Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648560 | XP_003607447.1 | 59.248 | 319 | 65 | 9 | 1 | 316 | 1 | 257 | 2.27e-92 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012380 | Msa0648560 | 0.803417 | 3.520830e-49 | -8.615850e-47 |
| Msa0017130 | Msa0648560 | 0.831323 | 1.781531e-55 | -8.615850e-47 |
| Msa0030400 | Msa0648560 | 0.803176 | 3.950141e-49 | -8.615850e-47 |
| Msa0034940 | Msa0648560 | 0.804797 | 1.818140e-49 | -8.615850e-47 |
| Msa0057340 | Msa0648560 | 0.815448 | 9.197332e-52 | -8.615850e-47 |
| Msa0069540 | Msa0648560 | 0.811715 | 6.094689e-51 | -8.615850e-47 |
| Msa0081790 | Msa0648560 | 0.811500 | 6.788505e-51 | -8.615850e-47 |
| Msa0081840 | Msa0648560 | 0.801594 | 8.364973e-49 | -8.615850e-47 |
| Msa0083650 | Msa0648560 | 0.814608 | 1.412730e-51 | -8.615850e-47 |
| Msa0087130 | Msa0648560 | 0.830827 | 2.358095e-55 | -8.615850e-47 |
| Msa0608780 | Msa0648560 | 0.832846 | 7.486935e-56 | -8.615850e-47 |
| Msa0610300 | Msa0648560 | 0.816176 | 6.328964e-52 | -8.615850e-47 |
| Msa0614020 | Msa0648560 | 0.810036 | 1.407224e-50 | -8.615850e-47 |
| Msa0622250 | Msa0648560 | 0.817748 | 2.807798e-52 | -8.615850e-47 |
| Msa0625330 | Msa0648560 | 0.805401 | 1.358733e-49 | -8.615850e-47 |
| Msa0629820 | Msa0648560 | 0.804120 | 2.515574e-49 | -8.615850e-47 |
| Msa0638500 | Msa0648560 | 0.807396 | 5.158623e-50 | -8.615850e-47 |
| Msa0644220 | Msa0648560 | 0.810903 | 9.146381e-51 | -8.615850e-47 |
| Msa0644630 | Msa0648560 | 0.813876 | 2.050092e-51 | -8.615850e-47 |
| Msa0648560 | Msa0649250 | 0.808369 | 3.204483e-50 | -8.615850e-47 |
| Msa0648560 | Msa0654880 | 0.800269 | 1.560030e-48 | -8.615850e-47 |
| Msa0648560 | Msa0660070 | 0.800060 | 1.720509e-48 | -8.615850e-47 |
| Msa0648560 | Msa0685890 | 0.804641 | 1.959291e-49 | -8.615850e-47 |
| Msa0648560 | Msa0697180 | 0.808734 | 2.677794e-50 | -8.615850e-47 |
| Msa0648560 | Msa0707270 | 0.806553 | 7.780066e-50 | -8.615850e-47 |
| Msa0648560 | Msa0748330 | 0.817492 | 3.206352e-52 | -8.615850e-47 |
| Msa0648560 | Msa0766950 | 0.805476 | 1.310298e-49 | -8.615850e-47 |
| Msa0648560 | Msa0793100 | 0.814796 | 1.283833e-51 | -8.615850e-47 |
| Msa0648560 | Msa0795850 | 0.802666 | 5.035092e-49 | -8.615850e-47 |
| Msa0648560 | Msa0846070 | 0.803716 | 3.052349e-49 | -8.615850e-47 |
| Msa0648560 | Msa0876270 | 0.839201 | 1.825224e-57 | -8.615850e-47 |
| Msa0648560 | Msa0882700 | 0.800890 | 1.165584e-48 | -8.615850e-47 |
| Msa0648560 | Msa0909540 | 0.819372 | 1.202323e-52 | -8.615850e-47 |
| Msa0648560 | Msa0917630 | 0.812213 | 4.748405e-51 | -8.615850e-47 |
| Msa0648560 | Msa0928840 | 0.808953 | 2.403543e-50 | -8.615850e-47 |
| Msa0648560 | Msa1100450 | 0.802419 | 5.661123e-49 | -8.615850e-47 |
| Msa0648560 | Msa1118460 | 0.801256 | 9.808719e-49 | -8.615850e-47 |
| Msa0648560 | Msa1120660 | 0.801204 | 1.005497e-48 | -8.615850e-47 |
| Msa0648560 | Msa1177960 | 0.819794 | 9.633014e-53 | -8.615850e-47 |
| Msa0648560 | Msa1179410 | 0.816492 | 5.377936e-52 | -8.615850e-47 |
| Msa0648560 | Msa1214080 | 0.803791 | 2.945634e-49 | -8.615850e-47 |
| Msa0648560 | Msa1237750 | 0.821242 | 4.480248e-53 | -8.615850e-47 |
| Msa0648560 | Msa1244380 | 0.809835 | 1.555035e-50 | -8.615850e-47 |
| Msa0648560 | Msa1318180 | 0.825399 | 4.788086e-54 | -8.615850e-47 |
| Msa0648560 | Msa1358340 | 0.816328 | 5.851390e-52 | -8.615850e-47 |
| Msa0648560 | Msa1375780 | 0.822959 | 1.791436e-53 | -8.615850e-47 |
| Msa0648560 | Msa1386010 | -0.803861 | 2.848114e-49 | -8.615850e-47 |
| Msa0648560 | Msa1388610 | 0.817154 | 3.819688e-52 | -8.615850e-47 |
| Msa0648560 | Msa1393550 | 0.812315 | 4.508931e-51 | -8.615850e-47 |
| Msa0648560 | Msa1394900 | 0.800539 | 1.374796e-48 | -8.615850e-47 |
| Msa0648560 | Msa1400830 | 0.801264 | 9.773850e-49 | -8.615850e-47 |
| Msa0648560 | Msa1411390 | 0.800782 | 1.226321e-48 | -8.615850e-47 |
| Msa0648560 | Msa1413360 | 0.833660 | 4.694151e-56 | -8.615850e-47 |
| Msa0648560 | Msa1418780 | 0.833622 | 4.797990e-56 | -8.615850e-47 |
| Msa0648560 | Msa1426310 | 0.812453 | 4.208124e-51 | -8.615850e-47 |
| Msa0648560 | Msa1438780 | 0.808891 | 2.478067e-50 | -8.615850e-47 |
| Msa0648560 | Msa1456620 | 0.830629 | 2.636372e-55 | -8.615850e-47 |
| Msa0128070 | Msa0648560 | 0.800413 | 1.458480e-48 | -8.615850e-47 |
| Msa0130070 | Msa0648560 | 0.811160 | 8.046041e-51 | -8.615850e-47 |
| Msa0157030 | Msa0648560 | 0.820646 | 6.145574e-53 | -8.615850e-47 |
| Msa0173760 | Msa0648560 | 0.813382 | 2.632496e-51 | -8.615850e-47 |
| Msa0175670 | Msa0648560 | 0.821787 | 3.353468e-53 | -8.615850e-47 |
| Msa0199740 | Msa0648560 | 0.804987 | 1.658841e-49 | -8.615850e-47 |
| Msa0233980 | Msa0648560 | -0.816346 | 5.797718e-52 | -8.615850e-47 |
| Msa0238540 | Msa0648560 | 0.824982 | 6.007995e-54 | -8.615850e-47 |
| Msa0376480 | Msa0648560 | 0.812768 | 3.590629e-51 | -8.615850e-47 |
| Msa0392540 | Msa0648560 | 0.803912 | 2.779151e-49 | -8.615850e-47 |
| Msa0438460 | Msa0648560 | 0.800590 | 1.341874e-48 | -8.615850e-47 |
| Msa0480430 | Msa0648560 | 0.811399 | 7.139353e-51 | -8.615850e-47 |
| Msa0265440 | Msa0648560 | 0.823142 | 1.624419e-53 | -8.615850e-47 |
| Msa0272410 | Msa0648560 | -0.807411 | 5.120692e-50 | -8.615850e-47 |
| Msa0272570 | Msa0648560 | 0.801877 | 7.317465e-49 | -8.615850e-47 |
| Msa0306160 | Msa0648560 | 0.850285 | 1.874998e-60 | -8.615850e-47 |
| Msa0312580 | Msa0648560 | -0.804541 | 2.055845e-49 | -8.615850e-47 |
| Msa0346050 | Msa0648560 | 0.818196 | 2.223288e-52 | -8.615850e-47 |
