AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0833660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833660 MtrunA17_Chr5g0398901 97.938 582 11 1 1 582 1 581 0.0 1177
Msa0833660 MtrunA17_Chr5g0398951 81.319 91 16 1 242 332 4 93 4.94e-42 146
Msa0833660 MtrunA17_Chr3g0097231 31.651 218 119 6 2 199 11 218 1.07e-19 92.4
Msa0833660 MtrunA17_Chr3g0097231 32.759 116 78 0 393 508 11 126 4.11e-13 72.0
Msa0833660 MtrunA17_Chr1g0166441 36.441 118 75 0 397 514 15 132 3.99e-19 89.0
Msa0833660 MtrunA17_Chr1g0166441 35.354 99 64 0 6 104 15 113 1.12e-13 72.4
Msa0833660 MtrunA17_Chr7g0274241 39.655 116 70 0 2 117 335 450 6.72e-17 83.6
Msa0833660 MtrunA17_Chr7g0274241 34.211 114 75 0 393 506 335 448 1.24e-16 82.8
Msa0833660 MtrunA17_Chr1g0160051 36.937 111 69 1 1 110 180 290 1.77e-16 82.4
Msa0833660 MtrunA17_Chr1g0160051 31.092 119 81 1 385 502 173 291 2.58e-12 69.3
Msa0833660 MtrunA17_Chr5g0397161 35.294 119 77 0 1 119 1 119 2.22e-16 81.3
Msa0833660 MtrunA17_Chr5g0397161 28.205 117 84 0 392 508 1 117 2.59e-11 65.5
Msa0833660 MtrunA17_Chr6g0470241 39.583 96 58 0 1 96 1 96 8.04e-14 73.2
Msa0833660 MtrunA17_Chr6g0470241 26.144 153 110 2 392 543 1 151 3.93e-11 65.1
Msa0833660 MtrunA17_Chr2g0316221 30.476 105 73 0 397 501 466 570 4.86e-13 72.0
Msa0833660 MtrunA17_Chr7g0237741 32.110 109 67 1 2 103 95 203 1.72e-12 68.2
Msa0833660 MtrunA17_Chr7g0237741 27.536 138 85 2 372 502 82 211 5.06e-11 63.5
Msa0833660 MtrunA17_Chr4g0050371 37.374 99 62 0 397 495 492 590 2.57e-12 69.7
Msa0833660 MtrunA17_Chr8g0393041 29.630 135 89 1 367 495 447 581 1.07e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0833660 AT1G62740.1 73.639 588 132 4 1 582 1 571 0.0 882
Msa0833660 AT4G12400.2 72.213 583 136 4 1 582 1 558 0.0 882
Msa0833660 AT1G12270.1 73.424 587 136 6 1 582 1 572 0.0 848
Msa0833660 AT4G12400.1 71.481 547 130 4 1 546 1 522 0.0 819
Msa0833660 AT4G12400.1 32.258 186 125 1 392 576 1 186 5.26e-22 100
Msa0833660 AT1G04190.1 40.816 98 58 0 6 103 19 116 7.95e-18 85.5
Msa0833660 AT1G04190.1 39.623 106 64 0 397 502 19 124 1.35e-17 84.7
Msa0833660 AT4G08320.1 31.361 169 112 3 1 168 174 339 4.74e-17 84.3
Msa0833660 AT4G08320.1 33.094 139 86 3 372 508 158 291 8.14e-14 74.3
Msa0833660 AT4G08320.2 37.069 116 72 1 1 115 174 289 9.89e-17 83.2
Msa0833660 AT4G08320.2 33.094 139 86 3 372 508 158 291 7.35e-14 74.3
Msa0833660 AT3G04710.3 40.000 110 66 0 8 117 558 667 6.30e-16 81.6
Msa0833660 AT3G04710.3 30.841 107 74 0 399 505 558 664 2.52e-13 73.6
Msa0833660 AT3G04710.1 40.000 110 66 0 8 117 334 443 7.11e-16 80.9
Msa0833660 AT3G04710.1 30.841 107 74 0 399 505 334 440 1.52e-13 73.6
Msa0833660 AT3G04710.2 40.000 110 66 0 8 117 333 442 7.27e-16 80.9
Msa0833660 AT3G04710.2 30.841 107 74 0 399 505 333 439 1.47e-13 73.6
Msa0833660 AT2G42810.1 26.636 214 135 4 2 199 13 220 2.25e-15 79.3
Msa0833660 AT2G42810.1 31.429 140 96 0 389 528 9 148 7.00e-15 77.8
Msa0833660 AT2G42810.5 26.636 214 135 4 2 199 13 220 2.25e-15 79.3
Msa0833660 AT2G42810.5 31.429 140 96 0 389 528 9 148 7.00e-15 77.8
Msa0833660 AT2G42810.4 26.636 214 135 4 2 199 13 220 2.25e-15 79.3
Msa0833660 AT2G42810.4 31.429 140 96 0 389 528 9 148 7.00e-15 77.8
Msa0833660 AT4G11260.1 36.449 107 68 0 1 107 1 107 6.02e-15 77.0
Msa0833660 AT2G42810.3 31.429 140 96 0 389 528 9 148 7.22e-15 78.2
Msa0833660 AT2G42810.3 33.621 116 77 0 2 117 13 128 1.01e-14 77.4
Msa0833660 AT2G42810.2 31.429 140 96 0 389 528 9 148 7.37e-15 78.2
Msa0833660 AT2G42810.2 33.621 116 77 0 2 117 13 128 1.09e-14 77.4
Msa0833660 AT4G22670.1 36.893 103 65 0 2 104 123 225 8.80e-13 71.2
Msa0833660 AT3G17970.1 35.922 103 66 0 393 495 474 576 3.24e-12 69.7
Msa0833660 AT1G53300.1 28.829 111 79 0 391 501 463 573 6.81e-12 68.9
Msa0833660 AT1G78120.2 29.600 125 87 1 400 523 166 290 6.65e-11 65.5
Msa0833660 AT1G78120.1 29.600 125 87 1 400 523 166 290 7.29e-11 65.5
Msa0833660 AT4G23570.1 27.473 182 118 5 25 202 25 196 7.45e-11 64.3
Msa0833660 AT4G23570.2 27.473 182 118 5 25 202 25 196 7.45e-11 64.3
Msa0833660 AT3G58620.2 26.923 156 97 3 349 502 418 558 7.88e-11 65.5

Find 222 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCCTCATCAGCCAAATT+TGG 0.136072 5_4:+6755273 None:intergenic
CAAATACAAATTCAAATTAT+TGG 0.139538 5_4:+6757769 None:intergenic
TTCTACTAGGGTCTGGGGTT+GGG 0.160704 5_4:+6758474 None:intergenic
GATTTCAAGGGTTCATTATT+AGG 0.169330 5_4:+6757983 None:intergenic
CAGCTTCATTGAGTTTCTTC+AGG 0.191835 5_4:+6755337 None:intergenic
AGAATACTTCGATCCAAATT+TGG 0.199740 5_4:-6755286 Msa0833660:CDS
GAGAGAGTGGGTTAGGTTAT+AGG 0.204685 5_4:+6758427 None:intergenic
TTTACTTTGTTGATGTTGAT+TGG 0.217020 5_4:+6758374 None:intergenic
TTGAGTTTCTTCAGGGTGTC+TGG 0.227086 5_4:+6755345 None:intergenic
TTGTTGTTCTAGTTCTTTCT+TGG 0.227451 5_4:+6755308 None:intergenic
AGGTTCATTGCTTAGAAATT+AGG 0.238421 5_4:-6753866 Msa0833660:three_prime_UTR
AGTTGAAATCGAAAGGGTTT+TGG 0.241292 5_4:+6758317 None:intergenic
TTGAATTTGACAATATTATA+TGG 0.247524 5_4:+6753503 None:intergenic
CAGAGAGTTATGCAAGCTTT+TGG 0.262229 5_4:-6757740 Msa0833660:CDS
TCCATCAAATTTACTTCATC+TGG 0.263023 5_4:+6754213 None:intergenic
TTCCGGCACTGATCAGCTTT+TGG 0.271295 5_4:+6754240 None:intergenic
AAATACAAATTCAAATTATT+GGG 0.271371 5_4:+6757770 None:intergenic
GTCCATCACACCCGGGTTCT+TGG 0.290667 5_4:+6754268 None:intergenic
TTACTTTGTTGATGTTGATT+GGG 0.290830 5_4:+6758375 None:intergenic
CATCATGTTTCAACCCTTCC+TGG 0.293057 5_4:+6754770 None:intergenic
GCAGGTATTGGTTGATTTCC+AGG 0.298727 5_4:-6754318 Msa0833660:intron
AGCTGCATGTTACACAAAAC+TGG 0.310459 5_4:-6754923 Msa0833660:CDS
TCTACTAGGGTCTGGGGTTG+GGG 0.311038 5_4:+6758475 None:intergenic
TCCTCCATTGGCTCCGGTTC+CGG 0.312001 5_4:+6757590 None:intergenic
TCCGAACTGGACGGCATATC+AGG 0.312824 5_4:+6757668 None:intergenic
AAGCAAACCTGTCTCATAAC+AGG 0.314328 5_4:+6754416 None:intergenic
TTCCTATTGTGACTTTGATT+TGG 0.317739 5_4:-6754154 Msa0833660:three_prime_UTR
GGCAATGCCTGAAGGTTTAA+AGG 0.321704 5_4:-6754899 Msa0833660:CDS
TCCAGATGAAGTAAATTTGA+TGG 0.333610 5_4:-6754214 Msa0833660:exon
GCTGATGAGGAGAGAGAAAA+AGG 0.335378 5_4:-6755264 Msa0833660:intron
GTATGTCTTGTGTTTGTTGT+AGG 0.335866 5_4:-6753643 Msa0833660:three_prime_UTR
GTTTGTTGTAGGCAGTATTT+TGG 0.336116 5_4:-6753632 Msa0833660:three_prime_UTR
TTAAAGCGTCAGTGTAATTC+TGG 0.337616 5_4:+6758137 None:intergenic
AAAACTGAACCGCACCCTTC+CGG 0.339040 5_4:+6754827 None:intergenic
GTATGTTCCTGTGCAGCCTT+TGG 0.339809 5_4:+6754290 None:intergenic
TCTGCATCCTTTAAACCTTC+AGG 0.340625 5_4:+6754892 None:intergenic
TGTCTCTCCTTCAACTCTTC+AGG 0.344507 5_4:+6754572 None:intergenic
TGGTTATTCAATCTAAATCT+AGG 0.345616 5_4:-6753990 Msa0833660:three_prime_UTR
AATAATGAACCCTTGAAATC+AGG 0.348019 5_4:-6757980 Msa0833660:CDS
TGCATCATCTTCACAAAATC+AGG 0.348278 5_4:+6757809 None:intergenic
GTTCTACTAGGGTCTGGGGT+TGG 0.352820 5_4:+6758473 None:intergenic
TTTGTTGAATAAACGAAAAC+GGG 0.358914 5_4:-6753821 Msa0833660:three_prime_UTR
AAACTGAACCGCACCCTTCC+GGG 0.362337 5_4:+6754828 None:intergenic
GAACCCCTTCAAGCAATTCC+TGG 0.364967 5_4:+6754740 None:intergenic
