGCATCTTTAGC+AGG - chr2_4:7741310-7741329 None:intergenic 45.0%
GATGCTAAAGACGCAAAGGA+TGG + chr2_4:7741316-7741335 Msa0312580:CDS 45.0%
TGCATCAGGATCACAACCAA+AGG + chr2_4:7741381-7741400 Msa0312580:CDS 45.0%
AGGATCACAACCAAAGGATG+TGG + chr2_4:7741387-7741406 Msa0312580:CDS 45.0%
GGCAAAATTATGCAGCAGGT+TGG - chr2_4:7741465-7741484 None:intergenic 45.0%
ACGAGGCAAAATTATGCAGC+AGG - chr2_4:7741469-7741488 None:intergenic 45.0%
!! ATATGAAATATTTATATTAA+TGG + chr2_4:7740228-7740247 Msa0312580:intron 5.0%
GACGTGAAGTTCAGTGCTGT+TGG - chr2_4:7737880-7737899 None:intergenic 50.0%
!! GGAGAAGGTGTCGTCTTGAT+CGG - chr2_4:7738052-7738071 None:intergenic 50.0%
GATCAAGACGACACCTTCTC+CGG + chr2_4:7738051-7738070 Msa0312580:CDS 50.0%
CTCCGGTGAAGTAGTTTCAG+CGG - chr2_4:7738127-7738146 None:intergenic 50.0%
GGATTCAGTGATCCCAATCC+TGG + chr2_4:7738153-7738172 Msa0312580:CDS 50.0%
AACGGAGAAGGAGAGTAACC+AGG - chr2_4:7738174-7738193 None:intergenic 50.0%
! TCTGCGGTGAGGTATTCGTT+AGG + chr2_4:7738749-7738768 Msa0312580:intron 50.0%
! CTGCGGTGAGGTATTCGTTA+GGG + chr2_4:7738750-7738769 Msa0312580:intron 50.0%
CAATCGAACTCGGTATCCTG+GGG - chr2_4:7738850-7738869 None:intergenic 50.0%
!! GACGCCTTGCTATTTGAAGC+TGG + chr2_4:7738981-7739000 Msa0312580:intron 50.0%
TCGACCCTACTCCTTATCCA+GGG - chr2_4:7739831-7739850 None:intergenic 50.0%
ATCGACCCTACTCCTTATCC+AGG - chr2_4:7739832-7739851 None:intergenic 50.0%
TGCCATTGAGCTAGAGGAGA+AGG + chr2_4:7740807-7740826 Msa0312580:CDS 50.0%
! CTCCTTCTCCTCTAGCTCAA+TGG - chr2_4:7740812-7740831 None:intergenic 50.0%
! TGAGGAGGCTGAGGAGTATA+AGG + chr2_4:7740864-7740883 Msa0312580:CDS 50.0%
TCAATGTTGGCAACCTCACG+AGG - chr2_4:7741130-7741149 None:intergenic 50.0%
CCGTCAATCACTGTTGTCCA+AGG + chr2_4:7741184-7741203 Msa0312580:CDS 50.0%
GAAAGATCTGTGGGTTTGCC+GGG - chr2_4:7741217-7741236 None:intergenic 50.0%
GGAAAGATCTGTGGGTTTGC+CGG - chr2_4:7741218-7741237 None:intergenic 50.0%
GCAAACCCACAGATCTTTCC+AGG + chr2_4:7741218-7741237 Msa0312580:CDS 50.0%
CGCATCCTGGAAAGATCTGT+GGG - chr2_4:7741226-7741245 None:intergenic 50.0%
TCGCATCCTGGAAAGATCTG+TGG - chr2_4:7741227-7741246 None:intergenic 50.0%
CCAAAGGATGTGGCCTCTAA+CGG + chr2_4:7741397-7741416 Msa0312580:CDS 50.0%
!! TTATGCAGCAGGTTGGTCCT+CGG - chr2_4:7741458-7741477 None:intergenic 50.0%
!! GTCGTCAGTGAAAGCGTCGA+AGG - chr2_4:7737989-7738008 None:intergenic 55.0%
!! GAAGGTGTCGTCTTGATCGG+AGG - chr2_4:7738049-7738068 None:intergenic 55.0%
GACGACACCTTCTCCGGTTA+CGG + chr2_4:7738057-7738076 Msa0312580:CDS 55.0%
GTAACCACCGTAACCGGAGA+AGG - chr2_4:7738067-7738086 None:intergenic 55.0%
GGTGACATCGCCGTCGAAAT+TGG - chr2_4:7738091-7738110 None:intergenic 55.0%
CGGTGAAGTAGTTTCAGCGG+CGG - chr2_4:7738124-7738143 None:intergenic 55.0%
CGCCGCTGAAACTACTTCAC+CGG + chr2_4:7738122-7738141 Msa0312580:CDS 55.0%