| Msa0524830 | Msa0648560 | 0.818946 | 1.503497e-52 | -8.615850e-47 |
| Msa0524960 | Msa0648560 | 0.822661 | 2.102364e-53 | -8.615850e-47 |
| Msa0548210 | Msa0648560 | 0.802713 | 4.922769e-49 | -8.615850e-47 |
| Msa0556070 | Msa0648560 | 0.827746 | 1.319263e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648560 | MtrunA17_Chr4g0040021 | 59.248 | 319 | 65 | 9 | 1 | 316 | 1 | 257 | 2.09e-96 | 285 |
| Msa0648560 | MtrunA17_Chr3g0129141 | 55.294 | 85 | 35 | 1 | 83 | 164 | 67 | 151 | 1.89e-19 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648560 | AT1G08530.2 | 62.810 | 121 | 36 | 4 | 51 | 165 | 59 | 176 | 5.71e-36 | 128 |
| Msa0648560 | AT1G08530.3 | 62.500 | 120 | 36 | 4 | 51 | 164 | 59 | 175 | 8.49e-35 | 127 |
| Msa0648560 | AT1G08530.1 | 62.500 | 120 | 36 | 4 | 51 | 164 | 59 | 175 | 9.14e-35 | 127 |
| Msa0648560 | AT1G08530.1 | 63.636 | 99 | 30 | 2 | 215 | 313 | 165 | 257 | 4.88e-32 | 120 |
| Msa0648560 | AT5G09995.1 | 52.427 | 103 | 36 | 2 | 75 | 164 | 64 | 166 | 1.31e-24 | 99.4 |
| Msa0648560 | AT5G09995.3 | 52.427 | 103 | 36 | 2 | 75 | 164 | 64 | 166 | 1.95e-24 | 100 |
| Msa0648560 | AT5G09995.2 | 52.427 | 103 | 36 | 2 | 75 | 164 | 64 | 166 | 2.01e-24 | 100 |
Find 81 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTAGAATTGAGTGATTTA+AGG | 0.180421 | 4_3:-55042326 | Msa0648560:intron |
| GTTAAGCTTAGGAGAATTAA+AGG | 0.197857 | 4_3:+55044540 | None:intergenic |
| ATCTTCGGTTATAATGTAAA+AGG | 0.217382 | 4_3:-55038654 | Msa0648560:three_prime_UTR |
| TATGGAATTCATGGTGAATT+AGG | 0.224410 | 4_3:+55044792 | None:intergenic |
| ATGGCTGCTATGAGGCTTTC+AGG | 0.233469 | 4_3:-55042369 | Msa0648560:CDS |
| AACAGGTTGCAGAGATATTT+CGG | 0.239317 | 4_3:+55038907 | None:intergenic |
| ATACCTTCCCACACTATATT+AGG | 0.247154 | 4_3:+55038702 | None:intergenic |
| ATTTCATCTTGTTCCTCTAA+TGG | 0.255078 | 4_3:-55044643 | Msa0648560:CDS |
| AGCTTGATGAACATGATTTC+AGG | 0.284276 | 4_3:-55038833 | Msa0648560:CDS |
| TAGAAGAGATGAAGAGAAAA+TGG | 0.289595 | 4_3:+55044686 | None:intergenic |
| ATGCCTTTCGGATGTATTAT+TGG | 0.295794 | 4_3:-55040634 | Msa0648560:CDS |
| ATACAGATACGGAAATAAAA+TGG | 0.302157 | 4_3:-55040593 | Msa0648560:CDS |
| TCCGAAAGGCATCCGGATTC+CGG | 0.302918 | 4_3:+55040645 | None:intergenic |
| AGGAACAAGATGAAATGAAT+TGG | 0.324863 | 4_3:+55044650 | None:intergenic |
| GCTTTGCAAGCAGCAGAAAC+TGG | 0.326443 | 4_3:-55040260 | Msa0648560:CDS |
| AACTTCATCTGAAGAATTGC+TGG | 0.335169 | 4_3:+55044618 | None:intergenic |
| ACAGGTTGCAGAGATATTTC+GGG | 0.348410 | 4_3:+55038908 | None:intergenic |
| GGAACAAGATGAAATGAATT+GGG | 0.353492 | 4_3:+55044651 | None:intergenic |
| TCCGGAATCCGGATGCCTTT+CGG | 0.362154 | 4_3:-55040646 | Msa0648560:CDS |
| CATCAGAGATTTAGCCCTTA+AGG | 0.374911 | 4_3:-55040559 | Msa0648560:CDS |
| TGGCAAAATTTGAATATCTT+CGG | 0.379687 | 4_3:-55038669 | Msa0648560:three_prime_UTR |
| TCTCTGCAACCTGTTGTTGT+AGG | 0.395694 | 4_3:-55038899 | Msa0648560:CDS |
| AGAAGATATAATCTTCCTTA+AGG | 0.411280 | 4_3:+55040544 | None:intergenic |
| CTTGCAGCTCCTACAACAAC+AGG | 0.413263 | 4_3:+55038890 | None:intergenic |
| ACGTAATGAAGAAGTGAGTA+TGG | 0.421039 | 4_3:+55044774 | None:intergenic |
| GTATCGTATCGGTGCATCAT+AGG | 0.425955 | 4_3:+55041661 | None:intergenic |
| AGAATTGCTGGATCCATTAG+AGG | 0.430075 | 4_3:+55044630 | None:intergenic |
| AAACAGATGCATCCGGAATC+CGG | 0.432584 | 4_3:-55040657 | Msa0648560:intron |
| GAAGATATAATCTTCCTTAA+GGG | 0.444902 | 4_3:+55040545 | None:intergenic |
| AAGTTCCTCACGAGCTGTAT+CGG | 0.448420 | 4_3:+55042401 | None:intergenic |
| TGATAGAAAACTTACAAATA+GGG | 0.448957 | 4_3:+55043508 | None:intergenic |
| TCAGCTGAAACGAGTTAAAT+CGG | 0.459031 | 4_3:-55044841 | Msa0648560:five_prime_UTR |
| TCATCAAGCTCTTTGTTGCT+CGG | 0.460624 | 4_3:+55038846 | None:intergenic |
| TGGCTGCTATGAGGCTTTCA+GGG | 0.478870 | 4_3:-55042368 | Msa0648560:CDS |
| CAGACTTCAGTGGCATTCAC+TGG | 0.482597 | 4_3:-55043554 | Msa0648560:CDS |
| GAAACTGGAATTCGACATAT+CGG | 0.482730 | 4_3:-55040245 | Msa0648560:CDS |
| GTGTCTTAATACTGTGAGAA+TGG | 0.494934 | 4_3:-55038614 | Msa0648560:three_prime_UTR |
| AGAAGTGAGTATGGAATTCA+TGG | 0.496109 | 4_3:+55044783 | None:intergenic |
| TCTCGCATTCATTGCTTGCA+CGG | 0.504199 | 4_3:-55044494 | Msa0648560:intron |
| TCTTCGGTTATAATGTAAAA+GGG | 0.506338 | 4_3:-55038653 | Msa0648560:three_prime_UTR |
| TGGTCACTGAAGTTAAGCTT+AGG | 0.506859 | 4_3:+55044529 | None:intergenic |
| ATTCGCTCTCTCTTCAATCA+TGG | 0.506919 | 4_3:+55038934 | None:intergenic |
| TAATACATCCGAAAGGCATC+CGG | 0.508874 | 4_3:+55040638 | None:intergenic |
| CTCATAGCAGCCATGGTGCT+CGG | 0.513430 | 4_3:+55042378 | None:intergenic |
| TATGAACGAGATAGAGTTGG+AGG | 0.513895 | 4_3:-55044945 | Msa0648560:five_prime_UTR |
| TTGTTGTAGTTGAAGTGTGT+GGG | 0.518011 | 4_3:+55044746 | None:intergenic |
| TTTGAGTATAAGTGACCTAC+AGG | 0.521836 | 4_3:-55038566 | Msa0648560:three_prime_UTR |
| TGCTATGAGGCTTTCAGGGA+TGG | 0.535004 | 4_3:-55042364 | Msa0648560:CDS |
| TGATATGAACGAGATAGAGT+TGG | 0.543304 | 4_3:-55044948 | Msa0648560:five_prime_UTR |
| GAATTAAAGGAAGGAACTTG+AGG | 0.544279 | 4_3:+55044553 | None:intergenic |
| GATGAACATGATTTCAGGAA+GGG | 0.554707 | 4_3:-55038828 | Msa0648560:CDS |
| CGAGCACCATGGCTGCTATG+AGG | 0.556860 | 4_3:-55042377 | Msa0648560:CDS |
| CGTATCTGTATCGGATACGT+TGG | 0.560319 | 4_3:+55040605 | None:intergenic |
| AGAAAGACTTCTAGAGCAGT+TGG | 0.562509 | 4_3:-55038869 | Msa0648560:CDS |
| ATGCGAGAAGAAAGAAAGCT+TGG | 0.567862 | 4_3:+55044509 | None:intergenic |
| GTATCTGTATCGGATACGTT+GGG | 0.568110 | 4_3:+55040606 | None:intergenic |