TGCGTTTACAATGCAGTAAC+AGG 0.368288 5_4:-6753936 Msa0833660:three_prime_UTR
TTATTCGAAAGCTTTGGAAT+TGG 0.368370 5_4:-6757456 Msa0833660:CDS
GGATAGAGAGAGAGTGGGTT+AGG 0.369650 5_4:+6758420 None:intergenic
TTACTTCATCTGGACAATTC+CGG 0.371932 5_4:+6754223 None:intergenic
TAATTTGAATTTGTATTTGA+AGG 0.375764 5_4:-6757765 Msa0833660:CDS
TAACCGTGCTGCTGTATACT+TGG 0.383148 5_4:-6757408 Msa0833660:CDS
CTGTAACCCTTTGACCAATC+AGG 0.384513 5_4:+6758085 None:intergenic
CGTCTCGGTGCCGCTCATCT+TGG 0.384527 5_4:-6758061 Msa0833660:CDS
ATTGGCTCCGGTTCCGGCTC+AGG 0.388295 5_4:+6757596 None:intergenic
GGAGAATGCAGCGTTGCCTT+TGG 0.390754 5_4:+6758264 None:intergenic
AAGAGAGGATAGAGAGAGAG+TGG 0.392842 5_4:+6758414 None:intergenic
TCTGCATTATTCGAAAGCTT+TGG 0.393752 5_4:-6757462 Msa0833660:CDS
TCCGCCTGCTTTGCCACCTC+AGG 0.396836 5_4:+6757626 None:intergenic
GTCTCATAACAGGGTCTTGA+AGG 0.401205 5_4:+6754426 None:intergenic
TTCTAGGCCACGTTCTGCGC+CGG 0.406464 5_4:-6757921 Msa0833660:CDS
TGAAGGATGTTCTGAATCTC+TGG 0.407523 5_4:+6754443 None:intergenic
TCTTCAGGGTGTCTGGGTTA+CGG 0.408287 5_4:+6755352 None:intergenic
TAGAGAGTTCTACTAGGGTC+TGG 0.408614 5_4:+6758467 None:intergenic
ATTTAGAGCAACGACCTTGA+TGG 0.412320 5_4:+6753705 None:intergenic
CAGCGGATCGGTTGGAATAC+AGG 0.412654 5_4:+6758173 None:intergenic
TGAAGATAAACCCTAGTTGT+AGG 0.413840 5_4:+6757836 None:intergenic
GTGTAATGCTTAATAGCTTC+AGG 0.414719 5_4:+6755077 None:intergenic
GCGCCGGGTGCCAATCCGTT+TGG 0.416911 5_4:-6757905 Msa0833660:CDS
TGGATTGGAAGTACAATAGT+TGG 0.420764 5_4:-6754118 Msa0833660:three_prime_UTR
TCTAGGCCACGTTCTGCGCC+GGG 0.422100 5_4:-6757920 Msa0833660:CDS
GATTTGGTATTGGAATAGAT+TGG 0.424663 5_4:-6754138 Msa0833660:three_prime_UTR
GAAAGAATATGAAAAGGCTT+TGG 0.427879 5_4:-6754800 Msa0833660:CDS
ATCGGCTAAACCTGATTTCA+AGG 0.428004 5_4:+6757970 None:intergenic
AGCTTCATTGAGTTTCTTCA+GGG 0.428316 5_4:+6755338 None:intergenic
TTGTGACTTTGATTTGGTAT+TGG 0.428426 5_4:-6754148 Msa0833660:three_prime_UTR
GCTGTTTCAGCTTACAAGAA+AGG 0.435873 5_4:-6758019 Msa0833660:CDS
TGCTGCTGTATACTTGGAAA+TGG 0.437857 5_4:-6757402 Msa0833660:CDS
TACTTTGTTGATGTTGATTG+GGG 0.441458 5_4:+6758376 None:intergenic
TGAACCTGAGGTGGCAAAGC+AGG 0.443025 5_4:-6757630 Msa0833660:CDS
CTCAAACCTGATTGGTCAAA+GGG 0.450036 5_4:-6758091 Msa0833660:CDS
TGAAGAGTTGAAGGAGAGAC+AGG 0.450058 5_4:-6754570 Msa0833660:intron
TGAGTTTCTTCAGGGTGTCT+GGG 0.451649 5_4:+6755346 None:intergenic
GTTTGTTGAATAAACGAAAA+CGG 0.451756 5_4:-6753822 Msa0833660:three_prime_UTR
GGTTGAGCCTGAGCCGGAAC+CGG 0.452769 5_4:-6757603 Msa0833660:CDS
CTGTTTCAGCTTACAAGAAA+GGG 0.455044 5_4:-6758018 Msa0833660:CDS
GCACCTCTCTTTGCAAGAAA+AGG 0.455427 5_4:-6753886 Msa0833660:three_prime_UTR
GGAGGTGGCTGATGAGGAGA+AGG 0.455482 5_4:-6757570 Msa0833660:CDS
TCATCAGCCACCTCCTCCAT+TGG 0.457433 5_4:+6757578 None:intergenic
TACCAAATCAAAGTCACAAT+AGG 0.459976 5_4:+6754152 None:intergenic
TGGATCTTGTCCATCACACC+CGG 0.459995 5_4:+6754260 None:intergenic
GAGGAAGGCTGAGGCGCAGA+AGG 0.460304 5_4:-6757537 Msa0833660:CDS
GGCTTTAGCTTCGTCGGCCA+TGG 0.464637 5_4:+6758285 None:intergenic
TCAAGACCCTGTTATGAGAC+AGG 0.467657 5_4:-6754423 Msa0833660:intron
CTTAATGTTAAGATTGGAAG+AGG 0.468931 5_4:-6757710 Msa0833660:CDS
AGCTCTCTTCCTCTCCGAAC+TGG 0.469541 5_4:+6757655 None:intergenic
GCCTGATATGCCGTCCAGTT+CGG 0.472399 5_4:-6757669 Msa0833660:CDS
GTCGTGTGCATGCTTTCAAT+TGG 0.473573 5_4:-6754010 Msa0833660:three_prime_UTR
AGGAACTGCCATGGGTAAAA+CGG 0.477231 5_4:-6755436 Msa0833660:CDS
CGATCCAAATTTGGCTGATG+AGG 0.478253 5_4:-6755277 Msa0833660:CDS
GGATTGGAAGTACAATAGTT+GGG 0.482953 5_4:-6754117 Msa0833660:three_prime_UTR
TGTAACTCCTGAAGAGTTGA+AGG 0.487207 5_4:-6754579 Msa0833660:CDS
TTTAGAGCAACGACCTTGAT+GGG 0.487649 5_4:+6753706 None:intergenic
AGAGAGTTCTACTAGGGTCT+GGG 0.488562 5_4:+6758468 None:intergenic
TTTCATGAAAGAATATGAAA+AGG 0.488950 5_4:-6754806 Msa0833660:CDS
GAAGTAAATTTGATGGAAGA+TGG 0.489595 5_4:-6754207 Msa0833660:exon
TTGAACAATTCAGTCAGAAA+AGG 0.492536 5_4:-6753548 Msa0833660:three_prime_UTR
TACTGCTGATCCTACAACTA+GGG 0.494571 5_4:-6757846 Msa0833660:CDS
GGAAAATCCAAAGGCTGCAC+AGG 0.497888 5_4:-6754297 Msa0833660:CDS
GCGCAGAAGGAGAAGGAGGC+TGG 0.498289 5_4:-6757524 Msa0833660:CDS
GGTATTGGAATAGATTGGAT+TGG 0.499629 5_4:-6754133 Msa0833660:three_prime_UTR
GTTAACTAGAGAGTTCTACT+AGG 0.502412 5_4:+6758461 None:intergenic
ACCCTTCCGGGTATAACCCT+TGG 0.502655 5_4:+6754840 None:intergenic
GCCACCTCCTCCATTGGCTC+CGG 0.504102 5_4:+6757584 None:intergenic
TGAGCCGGAACCGGAGCCAA+TGG 0.504535 5_4:-6757594 Msa0833660:CDS
ATCCAAAAGCTGATCAGTGC+CGG 0.507708 5_4:-6754242 Msa0833660:CDS
TATAACCCTTGGTGAAGGTC+GGG 0.507749 5_4:+6754851 None:intergenic
ACCGGAGCCAATGGAGGAGG+TGG 0.508880 5_4:-6757585 Msa0833660:CDS
AACAACCAGGAATTGCTTGA+AGG 0.509120 5_4:-6754745 Msa0833660:CDS
GCCTTTGGCTTTAGCTTCGT+CGG 0.510652 5_4:+6758279 None:intergenic
GTAAGTTTCGCCCACATCTC+CGG 0.511152 5_4:+6757866 None:intergenic
GGCGGAGGTTGAGCCTGAGC+CGG 0.511864 5_4:-6757609 Msa0833660:CDS
AGGAGAAGGAAGTGAAGCAG+AGG 0.515007 5_4:-6757556 Msa0833660:CDS
GATGATGCAAGATATTCAAA+AGG 0.517290 5_4:-6757795 Msa0833660:CDS
AGGAGTTACATCCCCACGAC+TGG 0.518165 5_4:+6754592 None:intergenic
TACCAAGAACCCGGGTGTGA+TGG 0.520879 5_4:-6754270 Msa0833660:CDS
AGCGTGAGCAGCGGATCGGT+TGG 0.522057 5_4:+6758165 None:intergenic
GTTGGAATACAGGACGTGAT+TGG 0.525153 5_4:+6758183 None:intergenic
AGAGAGGATAGAGAGAGAGT+GGG 0.526148 5_4:+6758415 None:intergenic
GAATACAGGACGTGATTGGT+GGG 0.529765 5_4:+6758187 None:intergenic
GTATAACCCTTGGTGAAGGT+CGG 0.529921 5_4:+6754850 None:intergenic
TTGCATAAAAGATTGTGATA+AGG 0.530466 5_4:-6755523 Msa0833660:CDS
ATACAGGACGTGATTGGTGG+GGG 0.535184 5_4:+6758189 None:intergenic
GCAAGAGCTTTGACAAGGAA+AGG 0.536678 5_4:-6755456 Msa0833660:CDS
AATGGAGGAGGTGGCTGATG+AGG 0.538534 5_4:-6757576 Msa0833660:CDS
AGCAGCACGGTTAGTGAGGA+AGG 0.539890 5_4:+6757418 None:intergenic
TGAGGTGGCAAAGCAGGCGG+AGG 0.540052 5_4:-6757624 Msa0833660:CDS
CCGTCGAACTCAAACCTGAT+TGG 0.540548 5_4:-6758099 Msa0833660:CDS
AAAAGCATCACCAAACGGAT+TGG 0.541023 5_4:+6757895 None:intergenic
GATCGGAGTTGAAATCGAAA+GGG 0.541255 5_4:+6758311 None:intergenic
GGGTTATACCCGGAAGGGTG+CGG 0.542682 5_4:-6754836 Msa0833660:CDS
CCAATCAGGTTTGAGTTCGA+CGG 0.546460 5_4:+6758099 None:intergenic
GGCTGAGGCGCAGAAGGAGA+AGG 0.547847 5_4:-6757531 Msa0833660:CDS
ACAACCAGGAATTGCTTGAA+GGG 0.548142 5_4:-6754744 Msa0833660:CDS
GAAACTCAATGAAGCTGAGA+AGG 0.551120 5_4:-6755331 Msa0833660:CDS
GCTGCTGTATACTTGGAAAT+GGG 0.551340 5_4:-6757401 Msa0833660:CDS
GGCAACGCTGCATTCTCCTC+CGG 0.551432 5_4:-6758259 Msa0833660:CDS
GGAACCGGAGCCAATGGAGG+AGG 0.554085 5_4:-6757588 Msa0833660:CDS
GGAATACAGGACGTGATTGG+TGG 0.554167 5_4:+6758186 None:intergenic
AGCTTTGGAATTGGATGATG+AGG 0.555608 5_4:-6757447 Msa0833660:CDS
GAAGAGAGCTGCTGAACCTG+AGG 0.556646 5_4:-6757642 Msa0833660:CDS
TCCTCATTGAACAATTGAGT+CGG 0.556777 5_4:-6753598 Msa0833660:three_prime_UTR
AGATCGGAGTTGAAATCGAA+AGG 0.559867 5_4:+6758310 None:intergenic
ATAAACGAAAACGGGGAAAG+TGG 0.560542 5_4:-6753813 Msa0833660:three_prime_UTR
