AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0977090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0977090 MtrunA17_Chr6g0456351 91.311 633 30 3 1 632 1 609 0.0 1136
Msa0977090 MtrunA17_Chr7g0217421 54.676 278 120 3 321 595 21 295 4.10e-89 282
Msa0977090 MtrunA17_Chr7g0260601 47.557 307 146 2 307 598 196 502 7.46e-86 283
Msa0977090 MtrunA17_Chr3g0143721 55.185 270 113 3 340 606 249 513 7.89e-86 283
Msa0977090 MtrunA17_Chr4g0052411 47.230 343 158 6 277 600 151 489 1.48e-85 281
Msa0977090 MtrunA17_Chr5g0429571 57.565 271 107 3 325 589 298 566 3.21e-85 283
Msa0977090 MtrunA17_Chr2g0297281 51.020 294 137 4 332 622 279 568 5.46e-84 279
Msa0977090 MtrunA17_Chr3g0104211 57.752 258 101 3 338 589 302 557 1.64e-82 276
Msa0977090 MtrunA17_Chr6g0476861 50.186 269 130 1 331 595 188 456 1.97e-79 265
Msa0977090 MtrunA17_Chr7g0248361 52.290 262 117 2 340 595 192 451 6.44e-79 263
Msa0977090 MtrunA17_Chr3g0135721 52.190 274 125 3 334 606 217 485 2.57e-78 263
Msa0977090 MtrunA17_Chr4g0031821 49.630 270 132 1 324 589 304 573 5.12e-78 264
Msa0977090 MtrunA17_Chr8g0362771 49.827 289 132 5 316 599 212 492 1.74e-76 258
Msa0977090 MtrunA17_Chr3g0094871 47.876 259 132 1 338 593 9 267 2.13e-76 250
Msa0977090 MtrunA17_Chr3g0135761 52.672 262 119 2 342 603 224 480 2.18e-75 254
Msa0977090 MtrunA17_Chr2g0331161 50.965 259 122 2 340 595 415 671 3.53e-74 255
Msa0977090 MtrunA17_Chr1g0158881 49.630 270 133 2 331 600 320 586 1.78e-71 246
Msa0977090 MtrunA17_Chr3g0129971 48.881 268 130 3 340 600 296 563 1.99e-69 241
Msa0977090 MtrunA17_Chr5g0432631 50.936 267 125 4 334 599 222 483 5.29e-69 240
Msa0977090 MtrunA17_Chr5g0432641 50.000 258 127 2 342 599 193 448 2.26e-66 229
Msa0977090 MtrunA17_Chr8g0388371 42.857 280 146 3 318 585 381 658 2.12e-63 225
Msa0977090 MtrunA17_Chr3g0135781 53.804 184 84 1 316 498 30 213 6.97e-57 191
Msa0977090 MtrunA17_Chr1g0192151 43.265 245 133 3 339 579 166 408 2.27e-53 188
Msa0977090 MtrunA17_Chr4g0014731 43.265 245 133 3 339 579 167 409 2.63e-53 188
Msa0977090 MtrunA17_Chr7g0264521 41.129 248 142 3 329 574 194 439 2.43e-51 190
Msa0977090 MtrunA17_Chr7g0264521 35.640 289 164 6 324 603 461 736 5.57e-47 177
Msa0977090 MtrunA17_Chr3g0145011 40.486 247 141 3 339 581 138 382 2.59e-51 182
Msa0977090 MtrunA17_Chr2g0327121 42.797 236 132 2 340 574 207 440 2.98e-51 189
Msa0977090 MtrunA17_Chr2g0327121 37.363 273 149 6 320 583 458 717 2.54e-46 175
Msa0977090 MtrunA17_Chr1g0180791 42.373 236 133 2 340 574 205 438 4.41e-51 189
Msa0977090 MtrunA17_Chr1g0180791 38.662 269 143 6 324 583 460 715 7.80e-48 180
Msa0977090 MtrunA17_Chr3g0141901 42.857 217 119 2 368 581 165 379 5.02e-51 181
Msa0977090 MtrunA17_Chr1g0168321 40.840 262 110 3 340 595 164 386 3.07e-48 176
Msa0977090 MtrunA17_Chr4g0050561 37.313 268 149 4 342 598 158 417 7.54e-48 173
Msa0977090 MtrunA17_Chr8g0345461 39.200 250 146 3 340 585 165 412 1.18e-47 173
Msa0977090 MtrunA17_Chr7g0255721 42.035 226 126 3 340 562 685 908 2.06e-47 179
Msa0977090 MtrunA17_Chr7g0255721 38.288 222 135 2 347 568 393 612 3.80e-33 136
Msa0977090 MtrunA17_Chr2g0277831 45.852 229 116 4 342 565 245 470 3.05e-47 178
Msa0977090 MtrunA17_Chr2g0277831 40.000 225 134 1 339 562 532 756 6.11e-41 159
Msa0977090 MtrunA17_Chr7g0262801 40.486 247 141 3 342 584 189 433 1.23e-46 171
Msa0977090 MtrunA17_Chr1g0182711 40.081 247 142 3 342 584 190 434 3.02e-46 169
Msa0977090 MtrunA17_Chr1g0200081 35.065 308 180 7 285 585 127 421 1.39e-45 167
Msa0977090 MtrunA17_Chr7g0255651 40.316 253 145 3 318 566 260 510 2.13e-44 167
Msa0977090 MtrunA17_Chr7g0255651 35.545 211 119 6 374 575 48 250 1.71e-20 95.9
Msa0977090 MtrunA17_Chr8g0357301 38.136 236 133 4 355 581 485 716 4.29e-43 166
Msa0977090 MtrunA17_Chr7g0255641 37.751 249 148 4 340 583 658 904 4.65e-43 166
Msa0977090 MtrunA17_Chr7g0255641 35.268 224 130 6 378 592 432 649 1.91e-28 121
Msa0977090 MtrunA17_Chr3g0108321 42.929 198 106 3 330 523 152 346 2.42e-41 154
Msa0977090 MtrunA17_Chr7g0255691 41.921 229 127 3 340 564 286 512 1.65e-40 155
Msa0977090 MtrunA17_Chr7g0255691 38.235 204 115 4 369 565 47 246 8.01e-27 115
Msa0977090 MtrunA17_Chr7g0255901 38.235 238 136 7 335 565 634 867 7.56e-38 150
Msa0977090 MtrunA17_Chr3g0086401 36.552 290 146 7 310 565 38 323 4.51e-37 147
Msa0977090 MtrunA17_Chr3g0086401 36.214 243 135 4 340 563 385 626 6.94e-33 134
Msa0977090 MtrunA17_Chr6g0459561 36.458 288 157 11 333 606 378 653 5.82e-37 146
Msa0977090 MtrunA17_Chr4g0026631 38.017 242 140 7 332 570 122 356 6.24e-37 143
Msa0977090 MtrunA17_Chr1g0202371 40.756 238 112 8 336 559 393 615 2.01e-36 145
Msa0977090 MtrunA17_Chr1g0190401 42.391 184 102 2 340 519 677 860 2.22e-36 146
Msa0977090 MtrunA17_Chr8g0387641 36.742 264 147 6 336 595 517 764 4.79e-36 144
Msa0977090 MtrunA17_Chr2g0321241 36.735 245 139 8 332 570 127 361 7.98e-36 140
Msa0977090 MtrunA17_Chr6g0462581 39.914 233 131 5 336 564 496 723 1.18e-35 143
Msa0977090 MtrunA17_Chr2g0316851 37.069 232 137 4 341 565 595 824 1.80e-35 144
Msa0977090 MtrunA17_Chr4g0043381 34.553 246 145 4 341 583 838 1070 1.86e-35 143
Msa0977090 MtrunA17_Chr3g0086411 34.470 264 156 3 340 586 215 478 3.38e-35 139
Msa0977090 MtrunA17_Chr3g0086411 45.205 146 73 1 427 565 7 152 1.80e-25 110
Msa0977090 MtrunA17_Chr3g0127431 37.607 234 138 4 335 564 79 308 4.25e-35 137
Msa0977090 MtrunA17_Chr5g0397121 39.056 233 134 5 336 564 509 737 8.85e-35 140
Msa0977090 MtrunA17_Chr2g0327231 41.436 181 97 4 321 495 328 505 2.27e-34 137
Msa0977090 MtrunA17_Chr2g0327231 37.079 89 53 1 340 428 153 238 4.91e-12 68.9
Msa0977090 MtrunA17_Chr1g0202381 39.407 236 119 8 336 559 464 687 3.55e-34 139
Msa0977090 MtrunA17_Chr3g0116131 39.130 230 131 6 335 559 897 1122 7.84e-34 138
Msa0977090 MtrunA17_Chr4g0004121 37.349 249 141 6 337 575 239 482 9.17e-34 135
Msa0977090 MtrunA17_Chr1g0204031 38.462 234 134 6 336 564 553 781 2.14e-33 136
Msa0977090 MtrunA17_Chr3g0127401 37.179 234 139 4 335 564 76 305 2.55e-33 131
Msa0977090 MtrunA17_Chr5g0432391 44.048 168 92 1 414 581 78 243 3.49e-33 132
Msa0977090 MtrunA17_Chr1g0195741 37.712 236 138 5 335 565 933 1164 4.37e-33 136
Msa0977090 MtrunA17_Chr1g0195731 37.295 244 144 6 335 573 929 1168 5.55e-33 135
Msa0977090 MtrunA17_Chr4g0052271 36.187 257 148 9 337 585 116 364 8.94e-33 130
Msa0977090 MtrunA17_Chr4g0038101 36.522 230 137 5 335 559 716 941 4.27e-32 132
Msa0977090 MtrunA17_Chr4g0033451 36.066 244 147 4 338 574 378 619 3.13e-31 130
Msa0977090 MtrunA17_Chr7g0246111 35.931 231 141 5 337 564 209 435 2.77e-30 125
Msa0977090 MtrunA17_Chr6g0459541 30.968 310 169 10 333 606 38 338 1.68e-29 120
Msa0977090 MtrunA17_Chr2g0289231 35.455 220 124 5 369 584 335 540 7.04e-28 118
Msa0977090 MtrunA17_Chr4g0047411 36.726 226 123 6 370 580 207 427 2.60e-27 117
Msa0977090 MtrunA17_Chr6g0459551 30.065 306 166 9 340 606 102 398 1.41e-25 110