| ACTAGATTACAATGAGAAGA+GGG | 0.575460 | 4_3:+55038521 | None:intergenic |
| GGGAAGGTATTGAAAAGTAA+TGG | 0.576809 | 4_3:-55038689 | Msa0648560:three_prime_UTR |
| CAACGTATCCGATACAGATA+CGG | 0.578421 | 4_3:-55040604 | Msa0648560:CDS |
| TACTAGATTACAATGAGAAG+AGG | 0.581229 | 4_3:+55038520 | None:intergenic |
| GAACAAGATGAAATGAATTG+GGG | 0.586685 | 4_3:+55044652 | None:intergenic |
| GTTGTTGTAGTTGAAGTGTG+TGG | 0.588018 | 4_3:+55044745 | None:intergenic |
| ATTGTCTCTGCAGACTTCAG+TGG | 0.589317 | 4_3:-55043564 | Msa0648560:intron |
| CACCGATACGATACGAGTAT+CGG | 0.591610 | 4_3:-55041652 | Msa0648560:CDS |
| TAGAAAACTTACAAATAGGG+TGG | 0.592421 | 4_3:+55043511 | None:intergenic |
| AGCTTAGGAGAATTAAAGGA+AGG | 0.592909 | 4_3:+55044544 | None:intergenic |
| TGAAAGCCTCATAGCAGCCA+TGG | 0.594421 | 4_3:+55042371 | None:intergenic |
| ACTTACAAATAGGGTGGGAA+CGG | 0.604684 | 4_3:+55043517 | None:intergenic |
| TGATGAACATGATTTCAGGA+AGG | 0.611868 | 4_3:-55038829 | Msa0648560:CDS |
| AGAAAACTTACAAATAGGGT+GGG | 0.618122 | 4_3:+55043512 | None:intergenic |
| ATTAGCCAGGAAATAACAGA+AGG | 0.629328 | 4_3:-55040302 | Msa0648560:intron |
| AATGTGTCCTAATATAGTGT+GGG | 0.630740 | 4_3:-55038709 | Msa0648560:three_prime_UTR |
| GCTAGCCGATACAGCTCGTG+AGG | 0.632890 | 4_3:-55042406 | Msa0648560:CDS |
| ATCCGATACTCGTATCGTAT+CGG | 0.633264 | 4_3:+55041650 | None:intergenic |
| AATTCGACATATCGGTTCAG+TGG | 0.637592 | 4_3:-55040237 | Msa0648560:CDS |
| TGTCCTAATATAGTGTGGGA+AGG | 0.637749 | 4_3:-55038705 | Msa0648560:three_prime_UTR |
| TAATGTGTCCTAATATAGTG+TGG | 0.644069 | 4_3:-55038710 | Msa0648560:three_prime_UTR |
| TGAGGAACTTCCGAGCACCA+TGG | 0.663337 | 4_3:-55042388 | Msa0648560:CDS |
| GCTACATAAAAGAAGTGCAG+TGG | 0.664730 | 4_3:-55038592 | Msa0648560:three_prime_UTR |
| ATGCCAATAATACATCCGAA+AGG | 0.674496 | 4_3:+55040631 | None:intergenic |
| GTATCGGATACATCGATATG+CGG | 0.751620 | 4_3:-55041636 | Msa0648560:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAGAGTATGAAAATT+AGG | + | chr4_3:55039213-55039232 | None:intergenic | 15.0% |
| !! | AATATTACAAATGATAAAAG+AGG | + | chr4_3:55040088-55040107 | None:intergenic | 15.0% |
| !! | TGCTATTAAAGAAAATAAAT+GGG | + | chr4_3:55040704-55040723 | None:intergenic | 15.0% |
| !! | ATGCTATTAAAGAAAATAAA+TGG | + | chr4_3:55040705-55040724 | None:intergenic | 15.0% |
| !! | TAATAGCATCATAAAATTAT+TGG | - | chr4_3:55040716-55040735 | Msa0648560:intron | 15.0% |
| !! | AGAACTATTAAAATTAAGTA+AGG | + | chr4_3:55041927-55041946 | None:intergenic | 15.0% |
| !! | AATTAAACAAATTTGAATTG+AGG | + | chr4_3:55041992-55042011 | None:intergenic | 15.0% |
| !! | AAGATAAAATTAACAAAATC+TGG | + | chr4_3:55042118-55042137 | None:intergenic | 15.0% |
| !!! | TAGAAGTAATTTTTTTTTGT+AGG | - | chr4_3:55042305-55042324 | Msa0648560:intron | 15.0% |
| !!! | AGAAGTAATTTTTTTTTGTA+GGG | - | chr4_3:55042306-55042325 | Msa0648560:intron | 15.0% |
| !! | AAACCTATTAAAATTAAGTA+AGG | - | chr4_3:55042335-55042354 | Msa0648560:CDS | 15.0% |
| !!! | AATAAAACTTTAAAAGAAGA+AGG | - | chr4_3:55042514-55042533 | Msa0648560:intron | 15.0% |
| !! | AAACAAAAAGCAAAAAATTA+CGG | + | chr4_3:55042720-55042739 | None:intergenic | 15.0% |
| !! | TAAGCTATTTATATAACAAA+AGG | - | chr4_3:55043310-55043329 | Msa0648560:intron | 15.0% |
| !! | TCATGATCTTAAAAATTATT+GGG | + | chr4_3:55044944-55044963 | None:intergenic | 15.0% |
| !! | ATCATGATCTTAAAAATTAT+TGG | + | chr4_3:55044945-55044964 | None:intergenic | 15.0% |
| !!! | TTTCATACTCTTTTTTACTT+AGG | - | chr4_3:55039216-55039235 | Msa0648560:intron | 20.0% |
| !! | CAAATAGAAAGATAAATTCA+AGG | + | chr4_3:55039773-55039792 | None:intergenic | 20.0% |
| !! | TGATAGAAAACTTACAAATA+GGG | + | chr4_3:55039894-55039913 | None:intergenic | 20.0% |
| !!! | TAGTTTTGTTAGTTTTATGT+TGG | - | chr4_3:55040227-55040246 | Msa0648560:CDS | 20.0% |
| !!! | AGTTTTGTTAGTTTTATGTT+GGG | - | chr4_3:55040228-55040247 | Msa0648560:CDS | 20.0% |
| !!! | CCAAGAAAAAATATTTTGTT+TGG | + | chr4_3:55040341-55040360 | None:intergenic | 20.0% |
| !!! | CCAAACAAAATATTTTTTCT+TGG | - | chr4_3:55040338-55040357 | Msa0648560:intron | 20.0% |
| !!! | AACAAAATATTTTTTCTTGG+AGG | - | chr4_3:55040341-55040360 | Msa0648560:intron | 20.0% |
| !!! | ACAAAATATTTTTTCTTGGA+GGG | - | chr4_3:55040342-55040361 | Msa0648560:intron | 20.0% |
| !! | TTTCTTCATTTAGCAATTAT+TGG | - | chr4_3:55040766-55040785 | Msa0648560:intron | 20.0% |
| !! | ATCCTCATATTTATCTTATT+AGG | - | chr4_3:55040866-55040885 | Msa0648560:intron | 20.0% |
| !! | AACCTAATAAGATAAATATG+AGG | + | chr4_3:55040871-55040890 | None:intergenic | 20.0% |
| !! | TCATATAGAAATATGTAACA+GGG | + | chr4_3:55041149-55041168 | None:intergenic | 20.0% |
| !! | ATCATATAGAAATATGTAAC+AGG | + | chr4_3:55041150-55041169 | None:intergenic | 20.0% |
| !!! | TGTTACATATTTCTATATGA+TGG | - | chr4_3:55041149-55041168 | Msa0648560:intron | 20.0% |
| !! | AAGGATATAAGGATTTAAAT+TGG | - | chr4_3:55041587-55041606 | Msa0648560:intron | 20.0% |
| !!! | TTATGAGATTTTTTCTTTCA+AGG | - | chr4_3:55041679-55041698 | Msa0648560:intron | 20.0% |
| !! | TACCAGTTAAGATAAAATAA+AGG | - | chr4_3:55041852-55041871 | Msa0648560:intron | 20.0% |
| !! | ACCAGTTAAGATAAAATAAA+GGG | - | chr4_3:55041853-55041872 | Msa0648560:intron | 20.0% |
| !!! | TAAAAGGTCTCAATTTTATA+GGG | + | chr4_3:55041896-55041915 | None:intergenic | 20.0% |
| !!! | TTAAAAGGTCTCAATTTTAT+AGG | + | chr4_3:55041897-55041916 | None:intergenic | 20.0% |
| !!! | AGTCCTTACTTAATTTTAAT+AGG | + | chr4_3:55041921-55041940 | None:intergenic | 20.0% |