AAATTAATAGAACCAGTCGT+GGG 0.560810 5_4:-6754604 Msa0833660:CDS
ACTCAAACCTGATTGGTCAA+AGG 0.563775 5_4:-6758092 Msa0833660:CDS
TCAAAGGGTTACAGCCGTCT+CGG 0.565098 5_4:-6758076 Msa0833660:CDS
ATAAGTTATCATGAGTGAGA+AGG 0.565958 5_4:-6753684 Msa0833660:three_prime_UTR
TGGAAGAGGTGGTGATGATG+TGG 0.569802 5_4:-6757696 Msa0833660:CDS
TGTGATAAGGCTGTTGAAAG+AGG 0.569985 5_4:-6755510 Msa0833660:CDS
TAATGCTGCGTATAAGAAGA+AGG 0.570012 5_4:-6757501 Msa0833660:CDS
TCACCAAACGGATTGGCACC+CGG 0.570986 5_4:+6757902 None:intergenic
CAAGATGAGCGGCACCGAGA+CGG 0.571843 5_4:+6758062 None:intergenic
TGTATACTTGGAAATGGGAA+AGG 0.572009 5_4:-6757396 Msa0833660:intron
TTGGCACCCGGCGCAGAACG+TGG 0.574389 5_4:+6757914 None:intergenic
GAGAGTGAGGAATTGAAGAG+AGG 0.574842 5_4:+6758399 None:intergenic
CACCAAGGGTTATACCCGGA+AGG 0.575257 5_4:-6754842 Msa0833660:CDS
CTTTGGAAACATACCAGGAA+GGG 0.575984 5_4:-6754783 Msa0833660:CDS
AATTGCTTGAAGGGGTTCGA+AGG 0.576444 5_4:-6754735 Msa0833660:intron
TTAACTAGAGAGTTCTACTA+GGG 0.580605 5_4:+6758462 None:intergenic
GCTGCATGTTACACAAAACT+GGG 0.580641 5_4:-6754922 Msa0833660:CDS
ACCTGAGGTGGCAAAGCAGG+CGG 0.581309 5_4:-6757627 Msa0833660:CDS
CCGGGTATAACCCTTGGTGA+AGG 0.581722 5_4:+6754846 None:intergenic
GAAGGAAGTGAAGCAGAGGA+AGG 0.582452 5_4:-6757552 Msa0833660:CDS
AGTGAAGCAGAGGAAGGCTG+AGG 0.583668 5_4:-6757546 Msa0833660:CDS
TTCGTCGGCCATGGATAGAT+CGG 0.583671 5_4:+6758294 None:intergenic
TGAGGCGCAGAAGGAGAAGG+AGG 0.586945 5_4:-6757528 Msa0833660:CDS
ATACAGCAGCACGGTTAGTG+AGG 0.589306 5_4:+6757414 None:intergenic
GAGAGCTGCTGAACCTGAGG+TGG 0.589705 5_4:-6757639 Msa0833660:CDS
CAAATTAATAGAACCAGTCG+TGG 0.592861 5_4:-6754605 Msa0833660:CDS
AATACAGGACGTGATTGGTG+GGG 0.593162 5_4:+6758188 None:intergenic
ACAAGGAAAGGAACTGCCAT+GGG 0.594542 5_4:-6755444 Msa0833660:CDS
GACAAGGAAAGGAACTGCCA+TGG 0.596247 5_4:-6755445 Msa0833660:CDS
GCCGGAACCGGAGCCAATGG+AGG 0.596557 5_4:-6757591 Msa0833660:CDS
ATGTCGAGCTGCTTGCTATG+AGG 0.597876 5_4:-6753781 Msa0833660:three_prime_UTR
TTACTGCTGATCCTACAACT+AGG 0.598575 5_4:-6757847 Msa0833660:CDS
AAAGGCTTTGGAAACATACC+AGG 0.604647 5_4:-6754788 Msa0833660:CDS
ACCAAGGGTTATACCCGGAA+GGG 0.604794 5_4:-6754841 Msa0833660:CDS
AATGTTAAGATTGGAAGAGG+TGG 0.604956 5_4:-6757707 Msa0833660:CDS
TCGGCTAAACCTGATTTCAA+GGG 0.605511 5_4:+6757971 None:intergenic
GAGAAGCGTGAGCAGCGGAT+CGG 0.606528 5_4:+6758161 None:intergenic
GATGGCGGTTGCGAAATCGC+CGG 0.612453 5_4:+6758240 None:intergenic
TTTCAACTCCGATCTATCCA+TGG 0.612599 5_4:-6758302 Msa0833660:exon
CAACCAGGAATTGCTTGAAG+GGG 0.617312 5_4:-6754743 Msa0833660:CDS
TGATTTCCAGGAAAATCCAA+AGG 0.618569 5_4:-6754306 Msa0833660:CDS
GCTTTGGAAACATACCAGGA+AGG 0.619719 5_4:-6754784 Msa0833660:CDS
ACAGGAACATACCAAGAACC+CGG 0.627654 5_4:-6754279 Msa0833660:CDS
CTTGACCCGACCTTCACCAA+GGG 0.628031 5_4:-6754856 Msa0833660:CDS
CAGGCAATACGAGTCTCTGT+AGG 0.628713 5_4:-6753917 Msa0833660:three_prime_UTR
GCCGACGAAGCTAAAGCCAA+AGG 0.634082 5_4:-6758280 Msa0833660:CDS
CTCTTCCTCTCCGAACTGGA+CGG 0.634577 5_4:+6757659 None:intergenic
GGCGGTTGCGAAATCGCCGG+AGG 0.634986 5_4:+6758243 None:intergenic
CCTTCACCAAGGGTTATACC+CGG 0.641665 5_4:-6754846 Msa0833660:CDS
ACCGACTCAATTGTTCAATG+AGG 0.643351 5_4:+6753597 None:intergenic
ACTTTGTTGATGTTGATTGG+GGG 0.644256 5_4:+6758377 None:intergenic
TGATGGCATCTGAGAAGTGA+CGG 0.645347 5_4:+6758218 None:intergenic
GAGAGTTCTACTAGGGTCTG+GGG 0.653088 5_4:+6758469 None:intergenic
GGATCTTGTCCATCACACCC+GGG 0.653989 5_4:+6754261 None:intergenic
AGCAAACCTGTCTCATAACA+GGG 0.656878 5_4:+6754417 None:intergenic
GAAACATGATGCAAACAACC+AGG 0.657221 5_4:-6754758 Msa0833660:CDS
GCTTGACCCGACCTTCACCA+AGG 0.659770 5_4:-6754857 Msa0833660:CDS
AATTAATAGAACCAGTCGTG+GGG 0.662286 5_4:-6754603 Msa0833660:CDS
ATCTGAGAAGTGACGGATGG+CGG 0.664337 5_4:+6758225 None:intergenic
CTGGAGAGAAGCGTGAGCAG+CGG 0.667719 5_4:+6758156 None:intergenic
GGCATCTGAGAAGTGACGGA+TGG 0.670607 5_4:+6758222 None:intergenic
TGATAGCAAGAGCTTTGACA+AGG 0.676277 5_4:-6755461 Msa0833660:CDS
CAGGAACATACCAAGAACCC+GGG 0.680404 5_4:-6754278 Msa0833660:CDS
TAGGTGCAAGTGTAATGTTG+TGG 0.681227 5_4:-6753847 Msa0833660:three_prime_UTR
TTTCCAAGTATACAGCAGCA+CGG 0.692729 5_4:+6757405 None:intergenic
CTGCATGTTACACAAAACTG+GGG 0.696032 5_4:-6754921 Msa0833660:CDS
TTGAGAAAGACCAAGATGAG+CGG 0.707072 5_4:+6758051 None:intergenic
TTGTTGAATAAACGAAAACG+GGG 0.715300 5_4:-6753820 Msa0833660:three_prime_UTR
TGCATGTTACACAAAACTGG+GGG 0.723034 5_4:-6754920 Msa0833660:CDS
ATATGCCGTCCAGTTCGGAG+AGG 0.733223 5_4:-6757664 Msa0833660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACAAATTCAAATTATT+GGG + chr5_4:6754182-6754201 None:intergenic 10.0%
!! TTTGTCAAAAATATATAAAT+AGG + chr5_4:6754589-6754608 None:intergenic 10.0%
!! TATTATTATGATATATGTAT+TGG - chr5_4:6755256-6755275 Msa0833660:intron 10.0%
!! CAAATACAAATTCAAATTAT+TGG + chr5_4:6754183-6754202 None:intergenic 15.0%
!! TAATTTGAATTTGTATTTGA+AGG - chr5_4:6754184-6754203 Msa0833660:three_prime_UTR 15.0%
!!! TTTTAATTGGAATAGTTAAA+AGG + chr5_4:6754911-6754930 None:intergenic 15.0%
!! AAGTCTAATAAAGAAAATAA+TGG + chr5_4:6755691-6755710 None:intergenic 15.0%
!! TCATAAATATCTAATACTAT+TGG + chr5_4:6756082-6756101 None:intergenic 15.0%
!! TTGAATTTGACAATATTATA+TGG + chr5_4:6758449-6758468 None:intergenic 15.0%
!!! AACAAAGTAATGTATTTTCA+TGG + chr5_4:6755008-6755027 None:intergenic 20.0%
!!! ACATTACTTTGTTTTTTATG+TGG - chr5_4:6755015-6755034 Msa0833660:intron 20.0%
!!! CATTACTTTGTTTTTTATGT+GGG - chr5_4:6755016-6755035 Msa0833660:intron 20.0%
!!! ATTAAACATACTTTTGTTTG+TGG - chr5_4:6755146-6755165 Msa0833660:intron 20.0%
!!! TTAAACATACTTTTGTTTGT+GGG - chr5_4:6755147-6755166 Msa0833660:intron 20.0%
!! TAGATAAATTCTTCAACATT+TGG + chr5_4:6755308-6755327 None:intergenic 20.0%
!! TAAATATCTAATACTATTGG+AGG + chr5_4:6756079-6756098 None:intergenic 20.0%
!!! ATAGGATACAAATTTTACTA+TGG - chr5_4:6756273-6756292 Msa0833660:intron 20.0%
!!! GTTTTTTAATGTTAAGTCAA+GGG - chr5_4:6756366-6756385 Msa0833660:intron 20.0%
!!! ATTATTACCTTAGGATTTTT+CGG + chr5_4:6756917-6756936 None:intergenic 20.0%
!! TAATAATACTCTTTGAATTC+AGG - chr5_4:6756930-6756949 Msa0833660:intron 20.0%
!! TTTCATGAAAGAATATGAAA+AGG - chr5_4:6757143-6757162 Msa0833660:intron 20.0%
!!! CTGTATTTTGAATATTTTTC+AGG - chr5_4:6757466-6757485 Msa0833660:CDS 20.0%
!!! ATTTTGACTTGTTTTGTTTT+TGG - chr5_4:6757857-6757876 Msa0833660:CDS 20.0%
!!! ATCTTTTCTTTGATTTTGTT+TGG - chr5_4:6757984-6758003 Msa0833660:CDS 20.0%
!! ATAATAAAAAAAACCCATCA+AGG - chr5_4:6758230-6758249 Msa0833660:CDS 20.0%
!! TTACTTTGTTGATGTTGATT+GGG + chr5_4:6753577-6753596 None:intergenic 25.0%
! TTTACTTTGTTGATGTTGAT+TGG + chr5_4:6753578-6753597 None:intergenic 25.0%
!! GTTTTGCTTAATGTTAAGAT+TGG - chr5_4:6754233-6754252 Msa0833660:CDS 25.0%
! ACTTGCTTAGTTATAGTATA+TGG - chr5_4:6754739-6754758 Msa0833660:CDS 25.0%
!!! TGTAACACTTTTTCAAGTAT+GGG + chr5_4:6754812-6754831 None:intergenic 25.0%
!!! ATGTAACACTTTTTCAAGTA+TGG + chr5_4:6754813-6754832 None:intergenic 25.0%
!! TTGATAGTACATCAATTCAA+TGG + chr5_4:6754948-6754967 None:intergenic 25.0%