Msa0977090 MtrunA17_Chr6g0459531 28.058 278 156 9 340 606 67 311 1.35e-15 78.2
Msa0977090 MtrunA17_Chr5g0404651 35.404 161 87 6 368 520 243 394 5.37e-13 71.6
Msa0977090 MtrunA17_Chr4g0062081 42.857 77 42 2 344 418 11 87 7.48e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0977090 AT3G02450.1 68.039 510 145 5 123 631 130 622 0.0 694
Msa0977090 AT5G58870.1 57.795 263 103 3 336 592 322 582 2.12e-85 284
Msa0977090 AT5G15250.1 55.472 265 112 3 334 595 216 477 2.86e-85 281
Msa0977090 AT1G50250.1 56.439 264 110 2 340 600 259 520 3.59e-85 281
Msa0977090 AT2G30950.1 54.815 270 115 4 334 600 219 484 8.43e-85 280
Msa0977090 AT2G30950.2 54.815 270 115 4 334 600 219 484 8.43e-85 280
Msa0977090 AT2G30950.3 54.815 270 115 4 334 600 219 484 8.43e-85 280
Msa0977090 AT2G30950.4 54.815 270 115 4 334 600 223 488 8.90e-85 280
Msa0977090 AT1G06430.1 50.495 303 143 4 323 622 201 499 1.14e-84 280
Msa0977090 AT1G06430.3 50.495 303 143 4 323 622 201 499 1.14e-84 280
Msa0977090 AT1G06430.2 50.495 303 143 4 323 622 201 499 1.14e-84 280
Msa0977090 AT3G47060.1 58.238 261 101 3 338 592 320 578 1.36e-84 282
Msa0977090 AT5G42270.1 55.682 264 112 2 340 600 247 508 2.33e-84 279
Msa0977090 AT5G15250.2 51.042 288 112 4 334 595 216 500 1.81e-82 269
Msa0977090 AT2G26140.1 55.344 262 112 2 342 603 226 482 1.55e-79 266
Msa0977090 AT1G07510.1 48.746 279 139 1 324 598 308 586 2.48e-79 268
Msa0977090 AT2G29080.1 48.561 278 140 1 324 598 303 580 2.57e-77 263
Msa0977090 AT5G53170.1 51.111 270 129 2 331 600 350 616 2.63e-75 257
Msa0977090 AT3G16290.1 51.362 257 120 2 340 593 407 661 2.49e-74 256
Msa0977090 AT5G64580.1 42.151 344 166 8 288 600 239 580 3.27e-69 241
Msa0977090 AT4G23940.1 42.761 297 149 4 318 602 404 691 5.68e-64 228
Msa0977090 AT3G05530.1 43.265 245 133 3 339 579 167 409 1.95e-53 189
Msa0977090 AT5G43010.1 42.437 238 130 3 368 602 165 398 4.75e-52 184
Msa0977090 AT1G09100.1 42.857 245 134 3 339 579 166 408 6.27e-52 185
Msa0977090 AT1G45000.1 42.437 238 130 3 368 602 165 398 7.92e-52 184
Msa0977090 AT3G09840.1 41.949 236 134 2 340 574 204 437 1.16e-50 188
Msa0977090 AT3G09840.1 38.554 249 138 4 340 583 477 715 3.72e-42 163
Msa0977090 AT5G03340.1 41.949 236 134 2 340 574 204 437 1.42e-50 188
Msa0977090 AT5G03340.1 40.343 233 133 3 340 568 477 707 9.72e-46 174
Msa0977090 AT3G53230.1 41.102 236 136 2 340 574 205 438 5.46e-50 186
Msa0977090 AT3G53230.1 41.202 233 131 3 340 568 478 708 2.79e-47 178
Msa0977090 AT3G56690.1 44.053 227 120 4 340 562 721 944 9.19e-50 187
Msa0977090 AT3G56690.1 40.000 195 116 1 371 565 413 606 1.05e-36 147
Msa0977090 AT1G53750.1 39.200 250 146 3 340 585 165 412 2.01e-47 172
Msa0977090 AT4G29040.1 40.891 247 140 3 342 584 187 431 4.70e-47 172
Msa0977090 AT5G19990.2 36.940 268 150 4 342 598 102 361 6.91e-47 169
Msa0977090 AT5G19990.1 36.940 268 150 4 342 598 160 419 1.59e-46 170
Msa0977090 AT5G19990.3 36.940 268 150 4 342 598 160 419 1.59e-46 170
Msa0977090 AT2G20140.1 41.296 247 139 4 342 584 187 431 2.03e-46 170
Msa0977090 AT5G20000.1 36.940 268 150 4 342 598 160 419 3.06e-46 169
Msa0977090 AT5G58290.1 37.751 249 146 4 330 574 145 388 1.31e-43 161
Msa0977090 AT1G53780.3 33.987 306 187 6 285 585 288 583 1.56e-43 165
Msa0977090 AT1G53780.1 33.987 306 187 6 285 585 289 584 1.61e-43 165
Msa0977090 AT1G53780.4 33.987 306 187 6 285 585 289 584 1.61e-43 165
Msa0977090 AT1G53780.2 33.987 306 187 6 285 585 310 605 2.32e-43 165
Msa0977090 AT1G79560.3 37.288 236 135 4 355 581 505 736 1.65e-42 165
Msa0977090 AT1G79560.2 37.288 236 135 4 355 581 505 736 1.89e-42 165
Msa0977090 AT1G79560.1 37.288 236 135 4 355 581 505 736 1.89e-42 165
Msa0977090 AT3G01610.1 40.647 278 144 6 342 607 232 500 3.09e-42 164
Msa0977090 AT3G01610.1 36.515 241 148 4 340 577 525 763 7.37e-32 132
Msa0977090 AT3G01610.2 40.647 278 144 6 342 607 232 500 3.43e-42 164
Msa0977090 AT3G01610.2 36.515 241 148 4 340 577 525 763 7.57e-32 132
Msa0977090 AT2G03670.1 41.739 230 127 3 340 564 283 510 2.58e-39 153
Msa0977090 AT2G03670.1 39.906 213 116 5 366 570 46 254 1.59e-31 130
Msa0977090 AT5G08470.3 38.075 239 136 4 340 574 832 1062 7.33e-37 148
Msa0977090 AT5G08470.1 38.075 239 136 4 340 574 841 1071 8.60e-37 148
Msa0977090 AT5G52882.1 38.735 253 140 7 336 583 510 752 1.37e-36 147
Msa0977090 AT1G03000.1 36.287 237 142 6 335 565 650 883 1.43e-36 147
Msa0977090 AT4G28000.3 40.343 233 130 5 336 564 513 740 2.92e-36 145
Msa0977090 AT4G28000.1 40.343 233 130 5 336 564 511 738 3.32e-36 145
Msa0977090 AT4G28000.2 40.343 233 130 5 336 564 513 740 3.62e-36 145
Msa0977090 AT3G04340.1 42.935 184 101 2 340 519 781 964 5.48e-36 145
Msa0977090 AT1G64110.1 39.301 229 131 5 340 564 513 737 4.33e-35 142
Msa0977090 AT1G64110.5 39.301 229 131 5 340 564 516 740 4.47e-35 142
Msa0977090 AT1G64110.3 39.301 229 131 5 340 564 516 740 4.47e-35 142
Msa0977090 AT1G64110.2 39.301 229 131 5 340 564 518 742 4.49e-35 142
Msa0977090 AT1G64110.4 39.301 229 131 5 340 564 518 742 4.49e-35 142
Msa0977090 AT1G02890.1 38.189 254 147 7 335 582 936 1185 7.43e-35 142
Msa0977090 AT3G27120.1 35.417 288 160 11 333 606 396 671 1.71e-34 139
Msa0977090 AT3G15120.2 37.438 203 121 2 368 565 755 956 4.32e-34 140
Msa0977090 AT3G15120.1 37.438 203 121 2 368 565 745 946 4.52e-34 140
Msa0977090 AT4G02480.1 38.136 236 137 6 335 565 955 1186 1.25e-33 138
Msa0977090 AT2G27600.1 35.918 245 141 8 332 570 124 358 1.28e-33 134
Msa0977090 AT2G45500.4 35.776 232 140 6 337 564 77 303 1.62e-33 132
Msa0977090 AT2G45500.3 35.776 232 140 6 337 564 77 303 1.62e-33 132
Msa0977090 AT1G80350.1 37.398 246 139 6 340 575 236 476 2.74e-33 134
Msa0977090 AT2G34560.1 34.661 251 155 5 340 585 100 346 8.46e-33 130
Msa0977090 AT2G34560.2 34.661 251 155 5 340 585 109 355 1.01e-32 130
Msa0977090 AT2G45500.2 35.776 232 140 6 337 564 210 436 1.21e-32 132
Msa0977090 AT2G45500.1 35.776 232 140 6 337 564 214 440 1.27e-32 132
Msa0977090 AT2G45500.5 35.776 232 140 6 337 564 220 446 1.36e-32 132
Msa0977090 AT1G50140.2 35.798 257 152 6 335 586 684 932 2.14e-32 134
Msa0977090 AT1G50140.5 35.798 257 152 6 335 586 684 932 2.14e-32 134
Msa0977090 AT1G50140.3 35.798 257 152 6 335 586 706 954 2.22e-32 134
Msa0977090 AT1G50140.1 35.798 257 152 6 335 586 706 954 2.22e-32 134
Msa0977090 AT1G50140.4 35.798 257 152 6 335 586 706 954 2.22e-32 134
Msa0977090 AT2G03670.2 39.906 213 116 5 366 570 46 254 2.40e-32 130
Msa0977090 AT2G03670.2 41.429 140 77 2 340 474 283 422 4.43e-19 90.9
Msa0977090 AT4G24860.3 36.614 254 140 7 335 583 810 1047 6.49e-32 132
Msa0977090 AT4G24860.1 36.614 254 140 7 335 583 812 1049 6.79e-32 132
Msa0977090 AT3G19740.1 34.387 253 153 6 335 582 696 940 8.71e-32 132
Msa0977090 AT4G24860.2 38.261 230 133 6 335 559 808 1033 9.77e-32 132
Msa0977090 AT4G24860.4 38.261 230 133 6 335 559 785 1010 9.88e-32 132
Msa0977090 AT1G05910.1 35.458 251 153 4 337 580 375 623 3.59e-31 130
Msa0977090 AT5G53540.1 36.681 229 137 4 340 564 84 308 5.94e-31 125