| !!! | TTAGAAGTTTCCAATTTTAT+AGG | - | chr4_3:55042365-55042384 | Msa0648560:CDS | 20.0% |
| !!! | TAGAAGTTTCCAATTTTATA+GGG | - | chr4_3:55042366-55042385 | Msa0648560:CDS | 20.0% |
| !!! | TTTAGGGTTAAATATGTTTT+TGG | + | chr4_3:55042393-55042412 | None:intergenic | 20.0% |
| !! | TATTGAAAAATTAGTTAGAG+AGG | - | chr4_3:55042420-55042439 | Msa0648560:CDS | 20.0% |
| !! | ATTGAAAAATTAGTTAGAGA+GGG | - | chr4_3:55042421-55042440 | Msa0648560:CDS | 20.0% |
| !!! | ACTTTGAAATTTTAATCACA+TGG | - | chr4_3:55042966-55042985 | Msa0648560:intron | 20.0% |
| !! | AAAAATAATTCCCGATAAAA+AGG | + | chr4_3:55043014-55043033 | None:intergenic | 20.0% |
| !! | TTAAATTGTTTATGCAAACA+GGG | + | chr4_3:55043244-55043263 | None:intergenic | 20.0% |
| !! | ATTAAATTGTTTATGCAAAC+AGG | + | chr4_3:55043245-55043264 | None:intergenic | 20.0% |
| !! | GAATAAATCAAATAATTCCA+AGG | + | chr4_3:55043574-55043593 | None:intergenic | 20.0% |
| !!! | TATTTGATTTATTCCTTTAG+TGG | - | chr4_3:55043580-55043599 | Msa0648560:intron | 20.0% |
| !!! | ATTTGATTTATTCCTTTAGT+GGG | - | chr4_3:55043581-55043600 | Msa0648560:intron | 20.0% |
| !! | TTTATTTATCATGTTTCTTC+CGG | - | chr4_3:55043883-55043902 | Msa0648560:intron | 20.0% |
| !! | AGAAAATGAATTTATTGATG+TGG | + | chr4_3:55044037-55044056 | None:intergenic | 20.0% |
| !!! | GTTCAATTTTTAGCATTAAA+TGG | + | chr4_3:55044098-55044117 | None:intergenic | 20.0% |
| !! | AAGAAATAGATATCTAGTAT+TGG | - | chr4_3:55044146-55044165 | Msa0648560:intron | 20.0% |
| !! | CATGATCTTAAAAATTATTG+GGG | + | chr4_3:55044943-55044962 | None:intergenic | 20.0% |
| !! | ATGCAAAATCTTTTGTGTTT+AGG | - | chr4_3:55038929-55038948 | Msa0648560:CDS | 25.0% |
| !! | ATATTTTCCTAAGCTACAAT+AGG | + | chr4_3:55039058-55039077 | None:intergenic | 25.0% |
| ! | TAGCTAATAAAGTAACAACT+TGG | - | chr4_3:55039128-55039147 | Msa0648560:intron | 25.0% |
| !! | TATGAAAATTAGGTTGTGTT+TGG | + | chr4_3:55039203-55039222 | None:intergenic | 25.0% |
| ! | AAATAGTGAATATGTGATAG+CGG | - | chr4_3:55039257-55039276 | Msa0648560:intron | 25.0% |
| ! | CTAATTGAAATTGTAGTGTT+TGG | - | chr4_3:55039289-55039308 | Msa0648560:intron | 25.0% |
| !!! | GTTTTTCAATTAAGATTGCA+TGG | - | chr4_3:55039384-55039403 | Msa0648560:intron | 25.0% |
| !! | TTATCTTTACTAGCTTATAG+CGG | + | chr4_3:55039488-55039507 | None:intergenic | 25.0% |
| ! | GTGATAGAAAACTTACAAAT+AGG | + | chr4_3:55039895-55039914 | None:intergenic | 25.0% |
| ! | AAGTCAGATAAAAGATAAGT+AGG | + | chr4_3:55040058-55040077 | None:intergenic | 25.0% |
| !!! | GAATATGCGTTTTGATATAA+AGG | - | chr4_3:55040149-55040168 | Msa0648560:intron | 25.0% |
| !! | TTTTGATATAAAGGAATGCA+AGG | - | chr4_3:55040158-55040177 | Msa0648560:intron | 25.0% |
| !!! | GTTTTGTTAGTTTTATGTTG+GGG | - | chr4_3:55040229-55040248 | Msa0648560:CDS | 25.0% |
| !!! | TTTTGTTAGTTTTATGTTGG+GGG | - | chr4_3:55040230-55040249 | Msa0648560:CDS | 25.0% |
| ! | TTTAAATAACTTTGCCTAAG+AGG | - | chr4_3:55040375-55040394 | Msa0648560:intron | 25.0% |
| ! | TAAAATTGAAAATGACTGAG+CGG | + | chr4_3:55040491-55040510 | None:intergenic | 25.0% |
| ! | ATTCTATACGAATTTGAACT+TGG | - | chr4_3:55040659-55040678 | Msa0648560:intron | 25.0% |
| ! | AGCATCATAAAATTATTGGT+TGG | - | chr4_3:55040720-55040739 | Msa0648560:intron | 25.0% |
| !! | TCATTTAGCAATTATTGGTT+AGG | - | chr4_3:55040771-55040790 | Msa0648560:intron | 25.0% |
| !! | TCATTTAGCATTATGTTTTC+AGG | - | chr4_3:55040824-55040843 | Msa0648560:intron | 25.0% |
| !! | TGAATATCTAGAGTTTGTTT+AGG | + | chr4_3:55040904-55040923 | None:intergenic | 25.0% |
| !! | TACTTTTACATATCTTCCTT+AGG | - | chr4_3:55040939-55040958 | Msa0648560:intron | 25.0% |
| !!! | TTCTGTTTAGTATTTGCTAT+TGG | - | chr4_3:55041202-55041221 | Msa0648560:intron | 25.0% |
| !!! | GTATTTGCTATTGGTAATAT+TGG | - | chr4_3:55041211-55041230 | Msa0648560:intron | 25.0% |
| ! | TATTGATGTTCAGTAAGAAT+GGG | + | chr4_3:55041279-55041298 | None:intergenic | 25.0% |
| ! | TTATTGATGTTCAGTAAGAA+TGG | + | chr4_3:55041280-55041299 | None:intergenic | 25.0% |
| !!! | GCTTACTTTTTAGTTTTCTT+TGG | - | chr4_3:55041415-55041434 | Msa0648560:intron | 25.0% |
| ! | CATAAAATTGTTCAAATCAC+TGG | + | chr4_3:55041529-55041548 | None:intergenic | 25.0% |
| ! | ATATAAGGATTTAAATTGGC+AGG | - | chr4_3:55041591-55041610 | Msa0648560:intron | 25.0% |
| ! | TATAAGGATTTAAATTGGCA+GGG | - | chr4_3:55041592-55041611 | Msa0648560:intron | 25.0% |
| ! | TTCCTGCAAATTTAAGAAAA+GGG | + | chr4_3:55041713-55041732 | None:intergenic | 25.0% |
| ! | ATTCCTGCAAATTTAAGAAA+AGG | + | chr4_3:55041714-55041733 | None:intergenic | 25.0% |
| !!! | ACCCTTTATTTTATCTTAAC+TGG | + | chr4_3:55041857-55041876 | None:intergenic | 25.0% |
| !! | TAAAGGGTTAGATATGTTTT+TGG | - | chr4_3:55041869-55041888 | Msa0648560:intron | 25.0% |
| ! | AAGTAAGGACTAAACTTAAA+AGG | + | chr4_3:55041912-55041931 | None:intergenic | 25.0% |
| ! | AAACAAATTTGAATTGAGGA+GGG | + | chr4_3:55041988-55042007 | None:intergenic | 25.0% |
| ! | TAAACAAATTTGAATTGAGG+AGG | + | chr4_3:55041989-55042008 | None:intergenic | 25.0% |
| ! | TCGTTCAAAAATTTAAGAGT+TGG | - | chr4_3:55042245-55042264 | Msa0648560:intron | 25.0% |
| !!! | TTAAACAAGCTTTGTTGTAT+CGG | - | chr4_3:55042272-55042291 | Msa0648560:intron | 25.0% |
| ! | TTTGTATGTATATTCTTCAC+TGG | + | chr4_3:55042461-55042480 | None:intergenic | 25.0% |
| ! | GTGTAAAAATCTAATCACAA+AGG | - | chr4_3:55042574-55042593 | Msa0648560:intron | 25.0% |
| !!! | TTTTATTTCCGTATCTGTAT+CGG | + | chr4_3:55042806-55042825 | None:intergenic | 25.0% |