!!! AACTGTTTTTTTATGAAAGC+TGG - chr5_4:6755102-6755121 Msa0833660:CDS 25.0%
!! AGTCTTGTAAATGAATGTTT+GGG - chr5_4:6755208-6755227 Msa0833660:intron 25.0%
! ATAAATTCTTCAACATTTGG+AGG + chr5_4:6755305-6755324 None:intergenic 25.0%
! CCTATAAACTCCTAATTAAA+GGG + chr5_4:6755469-6755488 None:intergenic 25.0%
! TCCTATAAACTCCTAATTAA+AGG + chr5_4:6755470-6755489 None:intergenic 25.0%
! TTGGATAAAAGAAGTAGAAA+AGG - chr5_4:6755509-6755528 Msa0833660:CDS 25.0%
! TGGATAAAAGAAGTAGAAAA+GGG - chr5_4:6755510-6755529 Msa0833660:CDS 25.0%
! AACTAAAACCCTAAAATATG+CGG - chr5_4:6755597-6755616 Msa0833660:intron 25.0%
!!! TTTTTCTGGGAGAATATTAA+GGG + chr5_4:6755756-6755775 None:intergenic 25.0%
! TCTTAGAAATTCTTTAATCG+TGG - chr5_4:6755918-6755937 Msa0833660:intron 25.0%
! ATATTATTGGGGTTGTTAAA+GGG + chr5_4:6755970-6755989 None:intergenic 25.0%
! AATATTATTGGGGTTGTTAA+AGG + chr5_4:6755971-6755990 None:intergenic 25.0%
! CAGTCTTGAAAATATTATTG+GGG + chr5_4:6755981-6756000 None:intergenic 25.0%
! GCAGTCTTGAAAATATTATT+GGG + chr5_4:6755982-6756001 None:intergenic 25.0%
! AGCAGTCTTGAAAATATTAT+TGG + chr5_4:6755983-6756002 None:intergenic 25.0%
!! TCAGAGTATTATGCATATAA+CGG + chr5_4:6756033-6756052 None:intergenic 25.0%
!! GAACTTGTCAAATTTTACTA+TGG - chr5_4:6756207-6756226 Msa0833660:intron 25.0%
! TATGGTTTGAGTGTTTAAAT+AGG - chr5_4:6756225-6756244 Msa0833660:intron 25.0%
! TTGAGTGTTTAAATAGGATT+AGG - chr5_4:6756231-6756250 Msa0833660:intron 25.0%
! TATGGTTTGAGTGTTTAAAT+AGG - chr5_4:6756225-6756244 Msa0833660:intron 25.0%
! TTGAGTGTTTAAATAGGATT+AGG - chr5_4:6756231-6756250 Msa0833660:intron 25.0%
! ATAGGAAGAGAAAAATCTAA+GGG - chr5_4:6756344-6756363 Msa0833660:intron 25.0%
!!! GGTTTTTTAATGTTAAGTCA+AGG - chr5_4:6756365-6756384 Msa0833660:intron 25.0%
! AGATTCAAGGAATATTGAAT+TGG + chr5_4:6756392-6756411 None:intergenic 25.0%
! TTGCATAAAAGATTGTGATA+AGG - chr5_4:6756426-6756445 Msa0833660:intron 25.0%
! AAACAATAATGTGGAAATAG+AGG + chr5_4:6756770-6756789 None:intergenic 25.0%
! ATTGAGTCAAAACAATAATG+TGG + chr5_4:6756779-6756798 None:intergenic 25.0%
!! TTATTACCTTAGGATTTTTC+GGG + chr5_4:6756916-6756935 None:intergenic 25.0%
!!! TCAAAGAGTATTATTACCTT+AGG + chr5_4:6756926-6756945 None:intergenic 25.0%
! GAAATATTAAACACATTGCA+GGG + chr5_4:6757262-6757281 None:intergenic 25.0%
!!! ATATTTCCAGTTTCCTTTTT+TGG - chr5_4:6757275-6757294 Msa0833660:intron 25.0%
!!! TTTGAATATTTTTCAGGCTA+AGG - chr5_4:6757472-6757491 Msa0833660:CDS 25.0%
! GCAATAAGATGTGTTTATAA+TGG - chr5_4:6757596-6757615 Msa0833660:CDS 25.0%
! TAAGATGTGTTTATAATGGT+TGG - chr5_4:6757600-6757619 Msa0833660:CDS 25.0%
!! GTTTGTTGAATAAACGAAAA+CGG - chr5_4:6758127-6758146 Msa0833660:CDS 25.0%
! TTTGTTGAATAAACGAAAAC+GGG - chr5_4:6758128-6758147 Msa0833660:CDS 25.0%
TTAACTAGAGAGTTCTACTA+GGG + chr5_4:6753490-6753509 None:intergenic 30.0%
! TACTTTGTTGATGTTGATTG+GGG + chr5_4:6753576-6753595 None:intergenic 30.0%
ATAGGAAGAAGAAGAAGAAA+GGG + chr5_4:6753602-6753621 None:intergenic 30.0%
GATTTCAAGGGTTCATTATT+AGG + chr5_4:6753969-6753988 None:intergenic 30.0%
AATAATGAACCCTTGAAATC+AGG - chr5_4:6753969-6753988 Msa0833660:three_prime_UTR 30.0%
GATGATGCAAGATATTCAAA+AGG - chr5_4:6754154-6754173 Msa0833660:three_prime_UTR 30.0%
CTTAATGTTAAGATTGGAAG+AGG - chr5_4:6754239-6754258 Msa0833660:CDS 30.0%
!! TTATTCGAAAGCTTTGGAAT+TGG - chr5_4:6754493-6754512 Msa0833660:intron 30.0%
! TTAGTCTAGTTTCATTGCTA+AGG - chr5_4:6754687-6754706 Msa0833660:intron 30.0%
!!! GTAACACTTTTTCAAGTATG+GGG + chr5_4:6754811-6754830 None:intergenic 30.0%
!!! GTTAAACACTTTTTCACCTA+GGG + chr5_4:6754855-6754874 None:intergenic 30.0%
!!! AGTTAAACACTTTTTCACCT+AGG + chr5_4:6754856-6754875 None:intergenic 30.0%
! ATTCTCATGGGGTTTTTAAT+TGG + chr5_4:6754924-6754943 None:intergenic 30.0%
AATTCAATGGAATTCTCATG+GGG + chr5_4:6754935-6754954 None:intergenic 30.0%
CAATTCAATGGAATTCTCAT+GGG + chr5_4:6754936-6754955 None:intergenic 30.0%
TCAATTCAATGGAATTCTCA+TGG + chr5_4:6754937-6754956 None:intergenic 30.0%
GTATATGAACCAAATTGAGA+AGG - chr5_4:6754968-6754987 Msa0833660:intron 30.0%
GTATGTTTAATCACACACTT+AGG + chr5_4:6755137-6755156 None:intergenic 30.0%
! GAGTCTTGTAAATGAATGTT+TGG - chr5_4:6755207-6755226 Msa0833660:intron 30.0%
AGGAAATGAAAATGGTAGAA+AGG + chr5_4:6755422-6755441 None:intergenic 30.0%
TAAAAGGGAGGAAATGAAAA+TGG + chr5_4:6755430-6755449 None:intergenic 30.0%
CCCTTTAATTAGGAGTTTAT+AGG - chr5_4:6755466-6755485 Msa0833660:CDS 30.0%
ACTAAAACCCTAAAATATGC+GGG - chr5_4:6755598-6755617 Msa0833660:intron 30.0%
! TTAAGTTCCCGCATATTTTA+GGG + chr5_4:6755608-6755627 None:intergenic 30.0%
!! TTTAAGTTCCCGCATATTTT+AGG + chr5_4:6755609-6755628 None:intergenic 30.0%
GGATCGAAATGAAAATCTTA+TGG + chr5_4:6755735-6755754 None:intergenic 30.0%
!! CTTTTTCTGGGAGAATATTA+AGG + chr5_4:6755757-6755776 None:intergenic 30.0%
TAGTATCCAAAACATAACAG+CGG - chr5_4:6756145-6756164 Msa0833660:intron 30.0%
GATAGGAAGAGAAAAATCTA+AGG - chr5_4:6756343-6756362 Msa0833660:intron 30.0%
!! TTGTTGTTCTAGTTCTTTCT+TGG + chr5_4:6756644-6756663 None:intergenic 30.0%
AGAATACTTCGATCCAAATT+TGG - chr5_4:6756663-6756682 Msa0833660:intron 30.0%
TAATACTCTTTGAATTCAGG+TGG - chr5_4:6756933-6756952 Msa0833660:intron 30.0%
ATTCAGATAGCATAACCATA+AGG + chr5_4:6756960-6756979 None:intergenic 30.0%
TACTATAAGCCTGAAAGAAA+TGG + chr5_4:6757002-6757021 None:intergenic 30.0%
GAAAGAATATGAAAAGGCTT+TGG - chr5_4:6757149-6757168 Msa0833660:intron 30.0%
! TTCGAAGGTACATATCATAT+TGG - chr5_4:6757229-6757248 Msa0833660:intron 30.0%
GGAAATATTAAACACATTGC+AGG + chr5_4:6757263-6757282 None:intergenic 30.0%
ACAACTGAAATGGATATACA+TGG + chr5_4:6757318-6757337 None:intergenic 30.0%
AAATTAATAGAACCAGTCGT+GGG - chr5_4:6757345-6757364 Msa0833660:intron 30.0%
ATAAACACATCTTATTGCTG+TGG + chr5_4:6757594-6757613 None:intergenic 30.0%
TCCAGATGAAGTAAATTTGA+TGG - chr5_4:6757735-6757754 Msa0833660:CDS 30.0%
TCCATCAAATTTACTTCATC+TGG + chr5_4:6757739-6757758 None:intergenic 30.0%
GAAGTAAATTTGATGGAAGA+TGG - chr5_4:6757742-6757761 Msa0833660:CDS 30.0%
TTCCTATTGTGACTTTGATT+TGG - chr5_4:6757795-6757814 Msa0833660:CDS 30.0%
TACCAAATCAAAGTCACAAT+AGG + chr5_4:6757800-6757819 None:intergenic 30.0%
!! TTGTGACTTTGATTTGGTAT+TGG - chr5_4:6757801-6757820 Msa0833660:CDS 30.0%
! GATTTGGTATTGGAATAGAT+TGG - chr5_4:6757811-6757830 Msa0833660:CDS 30.0%
AGGTTCATTGCTTAGAAATT+AGG - chr5_4:6758083-6758102 Msa0833660:CDS 30.0%
TTGTTGAATAAACGAAAACG+GGG - chr5_4:6758129-6758148 Msa0833660:CDS 30.0%
ATAAGTTATCATGAGTGAGA+AGG - chr5_4:6758265-6758284 Msa0833660:CDS 30.0%
TTGAACAATTCAGTCAGAAA+AGG - chr5_4:6758401-6758420 Msa0833660:five_prime_UTR 30.0%
GTTAACTAGAGAGTTCTACT+AGG + chr5_4:6753491-6753510 None:intergenic 35.0%
! ACTTTGTTGATGTTGATTGG+GGG + chr5_4:6753575-6753594 None:intergenic 35.0%
TAGGAAGAAGAAGAAGAAAG+GGG + chr5_4:6753601-6753620 None:intergenic 35.0%
GATAGGAAGAAGAAGAAGAA+AGG + chr5_4:6753603-6753622 None:intergenic 35.0%
! TTGAAATCGAAAGGGTTTTG+GGG + chr5_4:6753633-6753652 None:intergenic 35.0%
! GTTGAAATCGAAAGGGTTTT+GGG + chr5_4:6753634-6753653 None:intergenic 35.0%
! AGTTGAAATCGAAAGGGTTT+TGG + chr5_4:6753635-6753654 None:intergenic 35.0%