Msa0977090 AT4G27680.1 35.043 234 144 4 335 564 76 305 4.88e-30 123
Msa0977090 AT4G04910.1 35.345 232 130 6 370 586 244 470 1.45e-26 115
Msa0977090 AT1G62130.1 35.178 253 133 8 335 583 745 970 1.91e-26 115
Msa0977090 AT1G62130.2 35.178 253 133 8 335 583 738 963 1.95e-26 115
Msa0977090 AT4G04180.2 32.889 225 134 5 340 554 311 528 6.31e-26 113
Msa0977090 AT1G45000.2 48.182 110 54 1 368 474 165 274 6.39e-26 109
Msa0977090 AT4G04180.1 32.889 225 134 5 340 554 316 533 6.64e-26 113
Msa0977090 AT5G08470.2 38.667 150 85 2 340 485 841 987 1.93e-21 100
Msa0977090 AT1G02890.2 32.677 254 133 8 335 582 936 1157 5.67e-21 98.6
Msa0977090 AT5G17740.1 26.829 246 146 5 368 599 237 462 1.57e-13 73.9
Msa0977090 AT5G17730.1 31.053 190 103 7 338 509 200 379 1.44e-12 70.9

Find 154 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCAACTGTCTGACTATT+AGG 0.199018 6_4:-11648721 None:intergenic
GCGGCCGAGGTTACGGTTAT+TGG 0.248138 6_4:+11648048 Msa0977090:CDS
ACTGGCAGATACTGTGAAAA+AGG 0.271192 6_4:-11650808 None:intergenic
TCATTGAGGTTTCAACAAAA+TGG 0.272591 6_4:+11647911 Msa0977090:CDS
AATAAGAAATTTGAGTATTA+TGG 0.276076 6_4:+11647869 Msa0977090:CDS
AAGCCGTTGTATTTGTTTAC+AGG 0.284997 6_4:+11653023 Msa0977090:three_prime_UTR
ATTTCCTTGCTGTACTAAAA+AGG 0.285721 6_4:-11650878 None:intergenic
CAATCATTGAATTCATGATT+TGG 0.317172 6_4:+11652873 Msa0977090:exon
GTAGCTTTGCCCCTACCTTT+TGG 0.317824 6_4:-11650704 None:intergenic
AGTGAAAATTGTTCCGTATT+CGG 0.326742 6_4:+11648222 Msa0977090:CDS
AGTAATGTCTTGCCAGTTCC+TGG 0.338717 6_4:-11650753 None:intergenic
GCTATTGAAAGAGCAAAGTT+TGG 0.356257 6_4:+11652723 Msa0977090:CDS
GATGATAAGAAGAATGATTA+TGG 0.359397 6_4:+11647977 Msa0977090:CDS
TGATTCAAATCCATCCATTT+CGG 0.359843 6_4:-11651561 None:intergenic
AACTTGCCTGATTGAGCGTT+TGG 0.362410 6_4:-11650980 None:intergenic
GCATTTGAGAGGAGTTCCTT+TGG 0.379597 6_4:+11651721 Msa0977090:CDS
TGTGGCAAGGGAAGATATAA+TGG 0.388759 6_4:+11652698 Msa0977090:CDS
TTTCTCCTTCCTTCTTCGTC+AGG 0.391335 6_4:-11651686 None:intergenic
CCCTTGGATGCCATCATTGA+TGG 0.392559 6_4:+11652803 Msa0977090:CDS
TGAGATTGCGGCCGAGGTTA+CGG 0.403962 6_4:+11648041 Msa0977090:CDS
AGAAGAATGATTATGGTAAA+GGG 0.405752 6_4:+11647984 Msa0977090:CDS
TTTCGTTGAGATTGCGGCCG+AGG 0.410912 6_4:+11648035 Msa0977090:CDS
TTAGGTTTCCGCTTCTTAGC+TGG 0.413254 6_4:-11648703 None:intergenic
AGGGCTGGATCCAAGGCTTC+TGG 0.417900 6_4:-11651620 None:intergenic
GTGGAATCTTGTGGTGGAAG+AGG 0.422399 6_4:-11647520 None:intergenic
GAAATGATTGAATGTGGAAA+TGG 0.423329 6_4:-11647574 None:intergenic
TTCAATGATTGATAACCTAA+TGG 0.427719 6_4:-11652861 None:intergenic
TTTCTTTACCTTGTTGTACT+GGG 0.428267 6_4:+11647729 Msa0977090:CDS
CTTGTCGGTCCTCCAGGAAC+TGG 0.431660 6_4:+11650741 Msa0977090:CDS
CTTAGTTTGATGAGGGAAAA+GGG 0.432422 6_4:+11648550 Msa0977090:CDS
ATGAGGTTGGAGTGTTTGTT+AGG 0.432614 6_4:+11648110 Msa0977090:CDS
GATGACATACAAGGACCATT+AGG 0.434995 6_4:+11652846 Msa0977090:CDS
CTCGCAATCAAGTCCGAATA+CGG 0.437861 6_4:-11648235 None:intergenic
AAGAAGAATGATTATGGTAA+AGG 0.444958 6_4:+11647983 Msa0977090:CDS
CGTGCAATAGCAGGGGAAGC+AGG 0.445110 6_4:+11650780 Msa0977090:CDS
TTCTTCAATTTATTCAATGC+AGG 0.445292 6_4:-11648451 None:intergenic
TATTGGTTATGAGGATGAAA+AGG 0.452735 6_4:+11648065 Msa0977090:CDS
GGTTACGGTTATTGGTTATG+AGG 0.454581 6_4:+11648056 Msa0977090:CDS
TCTTAGTTTGATGAGGGAAA+AGG 0.455840 6_4:+11648549 Msa0977090:CDS
TTGTCATTGCAGCAACTAAC+CGG 0.455886 6_4:+11651597 Msa0977090:CDS
TTGATTGCGAGTCTTCGAAA+TGG 0.464901 6_4:+11648247 Msa0977090:CDS
TCTCGAGGAAAGTATTTGTA+GGG 0.465124 6_4:+11651660 Msa0977090:CDS
GAGTTCGTTGAAATGTTTGT+TGG 0.467301 6_4:+11650831 Msa0977090:CDS
CCTAGAGGAGTGTTGCTTGT+CGG 0.467543 6_4:+11650726 Msa0977090:CDS
TTTCCCTCATCAAACTAAGA+AGG 0.468514 6_4:-11648546 None:intergenic
GTTGGATTTGAAGATGTTCA+AGG 0.468812 6_4:+11648736 Msa0977090:CDS
CCCATCAATGATGGCATCCA+AGG 0.469878 6_4:-11652804 None:intergenic
TGATTGCGAGTCTTCGAAAT+GGG 0.474413 6_4:+11648248 Msa0977090:CDS
CATTGATGGGAAGAAGTGAT+AGG 0.477672 6_4:+11652817 Msa0977090:CDS
TTCTCGAGGAAAGTATTTGT+AGG 0.479629 6_4:+11651659 Msa0977090:CDS
AACTAACCGGCCAGAAGCCT+TGG 0.480710 6_4:+11651610 Msa0977090:CDS
ATTGGTTATGAGGATGAAAA+GGG 0.482073 6_4:+11648066 Msa0977090:CDS
GTGTTGCTTGTCGGTCCTCC+AGG 0.483133 6_4:+11650735 Msa0977090:CDS
TTCAGAGAAATGATTGAATG+TGG 0.485505 6_4:-11647580 None:intergenic
AAGAAGCTTCAATGATGAAC+GGG 0.488699 6_4:+11650956 Msa0977090:CDS
AGTAGATGTTTCGATGGATA+AGG 0.488805 6_4:+11648381 Msa0977090:CDS
ACGGGACCAAACGCTCAATC+AGG 0.492720 6_4:+11650974 Msa0977090:CDS
TCATCAATGAATATGATTGA+TGG 0.492788 6_4:-11650906 None:intergenic
TGAGAATGTTGAAAATGATA+AGG 0.493218 6_4:+11648330 Msa0977090:CDS
TTACTTGCACGTGCAATAGC+AGG 0.494558 6_4:+11650771 Msa0977090:CDS
CGACCGGGACGACACAGGGC+TGG 0.495070 6_4:-11651635 None:intergenic
AGCTTGGTAAGCTGTTCCCT+TGG 0.496185 6_4:+11652787 Msa0977090:CDS
TACCTTTGATTCCTTTGATG+TGG 0.496607 6_4:+11648650 Msa0977090:CDS
ATTGTACAAGTAAATTTGAC+AGG 0.498751 6_4:-11652900 None:intergenic
CTCGTGGAATACTGCCACTC+AGG 0.503338 6_4:-11648499 None:intergenic
AATAAGTGTGAACAATGAAA+AGG 0.503440 6_4:-11652928 None:intergenic
ACGACACAGGGCTGGATCCA+AGG 0.506054 6_4:-11651627 None:intergenic
GTTGAAATGTTTGTTGGAAG+AGG 0.509876 6_4:+11650837 Msa0977090:CDS
GAGAGGAGTTCCTTTGGAGG+AGG 0.513124 6_4:+11651727 Msa0977090:CDS
GAATCAATGATAAGCAACTA+AGG 0.515226 6_4:+11652745 Msa0977090:CDS
GATGTAGTTGCTGACCGAAA+TGG 0.515352 6_4:+11651547 Msa0977090:intron
CCTTGGATGCCATCATTGAT+GGG 0.519963 6_4:+11652804 Msa0977090:CDS
AGAAACGACCGGGACGACAC+AGG 0.521094 6_4:-11651640 None:intergenic
ATCTTAATTACCAAAAGGTA+GGG 0.521468 6_4:+11650694 Msa0977090:CDS
GAAACGACCGGGACGACACA+GGG 0.522419 6_4:-11651639 None:intergenic
CCGACAAGCAACACTCCTCT+AGG 0.523663 6_4:-11650726 None:intergenic
GATCCAGCCCTGTGTCGTCC+CGG 0.528518 6_4:+11651632 Msa0977090:CDS
AATCTTGTGGTGGAAGAGGA+AGG 0.529777 6_4:-11647516 None:intergenic
CACTTGTTAGTAGTAGAAGT+AGG 0.531041 6_4:+11647954 Msa0977090:CDS
TTCTGCAAAAGTAGAGCTCA+TGG 0.532444 6_4:+11648765 Msa0977090:CDS
AGGGGATCTTAATTACCAAA+AGG 0.534990 6_4:+11650689 Msa0977090:CDS
ATTCCTTCTTAGTTTGATGA+GGG 0.535065 6_4:+11648543 Msa0977090:CDS
TCGGCGTATATATTATAATA+CGG 0.537481 6_4:+11648303 Msa0977090:CDS
AAATGATTGAATGTGGAAAT+GGG 0.539688 6_4:-11647573 None:intergenic
TCACTTCTTCCCATCAATGA+TGG 0.540303 6_4:-11652813 None:intergenic
AATTCCTTCTTAGTTTGATG+AGG 0.542897 6_4:+11648542 Msa0977090:CDS
ACTTGTTAGTAGTAGAAGTA+GGG 0.546654 6_4:+11647955 Msa0977090:CDS
AGGTTTCAACAAAATGGTGT+TGG 0.547536 6_4:+11647917 Msa0977090:CDS
TACTTGCACGTGCAATAGCA+GGG 0.549928 6_4:+11650772 Msa0977090:CDS
TAGTTTGATGAGGGAAAAGG+GGG 0.551133 6_4:+11648552 Msa0977090:CDS
AGCCACATCAAAGGAATCAA+AGG 0.552057 6_4:-11648652 None:intergenic
TTAATTGCCACAGTTACTGA+TGG 0.552662 6_4:+11651770 Msa0977090:CDS
TTTGAGAGGAGTTCCTTTGG+AGG 0.552837 6_4:+11651724 Msa0977090:CDS