| ! | ATACAGATACGGAAATAAAA+TGG | - | chr4_3:55042806-55042825 | Msa0648560:intron | 25.0% |
| ! | GAAGATATAATCTTCCTTAA+GGG | + | chr4_3:55042857-55042876 | None:intergenic | 25.0% |
| ! | AGAAGATATAATCTTCCTTA+AGG | + | chr4_3:55042858-55042877 | None:intergenic | 25.0% |
| ! | TTTGTCTAGTGTAATTCTAT+TGG | + | chr4_3:55042921-55042940 | None:intergenic | 25.0% |
| !! | GAAAAAAGATGCCTTTTTAT+CGG | - | chr4_3:55043000-55043019 | Msa0648560:intron | 25.0% |
| !! | AAAAAAGATGCCTTTTTATC+GGG | - | chr4_3:55043001-55043020 | Msa0648560:intron | 25.0% |
| !!! | TGTTTGGATTAGTTTATTTG+AGG | + | chr4_3:55043486-55043505 | None:intergenic | 25.0% |
| ! | ATAGAAGTAAAGAAATAGCT+AGG | - | chr4_3:55043543-55043562 | Msa0648560:CDS | 25.0% |
| ! | TAGAAGTAAAGAAATAGCTA+GGG | - | chr4_3:55043544-55043563 | Msa0648560:CDS | 25.0% |
| !!! | TCTGTCTTCATATTTTTTGA+AGG | - | chr4_3:55043613-55043632 | Msa0648560:intron | 25.0% |
| !!! | GTTCAGTTTTCATTTTTTGA+AGG | - | chr4_3:55043764-55043783 | Msa0648560:intron | 25.0% |
| ! | TTATTTATCATGTTTCTTCC+GGG | - | chr4_3:55043884-55043903 | Msa0648560:intron | 25.0% |
| ! | TGAAATATGATACACATATC+AGG | + | chr4_3:55043930-55043949 | None:intergenic | 25.0% |
| !!! | TCTTCATTAACCATTGATTT+GGG | - | chr4_3:55044171-55044190 | Msa0648560:intron | 25.0% |
| ! | TGGCAAAATTTGAATATCTT+CGG | - | chr4_3:55044730-55044749 | Msa0648560:CDS | 25.0% |
| ! | ATCTTCGGTTATAATGTAAA+AGG | - | chr4_3:55044745-55044764 | Msa0648560:CDS | 25.0% |
| ! | TCTTCGGTTATAATGTAAAA+GGG | - | chr4_3:55044746-55044765 | Msa0648560:CDS | 25.0% |
| TATGGAATTCATGGTGAATT+AGG | + | chr4_3:55038610-55038629 | None:intergenic | 30.0% | |
| TAGAAGAGATGAAGAGAAAA+TGG | + | chr4_3:55038716-55038735 | None:intergenic | 30.0% | |
| GAACAAGATGAAATGAATTG+GGG | + | chr4_3:55038750-55038769 | None:intergenic | 30.0% | |
| GGAACAAGATGAAATGAATT+GGG | + | chr4_3:55038751-55038770 | None:intergenic | 30.0% | |
| AGGAACAAGATGAAATGAAT+TGG | + | chr4_3:55038752-55038771 | None:intergenic | 30.0% | |
| ATTTCATCTTGTTCCTCTAA+TGG | - | chr4_3:55038756-55038775 | Msa0648560:three_prime_UTR | 30.0% | |
| GTTAAGCTTAGGAGAATTAA+AGG | + | chr4_3:55038862-55038881 | None:intergenic | 30.0% | |
| ATAAACTCCTATTGTAGCTT+AGG | - | chr4_3:55039048-55039067 | Msa0648560:intron | 30.0% | |
| GTAGTGTTTGGTAAAATTAG+CGG | - | chr4_3:55039301-55039320 | Msa0648560:intron | 30.0% | |
| ATTTGACTAAAAGCTCTGTT+TGG | + | chr4_3:55039539-55039558 | None:intergenic | 30.0% | |
| AGAAAACTTACAAATAGGGT+GGG | + | chr4_3:55039890-55039909 | None:intergenic | 30.0% | |
| TAGAAAACTTACAAATAGGG+TGG | + | chr4_3:55039891-55039910 | None:intergenic | 30.0% | |
| !! | TTTATAGCTTTGTGACGTAT+TGG | - | chr4_3:55040002-55040021 | Msa0648560:intron | 30.0% |
| ! | CAAAACGCATATTCAACTTT+TGG | + | chr4_3:55040143-55040162 | None:intergenic | 30.0% |
| ACTAAATAGGATGAAGACAA+GGG | + | chr4_3:55040310-55040329 | None:intergenic | 30.0% | |
| TACTAAATAGGATGAAGACA+AGG | + | chr4_3:55040311-55040330 | None:intergenic | 30.0% | |
| TTTGGACAGATGTACTAAAT+AGG | + | chr4_3:55040323-55040342 | None:intergenic | 30.0% | |
| GTGATATATGTCTCAAAAAG+AGG | + | chr4_3:55040527-55040546 | None:intergenic | 30.0% | |
| !! | ATAAATGGGTATAGCCTTAT+AGG | + | chr4_3:55040690-55040709 | None:intergenic | 30.0% |
| CACTAGAATTGAGTGATTTA+AGG | - | chr4_3:55041073-55041092 | Msa0648560:intron | 30.0% | |
| TGTGGTTTCTTGTAAAACTA+TGG | + | chr4_3:55041251-55041270 | None:intergenic | 30.0% | |
| GAACATCAATAAAACAGAAG+TGG | - | chr4_3:55041288-55041307 | Msa0648560:intron | 30.0% | |
| TACTTGCATGTGTATCAAAA+TGG | - | chr4_3:55041322-55041341 | Msa0648560:intron | 30.0% | |
| !!! | TCTAGTTCTGTGCTTTTTAT+TGG | - | chr4_3:55041357-55041376 | Msa0648560:intron | 30.0% |
| ! | CTAGAATTTAGAAGCATGTA+TGG | + | chr4_3:55041452-55041471 | None:intergenic | 30.0% |
| AACAGATAGACAAGGATATA+AGG | - | chr4_3:55041576-55041595 | Msa0648560:intron | 30.0% | |
| ! | TTCCCTTTTCTTAAATTTGC+AGG | - | chr4_3:55041708-55041727 | Msa0648560:intron | 30.0% |
| ! | ATCGTGTCCTATATTTTCTA+AGG | + | chr4_3:55041791-55041810 | None:intergenic | 30.0% |
| GAGTGCAGGAAAAAAATTTA+GGG | + | chr4_3:55041956-55041975 | None:intergenic | 30.0% | |
| TGAGTGCAGGAAAAAAATTT+AGG | + | chr4_3:55041957-55041976 | None:intergenic | 30.0% | |
| !!! | TTTACGACAATTTTTTGCAG+AGG | + | chr4_3:55042080-55042099 | None:intergenic | 30.0% |
| !! | TAAACAAGCTTTGTTGTATC+GGG | - | chr4_3:55042273-55042292 | Msa0648560:intron | 30.0% |
| !!! | GTTTTTGGTCCCTATAAAAT+TGG | + | chr4_3:55041884-55041903 | None:intergenic | 30.0% |
| TCTATCCACATTGCATATAT+GGG | - | chr4_3:55043046-55043065 | Msa0648560:intron | 30.0% | |
| ATTTACCCATATATGCAATG+TGG | + | chr4_3:55043054-55043073 | None:intergenic | 30.0% | |
| TTATTGTTTGACAATTAGCC+AGG | - | chr4_3:55043084-55043103 | Msa0648560:intron | 30.0% | |
| !!! | AGCTTTTTCATAAGCTATCT+TGG | - | chr4_3:55043369-55043388 | Msa0648560:intron | 30.0% |
| GATTTCTCTTAGAAGTCAAT+TGG | - | chr4_3:55043638-55043657 | Msa0648560:intron | 30.0% | |
| GATTTCTGTTAGAACTCAAT+TGG | - | chr4_3:55043789-55043808 | Msa0648560:intron | 30.0% | |
| AGAATCTGTTAAAATGTTCC+CGG | + | chr4_3:55043905-55043924 | None:intergenic | 30.0% | |
| ! | GTCTTCATTAACCATTGATT+TGG | - | chr4_3:55044170-55044189 | Msa0648560:intron | 30.0% |
| CAACTCTAGTATATGTTGTA+GGG | + | chr4_3:55044232-55044251 | None:intergenic | 30.0% | |
| ACAACTCTAGTATATGTTGT+AGG | + | chr4_3:55044233-55044252 | None:intergenic | 30.0% | |