! TTAAAGCGTCAGTGTAATTC+TGG + chr5_4:6753815-6753834 None:intergenic 35.0%
CTGTTTCAGCTTACAAGAAA+GGG - chr5_4:6753931-6753950 Msa0833660:three_prime_UTR 35.0%
TGAAGATAAACCCTAGTTGT+AGG + chr5_4:6754116-6754135 None:intergenic 35.0%
TGCATCATCTTCACAAAATC+AGG + chr5_4:6754143-6754162 None:intergenic 35.0%
! AGAGAGTTATGCAAGCTTTT+GGG - chr5_4:6754210-6754229 Msa0833660:exon 35.0%
AATGTTAAGATTGGAAGAGG+TGG - chr5_4:6754242-6754261 Msa0833660:CDS 35.0%
TAATGCTGCGTATAAGAAGA+AGG - chr5_4:6754448-6754467 Msa0833660:CDS 35.0%
TCTGCATTATTCGAAAGCTT+TGG - chr5_4:6754487-6754506 Msa0833660:intron 35.0%
TGTATACTTGGAAATGGGAA+AGG - chr5_4:6754553-6754572 Msa0833660:intron 35.0%
ACATGATAGCCTTCTCAATT+TGG + chr5_4:6754980-6754999 None:intergenic 35.0%
TTGAGAAGGCTATCATGTAT+TGG - chr5_4:6754982-6755001 Msa0833660:intron 35.0%
!! TTTGATTTGTTCCTGACACT+TGG - chr5_4:6755047-6755066 Msa0833660:CDS 35.0%
ATTCTTCAACATTTGGAGGA+CGG + chr5_4:6755301-6755320 None:intergenic 35.0%
!! AGTGAAGGCTTTGGATAAAA+GGG + chr5_4:6755445-6755464 None:intergenic 35.0%
!! TAGTGAAGGCTTTGGATAAA+AGG + chr5_4:6755446-6755465 None:intergenic 35.0%
TCCTAATTAAAGGGTAGTGA+AGG + chr5_4:6755460-6755479 None:intergenic 35.0%
AGGAGTTTATAGGAGAATGA+AGG - chr5_4:6755476-6755495 Msa0833660:CDS 35.0%
!!! GAATGAAGGAGAGTGTTTTT+TGG - chr5_4:6755490-6755509 Msa0833660:CDS 35.0%
GAAGAAAAATATGCCATGCA+AGG + chr5_4:6755573-6755592 None:intergenic 35.0%
ATAAACCAAAGTCAACCTTC+AGG + chr5_4:6755882-6755901 None:intergenic 35.0%
GTTAAAGGGTCATTTAACTC+CGG + chr5_4:6755956-6755975 None:intergenic 35.0%
TTTCAAGACTGCTGAGAATT+TGG - chr5_4:6755990-6756009 Msa0833660:intron 35.0%
TTCAAGACTGCTGAGAATTT+GGG - chr5_4:6755991-6756010 Msa0833660:intron 35.0%
!! TGATTTTCCAGCAGAGTATT+TGG - chr5_4:6756050-6756069 Msa0833660:intron 35.0%
! ACAAAACCGCTGTTATGTTT+TGG + chr5_4:6756154-6756173 None:intergenic 35.0%
! AAGCTTGTTTCAGTGTTTGA+TGG - chr5_4:6756179-6756198 Msa0833660:intron 35.0%
ATAGGATTAGGAAGATTTCC+TGG - chr5_4:6756243-6756262 Msa0833660:intron 35.0%
AGATTTCCTGGTGTTTGAAT+AGG - chr5_4:6756255-6756274 Msa0833660:intron 35.0%
TTGTATCCTATTCAAACACC+AGG + chr5_4:6756264-6756283 None:intergenic 35.0%
ATAGGATTAGGAAGATTTCC+TGG - chr5_4:6756243-6756262 Msa0833660:intron 35.0%
AGATTTCCTGGTGTTTGAAT+AGG - chr5_4:6756255-6756274 Msa0833660:intron 35.0%
CCTCATACTGAAAAGATTCA+AGG + chr5_4:6756405-6756424 None:intergenic 35.0%
! CCTTGAATCTTTTCAGTATG+AGG - chr5_4:6756402-6756421 Msa0833660:intron 35.0%
! TTTTGGTAAGTCTCAATGAC+AGG + chr5_4:6756562-6756581 None:intergenic 35.0%
AGCTTCATTGAGTTTCTTCA+GGG + chr5_4:6756614-6756633 None:intergenic 35.0%
TATGAAAACCTTGTCTTGCA+GGG - chr5_4:6756822-6756841 Msa0833660:intron 35.0%
GTGTAATGCTTAATAGCTTC+AGG + chr5_4:6756875-6756894 None:intergenic 35.0%
AAGAAACCCGAAAAATCCTA+AGG - chr5_4:6756907-6756926 Msa0833660:intron 35.0%
CTATCTGAATCCTAACAAGT+TGG - chr5_4:6756970-6756989 Msa0833660:intron 35.0%
! ATGGAGTATTCCAACTTGTT+AGG + chr5_4:6756983-6757002 None:intergenic 35.0%
TGGAATACTCCATTTCTTTC+AGG - chr5_4:6756990-6757009 Msa0833660:intron 35.0%
TTTGCTTCACACAACTGAAA+TGG + chr5_4:6757328-6757347 None:intergenic 35.0%
CAAATTAATAGAACCAGTCG+TGG - chr5_4:6757344-6757363 Msa0833660:intron 35.0%
AATTAATAGAACCAGTCGTG+GGG - chr5_4:6757346-6757365 Msa0833660:intron 35.0%
!!! GACAGGTTTGCTTTTTTTCT+TGG - chr5_4:6757543-6757562 Msa0833660:CDS 35.0%
TGATTTCCAGGAAAATCCAA+AGG - chr5_4:6757643-6757662 Msa0833660:CDS 35.0%
TTACTTCATCTGGACAATTC+CGG + chr5_4:6757729-6757748 None:intergenic 35.0%
! GGTATTGGAATAGATTGGAT+TGG - chr5_4:6757816-6757835 Msa0833660:CDS 35.0%
! TGGATTGGAAGTACAATAGT+TGG - chr5_4:6757831-6757850 Msa0833660:CDS 35.0%
! GGATTGGAAGTACAATAGTT+GGG - chr5_4:6757832-6757851 Msa0833660:CDS 35.0%
!! GTATGTCTTGTGTTTGTTGT+AGG - chr5_4:6758306-6758325 Msa0833660:five_prime_UTR 35.0%
!!! GTTTGTTGTAGGCAGTATTT+TGG - chr5_4:6758317-6758336 Msa0833660:five_prime_UTR 35.0%
TCCTCATTGAACAATTGAGT+CGG - chr5_4:6758351-6758370 Msa0833660:five_prime_UTR 35.0%
!!! AAAAGGAGTTTTGCTGATTC+TGG - chr5_4:6758418-6758437 Msa0833660:five_prime_UTR 35.0%
GATCGGAGTTGAAATCGAAA+GGG + chr5_4:6753641-6753660 None:intergenic 40.0%
AGATCGGAGTTGAAATCGAA+AGG + chr5_4:6753642-6753661 None:intergenic 40.0%
TTTCAACTCCGATCTATCCA+TGG - chr5_4:6753647-6753666 Msa0833660:three_prime_UTR 40.0%
! TTCGACGGTTTTCTTTGCAT+CGG + chr5_4:6753838-6753857 None:intergenic 40.0%
! ACTCAAACCTGATTGGTCAA+AGG - chr5_4:6753857-6753876 Msa0833660:three_prime_UTR 40.0%
! CTCAAACCTGATTGGTCAAA+GGG - chr5_4:6753858-6753877 Msa0833660:three_prime_UTR 40.0%
TTGAGAAAGACCAAGATGAG+CGG + chr5_4:6753901-6753920 None:intergenic 40.0%
! GCTGTTTCAGCTTACAAGAA+AGG - chr5_4:6753930-6753949 Msa0833660:three_prime_UTR 40.0%
TCGGCTAAACCTGATTTCAA+GGG + chr5_4:6753981-6754000 None:intergenic 40.0%
ATCGGCTAAACCTGATTTCA+AGG + chr5_4:6753982-6754001 None:intergenic 40.0%
!! AAAAGCATCACCAAACGGAT+TGG + chr5_4:6754057-6754076 None:intergenic 40.0%
!! CCAGAAAAAGCATCACCAAA+CGG + chr5_4:6754062-6754081 None:intergenic 40.0%
TTACTGCTGATCCTACAACT+AGG - chr5_4:6754102-6754121 Msa0833660:three_prime_UTR 40.0%
TACTGCTGATCCTACAACTA+GGG - chr5_4:6754103-6754122 Msa0833660:three_prime_UTR 40.0%
! CAGAGAGTTATGCAAGCTTT+TGG - chr5_4:6754209-6754228 Msa0833660:exon 40.0%
! GAGAGTTATGCAAGCTTTTG+GGG - chr5_4:6754211-6754230 Msa0833660:exon 40.0%
!! AGCTTTGGAATTGGATGATG+AGG - chr5_4:6754502-6754521 Msa0833660:intron 40.0%
TTTCCAAGTATACAGCAGCA+CGG + chr5_4:6754547-6754566 None:intergenic 40.0%
TGCTGCTGTATACTTGGAAA+TGG - chr5_4:6754547-6754566 Msa0833660:intron 40.0%
GCTGCTGTATACTTGGAAAT+GGG - chr5_4:6754548-6754567 Msa0833660:intron 40.0%
ACTGTGCTATCTCTATGCAA+AGG - chr5_4:6754766-6754785 Msa0833660:CDS 40.0%
CTGTGCTATCTCTATGCAAA+GGG - chr5_4:6754767-6754786 Msa0833660:CDS 40.0%
ACCTAGGGAAAAAGTTGAAC+AGG + chr5_4:6754840-6754859 None:intergenic 40.0%
ATGAGAGAACTCGGACAATT+TGG + chr5_4:6755339-6755358 None:intergenic 40.0%
! TTGTCCGAGTTCTCTCATTT+TGG - chr5_4:6755341-6755360 Msa0833660:CDS 40.0%
!! TCTCTCATTTTGGAGGGATT+TGG - chr5_4:6755351-6755370 Msa0833660:CDS 40.0%
! ATTAACTGCCCATTCGAGTT+AGG - chr5_4:6755388-6755407 Msa0833660:CDS 40.0%
! TTAACTGCCCATTCGAGTTA+GGG - chr5_4:6755389-6755408 Msa0833660:CDS 40.0%
TTAAAGGGTAGTGAAGGCTT+TGG + chr5_4:6755454-6755473 None:intergenic 40.0%
GCCTTCACTACCCTTTAATT+AGG - chr5_4:6755456-6755475 Msa0833660:CDS 40.0%
AAAATATGCCATGCAAGGTG+AGG + chr5_4:6755568-6755587 None:intergenic 40.0%
CGGGAACTTAAAAATGCACT+GGG - chr5_4:6755617-6755636 Msa0833660:intron 40.0%
!!! GACTTTGAAGGGTGTTTTAG+AGG - chr5_4:6755644-6755663 Msa0833660:intron 40.0%
!!! GGAGCATCTTCACTTTTTCT+GGG + chr5_4:6755769-6755788 None:intergenic 40.0%
!!! AGGAGCATCTTCACTTTTTC+TGG + chr5_4:6755770-6755789 None:intergenic 40.0%
!! GTAGCCTTAAGGCTTTGAAT+GGG + chr5_4:6755853-6755872 None:intergenic 40.0%
ATCGTGGAATCTAATCACAC+CGG - chr5_4:6755934-6755953 Msa0833660:intron 40.0%
GGATACTAAGTGCAATAAGC+AGG + chr5_4:6756133-6756152 None:intergenic 40.0%