GATCTTAATTACCAAAAGGT+AGG 0.556895 6_4:+11650693 Msa0977090:CDS
AAACATTTCAACGAACTCAC+TGG 0.559253 6_4:-11650826 None:intergenic
GAAGAATGATTATGGTAAAG+GGG 0.559832 6_4:+11647985 Msa0977090:CDS
GGCTCCTCAATCTGTGTTAG+CGG 0.560045 6_4:+11648588 Msa0977090:CDS
TACTTTCCTCGAGAAACGAC+CGG 0.560952 6_4:-11651651 None:intergenic
AAGAATGATTATGGTAAAGG+GGG 0.562838 6_4:+11647986 Msa0977090:CDS
TAGATAGTTTCATGTCTGCA+AGG 0.562996 6_4:+11650669 Msa0977090:intron
AGATAGTTTCATGTCTGCAA+GGG 0.563490 6_4:+11650670 Msa0977090:intron
GATGAACTTGATGCGGTTGG+TGG 0.563575 6_4:+11650924 Msa0977090:CDS
ATTGATGAACTTGATGCGGT+TGG 0.564921 6_4:+11650921 Msa0977090:CDS
ATTGTGTAGAATTCAAGAAG+TGG 0.570636 6_4:-11647539 None:intergenic
ACTTTCCTCGAGAAACGACC+GGG 0.571156 6_4:-11651650 None:intergenic
ATATTAGCTGTGCATTTGAG+AGG 0.572900 6_4:+11651710 Msa0977090:CDS
AGTAAAATAAGCAAGGAGCT+TGG 0.574154 6_4:+11652771 Msa0977090:CDS
CTGGATCCAAGGCTTCTGGC+CGG 0.574869 6_4:-11651616 None:intergenic
ATCGCCGCTAACACAGATTG+AGG 0.577228 6_4:-11648592 None:intergenic
AGTGAGAATGCTGTAAGATC+TGG 0.580335 6_4:+11648421 Msa0977090:CDS
GAGAATGCTGTAAGATCTGG+TGG 0.581579 6_4:+11648424 Msa0977090:CDS
GTAGGGGAACCTGACGAAGA+AGG 0.589232 6_4:+11651677 Msa0977090:CDS
GCTTTGCTTGCTGCTCGAAG+AGG 0.589336 6_4:+11651833 Msa0977090:CDS
AAACCTAATAGTCAGACAGT+TGG 0.591387 6_4:+11648718 Msa0977090:CDS
AGGTAGTGAAACTGTGGCAA+GGG 0.592368 6_4:+11652686 Msa0977090:intron
CTCGAGGAAAGTATTTGTAG+GGG 0.592820 6_4:+11651661 Msa0977090:CDS
AAGGTCTAGTAAAATAAGCA+AGG 0.598431 6_4:+11652764 Msa0977090:CDS
CTGCTAGTCCAGCTAAGAAG+CGG 0.598949 6_4:+11648695 Msa0977090:CDS
GAAGAAGCTTCAATGATGAA+CGG 0.603023 6_4:+11650955 Msa0977090:CDS
AGGAAACAAGATGACATACA+AGG 0.608187 6_4:+11652837 Msa0977090:CDS
GGGAACCTGACGAAGAAGGA+AGG 0.608258 6_4:+11651681 Msa0977090:CDS
TTAGTTTGATGAGGGAAAAG+GGG 0.610943 6_4:+11648551 Msa0977090:CDS
ATGTTAGCATCCTCCTCCAA+AGG 0.613955 6_4:-11651737 None:intergenic
CAGGTAGTGAAACTGTGGCA+AGG 0.614725 6_4:+11652685 Msa0977090:intron
TCTTAATTACCAAAAGGTAG+GGG 0.616122 6_4:+11650695 Msa0977090:CDS
CCATCAATGATGGCATCCAA+GGG 0.617279 6_4:-11652803 None:intergenic
CTACTTCTACTACTAACAAG+TGG 0.617574 6_4:-11647953 None:intergenic
ACAGTTACTGATGGTCTCGT+AGG 0.621604 6_4:+11651779 Msa0977090:CDS
GATGCGGTTGGTGGCAAGCG+TGG 0.625586 6_4:+11650933 Msa0977090:CDS
ATTCAAGAAGTGGAATCTTG+TGG 0.629032 6_4:-11647529 None:intergenic
ACAAGTAGTAGATGTTTCGA+TGG 0.632621 6_4:+11648375 Msa0977090:CDS
AAGAAATTCTCTAAGAGACG+AGG 0.632753 6_4:+11648469 Msa0977090:CDS
CGATATATAAGCCACATCAA+AGG 0.635077 6_4:-11648661 None:intergenic
TAACCTGTAAACAAATACAA+CGG 0.637673 6_4:-11653026 None:intergenic
GATAGTTTCATGTCTGCAAG+GGG 0.647274 6_4:+11650671 Msa0977090:intron
AATCTGTGTTAGCGGCGATG+AGG 0.652895 6_4:+11648596 Msa0977090:CDS
CAAGAAGTGGAATCTTGTGG+TGG 0.653275 6_4:-11647526 None:intergenic
ATTCATTGATGAACTTGATG+CGG 0.654455 6_4:+11650917 Msa0977090:CDS
AGAATGATTATGGTAAAGGG+GGG 0.655129 6_4:+11647987 Msa0977090:CDS
ATAACCAATAACCGTAACCT+CGG 0.664720 6_4:-11648052 None:intergenic
CTCTGCAGGTAGTGAAACTG+TGG 0.666734 6_4:+11652680 Msa0977090:intron
GAAAATGACCCAGTACAACA+AGG 0.669902 6_4:-11647737 None:intergenic
TAGTTGCTGACCGAAATGGA+TGG 0.680096 6_4:+11651551 Msa0977090:intron
TACGAGACCATCAGTAACTG+TGG 0.680129 6_4:-11651777 None:intergenic
ACTTGCACGTGCAATAGCAG+GGG 0.689234 6_4:+11650773 Msa0977090:CDS
GTAGGGGCAAAGCTACCTAG+AGG 0.692537 6_4:+11650711 Msa0977090:CDS
ATTTGAATCAGAAATGAGAG+TGG 0.693418 6_4:+11651574 Msa0977090:CDS
GACGAGGTTCGATTCCTGAG+TGG 0.695014 6_4:+11648485 Msa0977090:CDS
GAGTCTTCGAAATGGGAATG+TGG 0.703259 6_4:+11648255 Msa0977090:CDS
GATGGATAAGGATATAGACA+AGG 0.709329 6_4:+11648393 Msa0977090:CDS
AATGTCTTGCCAGTTCCTGG+AGG 0.719587 6_4:-11650750 None:intergenic
TCTTCGAGCAGCAAGCAAAG+CGG 0.719728 6_4:-11651831 None:intergenic
TGCAAAAGTAGAGCTCATGG+AGG 0.758952 6_4:+11648768 Msa0977090:CDS
TGATAACTGTGATCACACTG+TGG 0.773244 6_4:+11648626 Msa0977090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATATAATCTAATAAAATT+AGG + chr6_4:11649879-11649898 Msa0977090:intron 10.0%
!! AATAATTTGATAAAAAAAAC+TGG - chr6_4:11651388-11651407 None:intergenic 10.0%
!!! ATTCTATATAAATTGAATTT+TGG + chr6_4:11651991-11652010 Msa0977090:intron 10.0%
!!! GTTAAAAATTAGGAATTTTA+GGG + chr6_4:11647772-11647791 Msa0977090:CDS 15.0%
!!! AATGCTATAATTTTGAAAAT+GGG + chr6_4:11647837-11647856 Msa0977090:CDS 15.0%
!! AATAAGAAATTTGAGTATTA+TGG + chr6_4:11647869-11647888 Msa0977090:CDS 15.0%
!! TAATTACTTATAACCATATT+CGG + chr6_4:11649182-11649201 Msa0977090:intron 15.0%
!!! CTAAATGTTGTATTTTAAAA+GGG + chr6_4:11650337-11650356 Msa0977090:intron 15.0%
!! ATAACATTAAAACATCTTAT+AGG + chr6_4:11652335-11652354 Msa0977090:intron 15.0%
!! AATTTCTATTACAAAAGATA+AGG - chr6_4:11652385-11652404 None:intergenic 15.0%
!!! TCAAAACTAATTCATTTTAT+AGG - chr6_4:11653065-11653084 None:intergenic 15.0%
!!! AAATGAATTAGTTTTGATTT+TGG + chr6_4:11653068-11653087 Msa0977090:three_prime_UTR 15.0%
!! ACAGAATTCAACAAAAAAAT+TGG - chr6_4:11647634-11647653 None:intergenic 20.0%
!!! GATTTGATTTTGAATAGAAA+TGG + chr6_4:11647700-11647719 Msa0977090:exon 20.0%
!!! TTCCTAATTTTTAACCTATT+TGG - chr6_4:11647767-11647786 None:intergenic 20.0%
!!! GGTTAAAAATTAGGAATTTT+AGG + chr6_4:11647771-11647790 Msa0977090:CDS 20.0%
!!! CAATGCTATAATTTTGAAAA+TGG + chr6_4:11647836-11647855 Msa0977090:CDS 20.0%
!!! ATTTTGAAAATGGGTTTTTA+TGG + chr6_4:11647846-11647865 Msa0977090:CDS 20.0%
!!! AAAGTAGAAATTTTTCATTG+AGG + chr6_4:11647897-11647916 Msa0977090:CDS 20.0%
!!! TGTTTGTTAGGAAAAATATT+AGG + chr6_4:11648122-11648141 Msa0977090:CDS 20.0%
!!! TACAAACTTTTATTCTTATG+CGG + chr6_4:11648908-11648927 Msa0977090:intron 20.0%
!!! ATGTAATTTGTCTTTTTGAA+TGG + chr6_4:11648961-11648980 Msa0977090:intron 20.0%
!!! AAATAAGTATAGTTTTTCCA+TGG + chr6_4:11649024-11649043 Msa0977090:intron 20.0%
!!! AATAAGTATAGTTTTTCCAT+GGG + chr6_4:11649025-11649044 Msa0977090:intron 20.0%
!! TTACTTAATTGTTTACATCT+AGG + chr6_4:11649403-11649422 Msa0977090:intron 20.0%
!!! AAACAAGTAGAGTATTATAT+AGG + chr6_4:11649468-11649487 Msa0977090:intron 20.0%
!!! AACAAGTAGAGTATTATATA+GGG + chr6_4:11649469-11649488 Msa0977090:intron 20.0%
!! TTTGTGTATCAATATACAAA+TGG + chr6_4:11649520-11649539 Msa0977090:intron 20.0%
!!! ATAAAATAAGAGAAAAGTGT+TGG - chr6_4:11649636-11649655 None:intergenic 20.0%
!! ATGGTCAAAAATTAAAGTTA+CGG - chr6_4:11649793-11649812 None:intergenic 20.0%
!!! AAGTTTAATTTGGTTTTGAT+AGG - chr6_4:11650000-11650019 None:intergenic 20.0%
!!! GTTAAAAGTATCAAATATCT+CGG - chr6_4:11650153-11650172 None:intergenic 20.0%
!!! GCTAAATGTTGTATTTTAAA+AGG + chr6_4:11650336-11650355 Msa0977090:intron 20.0%
!!! TACAAAATTTTGATGCAATT+GGG - chr6_4:11650405-11650424 None:intergenic 20.0%
!! AATATAAAAGCAATACAGAT+TGG - chr6_4:11650471-11650490 None:intergenic 20.0%
!!! GTTTTCATCATTTCTAATTT+TGG + chr6_4:11650579-11650598 Msa0977090:intron 20.0%