| ACAACATATACTAGAGTTGT+TGG | - | chr4_3:55044233-55044252 | Msa0648560:intron | 30.0% | |
| !! | GTTAAAATCTCGTTTTTAGG+AGG | + | chr4_3:55044286-55044305 | None:intergenic | 30.0% |
| !! | GTGGTTAAAATCTCGTTTTT+AGG | + | chr4_3:55044289-55044308 | None:intergenic | 30.0% |
| GTCATTAGATATTCATCCAA+CGG | - | chr4_3:55044324-55044343 | Msa0648560:intron | 30.0% | |
| TAATGTGTCCTAATATAGTG+TGG | - | chr4_3:55044689-55044708 | Msa0648560:CDS | 30.0% | |
| AATGTGTCCTAATATAGTGT+GGG | - | chr4_3:55044690-55044709 | Msa0648560:CDS | 30.0% | |
| ACTAGATTACAATGAGAAGA+GGG | + | chr4_3:55044881-55044900 | None:intergenic | 30.0% | |
| TACTAGATTACAATGAGAAG+AGG | + | chr4_3:55044882-55044901 | None:intergenic | 30.0% | |
| TGATATGAACGAGATAGAGT+TGG | - | chr4_3:55038451-55038470 | Msa0648560:three_prime_UTR | 35.0% | |
| TCAGCTGAAACGAGTTAAAT+CGG | - | chr4_3:55038558-55038577 | Msa0648560:three_prime_UTR | 35.0% | |
| AGAAGTGAGTATGGAATTCA+TGG | + | chr4_3:55038619-55038638 | None:intergenic | 35.0% | |
| ACGTAATGAAGAAGTGAGTA+TGG | + | chr4_3:55038628-55038647 | None:intergenic | 35.0% | |
| TTGTTGTAGTTGAAGTGTGT+GGG | + | chr4_3:55038656-55038675 | None:intergenic | 35.0% | |
| AACTTCATCTGAAGAATTGC+TGG | + | chr4_3:55038784-55038803 | None:intergenic | 35.0% | |
| GAATTAAAGGAAGGAACTTG+AGG | + | chr4_3:55038849-55038868 | None:intergenic | 35.0% | |
| AGCTTAGGAGAATTAAAGGA+AGG | + | chr4_3:55038858-55038877 | None:intergenic | 35.0% | |
| AGCTTATAGCTTAAAGCTCA+TGG | + | chr4_3:55039436-55039455 | None:intergenic | 35.0% | |
| ! | ACTTTTGGCAGTTTATTTGC+AGG | + | chr4_3:55040128-55040147 | None:intergenic | 35.0% |
| AGTGAGTTAAACACTGAGAA+AGG | - | chr4_3:55040410-55040429 | Msa0648560:intron | 35.0% | |
| GTGAGTTAAACACTGAGAAA+GGG | - | chr4_3:55040411-55040430 | Msa0648560:intron | 35.0% | |
| !! | ACAATTTAGAGAAGAGTGCT+AGG | - | chr4_3:55040459-55040478 | Msa0648560:intron | 35.0% |
| AGTGTCAAATATCCTGTATG+CGG | - | chr4_3:55040572-55040591 | Msa0648560:CDS | 35.0% | |
| TGAACTTGGCTATTCCTATA+AGG | - | chr4_3:55040673-55040692 | Msa0648560:intron | 35.0% | |
| !! | TGTGCTTTTTATTGGTTGCT+GGG | - | chr4_3:55041365-55041384 | Msa0648560:intron | 35.0% |
| ! | TTAGAAGCATGTATGGTCAA+CGG | + | chr4_3:55041445-55041464 | None:intergenic | 35.0% |
| !! | TCACTGGCATTTTAGTACTA+TGG | + | chr4_3:55041513-55041532 | None:intergenic | 35.0% |
| TGTCTAGAAACAGATAGACA+AGG | - | chr4_3:55041568-55041587 | Msa0648560:intron | 35.0% | |
| ATTGTGTTAAAGTATGAGCC+AGG | - | chr4_3:55041628-55041647 | Msa0648560:intron | 35.0% | |
| TTGTGTTAAAGTATGAGCCA+GGG | - | chr4_3:55041629-55041648 | Msa0648560:intron | 35.0% | |
| TGCGGTTCCTTAGAAAATAT+AGG | - | chr4_3:55041781-55041800 | Msa0648560:intron | 35.0% | |
| ! | CACGTTTAGAACACTATGAA+AGG | + | chr4_3:55042214-55042233 | None:intergenic | 35.0% |
| !! | AAACAAGCTTTGTTGTATCG+GGG | - | chr4_3:55042274-55042293 | Msa0648560:intron | 35.0% |
| TCGAGACATTGGAAATATAG+AGG | - | chr4_3:55042540-55042559 | Msa0648560:intron | 35.0% | |
| GACATTGGAAATATAGAGGT+TGG | - | chr4_3:55042544-55042563 | Msa0648560:intron | 35.0% | |
| AAATCTAATCACAAAGGCTG+TGG | - | chr4_3:55042580-55042599 | Msa0648560:intron | 35.0% | |
| AATCTAATCACAAAGGCTGT+GGG | - | chr4_3:55042581-55042600 | Msa0648560:intron | 35.0% | |
| ! | TGTTTTCAAACAGATGCATC+CGG | - | chr4_3:55042735-55042754 | Msa0648560:intron | 35.0% |
| ATGCCTTTCGGATGTATTAT+TGG | - | chr4_3:55042765-55042784 | Msa0648560:intron | 35.0% | |
| ATGCCAATAATACATCCGAA+AGG | + | chr4_3:55042771-55042790 | None:intergenic | 35.0% | |
| ! | TGCTGCTACGTACAATATTT+TGG | - | chr4_3:55042889-55042908 | Msa0648560:intron | 35.0% |
| CTCTATCCACATTGCATATA+TGG | - | chr4_3:55043045-55043064 | Msa0648560:intron | 35.0% | |
| ATTAGCCAGGAAATAACAGA+AGG | - | chr4_3:55043097-55043116 | Msa0648560:intron | 35.0% | |
| !! | TGATTCCTTCTGTTATTTCC+TGG | + | chr4_3:55043105-55043124 | None:intergenic | 35.0% |
| GAAACTGGAATTCGACATAT+CGG | - | chr4_3:55043154-55043173 | Msa0648560:intron | 35.0% | |
| ! | GATTTATTCCTTTAGTGGGT+TGG | - | chr4_3:55043585-55043604 | Msa0648560:intron | 35.0% |
| GAATTTATTGATGTGGCTAG+AGG | + | chr4_3:55044030-55044049 | None:intergenic | 35.0% | |
| AATAATCAGACCAACAGTAG+AGG | + | chr4_3:55044429-55044448 | None:intergenic | 35.0% | |
| AACAGGTTGCAGAGATATTT+CGG | + | chr4_3:55044495-55044514 | None:intergenic | 35.0% | |
| AGCTTGATGAACATGATTTC+AGG | - | chr4_3:55044566-55044585 | Msa0648560:CDS | 35.0% | |
| TGATGAACATGATTTCAGGA+AGG | - | chr4_3:55044570-55044589 | Msa0648560:CDS | 35.0% | |
| GATGAACATGATTTCAGGAA+GGG | - | chr4_3:55044571-55044590 | Msa0648560:CDS | 35.0% | |
| ATACCTTCCCACACTATATT+AGG | + | chr4_3:55044700-55044719 | None:intergenic | 35.0% | |
| !! | GGGAAGGTATTGAAAAGTAA+TGG | - | chr4_3:55044710-55044729 | Msa0648560:CDS | 35.0% |
| GTGTCTTAATACTGTGAGAA+TGG | - | chr4_3:55044785-55044804 | Msa0648560:exon | 35.0% | |
| TTTGAGTATAAGTGACCTAC+AGG | - | chr4_3:55044833-55044852 | Msa0648560:five_prime_UTR | 35.0% | |
| ! | AAAAATAGCTTGTAGCCTGT+AGG | + | chr4_3:55044851-55044870 | None:intergenic | 35.0% |
| TATGAACGAGATAGAGTTGG+AGG | - | chr4_3:55038454-55038473 | Msa0648560:three_prime_UTR | 40.0% | |
| GTTGTTGTAGTTGAAGTGTG+TGG | + | chr4_3:55038657-55038676 | None:intergenic | 40.0% | |
| AGAATTGCTGGATCCATTAG+AGG | + | chr4_3:55038772-55038791 | None:intergenic | 40.0% | |
| TGGTCACTGAAGTTAAGCTT+AGG | + | chr4_3:55038873-55038892 | None:intergenic | 40.0% | |