TCCTGGTGTTTGAATAGGAT+AGG - chr5_4:6756260-6756279 Msa0833660:intron 40.0%
TCCTATCCTATTCAAACACC+AGG + chr5_4:6756330-6756349 None:intergenic 40.0%
TGTGATAAGGCTGTTGAAAG+AGG - chr5_4:6756439-6756458 Msa0833660:intron 40.0%
! TGATAGCAAGAGCTTTGACA+AGG - chr5_4:6756488-6756507 Msa0833660:intron 40.0%
CAGCTTCATTGAGTTTCTTC+AGG + chr5_4:6756615-6756634 None:intergenic 40.0%
GAAACTCAATGAAGCTGAGA+AGG - chr5_4:6756618-6756637 Msa0833660:intron 40.0%
ATCTCTTAGTCTGATCTTCC+AGG - chr5_4:6756712-6756731 Msa0833660:intron 40.0%
ATAATGTGGAAATAGAGGCC+AGG + chr5_4:6756765-6756784 None:intergenic 40.0%
GTATGAAAACCTTGTCTTGC+AGG - chr5_4:6756821-6756840 Msa0833660:intron 40.0%
TATTCATTCCCTGCAAGACA+AGG + chr5_4:6756833-6756852 None:intergenic 40.0%
TTGAATTCAGGTGGTCCTTA+TGG - chr5_4:6756942-6756961 Msa0833660:intron 40.0%
AGCTGCATGTTACACAAAAC+TGG - chr5_4:6757026-6757045 Msa0833660:intron 40.0%
GCTGCATGTTACACAAAACT+GGG - chr5_4:6757027-6757046 Msa0833660:intron 40.0%
CTGCATGTTACACAAAACTG+GGG - chr5_4:6757028-6757047 Msa0833660:intron 40.0%
TGCATGTTACACAAAACTGG+GGG - chr5_4:6757029-6757048 Msa0833660:intron 40.0%
TCTGCATCCTTTAAACCTTC+AGG + chr5_4:6757060-6757079 None:intergenic 40.0%
!! AAAGGCTTTGGAAACATACC+AGG - chr5_4:6757161-6757180 Msa0833660:intron 40.0%
! CTTTGGAAACATACCAGGAA+GGG - chr5_4:6757166-6757185 Msa0833660:intron 40.0%
GAAACATGATGCAAACAACC+AGG - chr5_4:6757191-6757210 Msa0833660:intron 40.0%
AACAACCAGGAATTGCTTGA+AGG - chr5_4:6757204-6757223 Msa0833660:intron 40.0%
ACAACCAGGAATTGCTTGAA+GGG - chr5_4:6757205-6757224 Msa0833660:intron 40.0%
TTGCAGCCAAAAAAGGAAAC+TGG + chr5_4:6757284-6757303 None:intergenic 40.0%
! ACATGACTTGCAGCCAAAAA+AGG + chr5_4:6757291-6757310 None:intergenic 40.0%
TGTAACTCCTGAAGAGTTGA+AGG - chr5_4:6757370-6757389 Msa0833660:intron 40.0%
! TGAAGGATGTTCTGAATCTC+TGG + chr5_4:6757509-6757528 None:intergenic 40.0%
AGCAAACCTGTCTCATAACA+GGG + chr5_4:6757535-6757554 None:intergenic 40.0%
AAGCAAACCTGTCTCATAAC+AGG + chr5_4:6757536-6757555 None:intergenic 40.0%
!! TAATGGTTGGCTTTGTATGC+AGG - chr5_4:6757613-6757632 Msa0833660:CDS 40.0%
!! TTGGCTTTGTATGCAGGTAT+TGG - chr5_4:6757619-6757638 Msa0833660:CDS 40.0%
AGCTCTTGCGAAAAAGCAAT+TGG - chr5_4:6757766-6757785 Msa0833660:CDS 40.0%
TGCGTTTACAATGCAGTAAC+AGG - chr5_4:6758013-6758032 Msa0833660:CDS 40.0%
! GAACCTTTTCTTGCAAAGAG+AGG + chr5_4:6758069-6758088 None:intergenic 40.0%
TAGGTGCAAGTGTAATGTTG+TGG - chr5_4:6758102-6758121 Msa0833660:CDS 40.0%
ATAAACGAAAACGGGGAAAG+TGG - chr5_4:6758136-6758155 Msa0833660:CDS 40.0%
! TTTAGAGCAACGACCTTGAT+GGG + chr5_4:6758246-6758265 None:intergenic 40.0%
! ATTTAGAGCAACGACCTTGA+TGG + chr5_4:6758247-6758266 None:intergenic 40.0%
! ACCGACTCAATTGTTCAATG+AGG + chr5_4:6758355-6758374 None:intergenic 40.0%
AGAGAGTTCTACTAGGGTCT+GGG + chr5_4:6753484-6753503 None:intergenic 45.0%
TAGAGAGTTCTACTAGGGTC+TGG + chr5_4:6753485-6753504 None:intergenic 45.0%
!! GAGAGAGTGGGTTAGGTTAT+AGG + chr5_4:6753525-6753544 None:intergenic 45.0%
AGAGAGGATAGAGAGAGAGT+GGG + chr5_4:6753537-6753556 None:intergenic 45.0%
AAGAGAGGATAGAGAGAGAG+TGG + chr5_4:6753538-6753557 None:intergenic 45.0%
GAGAGTGAGGAATTGAAGAG+AGG + chr5_4:6753553-6753572 None:intergenic 45.0%
!!! GGTTTTGGGGATTTTGCGAT+AGG + chr5_4:6753620-6753639 None:intergenic 45.0%
TGATGGCATCTGAGAAGTGA+CGG + chr5_4:6753734-6753753 None:intergenic 45.0%
ATTGGTGGGGGAAAGATTGA+TGG + chr5_4:6753751-6753770 None:intergenic 45.0%
AATACAGGACGTGATTGGTG+GGG + chr5_4:6753764-6753783 None:intergenic 45.0%
GAATACAGGACGTGATTGGT+GGG + chr5_4:6753765-6753784 None:intergenic 45.0%
GTTGGAATACAGGACGTGAT+TGG + chr5_4:6753769-6753788 None:intergenic 45.0%
! CCAATCAGGTTTGAGTTCGA+CGG + chr5_4:6753853-6753872 None:intergenic 45.0%
CTGTAACCCTTTGACCAATC+AGG + chr5_4:6753867-6753886 None:intergenic 45.0%
!!! CCGTTTGGTGATGCTTTTTC+TGG - chr5_4:6754059-6754078 Msa0833660:three_prime_UTR 45.0%
!!! TGGTGATGCTTTTTCTGGAC+CGG - chr5_4:6754064-6754083 Msa0833660:three_prime_UTR 45.0%
! TTTTTCTGGACCGGAGATGT+GGG - chr5_4:6754073-6754092 Msa0833660:three_prime_UTR 45.0%
! TAACCGTGCTGCTGTATACT+TGG - chr5_4:6754541-6754560 Msa0833660:intron 45.0%
!! GCCTGTTCAACTTTTTCCCT+AGG - chr5_4:6754836-6754855 Msa0833660:CDS 45.0%
TTGTTCCTGACACTTGGAAG+TGG - chr5_4:6755053-6755072 Msa0833660:CDS 45.0%
TATCACCACTTCCAAGTGTC+AGG + chr5_4:6755061-6755080 None:intergenic 45.0%
AACTCGGACAATTTGGAGGA+GGG + chr5_4:6755332-6755351 None:intergenic 45.0%
AGAGAACTCGGACAATTTGG+AGG + chr5_4:6755336-6755355 None:intergenic 45.0%
! TCCGAGTTCTCTCATTTTGG+AGG - chr5_4:6755344-6755363 Msa0833660:CDS 45.0%
CCCTCCAAAATGAGAGAACT+CGG + chr5_4:6755348-6755367 None:intergenic 45.0%
! CCGAGTTCTCTCATTTTGGA+GGG - chr5_4:6755345-6755364 Msa0833660:CDS 45.0%
! TAACTGCCCATTCGAGTTAG+GGG - chr5_4:6755390-6755409 Msa0833660:CDS 45.0%
ATAGTCCCCCTAACTCGAAT+GGG + chr5_4:6755399-6755418 None:intergenic 45.0%
!! GAAGGCTTTGGATAAAAGGG+AGG + chr5_4:6755442-6755461 None:intergenic 45.0%
GCGGGAACTTAAAAATGCAC+TGG - chr5_4:6755616-6755635 Msa0833660:intron 45.0%
CACTGGGAGAAGACTTTGAA+GGG - chr5_4:6755633-6755652 Msa0833660:intron 45.0%
GTCTCCCATTCAAAGCCTTA+AGG - chr5_4:6755846-6755865 Msa0833660:intron 45.0%
!! GGTAGCCTTAAGGCTTTGAA+TGG + chr5_4:6755854-6755873 None:intergenic 45.0%
TCAAAGCCTTAAGGCTACCT+TGG - chr5_4:6755855-6755874 Msa0833660:intron 45.0%
AAAGTCAACCTTCAGGACCA+AGG + chr5_4:6755875-6755894 None:intergenic 45.0%
! TTGGTCCTGAAGGTTGACTT+TGG - chr5_4:6755874-6755893 Msa0833660:intron 45.0%
! GCAAGAGCTTTGACAAGGAA+AGG - chr5_4:6756493-6756512 Msa0833660:intron 45.0%
ACAAGGAAAGGAACTGCCAT+GGG - chr5_4:6756505-6756524 Msa0833660:intron 45.0%
AGGAACTGCCATGGGTAAAA+CGG - chr5_4:6756513-6756532 Msa0833660:intron 45.0%
!!! GCATTTTGCCGTTTTACCCA+TGG + chr5_4:6756524-6756543 None:intergenic 45.0%
! TGAGTTTCTTCAGGGTGTCT+GGG + chr5_4:6756606-6756625 None:intergenic 45.0%
! TTGAGTTTCTTCAGGGTGTC+TGG + chr5_4:6756607-6756626 None:intergenic 45.0%
CGATCCAAATTTGGCTGATG+AGG - chr5_4:6756672-6756691 Msa0833660:intron 45.0%
CTCTCCTCATCAGCCAAATT+TGG + chr5_4:6756679-6756698 None:intergenic 45.0%
GCTGATGAGGAGAGAGAAAA+AGG - chr5_4:6756685-6756704 Msa0833660:intron 45.0%
GGCAATGCCTGAAGGTTTAA+AGG - chr5_4:6757050-6757069 Msa0833660:intron 45.0%
TATAACCCTTGGTGAAGGTC+GGG + chr5_4:6757101-6757120 None:intergenic 45.0%
GTATAACCCTTGGTGAAGGT+CGG + chr5_4:6757102-6757121 None:intergenic 45.0%
!! GCTTTGGAAACATACCAGGA+AGG - chr5_4:6757165-6757184 Msa0833660:intron 45.0%
CATCATGTTTCAACCCTTCC+TGG + chr5_4:6757182-6757201 None:intergenic 45.0%
CAACCAGGAATTGCTTGAAG+GGG - chr5_4:6757206-6757225 Msa0833660:intron 45.0%
AATTGCTTGAAGGGGTTCGA+AGG - chr5_4:6757214-6757233 Msa0833660:intron 45.0%
TGTCTCTCCTTCAACTCTTC+AGG + chr5_4:6757380-6757399 None:intergenic 45.0%
TGAAGAGTTGAAGGAGAGAC+AGG - chr5_4:6757379-6757398 Msa0833660:intron 45.0%
GTCTCATAACAGGGTCTTGA+AGG + chr5_4:6757526-6757545 None:intergenic 45.0%
TCAAGACCCTGTTATGAGAC+AGG - chr5_4:6757526-6757545 Msa0833660:CDS 45.0%
!! GCAGGTATTGGTTGATTTCC+AGG - chr5_4:6757631-6757650 Msa0833660:CDS 45.0%