!! AAATGACATAGAAAATTGAT+TGG - chr6_4:11651164-11651183 None:intergenic 20.0%
!! TTGATTTATGATTTGAATCT+TGG + chr6_4:11651182-11651201 Msa0977090:intron 20.0%
!! TTCATAATAAGATTTGATTC+AGG + chr6_4:11651290-11651309 Msa0977090:intron 20.0%
!! ATCAACGAAAAATTCTTTAA+AGG - chr6_4:11651530-11651549 None:intergenic 20.0%
!! TCACACAAGTTAATAATATA+CGG - chr6_4:11651965-11651984 None:intergenic 20.0%
!! AAAACATCTTATAGGTTATA+TGG + chr6_4:11652343-11652362 Msa0977090:intron 20.0%
!! AATATCATCATTTAATGTGA+AGG - chr6_4:11652599-11652618 None:intergenic 20.0%
!! AAAAAAATTGTTTGCATACA+AGG - chr6_4:11652955-11652974 None:intergenic 20.0%
! AAATGATTGAATGTGGAAAT+GGG - chr6_4:11647576-11647595 None:intergenic 25.0%
! CACCAAATAGGTTAAAAATT+AGG + chr6_4:11647762-11647781 Msa0977090:CDS 25.0%
! GATGATAAGAAGAATGATTA+TGG + chr6_4:11647977-11647996 Msa0977090:CDS 25.0%
! AAGAAGAATGATTATGGTAA+AGG + chr6_4:11647983-11648002 Msa0977090:CDS 25.0%
! AGAAGAATGATTATGGTAAA+GGG + chr6_4:11647984-11648003 Msa0977090:CDS 25.0%
! TGTTAGGAAAAATATTAGGA+CGG + chr6_4:11648126-11648145 Msa0977090:CDS 25.0%
!!! TTTTGAAGTTTACTTCACTT+CGG + chr6_4:11648197-11648216 Msa0977090:CDS 25.0%
! TCGGCGTATATATTATAATA+CGG + chr6_4:11648303-11648322 Msa0977090:CDS 25.0%
! TGAGAATGTTGAAAATGATA+AGG + chr6_4:11648330-11648349 Msa0977090:CDS 25.0%
! TTCTTCAATTTATTCAATGC+AGG - chr6_4:11648454-11648473 None:intergenic 25.0%
!! TACTCAAAGCTTTTATGTTT+TGG - chr6_4:11649089-11649108 None:intergenic 25.0%
! GAGATAAAAAATTCCGAATA+TGG - chr6_4:11649198-11649217 None:intergenic 25.0%
! TATCTAGATAGATAGTCAAA+TGG - chr6_4:11649243-11649262 None:intergenic 25.0%
! TACTTGTTTAATTGTACCTT+TGG - chr6_4:11649457-11649476 None:intergenic 25.0%
!! ACAAGTAGAGTATTATATAG+GGG + chr6_4:11649470-11649489 Msa0977090:intron 25.0%
! AAACTGAATCTCATAAAACA+GGG - chr6_4:11649669-11649688 None:intergenic 25.0%
! TAAACTGAATCTCATAAAAC+AGG - chr6_4:11649670-11649689 None:intergenic 25.0%
! TCAGTTTAATCATTATGCTT+CGG + chr6_4:11649682-11649701 Msa0977090:intron 25.0%
!!! GTTTTTCAGTTTGTTGATTT+TGG - chr6_4:11649936-11649955 None:intergenic 25.0%
! ATATTTATTTGATCCTTCCT+CGG + chr6_4:11650205-11650224 Msa0977090:intron 25.0%
!! TTGTAATTTTATCACTCAAC+CGG - chr6_4:11650301-11650320 None:intergenic 25.0%
!!! CTACAAAATTTTGATGCAAT+TGG - chr6_4:11650406-11650425 None:intergenic 25.0%
! ATCATTCAATGAATACAACA+CGG - chr6_4:11650446-11650465 None:intergenic 25.0%
! ATAGTCACAATTCAAAGAAA+CGG - chr6_4:11650497-11650516 None:intergenic 25.0%
! TTTCTTTGAATTGTGACTAT+TGG + chr6_4:11650497-11650516 Msa0977090:intron 25.0%
! TAGAAATGATGAAAACGTAA+AGG - chr6_4:11650575-11650594 None:intergenic 25.0%
! ATGAAACTATCTACAAATCA+GGG - chr6_4:11650662-11650681 None:intergenic 25.0%
! ATCTTAATTACCAAAAGGTA+GGG + chr6_4:11650694-11650713 Msa0977090:CDS 25.0%
! TCATCAATGAATATGATTGA+TGG - chr6_4:11650909-11650928 None:intergenic 25.0%
! CAAAGTTGACAAAAAAAAAG+TGG - chr6_4:11651136-11651155 None:intergenic 25.0%
! TGATTCAGGATTTGAAAAAT+AGG + chr6_4:11651304-11651323 Msa0977090:intron 25.0%
! ACATCTAAATTGTTTGACAA+TGG - chr6_4:11651365-11651384 None:intergenic 25.0%
! TTTAGTATATACTGTCTACA+TGG + chr6_4:11651422-11651441 Msa0977090:intron 25.0%
! TAAATATTCAACGTGTTCAT+TGG + chr6_4:11651449-11651468 Msa0977090:intron 25.0%
! ATCTAACAAAGAATCATCAT+TGG - chr6_4:11651910-11651929 None:intergenic 25.0%
! TAAAATCAAATAGTGCATGA+AGG + chr6_4:11652074-11652093 Msa0977090:intron 25.0%
!! TCTGAAGTAGTTATATCTAA+GGG + chr6_4:11652207-11652226 Msa0977090:intron 25.0%
!! TGATGTATTTGAGTTAACTA+TGG + chr6_4:11652241-11652260 Msa0977090:intron 25.0%
!! ATGTTATTCTAAAGAGCTTA+TGG - chr6_4:11652322-11652341 None:intergenic 25.0%
!!! GAAAGCATTTATGATATAAG+CGG + chr6_4:11652428-11652447 Msa0977090:intron 25.0%
!! TTCAATGATTGATAACCTAA+TGG - chr6_4:11652864-11652883 None:intergenic 25.0%
! CAATCATTGAATTCATGATT+TGG + chr6_4:11652873-11652892 Msa0977090:exon 25.0%
! ATTGTACAAGTAAATTTGAC+AGG - chr6_4:11652903-11652922 None:intergenic 25.0%
! AATAAGTGTGAACAATGAAA+AGG - chr6_4:11652931-11652950 None:intergenic 25.0%
! TAACCTGTAAACAAATACAA+CGG - chr6_4:11653029-11653048 None:intergenic 25.0%
ATTGTGTAGAATTCAAGAAG+TGG - chr6_4:11647542-11647561 None:intergenic 30.0%
GAAATGATTGAATGTGGAAA+TGG - chr6_4:11647577-11647596 None:intergenic 30.0%
TTCAGAGAAATGATTGAATG+TGG - chr6_4:11647583-11647602 None:intergenic 30.0%
!! TTTTCTTTACCTTGTTGTAC+TGG + chr6_4:11647728-11647747 Msa0977090:CDS 30.0%
! TTTCTTTACCTTGTTGTACT+GGG + chr6_4:11647729-11647748 Msa0977090:CDS 30.0%
!!! AGGAATTTTAGGGTTTATAG+AGG + chr6_4:11647782-11647801 Msa0977090:CDS 30.0%
TCATTGAGGTTTCAACAAAA+TGG + chr6_4:11647911-11647930 Msa0977090:CDS 30.0%
! ACTTGTTAGTAGTAGAAGTA+GGG + chr6_4:11647955-11647974 Msa0977090:CDS 30.0%
GAAGAATGATTATGGTAAAG+GGG + chr6_4:11647985-11648004 Msa0977090:CDS 30.0%
AAGAATGATTATGGTAAAGG+GGG + chr6_4:11647986-11648005 Msa0977090:CDS 30.0%
! TATTGGTTATGAGGATGAAA+AGG + chr6_4:11648065-11648084 Msa0977090:CDS 30.0%
ATTGGTTATGAGGATGAAAA+GGG + chr6_4:11648066-11648085 Msa0977090:CDS 30.0%
!! TCTTGAATCTGTTTTGAATG+AGG + chr6_4:11648093-11648112 Msa0977090:CDS 30.0%
AGTGAAAATTGTTCCGTATT+CGG + chr6_4:11648222-11648241 Msa0977090:CDS 30.0%
!!! GAGAAAGTTTTAGTTGAAGA+GGG + chr6_4:11648277-11648296 Msa0977090:CDS 30.0%
!!! AGAAAGTTTTAGTTGAAGAG+GGG + chr6_4:11648278-11648297 Msa0977090:CDS 30.0%
! AATTCCTTCTTAGTTTGATG+AGG + chr6_4:11648542-11648561 Msa0977090:CDS 30.0%
! ATTCCTTCTTAGTTTGATGA+GGG + chr6_4:11648543-11648562 Msa0977090:CDS 30.0%
! AGGTAACAATCTCATCTTTT+AGG + chr6_4:11648788-11648807 Msa0977090:intron 30.0%
CCTGATGAGATAAATATCAT+TGG - chr6_4:11648864-11648883 None:intergenic 30.0%
CCAATGATATTTATCTCATC+AGG + chr6_4:11648861-11648880 Msa0977090:intron 30.0%
!! GTTTCTAGTATTTCGTTAAC+TGG + chr6_4:11648885-11648904 Msa0977090:intron 30.0%
! AATGGTTAAGTAAGACCTTT+TGG + chr6_4:11648979-11648998 Msa0977090:intron 30.0%
CATCTTTGTATGTTACCAAA+AGG - chr6_4:11648997-11649016 None:intergenic 30.0%
!! CTTTTGGTAACATACAAAGA+TGG + chr6_4:11648995-11649014 Msa0977090:intron 30.0%
AGAAAGTTCAACTAACTTCT+TGG + chr6_4:11649119-11649138 Msa0977090:intron 30.0%
TTCAACTAACTTCTTGGTTT+AGG + chr6_4:11649125-11649144 Msa0977090:intron 30.0%
AAGTAAATCATATATTCCCG+AGG + chr6_4:11649319-11649338 Msa0977090:intron 30.0%
TCTTTGAATCACAAAATGTC+AGG + chr6_4:11649357-11649376 Msa0977090:intron 30.0%
! CAAGTAGAGTATTATATAGG+GGG + chr6_4:11649471-11649490 Msa0977090:intron 30.0%
AACTGAATCTCATAAAACAG+GGG - chr6_4:11649668-11649687 None:intergenic 30.0%
GTCAAAAATTAAAGTTACGG+TGG - chr6_4:11649790-11649809 None:intergenic 30.0%
TGACACACACAAGTTTAATT+TGG - chr6_4:11650010-11650029 None:intergenic 30.0%
CAATCTATAGCAGTTTGAAT+TGG - chr6_4:11650266-11650285 None:intergenic 30.0%
CAATTCAAACTGCTATAGAT+TGG + chr6_4:11650264-11650283 Msa0977090:intron 30.0%
! TTAAAAGGGTATAGTACATG+TGG + chr6_4:11650351-11650370 Msa0977090:intron 30.0%