| ATGCGAGAAGAAAGAAAGCT+TGG | + | chr4_3:55038893-55038912 | None:intergenic | 40.0% | |
| GTGTTTGGATAAACTCAAGC+AGG | + | chr4_3:55039188-55039207 | None:intergenic | 40.0% | |
| TTACTTAGGCTCTGTCTGTT+TGG | - | chr4_3:55039230-55039249 | Msa0648560:intron | 40.0% | |
| ACTTACAAATAGGGTGGGAA+CGG | + | chr4_3:55039885-55039904 | None:intergenic | 40.0% | |
| !!! | TGTTAGTTTTATGTTGGGGG+TGG | - | chr4_3:55040233-55040252 | Msa0648560:CDS | 40.0% |
| AAATAGGATGAAGACAAGGG+TGG | + | chr4_3:55040307-55040326 | None:intergenic | 40.0% | |
| !!! | TTTTTTCTTGGAGGGAGCAT+TGG | - | chr4_3:55040350-55040369 | Msa0648560:intron | 40.0% |
| CTCATCACATAACACCTCTT+AGG | + | chr4_3:55040392-55040411 | None:intergenic | 40.0% | |
| CGACAGATTCATTCAAAGCA+AGG | + | chr4_3:55041111-55041130 | None:intergenic | 40.0% | |
| !! | CTGTGCTTTTTATTGGTTGC+TGG | - | chr4_3:55041364-55041383 | Msa0648560:intron | 40.0% |
| GGATTTAAATTGGCAGGGTT+TGG | - | chr4_3:55041597-55041616 | Msa0648560:intron | 40.0% | |
| TGTGTTAAAGTATGAGCCAG+GGG | - | chr4_3:55041630-55041649 | Msa0648560:intron | 40.0% | |
| ATCCGATACTCGTATCGTAT+CGG | + | chr4_3:55041752-55041771 | None:intergenic | 40.0% | |
| GTATCGGATACATCGATATG+CGG | - | chr4_3:55041763-55041782 | Msa0648560:intron | 40.0% | |
| ATATAGGACACGATGCGTTT+AGG | - | chr4_3:55041797-55041816 | Msa0648560:intron | 40.0% | |
| AACGAAGCAGATAGCCATTT+AGG | - | chr4_3:55042643-55042662 | Msa0648560:intron | 40.0% | |
| !! | TAATACATCCGAAAGGCATC+CGG | + | chr4_3:55042764-55042783 | None:intergenic | 40.0% |
| GTATCTGTATCGGATACGTT+GGG | + | chr4_3:55042796-55042815 | None:intergenic | 40.0% | |
| CAACGTATCCGATACAGATA+CGG | - | chr4_3:55042795-55042814 | Msa0648560:intron | 40.0% | |
| CATCAGAGATTTAGCCCTTA+AGG | - | chr4_3:55042840-55042859 | Msa0648560:intron | 40.0% | |
| !! | AATTCGACATATCGGTTCAG+TGG | - | chr4_3:55043162-55043181 | Msa0648560:intron | 40.0% |
| TAAATGCTTCAGAGCGTGTT+TGG | + | chr4_3:55043502-55043521 | None:intergenic | 40.0% | |
| GAAATAGCTAGGGAAAACCT+TGG | - | chr4_3:55043554-55043573 | Msa0648560:CDS | 40.0% | |
| !! | GCTAGAGGTTGATGTTTGAA+TGG | + | chr4_3:55044015-55044034 | None:intergenic | 40.0% |
| TGACTCACATTCTAAGCATG+TGG | + | chr4_3:55044308-55044327 | None:intergenic | 40.0% | |
| AGTAACGAGATCAATACCGT+TGG | + | chr4_3:55044343-55044362 | None:intergenic | 40.0% | |
| TATTGATCTCGTTACTGCAG+TGG | - | chr4_3:55044347-55044366 | Msa0648560:intron | 40.0% | |
| CAATCTGTGTATCTGGGAAT+TGG | + | chr4_3:55044383-55044402 | None:intergenic | 40.0% | |
| GACAGTCAATCTGTGTATCT+GGG | + | chr4_3:55044389-55044408 | None:intergenic | 40.0% | |
| AGAGGATAGACAAGATTGCT+CGG | + | chr4_3:55044411-55044430 | None:intergenic | 40.0% | |
| TCTTGTCTATCCTCTACTGT+TGG | - | chr4_3:55044416-55044435 | Msa0648560:intron | 40.0% | |
| ATTCGCTCTCTCTTCAATCA+TGG | + | chr4_3:55044468-55044487 | None:intergenic | 40.0% | |
| ACAGGTTGCAGAGATATTTC+GGG | + | chr4_3:55044494-55044513 | None:intergenic | 40.0% | |
| !! | AGAAAGACTTCTAGAGCAGT+TGG | - | chr4_3:55044530-55044549 | Msa0648560:CDS | 40.0% |
| TCATCAAGCTCTTTGTTGCT+CGG | + | chr4_3:55044556-55044575 | None:intergenic | 40.0% | |
| TGTCCTAATATAGTGTGGGA+AGG | - | chr4_3:55044694-55044713 | Msa0648560:CDS | 40.0% | |
| ! | GCTACATAAAAGAAGTGCAG+TGG | - | chr4_3:55044807-55044826 | Msa0648560:five_prime_UTR | 40.0% |
| TCTCGCATTCATTGCTTGCA+CGG | - | chr4_3:55038905-55038924 | Msa0648560:CDS | 45.0% | |
| TATCTTACCAAACAGACCCC+TGG | - | chr4_3:55039594-55039613 | Msa0648560:intron | 45.0% | |
| TGATAACCACCTACACACCA+GGG | + | chr4_3:55039614-55039633 | None:intergenic | 45.0% | |
| ATGATAACCACCTACACACC+AGG | + | chr4_3:55039615-55039634 | None:intergenic | 45.0% | |
| ATTGTCTCTGCAGACTTCAG+TGG | - | chr4_3:55039835-55039854 | Msa0648560:intron | 45.0% | |
| !! | TTAGAGAAGAGTGCTAGGCT+CGG | - | chr4_3:55040464-55040483 | Msa0648560:intron | 45.0% |
| GTCAAATATCCTGTATGCGG+TGG | - | chr4_3:55040575-55040594 | Msa0648560:CDS | 45.0% | |
| GATCAATTTCCACCGCATAC+AGG | + | chr4_3:55040587-55040606 | None:intergenic | 45.0% | |
| GCAGCATTTCTCATTGCCTA+AGG | + | chr4_3:55040958-55040977 | None:intergenic | 45.0% | |
| AAGTTCCTCACGAGCTGTAT+CGG | + | chr4_3:55041001-55041020 | None:intergenic | 45.0% | |
| !! | CAGTAAGAATGGGTTGAGTG+TGG | + | chr4_3:55041269-55041288 | None:intergenic | 45.0% |
| !! | GCTTTTTATTGGTTGCTGGG+AGG | - | chr4_3:55041368-55041387 | Msa0648560:intron | 45.0% |
| CCAGGGGATACAATGATACA+GGG | - | chr4_3:55041646-55041665 | Msa0648560:CDS | 45.0% | |
| ! | GTATCGTATCGGTGCATCAT+AGG | + | chr4_3:55041741-55041760 | None:intergenic | 45.0% |
| CACCGATACGATACGAGTAT+CGG | - | chr4_3:55041747-55041766 | Msa0648560:intron | 45.0% | |
| GAAGAAGGTTCTCGAGACAT+TGG | - | chr4_3:55042529-55042548 | Msa0648560:intron | 45.0% | |
| GGTTCAAAACGCATGAGACT+TGG | - | chr4_3:55042602-55042621 | Msa0648560:intron | 45.0% | |
| ! | AAAACGCATGAGACTTGGTC+TGG | - | chr4_3:55042607-55042626 | Msa0648560:intron | 45.0% |
| TTGAGGAGACGCAACCTAAA+TGG | + | chr4_3:55042660-55042679 | None:intergenic | 45.0% | |
| CTCTGATACGCCAAAACTTG+AGG | + | chr4_3:55042677-55042696 | None:intergenic | 45.0% | |
| AAACAGATGCATCCGGAATC+CGG | - | chr4_3:55042742-55042761 | Msa0648560:intron | 45.0% | |
| CGTATCTGTATCGGATACGT+TGG | + | chr4_3:55042797-55042816 | None:intergenic | 45.0% | |
| TGTACGTAGCAGCAAGAAAC+AGG | + | chr4_3:55042883-55042902 | None:intergenic | 45.0% | |
| AGAACGTTCCAACCCACTAA+AGG | + | chr4_3:55043596-55043615 | None:intergenic | 45.0% | |