ACAGGAACATACCAAGAACC+CGG - chr5_4:6757670-6757689 Msa0833660:CDS 45.0%
ATCCAAAAGCTGATCAGTGC+CGG - chr5_4:6757707-6757726 Msa0833660:CDS 45.0%
GTCGTGTGCATGCTTTCAAT+TGG - chr5_4:6757939-6757958 Msa0833660:CDS 45.0%
GCACCTCTCTTTGCAAGAAA+AGG - chr5_4:6758063-6758082 Msa0833660:CDS 45.0%
! TTCTACTAGGGTCTGGGGTT+GGG + chr5_4:6753478-6753497 None:intergenic 50.0%
GAGAGTTCTACTAGGGTCTG+GGG + chr5_4:6753483-6753502 None:intergenic 50.0%
! GGATAGAGAGAGAGTGGGTT+AGG + chr5_4:6753532-6753551 None:intergenic 50.0%
! ATGTTGATTGGGGGAGAGTG+AGG + chr5_4:6753566-6753585 None:intergenic 50.0%
TTCGTCGGCCATGGATAGAT+CGG + chr5_4:6753658-6753677 None:intergenic 50.0%
!! GCCTTTGGCTTTAGCTTCGT+CGG + chr5_4:6753673-6753692 None:intergenic 50.0%
!! ATCTGAGAAGTGACGGATGG+CGG + chr5_4:6753727-6753746 None:intergenic 50.0%
ATACAGGACGTGATTGGTGG+GGG + chr5_4:6753763-6753782 None:intergenic 50.0%
GGAATACAGGACGTGATTGG+TGG + chr5_4:6753766-6753785 None:intergenic 50.0%
CCGTCGAACTCAAACCTGAT+TGG - chr5_4:6753850-6753869 Msa0833660:three_prime_UTR 50.0%
TCAAAGGGTTACAGCCGTCT+CGG - chr5_4:6753873-6753892 Msa0833660:three_prime_UTR 50.0%
! CTTTTTCTGGACCGGAGATG+TGG - chr5_4:6754072-6754091 Msa0833660:three_prime_UTR 50.0%
GTAAGTTTCGCCCACATCTC+CGG + chr5_4:6754086-6754105 None:intergenic 50.0%
! TGGAAGAGGTGGTGATGATG+TGG - chr5_4:6754253-6754272 Msa0833660:CDS 50.0%
AGGAGAAGGAAGTGAAGCAG+AGG - chr5_4:6754393-6754412 Msa0833660:intron 50.0%
GAAGGAAGTGAAGCAGAGGA+AGG - chr5_4:6754397-6754416 Msa0833660:intron 50.0%
ATACAGCAGCACGGTTAGTG+AGG + chr5_4:6754538-6754557 None:intergenic 50.0%
GAACTCGGACAATTTGGAGG+AGG + chr5_4:6755333-6755352 None:intergenic 50.0%
! AACTGCCCATTCGAGTTAGG+GGG - chr5_4:6755391-6755410 Msa0833660:CDS 50.0%
GATAGTCCCCCTAACTCGAA+TGG + chr5_4:6755400-6755419 None:intergenic 50.0%
! ACTAGTCTCCTCACCTTGCA+TGG - chr5_4:6755557-6755576 Msa0833660:intron 50.0%
GCACTGGGAGAAGACTTTGA+AGG - chr5_4:6755632-6755651 Msa0833660:intron 50.0%
AGACTAGAGAGAGAGAGGGA+GGG + chr5_4:6755830-6755849 None:intergenic 50.0%
TGGGAGACTAGAGAGAGAGA+GGG + chr5_4:6755834-6755853 None:intergenic 50.0%
ATGGGAGACTAGAGAGAGAG+AGG + chr5_4:6755835-6755854 None:intergenic 50.0%
! TCAGGACCAAGGTAGCCTTA+AGG + chr5_4:6755864-6755883 None:intergenic 50.0%
TAAGGCTACCTTGGTCCTGA+AGG - chr5_4:6755864-6755883 Msa0833660:intron 50.0%
GAGGATGCCAAATACTCTGC+TGG + chr5_4:6756060-6756079 None:intergenic 50.0%
GACAAGGAAAGGAACTGCCA+TGG - chr5_4:6756504-6756523 Msa0833660:intron 50.0%
! GGTGCTCTGTAAGCGCTTTT+TGG + chr5_4:6756579-6756598 None:intergenic 50.0%
! TCTTCAGGGTGTCTGGGTTA+CGG + chr5_4:6756600-6756619 None:intergenic 50.0%
CTTGCAGGAAATGAAGAGCC+TGG + chr5_4:6756733-6756752 None:intergenic 50.0%
TGGAAATAGAGGCCAGGAGA+AGG + chr5_4:6756759-6756778 None:intergenic 50.0%
CCTTCACCAAGGGTTATACC+CGG - chr5_4:6757103-6757122 Msa0833660:intron 50.0%
ACCAAGGGTTATACCCGGAA+GGG - chr5_4:6757108-6757127 Msa0833660:intron 50.0%
AAAACTGAACCGCACCCTTC+CGG + chr5_4:6757125-6757144 None:intergenic 50.0%
GAACCCCTTCAAGCAATTCC+TGG + chr5_4:6757212-6757231 None:intergenic 50.0%
! GTGCAGCCTTTGGATTTTCC+TGG + chr5_4:6757652-6757671 None:intergenic 50.0%
GGAAAATCCAAAGGCTGCAC+AGG - chr5_4:6757652-6757671 Msa0833660:CDS 50.0%
GTATGTTCCTGTGCAGCCTT+TGG + chr5_4:6757662-6757681 None:intergenic 50.0%
CAGGAACATACCAAGAACCC+GGG - chr5_4:6757671-6757690 Msa0833660:CDS 50.0%
TGGATCTTGTCCATCACACC+CGG + chr5_4:6757692-6757711 None:intergenic 50.0%
!!! TTCCGGCACTGATCAGCTTT+TGG + chr5_4:6757712-6757731 None:intergenic 50.0%
CAGGCAATACGAGTCTCTGT+AGG - chr5_4:6758032-6758051 Msa0833660:CDS 50.0%
!! ATGTCGAGCTGCTTGCTATG+AGG - chr5_4:6758168-6758187 Msa0833660:CDS 50.0%
! TCTACTAGGGTCTGGGGTTG+GGG + chr5_4:6753477-6753496 None:intergenic 55.0%
! GTTCTACTAGGGTCTGGGGT+TGG + chr5_4:6753479-6753498 None:intergenic 55.0%
GCCGACGAAGCTAAAGCCAA+AGG - chr5_4:6753669-6753688 Msa0833660:three_prime_UTR 55.0%
GGAGAATGCAGCGTTGCCTT+TGG + chr5_4:6753688-6753707 None:intergenic 55.0%
! GGCATCTGAGAAGTGACGGA+TGG + chr5_4:6753730-6753749 None:intergenic 55.0%
CAGCGGATCGGTTGGAATAC+AGG + chr5_4:6753779-6753798 None:intergenic 55.0%
AGCCGATGCTCAAAAAGCCG+CGG - chr5_4:6753995-6754014 Msa0833660:three_prime_UTR 55.0%
!! TCACCAAACGGATTGGCACC+CGG + chr5_4:6754050-6754069 None:intergenic 55.0%
GCCTGATATGCCGTCCAGTT+CGG - chr5_4:6754280-6754299 Msa0833660:CDS 55.0%
TCCGAACTGGACGGCATATC+AGG + chr5_4:6754284-6754303 None:intergenic 55.0%
ATATGCCGTCCAGTTCGGAG+AGG - chr5_4:6754285-6754304 Msa0833660:CDS 55.0%
CTCTTCCTCTCCGAACTGGA+CGG + chr5_4:6754293-6754312 None:intergenic 55.0%
AGCTCTCTTCCTCTCCGAAC+TGG + chr5_4:6754297-6754316 None:intergenic 55.0%
GAAGAGAGCTGCTGAACCTG+AGG - chr5_4:6754307-6754326 Msa0833660:CDS 55.0%
TGAACCTGAGGTGGCAAAGC+AGG - chr5_4:6754319-6754338 Msa0833660:intron 55.0%
TCATCAGCCACCTCCTCCAT+TGG + chr5_4:6754374-6754393 None:intergenic 55.0%
AATGGAGGAGGTGGCTGATG+AGG - chr5_4:6754373-6754392 Msa0833660:intron 55.0%
AGTGAAGCAGAGGAAGGCTG+AGG - chr5_4:6754403-6754422 Msa0833660:intron 55.0%
AGCAGCACGGTTAGTGAGGA+AGG + chr5_4:6754534-6754553 None:intergenic 55.0%
GACTAGAGAGAGAGAGGGAG+GGG + chr5_4:6755829-6755848 None:intergenic 55.0%
GAGACTAGAGAGAGAGAGGG+AGG + chr5_4:6755831-6755850 None:intergenic 55.0%
TCCTGCAAGCATCCTTCTCC+TGG - chr5_4:6756744-6756763 Msa0833660:intron 55.0%
AAACTGGGGGCAATGCCTGA+AGG - chr5_4:6757042-6757061 Msa0833660:intron 55.0%
CTTGACCCGACCTTCACCAA+GGG - chr5_4:6757093-6757112 Msa0833660:intron 55.0%
CCGGGTATAACCCTTGGTGA+AGG + chr5_4:6757106-6757125 None:intergenic 55.0%
CACCAAGGGTTATACCCGGA+AGG - chr5_4:6757107-6757126 Msa0833660:intron 55.0%
ACCCTTCCGGGTATAACCCT+TGG + chr5_4:6757112-6757131 None:intergenic 55.0%
AAACTGAACCGCACCCTTCC+GGG + chr5_4:6757124-6757143 None:intergenic 55.0%
AGGAGTTACATCCCCACGAC+TGG + chr5_4:6757360-6757379 None:intergenic 55.0%
TACCAAGAACCCGGGTGTGA+TGG - chr5_4:6757679-6757698 Msa0833660:CDS 55.0%
GGATCTTGTCCATCACACCC+GGG + chr5_4:6757691-6757710 None:intergenic 55.0%
! GGCTTTAGCTTCGTCGGCCA+TGG + chr5_4:6753667-6753686 None:intergenic 60.0%
GGCAACGCTGCATTCTCCTC+CGG - chr5_4:6753690-6753709 Msa0833660:three_prime_UTR 60.0%
! GATGGCGGTTGCGAAATCGC+CGG + chr5_4:6753712-6753731 None:intergenic 60.0%
! GAGAAGCGTGAGCAGCGGAT+CGG + chr5_4:6753791-6753810 None:intergenic 60.0%
! CTGGAGAGAAGCGTGAGCAG+CGG + chr5_4:6753796-6753815 None:intergenic 60.0%
! CAAGATGAGCGGCACCGAGA+CGG + chr5_4:6753890-6753909 None:intergenic 60.0%
!! CGCCGCGGCTTTTTGAGCAT+CGG + chr5_4:6754000-6754019 None:intergenic 60.0%
CGATGCTCAAAAAGCCGCGG+CGG - chr5_4:6753998-6754017 Msa0833660:three_prime_UTR 60.0%
CCTAGAAAAACTCGCCGCCG+CGG + chr5_4:6754015-6754034 None:intergenic 60.0%
TTCTAGGCCACGTTCTGCGC+CGG - chr5_4:6754028-6754047 Msa0833660:three_prime_UTR 60.0%
GAGAGCTGCTGAACCTGAGG+TGG - chr5_4:6754310-6754329 Msa0833660:CDS 60.0%
ACCTGAGGTGGCAAAGCAGG+CGG - chr5_4:6754322-6754341 Msa0833660:intron 60.0%
!! TCCTCCATTGGCTCCGGTTC+CGG + chr5_4:6754362-6754381 None:intergenic 60.0%
GGAGGTGGCTGATGAGGAGA+AGG - chr5_4:6754379-6754398 Msa0833660:intron 60.0%