!!! TCAACTCGCTATAGTTTTAA+GGG - chr6_4:11650534-11650553 None:intergenic 30.0%
!! TTCAACTCGCTATAGTTTTA+AGG - chr6_4:11650535-11650554 None:intergenic 30.0%
CATGAAACTATCTACAAATC+AGG - chr6_4:11650663-11650682 None:intergenic 30.0%
GATCTTAATTACCAAAAGGT+AGG + chr6_4:11650693-11650712 Msa0977090:CDS 30.0%
TCTTAATTACCAAAAGGTAG+GGG + chr6_4:11650695-11650714 Msa0977090:CDS 30.0%
! ATTTCCTTGCTGTACTAAAA+AGG - chr6_4:11650881-11650900 None:intergenic 30.0%
ATTCATTGATGAACTTGATG+CGG + chr6_4:11650917-11650936 Msa0977090:CDS 30.0%
TCAATATCTTAAGATGCATG+TGG + chr6_4:11651056-11651075 Msa0977090:intron 30.0%
GGCTACATTAAGTTTAAAAG+AGG - chr6_4:11651111-11651130 None:intergenic 30.0%
GTTGACAAAAAAAAAGTGGT+TGG - chr6_4:11651132-11651151 None:intergenic 30.0%
GATTCAAATCATGAATCAGA+AGG - chr6_4:11651330-11651349 None:intergenic 30.0%
TGATTCAAATCCATCCATTT+CGG - chr6_4:11651564-11651583 None:intergenic 30.0%
ATTTGAATCAGAAATGAGAG+TGG + chr6_4:11651574-11651593 Msa0977090:CDS 30.0%
!! AGCTGATTTTATATGCTATC+TGG + chr6_4:11652119-11652138 Msa0977090:intron 30.0%
!! GCTGATTTTATATGCTATCT+GGG + chr6_4:11652120-11652139 Msa0977090:intron 30.0%
!! CTCTGAAGTAGTTATATCTA+AGG + chr6_4:11652206-11652225 Msa0977090:intron 30.0%
GAATCAATGATAAGCAACTA+AGG + chr6_4:11652745-11652764 Msa0977090:CDS 30.0%
AAGGTCTAGTAAAATAAGCA+AGG + chr6_4:11652764-11652783 Msa0977090:CDS 30.0%
ATTCAAGAAGTGGAATCTTG+TGG - chr6_4:11647532-11647551 None:intergenic 35.0%
AGGTTTCAACAAAATGGTGT+TGG + chr6_4:11647917-11647936 Msa0977090:CDS 35.0%
CTACTTCTACTACTAACAAG+TGG - chr6_4:11647956-11647975 None:intergenic 35.0%
! CACTTGTTAGTAGTAGAAGT+AGG + chr6_4:11647954-11647973 Msa0977090:CDS 35.0%
AGAATGATTATGGTAAAGGG+GGG + chr6_4:11647987-11648006 Msa0977090:CDS 35.0%
! AGAGATTTTCGTTGAGATTG+CGG + chr6_4:11648029-11648048 Msa0977090:CDS 35.0%
ATAACCAATAACCGTAACCT+CGG - chr6_4:11648055-11648074 None:intergenic 35.0%
!! GAATCTGTTTTGAATGAGGT+TGG + chr6_4:11648097-11648116 Msa0977090:CDS 35.0%
TAGGAAAAATATTAGGACGG+TGG + chr6_4:11648129-11648148 Msa0977090:CDS 35.0%
! GAATACGGAACAATTTTCAC+TGG - chr6_4:11648223-11648242 None:intergenic 35.0%
!!! GGAGAAAGTTTTAGTTGAAG+AGG + chr6_4:11648276-11648295 Msa0977090:CDS 35.0%
ACAAGTAGTAGATGTTTCGA+TGG + chr6_4:11648375-11648394 Msa0977090:CDS 35.0%
AGTAGATGTTTCGATGGATA+AGG + chr6_4:11648381-11648400 Msa0977090:CDS 35.0%
GATGGATAAGGATATAGACA+AGG + chr6_4:11648393-11648412 Msa0977090:CDS 35.0%
! AAGAAATTCTCTAAGAGACG+AGG + chr6_4:11648469-11648488 Msa0977090:CDS 35.0%
!! GTCATGATCTATTTTTCTCG+TGG - chr6_4:11648518-11648537 None:intergenic 35.0%
TTTCCCTCATCAAACTAAGA+AGG - chr6_4:11648549-11648568 None:intergenic 35.0%
! TCTTAGTTTGATGAGGGAAA+AGG + chr6_4:11648549-11648568 Msa0977090:CDS 35.0%
! CTTAGTTTGATGAGGGAAAA+GGG + chr6_4:11648550-11648569 Msa0977090:CDS 35.0%
! TTAGTTTGATGAGGGAAAAG+GGG + chr6_4:11648551-11648570 Msa0977090:CDS 35.0%
TACCTTTGATTCCTTTGATG+TGG + chr6_4:11648650-11648669 Msa0977090:CDS 35.0%
CGATATATAAGCCACATCAA+AGG - chr6_4:11648664-11648683 None:intergenic 35.0%
AAACCTAATAGTCAGACAGT+TGG + chr6_4:11648718-11648737 Msa0977090:CDS 35.0%
AATCCAACTGTCTGACTATT+AGG - chr6_4:11648724-11648743 None:intergenic 35.0%
GTTGGATTTGAAGATGTTCA+AGG + chr6_4:11648736-11648755 Msa0977090:CDS 35.0%
TTCCATGGGATTATAATCAG+TGG + chr6_4:11649039-11649058 Msa0977090:intron 35.0%
! TACCACTGATTATAATCCCA+TGG - chr6_4:11649044-11649063 None:intergenic 35.0%
!!! CAGTGGTAGATTTTAGCTTT+TGG + chr6_4:11649056-11649075 Msa0977090:intron 35.0%
!!! GTAGATTTTAGCTTTTGGCA+CGG + chr6_4:11649061-11649080 Msa0977090:intron 35.0%
!!! GGATTTTTGAGATGTGACAT+TGG + chr6_4:11649146-11649165 Msa0977090:intron 35.0%
CTAAGAATCGTGATTAGCAA+TGG - chr6_4:11649553-11649572 None:intergenic 35.0%
AAAATTAAAGTTACGGTGGC+AGG - chr6_4:11649786-11649805 None:intergenic 35.0%
ACTGTAAACCTCACCTATAT+AGG + chr6_4:11649843-11649862 Msa0977090:intron 35.0%
CTGTAAACCTCACCTATATA+GGG + chr6_4:11649844-11649863 Msa0977090:intron 35.0%
TGTAAACCTCACCTATATAG+GGG + chr6_4:11649845-11649864 Msa0977090:intron 35.0%
ATTTATGAGCACCCCTATAT+AGG - chr6_4:11649859-11649878 None:intergenic 35.0%
!!! TTACTTTTTTCTTCCGAGGA+AGG - chr6_4:11650221-11650240 None:intergenic 35.0%
!!! GTCTTTACTTTTTTCTTCCG+AGG - chr6_4:11650225-11650244 None:intergenic 35.0%
TAAAGACTTAAACCGAGACA+AGG + chr6_4:11650238-11650257 Msa0977090:intron 35.0%
TTTGAATTGGATCCTTGTCT+CGG - chr6_4:11650253-11650272 None:intergenic 35.0%
! TAGATTGGATTAGAGTGAAC+CGG + chr6_4:11650279-11650298 Msa0977090:intron 35.0%
TAGATAGTTTCATGTCTGCA+AGG + chr6_4:11650669-11650688 Msa0977090:intron 35.0%
AGATAGTTTCATGTCTGCAA+GGG + chr6_4:11650670-11650689 Msa0977090:intron 35.0%
AGGGGATCTTAATTACCAAA+AGG + chr6_4:11650689-11650708 Msa0977090:CDS 35.0%
AAACATTTCAACGAACTCAC+TGG - chr6_4:11650829-11650848 None:intergenic 35.0%
GAGTTCGTTGAAATGTTTGT+TGG + chr6_4:11650831-11650850 Msa0977090:CDS 35.0%
! GTTGAAATGTTTGTTGGAAG+AGG + chr6_4:11650837-11650856 Msa0977090:CDS 35.0%
GAAGAAGCTTCAATGATGAA+CGG + chr6_4:11650955-11650974 Msa0977090:CDS 35.0%
AAGAAGCTTCAATGATGAAC+GGG + chr6_4:11650956-11650975 Msa0977090:CDS 35.0%
GCAACAATTGATTGAACTCA+TGG + chr6_4:11651030-11651049 Msa0977090:intron 35.0%
! TTCTTTAAAGGTCAGCTTAG+AGG - chr6_4:11651518-11651537 None:intergenic 35.0%
!! TTCTCGAGGAAAGTATTTGT+AGG + chr6_4:11651659-11651678 Msa0977090:CDS 35.0%
!! TCTCGAGGAAAGTATTTGTA+GGG + chr6_4:11651660-11651679 Msa0977090:CDS 35.0%
ATATTAGCTGTGCATTTGAG+AGG + chr6_4:11651710-11651729 Msa0977090:CDS 35.0%
TTAATTGCCACAGTTACTGA+TGG + chr6_4:11651770-11651789 Msa0977090:CDS 35.0%
ATCATGTCACATAAGCACTT+AGG - chr6_4:11652481-11652500 None:intergenic 35.0%
TGAAGGTGAAAAGTCAATGA+AGG - chr6_4:11652582-11652601 None:intergenic 35.0%
GCTATTGAAAGAGCAAAGTT+TGG + chr6_4:11652723-11652742 Msa0977090:CDS 35.0%
AGTAAAATAAGCAAGGAGCT+TGG + chr6_4:11652771-11652790 Msa0977090:CDS 35.0%
AGGAAACAAGATGACATACA+AGG + chr6_4:11652837-11652856 Msa0977090:CDS 35.0%
AAGCCGTTGTATTTGTTTAC+AGG + chr6_4:11653023-11653042 Msa0977090:three_prime_UTR 35.0%
GAAAATGACCCAGTACAACA+AGG - chr6_4:11647740-11647759 None:intergenic 40.0%
!! GGTCATTTTCGACACCAAAT+AGG + chr6_4:11647750-11647769 Msa0977090:CDS 40.0%
! GGTTACGGTTATTGGTTATG+AGG + chr6_4:11648056-11648075 Msa0977090:CDS 40.0%
! ATGAGGTTGGAGTGTTTGTT+AGG + chr6_4:11648110-11648129 Msa0977090:CDS 40.0%
TTGATTGCGAGTCTTCGAAA+TGG + chr6_4:11648247-11648266 Msa0977090:CDS 40.0%
TGATTGCGAGTCTTCGAAAT+GGG + chr6_4:11648248-11648267 Msa0977090:CDS 40.0%
!! TTTTAGTTGAAGAGGGGTCT+CGG + chr6_4:11648284-11648303 Msa0977090:CDS 40.0%
AGTGAGAATGCTGTAAGATC+TGG + chr6_4:11648421-11648440 Msa0977090:CDS 40.0%
TAGTTTGATGAGGGAAAAGG+GGG + chr6_4:11648552-11648571 Msa0977090:CDS 40.0%
AAAGGGGGTTACATTTAGCT+CGG + chr6_4:11648567-11648586 Msa0977090:CDS 40.0%
TGATAACTGTGATCACACTG+TGG + chr6_4:11648626-11648645 Msa0977090:CDS 40.0%
AGCCACATCAAAGGAATCAA+AGG - chr6_4:11648655-11648674 None:intergenic 40.0%
TTCTGCAAAAGTAGAGCTCA+TGG + chr6_4:11648765-11648784 Msa0977090:CDS 40.0%
CTTTGGTACCACAAAAGCAA+GGG - chr6_4:11649440-11649459 None:intergenic 40.0%
! GTAGAGTATTATATAGGGGG+TGG + chr6_4:11649474-11649493 Msa0977090:intron 40.0%
TCACGATTCTTAGCGTGTAT+TGG + chr6_4:11649560-11649579 Msa0977090:intron 40.0%
GGAGCATAGTATTTCAGTGA+CGG - chr6_4:11649615-11649634 None:intergenic 40.0%
AATCTCATAAAACAGGGGAG+AGG - chr6_4:11649663-11649682 None:intergenic 40.0%
! GATGAAAACGTAAAGGCATG+AGG - chr6_4:11650568-11650587 None:intergenic 40.0%
TCAGGGACAGTGTCAATATA+CGG - chr6_4:11650645-11650664 None:intergenic 40.0%
GATAGTTTCATGTCTGCAAG+GGG + chr6_4:11650671-11650690 Msa0977090:intron 40.0%
CTGGCAGATACTGTGAAAAA+GGG - chr6_4:11650810-11650829 None:intergenic 40.0%
ACTGGCAGATACTGTGAAAA+AGG - chr6_4:11650811-11650830 None:intergenic 40.0%
!! GAGACCTTTTTAGTACAGCA+AGG + chr6_4:11650874-11650893 Msa0977090:CDS 40.0%
ATTGATGAACTTGATGCGGT+TGG + chr6_4:11650921-11650940 Msa0977090:CDS 40.0%
TTGTCATTGCAGCAACTAAC+CGG + chr6_4:11651597-11651616 Msa0977090:CDS 40.0%
!! CTCGAGGAAAGTATTTGTAG+GGG + chr6_4:11651661-11651680 Msa0977090:CDS 40.0%
! AAGCAGTTGTGAGGCTATTT+TGG + chr6_4:11652267-11652286 Msa0977090:intron 40.0%
ATAAGCACTTAGGCATGGTT+TGG - chr6_4:11652471-11652490 None:intergenic 40.0%
GAAAAGTCAATGAAGGCAGA+GGG - chr6_4:11652575-11652594 None:intergenic 40.0%
TGAAAAGTCAATGAAGGCAG+AGG - chr6_4:11652576-11652595 None:intergenic 40.0%
AATCCATATTTGCACTCTGC+AGG + chr6_4:11652666-11652685 Msa0977090:intron 40.0%
TGTGGCAAGGGAAGATATAA+TGG + chr6_4:11652698-11652717 Msa0977090:CDS 40.0%
TCACTTCTTCCCATCAATGA+TGG - chr6_4:11652816-11652835 None:intergenic 40.0%
CATTGATGGGAAGAAGTGAT+AGG + chr6_4:11652817-11652836 Msa0977090:CDS 40.0%
GATGACATACAAGGACCATT+AGG + chr6_4:11652846-11652865 Msa0977090:CDS 40.0%
!!! CAACGGCTTCTCATTTTTTG+TGG - chr6_4:11653012-11653031 None:intergenic 40.0%
! AATCTTGTGGTGGAAGAGGA+AGG - chr6_4:11647519-11647538 None:intergenic 45.0%
CAAGAAGTGGAATCTTGTGG+TGG - chr6_4:11647529-11647548 None:intergenic 45.0%
CTCGCAATCAAGTCCGAATA+CGG - chr6_4:11648238-11648257 None:intergenic 45.0%
GAGTCTTCGAAATGGGAATG+TGG + chr6_4:11648255-11648274 Msa0977090:CDS 45.0%
GAGAATGCTGTAAGATCTGG+TGG + chr6_4:11648424-11648443 Msa0977090:CDS 45.0%
TTAGGTTTCCGCTTCTTAGC+TGG - chr6_4:11648706-11648725 None:intergenic 45.0%
TGCAAAAGTAGAGCTCATGG+AGG + chr6_4:11648768-11648787 Msa0977090:CDS 45.0%
ATCTGACATATCAGAGCCTC+GGG - chr6_4:11649338-11649357 None:intergenic 45.0%
GATCTGACATATCAGAGCCT+CGG - chr6_4:11649339-11649358 None:intergenic 45.0%
!! AGCTCATACCCTTGCTTTTG+TGG + chr6_4:11649429-11649448 Msa0977090:intron 45.0%
CCTTTGGTACCACAAAAGCA+AGG - chr6_4:11649441-11649460 None:intergenic 45.0%
!! CCTTGCTTTTGTGGTACCAA+AGG + chr6_4:11649438-11649457 Msa0977090:intron 45.0%
TATATAGGGGGTGGCGTTTA+AGG + chr6_4:11649483-11649502 Msa0977090:intron 45.0%
CAAAACACAAAGCGGTTCAG+AGG - chr6_4:11649590-11649609 None:intergenic 45.0%
TGACGGTGCAAAACACAAAG+CGG - chr6_4:11649598-11649617 None:intergenic 45.0%
! TTTCCCATTGGGTTGTTGCT+TGG - chr6_4:11649708-11649727 None:intergenic 45.0%
ACTTGGCTGTGTTTCCCATT+GGG - chr6_4:11649719-11649738 None:intergenic 45.0%
GTTGCGTAGCAGTACACAAA+TGG - chr6_4:11649812-11649831 None:intergenic 45.0%
AGTAATGTCTTGCCAGTTCC+TGG - chr6_4:11650756-11650775 None:intergenic 45.0%
TTACTTGCACGTGCAATAGC+AGG + chr6_4:11650771-11650790 Msa0977090:CDS 45.0%
TACTTGCACGTGCAATAGCA+GGG + chr6_4:11650772-11650791 Msa0977090:CDS 45.0%
AACTTGCCTGATTGAGCGTT+TGG - chr6_4:11650983-11651002 None:intergenic 45.0%
GATGTAGTTGCTGACCGAAA+TGG + chr6_4:11651547-11651566 Msa0977090:intron 45.0%
TAGTTGCTGACCGAAATGGA+TGG + chr6_4:11651551-11651570 Msa0977090:intron 45.0%
TACTTTCCTCGAGAAACGAC+CGG - chr6_4:11651654-11651673 None:intergenic 45.0%
TTTCTCCTTCCTTCTTCGTC+AGG - chr6_4:11651689-11651708 None:intergenic 45.0%
GCATTTGAGAGGAGTTCCTT+TGG + chr6_4:11651721-11651740 Msa0977090:CDS 45.0%
TTTGAGAGGAGTTCCTTTGG+AGG + chr6_4:11651724-11651743 Msa0977090:CDS 45.0%
ATGTTAGCATCCTCCTCCAA+AGG - chr6_4:11651740-11651759 None:intergenic 45.0%
TACGAGACCATCAGTAACTG+TGG - chr6_4:11651780-11651799 None:intergenic 45.0%
ACAGTTACTGATGGTCTCGT+AGG + chr6_4:11651779-11651798 Msa0977090:CDS 45.0%
GTCACATAAGCACTTAGGCA+TGG - chr6_4:11652476-11652495 None:intergenic 45.0%
CTTCCACGTTCACTCTTAGT+TGG + chr6_4:11652516-11652535 Msa0977090:intron 45.0%
CTACCTGCAGAGTGCAAATA+TGG - chr6_4:11652672-11652691 None:intergenic 45.0%
AGGTAGTGAAACTGTGGCAA+GGG + chr6_4:11652686-11652705 Msa0977090:intron 45.0%
CCATCAATGATGGCATCCAA+GGG - chr6_4:11652806-11652825 None:intergenic 45.0%
CCTTGGATGCCATCATTGAT+GGG + chr6_4:11652804-11652823 Msa0977090:CDS 45.0%
! GTGGAATCTTGTGGTGGAAG+AGG - chr6_4:11647523-11647542 None:intergenic 50.0%
GATTATGGTAAAGGGGGGAG+TGG + chr6_4:11647992-11648011 Msa0977090:CDS 50.0%
GTAAAGGGGGGAGTGGTAAT+AGG + chr6_4:11647999-11648018 Msa0977090:CDS 50.0%
GGCTCCTCAATCTGTGTTAG+CGG + chr6_4:11648588-11648607 Msa0977090:CDS 50.0%
ATCGCCGCTAACACAGATTG+AGG - chr6_4:11648595-11648614 None:intergenic 50.0%
AATCTGTGTTAGCGGCGATG+AGG + chr6_4:11648596-11648615 Msa0977090:CDS 50.0%
CTGCTAGTCCAGCTAAGAAG+CGG + chr6_4:11648695-11648714 Msa0977090:CDS 50.0%
CACTTGGCTGTGTTTCCCAT+TGG - chr6_4:11649720-11649739 None:intergenic 50.0%
CAATGGGAAACACAGCCAAG+TGG + chr6_4:11649718-11649737 Msa0977090:intron 50.0%
GATGGGCAAAACACTCCAAG+AGG - chr6_4:11649760-11649779 None:intergenic 50.0%
TGAGCACCCCTATATAGGTG+AGG - chr6_4:11649854-11649873 None:intergenic 50.0%
!! GTAGCTTTGCCCCTACCTTT+TGG - chr6_4:11650707-11650726 None:intergenic 50.0%
!! CCTAGAGGAGTGTTGCTTGT+CGG + chr6_4:11650726-11650745 Msa0977090:CDS 50.0%
AATGTCTTGCCAGTTCCTGG+AGG - chr6_4:11650753-11650772 None:intergenic 50.0%
ACTTGCACGTGCAATAGCAG+GGG + chr6_4:11650773-11650792 Msa0977090:CDS 50.0%
GATGAACTTGATGCGGTTGG+TGG + chr6_4:11650924-11650943 Msa0977090:CDS 50.0%
ACTTTCCTCGAGAAACGACC+GGG - chr6_4:11651653-11651672 None:intergenic 50.0%
TCTTCGAGCAGCAAGCAAAG+CGG - chr6_4:11651834-11651853 None:intergenic 50.0%
CTATGGCACAAGCAGTTGTG+AGG + chr6_4:11652258-11652277 Msa0977090:intron 50.0%
TGGCCAACTAAGAGTGAACG+TGG - chr6_4:11652522-11652541 None:intergenic 50.0%
CTCTGCAGGTAGTGAAACTG+TGG + chr6_4:11652680-11652699 Msa0977090:intron 50.0%
CAGGTAGTGAAACTGTGGCA+AGG + chr6_4:11652685-11652704 Msa0977090:intron 50.0%
AGCTTGGTAAGCTGTTCCCT+TGG + chr6_4:11652787-11652806 Msa0977090:CDS 50.0%
CCCTTGGATGCCATCATTGA+TGG + chr6_4:11652803-11652822 Msa0977090:CDS 50.0%
CCCATCAATGATGGCATCCA+AGG - chr6_4:11652807-11652826 None:intergenic 50.0%
TTTCGTTGAGATTGCGGCCG+AGG + chr6_4:11648035-11648054 Msa0977090:CDS 55.0%
TGAGATTGCGGCCGAGGTTA+CGG + chr6_4:11648041-11648060 Msa0977090:CDS 55.0%
GACGAGGTTCGATTCCTGAG+TGG + chr6_4:11648485-11648504 Msa0977090:CDS 55.0%
CTCGTGGAATACTGCCACTC+AGG - chr6_4:11648502-11648521 None:intergenic 55.0%
TCGGCCAAGCAACAACCCAA+TGG + chr6_4:11649701-11649720 Msa0977090:intron 55.0%
CGGCCAAGCAACAACCCAAT+GGG + chr6_4:11649702-11649721 Msa0977090:intron 55.0%
CAAGAGGCCAGCCTTAAGGT+GGG - chr6_4:11649744-11649763 None:intergenic 55.0%
ACTCCAAGAGGCCAGCCTTA+AGG - chr6_4:11649748-11649767 None:intergenic 55.0%
GTTACGGTGGCAGGACAGAT+GGG - chr6_4:11649777-11649796 None:intergenic 55.0%
AGTTACGGTGGCAGGACAGA+TGG - chr6_4:11649778-11649797 None:intergenic 55.0%
GTAGGGGCAAAGCTACCTAG+AGG + chr6_4:11650711-11650730 Msa0977090:CDS 55.0%
CCGACAAGCAACACTCCTCT+AGG - chr6_4:11650729-11650748 None:intergenic 55.0%
ACGGGACCAAACGCTCAATC+AGG + chr6_4:11650974-11650993 Msa0977090:CDS 55.0%
AACTAACCGGCCAGAAGCCT+TGG + chr6_4:11651610-11651629 Msa0977090:CDS 55.0%
GTAGGGGAACCTGACGAAGA+AGG + chr6_4:11651677-11651696 Msa0977090:CDS 55.0%
GGGAACCTGACGAAGAAGGA+AGG + chr6_4:11651681-11651700 Msa0977090:CDS 55.0%
! GAGAGGAGTTCCTTTGGAGG+AGG + chr6_4:11651727-11651746 Msa0977090:CDS 55.0%
! GCTTTGCTTGCTGCTCGAAG+AGG + chr6_4:11651833-11651852 Msa0977090:CDS 55.0%
GGTGTCTGTAGGGAGGCTAA+TGG - chr6_4:11652542-11652561 None:intergenic 55.0%
!! AAGCAGCAGGGGTGTCTGTA+GGG - chr6_4:11652552-11652571 None:intergenic 55.0%
GCGGCCGAGGTTACGGTTAT+TGG + chr6_4:11648048-11648067 Msa0977090:CDS 60.0%
CAGCCAAGTGGCCCACCTTA+AGG + chr6_4:11649730-11649749 Msa0977090:intron 60.0%
CAGCCTTAAGGTGGGCCACT+TGG - chr6_4:11649736-11649755 None:intergenic 60.0%
CAAGTGGCCCACCTTAAGGC+TGG + chr6_4:11649734-11649753 Msa0977090:intron 60.0%
CCAAGAGGCCAGCCTTAAGG+TGG - chr6_4:11649745-11649764 None:intergenic 60.0%
!! CCACCTTAAGGCTGGCCTCT+TGG + chr6_4:11649742-11649761 Msa0977090:intron 60.0%
!! GTGTTGCTTGTCGGTCCTCC+AGG + chr6_4:11650735-11650754 Msa0977090:CDS 60.0%
CTTGTCGGTCCTCCAGGAAC+TGG + chr6_4:11650741-11650760 Msa0977090:CDS 60.0%
CGTGCAATAGCAGGGGAAGC+AGG + chr6_4:11650780-11650799 Msa0977090:CDS 60.0%
CTGGATCCAAGGCTTCTGGC+CGG - chr6_4:11651619-11651638 None:intergenic 60.0%
AGGGCTGGATCCAAGGCTTC+TGG - chr6_4:11651623-11651642 None:intergenic 60.0%
ACGACACAGGGCTGGATCCA+AGG - chr6_4:11651630-11651649 None:intergenic 60.0%
GAAACGACCGGGACGACACA+GGG - chr6_4:11651642-11651661 None:intergenic 60.0%
AGAAACGACCGGGACGACAC+AGG - chr6_4:11651643-11651662 None:intergenic 60.0%
!! GAAGCAGCAGGGGTGTCTGT+AGG - chr6_4:11652553-11652572 None:intergenic 60.0%
AAGGCAGAGGGAAGCAGCAG+GGG - chr6_4:11652563-11652582 None:intergenic 60.0%
GAAGGCAGAGGGAAGCAGCA+GGG - chr6_4:11652564-11652583 None:intergenic 60.0%
TGAAGGCAGAGGGAAGCAGC+AGG - chr6_4:11652565-11652584 None:intergenic 60.0%
!! GATGCGGTTGGTGGCAAGCG+TGG + chr6_4:11650933-11650952 Msa0977090:CDS 65.0%
GATCCAGCCCTGTGTCGTCC+CGG + chr6_4:11651632-11651651 Msa0977090:CDS 65.0%
GTCGTCCCGGTCGTTTCTCG+AGG + chr6_4:11651645-11651664 Msa0977090:CDS 65.0%
!! CAGCAGGGGTGTCTGTAGGG+AGG - chr6_4:11652549-11652568 None:intergenic 65.0%
CGACCGGGACGACACAGGGC+TGG - chr6_4:11651638-11651657 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 11647505 11653106 11647505 ID=Msa0977090;Name=Msa0977090
chr6_4 mRNA 11647505 11653106 11647505 ID=Msa0977090-mRNA-1;Parent=Msa0977090;Name=Msa0977090-mRNA-1;_AED=0.07;_eAED=0.07;_QI=214|0.66|0.5|1|1|1|4|216|632
chr6_4 exon 11647505 11648789 11647505 ID=Msa0977090-mRNA-1:exon:4113;Parent=Msa0977090-mRNA-1
chr6_4 exon 11650672 11650995 11650672 ID=Msa0977090-mRNA-1:exon:4114;Parent=Msa0977090-mRNA-1
chr6_4 exon 11651554 11651854 11651554 ID=Msa0977090-mRNA-1:exon:4115;Parent=Msa0977090-mRNA-1
chr6_4 exon 11652688 11653106 11652688 ID=Msa0977090-mRNA-1:exon:4116;Parent=Msa0977090-mRNA-1
chr6_4 five_prime_UTR 11647505 11647718 11647505 ID=Msa0977090-mRNA-1:five_prime_utr;Parent=Msa0977090-mRNA-1
chr6_4 CDS 11647719 11648789 11647719 ID=Msa0977090-mRNA-1:cds;Parent=Msa0977090-mRNA-1
chr6_4 CDS 11650672 11650995 11650672 ID=Msa0977090-mRNA-1:cds;Parent=Msa0977090-mRNA-1
chr6_4 CDS 11651554 11651854 11651554 ID=Msa0977090-mRNA-1:cds;Parent=Msa0977090-mRNA-1
chr6_4 CDS 11652688 11652890 11652688 ID=Msa0977090-mRNA-1:cds;Parent=Msa0977090-mRNA-1
chr6_4 three_prime_UTR 11652891 11653106 11652891 ID=Msa0977090-mRNA-1:three_prime_utr;Parent=Msa0977090-mRNA-1
Gene Sequence

>Msa0977090

ATGGTTTGTTTTTCTTTACCTTGTTGTACTGGGTCATTTTCGACACCAAATAGGTTAAAAATTAGGAATTTTAGGGTTTATAGAGGTTTATGCACTTCAATGAAGTTTAAGTTTAATCAATGCTATAATTTTGAAAATGGGTTTTTATGGAATAAGAAATTTGAGTATTATGGTAGAAAAAGTAGAAATTTTTCATTGAGGTTTCAACAAAATGGTGTTGGTAATGAAACTGAGCCACTTGTTAGTAGTAGAAGTAGGGATGATAAGAAGAATGATTATGGTAAAGGGGGGAGTGGTAATAGGTTGAAGAAGAGATTTTCGTTGAGATTGCGGCCGAGGTTACGGTTATTGGTTATGAGGATGAAAAGGGCTTCTCTTGAATCTGTTTTGAATGAGGTTGGAGTGTTTGTTAGGAAAAATATTAGGACGGTGGCGTTTGCTACATCGTTTTCGATTGTGTTTACACTTTGTTTTTTGTTTTTGAAGTTTACTTCACTTCGGCCAGTGAAAATTGTTCCGTATTCGGACTTGATTGCGAGTCTTCGAAATGGGAATGTGGAGAAAGTTTTAGTTGAAGAGGGGTCTCGGCGTATATATTATAATACGGTGTCTGAGAATGTTGAAAATGATAAGGTTTCTGATGAAGAAGAATCACAACAAGTAGTAGATGTTTCGATGGATAAGGATATAGACAAGGTTGTGAGTGAGAATGCTGTAAGATCTGGTGGAATTCCTGCATTGAATAAATTGAAGAAATTCTCTAAGAGACGAGGTTCGATTCCTGAGTGGCAGTATTCCACGAGAAAAATAGATCATGACGAAAAATTCCTTCTTAGTTTGATGAGGGAAAAGGGGGTTACATTTAGCTCGGCTCCTCAATCTGTGTTAGCGGCGATGAGGAGTACTTTGATAACTGTGATCACACTGTGGATACCTTTGATTCCTTTGATGTGGCTTATATATCGTCAACTTTCTGCTGCTAGTCCAGCTAAGAAGCGGAAACCTAATAGTCAGACAGTTGGATTTGAAGATGTTCAAGGTGTTGATTCTGCAAAAGTAGAGCTCATGGAGATAGTTTCATGTCTGCAAGGGGATCTTAATTACCAAAAGGTAGGGGCAAAGCTACCTAGAGGAGTGTTGCTTGTCGGTCCTCCAGGAACTGGCAAGACATTACTTGCACGTGCAATAGCAGGGGAAGCAGGTGTACCCTTTTTCACAGTATCTGCCAGTGAGTTCGTTGAAATGTTTGTTGGAAGAGGTGCTGCTAGAGTCAGAGACCTTTTTAGTACAGCAAGGAAATTTGCACCATCAATCATATTCATTGATGAACTTGATGCGGTTGGTGGCAAGCGTGGAAGAAGCTTCAATGATGAACGGGACCAAACGCTCAATCAGTTGCTGACCGAAATGGATGGATTTGAATCAGAAATGAGAGTGGTTGTCATTGCAGCAACTAACCGGCCAGAAGCCTTGGATCCAGCCCTGTGTCGTCCCGGTCGTTTCTCGAGGAAAGTATTTGTAGGGGAACCTGACGAAGAAGGAAGGAGAAAGATATTAGCTGTGCATTTGAGAGGAGTTCCTTTGGAGGAGGATGCTAACATCATATGTCATTTAATTGCCACAGTTACTGATGGTCTCGTAGGTGCTGATCTTGCAAACATCGTCAATGAATCCGCTTTGCTTGCTGCTCGAAGAGGTAGTGAAACTGTGGCAAGGGAAGATATAATGGAAGCTATTGAAAGAGCAAAGTTTGGAATCAATGATAAGCAACTAAGGTCTAGTAAAATAAGCAAGGAGCTTGGTAAGCTGTTCCCTTGGATGCCATCATTGATGGGAAGAAGTGATAGGAAACAAGATGACATACAAGGACCATTAGGTTATCAATCATTGAATTCATGA
Protein sequence

>Msa0977090

MVCFSLPCCTGSFSTPNRLKIRNFRVYRGLCTSMKFKFNQCYNFENGFLWNKKFEYYGRKSRNFSLRFQQNGVGNETEPLVSSRSRDDKKNDYGKGGSGNRLKKRFSLRLRPRLRLLVMRMKRASLESVLNEVGVFVRKNIRTVAFATSFSIVFTLCFLFLKFTSLRPVKIVPYSDLIASLRNGNVEKVLVEEGSRRIYYNTVSENVENDKVSDEEESQQVVDVSMDKDIDKVVSENAVRSGGIPALNKLKKFSKRRGSIPEWQYSTRKIDHDEKFLLSLMREKGVTFSSAPQSVLAAMRSTLITVITLWIPLIPLMWLIYRQLSAASPAKKRKPNSQTVGFEDVQGVDSAKVELMEIVSCLQGDLNYQKVGAKLPRGVLLVGPPGTGKTLLARAIAGEAGVPFFTVSASEFVEMFVGRGAARVRDLFSTARKFAPSIIFIDELDAVGGKRGRSFNDERDQTLNQLLTEMDGFESEMRVVVIAATNRPEALDPALCRPGRFSRKVFVGEPDEEGRRKILAVHLRGVPLEEDANIICHLIATVTDGLVGADLANIVNESALLAARRGSETVAREDIMEAIERAKFGINDKQLRSSKISKELGKLFPWMPSLMGRSDRKQDDIQGPLGYQSLNS*