| CTGCAGTGAACCCAAATCAA+TGG | + | chr4_3:55044184-55044203 | None:intergenic | 45.0% | |
| GGACAGTCAATCTGTGTATC+TGG | + | chr4_3:55044390-55044409 | None:intergenic | 45.0% | |
| TCTCTGCAACCTGTTGTTGT+AGG | - | chr4_3:55044500-55044519 | Msa0648560:CDS | 45.0% | |
| !! | TTCAAAAAATAAAATTAAAT+AGG | + | chr4_3:55040196-55040215 | None:intergenic | 5.0% |
| !!! | TTTTCAATATATTTATTTTA+GGG | + | chr4_3:55042409-55042428 | None:intergenic | 5.0% |
| !!! | TTTTTCAATATATTTATTTT+AGG | + | chr4_3:55042410-55042429 | None:intergenic | 5.0% |
| GATAACCACCTACACACCAG+GGG | + | chr4_3:55039613-55039632 | None:intergenic | 50.0% | |
| CAGACTTCAGTGGCATTCAC+TGG | - | chr4_3:55039845-55039864 | Msa0648560:intron | 50.0% | |
| TGGGAACGGCAGCAAAAACA+AGG | + | chr4_3:55039871-55039890 | None:intergenic | 50.0% | |
| ! | TGAAGACAAGGGTGGTTTGG+TGG | + | chr4_3:55040299-55040318 | None:intergenic | 50.0% |
| GGATGAAGACAAGGGTGGTT+TGG | + | chr4_3:55040302-55040321 | None:intergenic | 50.0% | |
| TGAAAGCCTCATAGCAGCCA+TGG | + | chr4_3:55041031-55041050 | None:intergenic | 50.0% | |
| ATGGCTGCTATGAGGCTTTC+AGG | - | chr4_3:55041030-55041049 | Msa0648560:intron | 50.0% | |
| TGGCTGCTATGAGGCTTTCA+GGG | - | chr4_3:55041031-55041050 | Msa0648560:intron | 50.0% | |
| TGCTATGAGGCTTTCAGGGA+TGG | - | chr4_3:55041035-55041054 | Msa0648560:intron | 50.0% | |
| GCCAGGGGATACAATGATAC+AGG | - | chr4_3:55041645-55041664 | Msa0648560:CDS | 50.0% | |
| CCCTGTATCATTGTATCCCC+TGG | + | chr4_3:55041649-55041668 | None:intergenic | 50.0% | |
| GAGGGACTAATACTGAGTGC+AGG | + | chr4_3:55041970-55041989 | None:intergenic | 50.0% | |
| ! | GGTTGCGTCTCCTCAAGTTT+TGG | - | chr4_3:55042664-55042683 | Msa0648560:intron | 50.0% |
| GCTTTGCAAGCAGCAGAAAC+TGG | - | chr4_3:55043139-55043158 | Msa0648560:intron | 50.0% | |
| CTTGCAGCTCCTACAACAAC+AGG | + | chr4_3:55044512-55044531 | None:intergenic | 50.0% | |
| CTACACACCAGGGGTCTGTT+TGG | + | chr4_3:55039604-55039623 | None:intergenic | 55.0% | |
| CAAACAGACCCCTGGTGTGT+AGG | - | chr4_3:55039602-55039621 | Msa0648560:intron | 55.0% | |
| !! | ACAAGGGTGGTTTGGTGGTG+GGG | + | chr4_3:55040294-55040313 | None:intergenic | 55.0% |
| !! | GACAAGGGTGGTTTGGTGGT+GGG | + | chr4_3:55040295-55040314 | None:intergenic | 55.0% |
| !! | AGACAAGGGTGGTTTGGTGG+TGG | + | chr4_3:55040296-55040315 | None:intergenic | 55.0% |
| TGAGGAACTTCCGAGCACCA+TGG | - | chr4_3:55041011-55041030 | Msa0648560:intron | 55.0% | |
| CTCATAGCAGCCATGGTGCT+CGG | + | chr4_3:55041024-55041043 | None:intergenic | 55.0% | |
| TCCGGAATCCGGATGCCTTT+CGG | - | chr4_3:55042753-55042772 | Msa0648560:intron | 55.0% | |
| !! | TCCGAAAGGCATCCGGATTC+CGG | + | chr4_3:55042757-55042776 | None:intergenic | 55.0% |
| ACAGACCCCTGGTGTGTAGG+TGG | - | chr4_3:55039605-55039624 | Msa0648560:intron | 60.0% | |
| GGGGTGGGGGAGTTAAAGAG+TGG | + | chr4_3:55040275-55040294 | None:intergenic | 60.0% | |
| GCTAGCCGATACAGCTCGTG+AGG | - | chr4_3:55040993-55041012 | Msa0648560:intron | 60.0% | |
| CGAGCACCATGGCTGCTATG+AGG | - | chr4_3:55041022-55041041 | Msa0648560:intron | 60.0% | |
| !! | GTGGTTTGGTGGTGGGGTGG+GGG | + | chr4_3:55040288-55040307 | None:intergenic | 65.0% |
| !! | GGTGGTTTGGTGGTGGGGTG+GGG | + | chr4_3:55040289-55040308 | None:intergenic | 65.0% |
| !! | GGGTGGTTTGGTGGTGGGGT+GGG | + | chr4_3:55040290-55040309 | None:intergenic | 65.0% |
| !! | AGGGTGGTTTGGTGGTGGGG+TGG | + | chr4_3:55040291-55040310 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 55038447 | 55044974 | 55038447 | ID=Msa0648560;Name=Msa0648560 |
| chr4_3 | mRNA | 55038447 | 55044974 | 55038447 | ID=Msa0648560-mRNA-1;Parent=Msa0648560;Name=Msa0648560-mRNA-1;_AED=0.10;_eAED=0.10;_QI=171|0.5|0.57|0.71|1|1|7|340|316 |
| chr4_3 | exon | 55038447 | 55038956 | 55038447 | ID=Msa0648560-mRNA-1:exon:14001;Parent=Msa0648560-mRNA-1 |
| chr4_3 | exon | 55040219 | 55040315 | 55040219 | ID=Msa0648560-mRNA-1:exon:14000;Parent=Msa0648560-mRNA-1 |
| chr4_3 | exon | 55040539 | 55040673 | 55040539 | ID=Msa0648560-mRNA-1:exon:13999;Parent=Msa0648560-mRNA-1 |
| chr4_3 | exon | 55041637 | 55041691 | 55041637 | ID=Msa0648560-mRNA-1:exon:13998;Parent=Msa0648560-mRNA-1 |
| chr4_3 | exon | 55042327 | 55042460 | 55042327 | ID=Msa0648560-mRNA-1:exon:13997;Parent=Msa0648560-mRNA-1 |
| chr4_3 | exon | 55043523 | 55043573 | 55043523 | ID=Msa0648560-mRNA-1:exon:13996;Parent=Msa0648560-mRNA-1 |
| chr4_3 | exon | 55044495 | 55044974 | 55044495 | ID=Msa0648560-mRNA-1:exon:13995;Parent=Msa0648560-mRNA-1 |
| chr4_3 | five_prime_UTR | 55044804 | 55044974 | 55044804 | ID=Msa0648560-mRNA-1:five_prime_utr;Parent=Msa0648560-mRNA-1 |
| chr4_3 | CDS | 55044495 | 55044803 | 55044495 | ID=Msa0648560-mRNA-1:cds;Parent=Msa0648560-mRNA-1 |
| chr4_3 | CDS | 55043523 | 55043573 | 55043523 | ID=Msa0648560-mRNA-1:cds;Parent=Msa0648560-mRNA-1 |
| chr4_3 | CDS | 55042327 | 55042460 | 55042327 | ID=Msa0648560-mRNA-1:cds;Parent=Msa0648560-mRNA-1 |
| chr4_3 | CDS | 55041637 | 55041691 | 55041637 | ID=Msa0648560-mRNA-1:cds;Parent=Msa0648560-mRNA-1 |
| chr4_3 | CDS | 55040539 | 55040673 | 55040539 | ID=Msa0648560-mRNA-1:cds;Parent=Msa0648560-mRNA-1 |
| chr4_3 | CDS | 55040219 | 55040315 | 55040219 | ID=Msa0648560-mRNA-1:cds;Parent=Msa0648560-mRNA-1 |
| chr4_3 | CDS | 55038787 | 55038956 | 55038787 | ID=Msa0648560-mRNA-1:cds;Parent=Msa0648560-mRNA-1 |
| chr4_3 | three_prime_UTR | 55038447 | 55038786 | 55038447 | ID=Msa0648560-mRNA-1:three_prime_utr;Parent=Msa0648560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