TCACCAGGTGGAGGAAGGAT+CGG - chr2_4:7738276-7738295 None:intergenic 55.0%
TCCACCTGGTGAGATGGAGT+CGG + chr2_4:7738284-7738303 Msa0312580:CDS 55.0%
TGGAAGTTGGATCTGCGGTG+AGG + chr2_4:7738738-7738757 Msa0312580:intron 55.0%
TTGCGCGTGTTATACACCCC+AGG + chr2_4:7738831-7738850 Msa0312580:intron 55.0%
GGAGTAGGGTCGATCAACTG+AGG + chr2_4:7739838-7739857 Msa0312580:intron 55.0%
! GGAGGCTGAGGAGTATAAGG+TGG + chr2_4:7740867-7740886 Msa0312580:CDS 55.0%
TGCAGAGCTCATTCCTCGTG+AGG + chr2_4:7741114-7741133 Msa0312580:CDS 55.0%
TTTAGCAGGAGCAGGTGGTG+GGG - chr2_4:7741296-7741315 None:intergenic 55.0%
CTTTAGCAGGAGCAGGTGGT+GGG - chr2_4:7741297-7741316 None:intergenic 55.0%
TCTTTAGCAGGAGCAGGTGG+TGG - chr2_4:7741298-7741317 None:intergenic 55.0%
GCATCTTTAGCAGGAGCAGG+TGG - chr2_4:7741301-7741320 None:intergenic 55.0%
GTAACTGGGTCAGCAGCTGA+AGG + chr2_4:7741358-7741377 Msa0312580:CDS 55.0%
! TCAGCAGCTGAAGGTGCATC+AGG + chr2_4:7741367-7741386 Msa0312580:CDS 55.0%
CCGTTAGAGGCCACATCCTT+TGG - chr2_4:7741400-7741419 None:intergenic 55.0%
!! CTTTCTGGGGTTCCTCTGCT+GGG - chr2_4:7741423-7741442 None:intergenic 55.0%
!! TCTTTCTGGGGTTCCTCTGC+TGG - chr2_4:7741424-7741443 None:intergenic 55.0%
GTCGCAGAGGCTTCTTTCTG+GGG - chr2_4:7741436-7741455 None:intergenic 55.0%
GGTCGCAGAGGCTTCTTTCT+GGG - chr2_4:7741437-7741456 None:intergenic 55.0%
! GGTGTCGTCTTGATCGGAGG+CGG - chr2_4:7738046-7738065 None:intergenic 60.0%
GACACCTTCTCCGGTTACGG+TGG + chr2_4:7738060-7738079 Msa0312580:CDS 60.0%
TTCAGCGGCGGAGTGATCGA+CGG - chr2_4:7738112-7738131 None:intergenic 60.0%
CCATCTCACCAGGTGGAGGA+AGG - chr2_4:7738281-7738300 None:intergenic 60.0%
CCTTCCTCCACCTGGTGAGA+TGG + chr2_4:7738278-7738297 Msa0312580:CDS 60.0%
GACTCCATCTCACCAGGTGG+AGG - chr2_4:7738285-7738304 None:intergenic 60.0%
TCCGACTCCATCTCACCAGG+TGG - chr2_4:7738288-7738307 None:intergenic 60.0%
ACCTGGTGAGATGGAGTCGG+AGG + chr2_4:7738287-7738306 Msa0312580:CDS 60.0%
TCCTCCGACTCCATCTCACC+AGG - chr2_4:7738291-7738310 None:intergenic 60.0%
GGTGAGATGGAGTCGGAGGA+AGG + chr2_4:7738291-7738310 Msa0312580:CDS 60.0%
ACGCTCTTCGTGAATGGCGC+CGG + chr2_4:7738316-7738335 Msa0312580:CDS 60.0%
CACGCCGAGCAACTGTCCTA+TGG + chr2_4:7740107-7740126 Msa0312580:intron 60.0%
GTTGTCCAAGGCCCTAAGCC+CGG + chr2_4:7741196-7741215 Msa0312580:CDS 60.0%
CTGTGGGTTTGCCGGGCTTA+GGG - chr2_4:7741210-7741229 None:intergenic 60.0%
TCTGTGGGTTTGCCGGGCTT+AGG - chr2_4:7741211-7741230 None:intergenic 60.0%
GGGGGAATCATGTGAGGTGG+TGG - chr2_4:7741277-7741296 None:intergenic 60.0%
GGTGGGGGAATCATGTGAGG+TGG - chr2_4:7741280-7741299 None:intergenic 60.0%
!! GGTGGTGGGGGAATCATGTG+AGG - chr2_4:7741283-7741302 None:intergenic 60.0%
! TTAGCAGGAGCAGGTGGTGG+GGG - chr2_4:7741295-7741314 None:intergenic 60.0%
TTCCTCTGCTGGGCCGTTAG+AGG - chr2_4:7741413-7741432 None:intergenic 60.0%
CGGTCGCAGAGGCTTCTTTC+TGG - chr2_4:7741438-7741457 None:intergenic 60.0%
GAAAGAAGCCTCTGCGACCG+AGG + chr2_4:7741438-7741457 Msa0312580:CDS 60.0%
TCGGAGGCGGCGAAGTTGTG+AGG - chr2_4:7738033-7738052 None:intergenic 65.0%
GGTCCGATCCTTCCTCCACC+TGG + chr2_4:7738270-7738289 Msa0312580:CDS 65.0%
GTTTGCCGGGCTTAGGGCCT+TGG - chr2_4:7741204-7741223 None:intergenic 65.0%
! AGGTTGGTCCTCGGTCGCAG+AGG - chr2_4:7741449-7741468 None:intergenic 65.0%
GGCCTCTAACGGCCCAGCAG+AGG + chr2_4:7741408-7741427 Msa0312580:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 7737870 7741864 7737870 ID=Msa0312580;Name=Msa0312580
chr2_4 mRNA 7737870 7741864 7737870 ID=Msa0312580-mRNA-1;Parent=Msa0312580;Name=Msa0312580-mRNA-1;_AED=0.02;_eAED=0.02;_QI=106|1|1|1|1|1|3|387|313
chr2_4 exon 7737870 7738337 7737870 ID=Msa0312580-mRNA-1:exon:2947;Parent=Msa0312580-mRNA-1
chr2_4 exon 7740801 7740954 7740801 ID=Msa0312580-mRNA-1:exon:2948;Parent=Msa0312580-mRNA-1
chr2_4 exon 7741052 7741864 7741052 ID=Msa0312580-mRNA-1:exon:2949;Parent=Msa0312580-mRNA-1
chr2_4 five_prime_UTR 7737870 7737975 7737870 ID=Msa0312580-mRNA-1:five_prime_utr;Parent=Msa0312580-mRNA-1
chr2_4 CDS 7737976 7738337 7737976 ID=Msa0312580-mRNA-1:cds;Parent=Msa0312580-mRNA-1
chr2_4 CDS 7740801 7740954 7740801 ID=Msa0312580-mRNA-1:cds;Parent=Msa0312580-mRNA-1
chr2_4 CDS 7741052 7741477 7741052 ID=Msa0312580-mRNA-1:cds;Parent=Msa0312580-mRNA-1
chr2_4 three_prime_UTR 7741478 7741864 7741478 ID=Msa0312580-mRNA-1:three_prime_utr;Parent=Msa0312580-mRNA-1
Gene Sequence

>Msa0312580

ATGTCTTCTTCCTTCGACGCTTTCACTGACGACTTGAACGTCAACTCATCTTCTCCTCACAACTTCGCCGCCTCCGATCAAGACGACACCTTCTCCGGTTACGGTGGTTACTCCAATTTCGACGGCGATGTCACCGTCGATCACTCCGCCGCTGAAACTACTTCACCGGAGATCTACGGATTCAGTGATCCCAATCCTGGTTACTCTCCTTCTCCGTTTGAATCGGTTACTGTAGAAAACGGGAACGATAACGGAAACGGTTATGGTGATGATGACGGTGTTTTTGTTTCTGATGGTCCGATCCTTCCTCCACCTGGTGAGATGGAGTCGGAGGAAGGTTACGCTCTTCGTGAATGGCGCCGTCAAAATGCCATTGAGCTAGAGGAGAAGGAGAAAAGGGAAAAAGAAATGCGATTGAAGATTATTGAGGAGGCTGAGGAGTATAAGGTGGCTTTCTATGAGAAAAGGAAGCTTAATGTTGAGACTAACAAGGTTCAAAATAGAGAAAGGGAGAAGTTATTCGTAGCTAATCAAGAGAAGTTTCACAAAGAGGCAGACAAAGCTTATTGGAAGACAATTGCAGAGCTCATTCCTCGTGAGGTTGCCAACATTGAAAAGAGGAGAGGCAAAAAAGATCAGGATAAGAAGCCGTCAATCACTGTTGTCCAAGGCCCTAAGCCCGGCAAACCCACAGATCTTTCCAGGATGCGACAAATACTGCTAAAGCTGAAGCATACACCACCACCTCACATGATTCCCCCACCACCTGCTCCTGCTAAAGATGCTAAAGACGCAAAGGATGGAAAAGAAACATCATCTAAAGTAACTGGGTCAGCAGCTGAAGGTGCATCAGGATCACAACCAAAGGATGTGGCCTCTAACGGCCCAGCAGAGGAACCCCAGAAAGAAGCCTCTGCGACCGAGGACCAACCTGCTGCATAA
Protein sequence

>Msa0312580

MSSSFDAFTDDLNVNSSSPHNFAASDQDDTFSGYGGYSNFDGDVTVDHSAAETTSPEIYGFSDPNPGYSPSPFESVTVENGNDNGNGYGDDDGVFVSDGPILPPPGEMESEEGYALREWRRQNAIELEEKEKREKEMRLKIIEEAEEYKVAFYEKRKLNVETNKVQNREREKLFVANQEKFHKEADKAYWKTIAELIPREVANIEKRRGKKDQDKKPSITVVQGPKPGKPTDLSRMRQILLKLKHTPPPHMIPPPPAPAKDAKDAKDGKETSSKVTGSAAEGASGSQPKDVASNGPAEEPQKEASATEDQPAA*