TGAGGCGCAGAAGGAGAAGG+AGG - chr5_4:6754421-6754440 Msa0833660:intron 60.0%
GGGCGAAGGGGGTAGAGAAT+AGG + chr5_4:6755790-6755809 None:intergenic 60.0%
AGAGAGAGAGAGGGAGGGGA+CGG + chr5_4:6755825-6755844 None:intergenic 60.0%
GCCAGGAGAAGGATGCTTGC+AGG + chr5_4:6756748-6756767 None:intergenic 60.0%
GCTTGACCCGACCTTCACCA+AGG - chr5_4:6757092-6757111 Msa0833660:intron 60.0%
GGGTTATACCCGGAAGGGTG+CGG - chr5_4:6757113-6757132 Msa0833660:intron 60.0%
GTCCATCACACCCGGGTTCT+TGG + chr5_4:6757684-6757703 None:intergenic 60.0%
AGCGTGAGCAGCGGATCGGT+TGG + chr5_4:6753787-6753806 None:intergenic 65.0%
!! CGTCTCGGTGCCGCTCATCT+TGG - chr5_4:6753888-6753907 Msa0833660:three_prime_UTR 65.0%
! CCGCGGCGGCGAGTTTTTCT+AGG - chr5_4:6754012-6754031 Msa0833660:three_prime_UTR 65.0%
TCTAGGCCACGTTCTGCGCC+GGG - chr5_4:6754029-6754048 Msa0833660:three_prime_UTR 65.0%
TCCGCCTGCTTTGCCACCTC+AGG + chr5_4:6754326-6754345 None:intergenic 65.0%
TGAGGTGGCAAAGCAGGCGG+AGG - chr5_4:6754325-6754344 Msa0833660:intron 65.0%
GGTTGAGCCTGAGCCGGAAC+CGG - chr5_4:6754346-6754365 Msa0833660:intron 65.0%
! ATTGGCTCCGGTTCCGGCTC+AGG + chr5_4:6754356-6754375 None:intergenic 65.0%
TGAGCCGGAACCGGAGCCAA+TGG - chr5_4:6754355-6754374 Msa0833660:intron 65.0%
GGAACCGGAGCCAATGGAGG+AGG - chr5_4:6754361-6754380 Msa0833660:intron 65.0%
ACCGGAGCCAATGGAGGAGG+TGG - chr5_4:6754364-6754383 Msa0833660:intron 65.0%
!! GCCACCTCCTCCATTGGCTC+CGG + chr5_4:6754368-6754387 None:intergenic 65.0%
GAGGAAGGCTGAGGCGCAGA+AGG - chr5_4:6754412-6754431 Msa0833660:intron 65.0%
GGCTGAGGCGCAGAAGGAGA+AGG - chr5_4:6754418-6754437 Msa0833660:intron 65.0%
GCGCAGAAGGAGAAGGAGGC+TGG - chr5_4:6754425-6754444 Msa0833660:CDS 65.0%
!! GAAGGGCTTTGGGGCGAAGG+GGG + chr5_4:6755801-6755820 None:intergenic 65.0%
!! CGAAGGGCTTTGGGGCGAAG+GGG + chr5_4:6755802-6755821 None:intergenic 65.0%
!! GCGAAGGGCTTTGGGGCGAA+GGG + chr5_4:6755803-6755822 None:intergenic 65.0%
AGGGGACGGCGAAGGGCTTT+GGG + chr5_4:6755811-6755830 None:intergenic 65.0%
GGCGGTTGCGAAATCGCCGG+AGG + chr5_4:6753709-6753728 None:intergenic 70.0%
TTGGCACCCGGCGCAGAACG+TGG + chr5_4:6754038-6754057 None:intergenic 70.0%
GCGCCGGGTGCCAATCCGTT+TGG - chr5_4:6754044-6754063 Msa0833660:three_prime_UTR 70.0%
GGCGGAGGTTGAGCCTGAGC+CGG - chr5_4:6754340-6754359 Msa0833660:intron 70.0%
GCCGGAACCGGAGCCAATGG+AGG - chr5_4:6754358-6754377 Msa0833660:intron 70.0%
!! GGCGAAGGGCTTTGGGGCGA+AGG + chr5_4:6755804-6755823 None:intergenic 70.0%
GGGGACGGCGAAGGGCTTTG+GGG + chr5_4:6755810-6755829 None:intergenic 70.0%
GAGGGGACGGCGAAGGGCTT+TGG + chr5_4:6755812-6755831 None:intergenic 70.0%
GAGAGGGAGGGGACGGCGAA+GGG + chr5_4:6755818-6755837 None:intergenic 70.0%
AGAGAGGGAGGGGACGGCGA+AGG + chr5_4:6755819-6755838 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 6753471 6758500 6753471 ID=Msa0833660;Name=Msa0833660
chr5_4 mRNA 6753471 6758500 6753471 ID=Msa0833660-mRNA-1;Parent=Msa0833660;Name=Msa0833660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=195|1|1|1|1|1|7|752|582
chr5_4 exon 6753471 6754336 6753471 ID=Msa0833660-mRNA-1:exon:2975;Parent=Msa0833660-mRNA-1
chr5_4 exon 6754424 6754483 6754424 ID=Msa0833660-mRNA-1:exon:2974;Parent=Msa0833660-mRNA-1
chr5_4 exon 6754571 6754637 6754571 ID=Msa0833660-mRNA-1:exon:2973;Parent=Msa0833660-mRNA-1
chr5_4 exon 6754736 6754959 6754736 ID=Msa0833660-mRNA-1:exon:2972;Parent=Msa0833660-mRNA-1
chr5_4 exon 6755043 6755128 6755043 ID=Msa0833660-mRNA-1:exon:2971;Parent=Msa0833660-mRNA-1
chr5_4 exon 6755265 6755553 6755265 ID=Msa0833660-mRNA-1:exon:2970;Parent=Msa0833660-mRNA-1
chr5_4 exon 6757397 6758500 6757397 ID=Msa0833660-mRNA-1:exon:2969;Parent=Msa0833660-mRNA-1
chr5_4 five_prime_UTR 6758306 6758500 6758306 ID=Msa0833660-mRNA-1:five_prime_utr;Parent=Msa0833660-mRNA-1
chr5_4 CDS 6757397 6758305 6757397 ID=Msa0833660-mRNA-1:cds;Parent=Msa0833660-mRNA-1
chr5_4 CDS 6755265 6755553 6755265 ID=Msa0833660-mRNA-1:cds;Parent=Msa0833660-mRNA-1
chr5_4 CDS 6755043 6755128 6755043 ID=Msa0833660-mRNA-1:cds;Parent=Msa0833660-mRNA-1
chr5_4 CDS 6754736 6754959 6754736 ID=Msa0833660-mRNA-1:cds;Parent=Msa0833660-mRNA-1
chr5_4 CDS 6754571 6754637 6754571 ID=Msa0833660-mRNA-1:cds;Parent=Msa0833660-mRNA-1
chr5_4 CDS 6754424 6754483 6754424 ID=Msa0833660-mRNA-1:cds;Parent=Msa0833660-mRNA-1
chr5_4 CDS 6754223 6754336 6754223 ID=Msa0833660-mRNA-1:cds;Parent=Msa0833660-mRNA-1
chr5_4 three_prime_UTR 6753471 6754222 6753471 ID=Msa0833660-mRNA-1:three_prime_utr;Parent=Msa0833660-mRNA-1
Gene Sequence

>Msa0833660

ATGGCCGACGAAGCTAAAGCCAAAGGCAACGCTGCATTCTCCTCCGGCGATTTCGCAACCGCCATCCGTCACTTCTCAGATGCCATCAATCTTTCCCCCACCAATCACGTCCTGTATTCCAACCGATCCGCTGCTCACGCTTCTCTCCAGAATTACACTGACGCTTTAACCGATGCAAAGAAAACCGTCGAACTCAAACCTGATTGGTCAAAGGGTTACAGCCGTCTCGGTGCCGCTCATCTTGGTCTTTCTCAATACGACGAAGCTGTTTCAGCTTACAAGAAAGGGTTAGAAATTGATCCTAATAATGAACCCTTGAAATCAGGTTTAGCCGATGCTCAAAAAGCCGCGGCGGCGAGTTTTTCTAGGCCACGTTCTGCGCCGGGTGCCAATCCGTTTGGTGATGCTTTTTCTGGACCGGAGATGTGGGCGAAACTTACTGCTGATCCTACAACTAGGGTTTATCTTCAACAGCCTGATTTTGTGAAGATGATGCAAGATATTCAAAAGGATCCCAATAATTTGAATTTGTATTTGAAGGATCAGAGAGTTATGCAAGCTTTTGGGGTTTTGCTTAATGTTAAGATTGGAAGAGGTGGTGATGATGTGGATATGCCTGATATGCCGTCCAGTTCGGAGAGGAAGAGAGCTGCTGAACCTGAGGTGGCAAAGCAGGCGGAGGTTGAGCCTGAGCCGGAACCGGAGCCAATGGAGGAGGTGGCTGATGAGGAGAAGGAAGTGAAGCAGAGGAAGGCTGAGGCGCAGAAGGAGAAGGAGGCTGGTAATGCTGCGTATAAGAAGAAGGATTTTGATACTGCGATTCTGCATTATTCGAAAGCTTTGGAATTGGATGATGAGGATGTTTCCTTCCTCACTAACCGTGCTGCTGTATACTTGGAAATGGGAAAGTATGAGGATTGCATAAAAGATTGTGATAAGGCTGTTGAAAGAGGACGAGAGCTAAGAGCAGACTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAACTGCCATGGGTAAAACGGCAAAATGCTCTAAAGATTATGAACCTGTCATTGAGACTTACCAAAAAGCGCTTACAGAGCACCGTAACCCAGACACCCTGAAGAAACTCAATGAAGCTGAGAAGGCCAAGAAAGAACTAGAACAACAAGAATACTTCGATCCAAATTTGGCTGATGAGGAGAGAGAAAAAGGGAATGAATACTTTAAGCAGCAGAAGTATCCTGAAGCTATTAAGCATTACACAGAGTCTATAAAAAGAAACCCGAAAAATCCTAAGGCTTATAGTAACAGAGCTGCATGTTACACAAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGTATTGAGCTTGACCCGACCTTCACCAAGGGTTATACCCGGAAGGGTGCGGTTCAGTTTTTCATGAAAGAATATGAAAAGGCTTTGGAAACATACCAGGAAGGGTTGAAACATGATGCAAACAACCAGGAATTGCTTGAAGGGGTTCGAAGTTGTGTGAAGCAAATTAATAGAACCAGTCGTGGGGATGTAACTCCTGAAGAGTTGAAGGAGAGACAGGCTAAGGCAATGCAAGATCCAGAGATTCAGAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGGTTGATTTCCAGGAAAATCCAAAGGCTGCACAGGAACATACCAAGAACCCGGGTGTGATGGACAAGATCCAAAAGCTGATCAGTGCCGGAATTGTCCAGATGAAGTAA
Protein sequence

>Msa0833660

MADEAKAKGNAAFSSGDFATAIRHFSDAINLSPTNHVLYSNRSAAHASLQNYTDALTDAKKTVELKPDWSKGYSRLGAAHLGLSQYDEAVSAYKKGLEIDPNNEPLKSGLADAQKAAAASFSRPRSAPGANPFGDAFSGPEMWAKLTADPTTRVYLQQPDFVKMMQDIQKDPNNLNLYLKDQRVMQAFGVLLNVKIGRGGDDVDMPDMPSSSERKRAAEPEVAKQAEVEPEPEPEPMEEVADEEKEVKQRKAEAQKEKEAGNAAYKKKDFDTAILHYSKALELDDEDVSFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRADYKMIARALTRKGTAMGKTAKCSKDYEPVIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPNLADEEREKGNEYFKQQKYPEAIKHYTESIKRNPKNPKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQFFMKEYEKALETYQEGLKHDANNQELLEGVRSCVKQINRTSRGDVTPEELKERQAKAMQDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPGVMDKIQKLISAGIVQMK*