Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183770 | sp|P76093|YNBD_ECOLI | 29.609 | 179 | 107 | 4 | 60 | 232 | 263 | 428 | 2.52e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183770 | A0A072W222 | 98.765 | 243 | 3 | 0 | 1 | 243 | 1 | 243 | 1.23e-174 | 489 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002690 | Msa0183770 | -0.805917 | 1.058801e-49 | -8.615850e-47 |
| Msa0004180 | Msa0183770 | -0.807894 | 4.043274e-50 | -8.615850e-47 |
| Msa0018010 | Msa0183770 | -0.827133 | 1.851262e-54 | -8.615850e-47 |
| Msa0028410 | Msa0183770 | -0.817936 | 2.545639e-52 | -8.615850e-47 |
| Msa0028450 | Msa0183770 | -0.800851 | 1.187392e-48 | -8.615850e-47 |
| Msa0032350 | Msa0183770 | -0.802679 | 5.004453e-49 | -8.615850e-47 |
| Msa0038750 | Msa0183770 | -0.842903 | 1.946337e-58 | -8.615850e-47 |
| Msa0042210 | Msa0183770 | -0.823289 | 1.500711e-53 | -8.615850e-47 |
| Msa0044080 | Msa0183770 | 0.926755 | 3.030381e-91 | -8.615850e-47 |
| Msa0047660 | Msa0183770 | -0.824912 | 6.241879e-54 | -8.615850e-47 |
| Msa0062160 | Msa0183770 | 0.810065 | 1.387408e-50 | -8.615850e-47 |
| Msa0069590 | Msa0183770 | -0.807085 | 6.005127e-50 | -8.615850e-47 |
| Msa0075080 | Msa0183770 | -0.805641 | 1.210160e-49 | -8.615850e-47 |
| Msa0075830 | Msa0183770 | -0.807467 | 4.983336e-50 | -8.615850e-47 |
| Msa0076550 | Msa0183770 | -0.810312 | 1.227404e-50 | -8.615850e-47 |
| Msa0076590 | Msa0183770 | -0.806033 | 1.001117e-49 | -8.615850e-47 |
| Msa0076990 | Msa0183770 | -0.808271 | 3.361360e-50 | -8.615850e-47 |
| Msa0077990 | Msa0183770 | -0.801673 | 8.057304e-49 | -8.615850e-47 |
| Msa0078160 | Msa0183770 | -0.816073 | 6.672500e-52 | -8.615850e-47 |
| Msa0078170 | Msa0183770 | -0.804431 | 2.167251e-49 | -8.615850e-47 |
| Msa0080100 | Msa0183770 | -0.826884 | 2.122915e-54 | -8.615850e-47 |
| Msa0090650 | Msa0183770 | 0.909845 | 3.627050e-82 | -8.615850e-47 |
| Msa0102290 | Msa0183770 | -0.805559 | 1.258821e-49 | -8.615850e-47 |
| Msa0117650 | Msa0183770 | 0.815423 | 9.317747e-52 | -8.615850e-47 |
| Msa0118700 | Msa0183770 | -0.804524 | 2.072447e-49 | -8.615850e-47 |
| Msa0122930 | Msa0183770 | -0.803418 | 3.519531e-49 | -8.615850e-47 |
| Msa0124070 | Msa0183770 | -0.816958 | 4.227313e-52 | -8.615850e-47 |
| Msa0124460 | Msa0183770 | -0.814049 | 1.877421e-51 | -8.615850e-47 |
| Msa0127110 | Msa0183770 | -0.808576 | 2.893392e-50 | -8.615850e-47 |
| Msa0127740 | Msa0183770 | 0.892516 | 1.476713e-74 | -8.615850e-47 |
| Msa0131230 | Msa0183770 | -0.809785 | 1.593625e-50 | -8.615850e-47 |
| Msa0132920 | Msa0183770 | -0.801287 | 9.668826e-49 | -8.615850e-47 |
| Msa0147070 | Msa0183770 | -0.802699 | 4.955378e-49 | -8.615850e-47 |
| Msa0156260 | Msa0183770 | -0.802055 | 6.728071e-49 | -8.615850e-47 |
| Msa0160120 | Msa0183770 | -0.801814 | 7.537547e-49 | -8.615850e-47 |
| Msa0160470 | Msa0183770 | -0.809423 | 1.906236e-50 | -8.615850e-47 |
| Msa0168470 | Msa0183770 | -0.827886 | 1.221122e-54 | -8.615850e-47 |
| Msa0168950 | Msa0183770 | -0.802445 | 5.590860e-49 | -8.615850e-47 |
| Msa0170550 | Msa0183770 | -0.812258 | 4.640925e-51 | -8.615850e-47 |
| Msa0172660 | Msa0183770 | -0.828154 | 1.052352e-54 | -8.615850e-47 |
| Msa0183770 | Msa0185540 | -0.811596 | 6.469606e-51 | -8.615850e-47 |
| Msa0183770 | Msa0188670 | -0.804895 | 1.734527e-49 | -8.615850e-47 |
| Msa0183770 | Msa0191180 | -0.821594 | 3.715499e-53 | -8.615850e-47 |
| Msa0183770 | Msa0191470 | 0.801327 | 9.486868e-49 | -8.615850e-47 |
| Msa0183770 | Msa0202630 | -0.809442 | 1.888720e-50 | -8.615850e-47 |
| Msa0183770 | Msa0211600 | -0.800481 | 1.412351e-48 | -8.615850e-47 |
| Msa0183770 | Msa0213590 | -0.810762 | 9.811155e-51 | -8.615850e-47 |
| Msa0183770 | Msa0233980 | 0.804975 | 1.669075e-49 | -8.615850e-47 |
| Msa0183770 | Msa0241720 | -0.801225 | 9.957278e-49 | -8.615850e-47 |
| Msa0183770 | Msa0245690 | -0.810632 | 1.046364e-50 | -8.615850e-47 |
| Msa0183770 | Msa0253320 | -0.836783 | 7.641015e-57 | -8.615850e-47 |
| Msa0183770 | Msa0270230 | -0.804511 | 2.085649e-49 | -8.615850e-47 |
| Msa0183770 | Msa0271700 | 0.804136 | 2.497089e-49 | -8.615850e-47 |
| Msa0183770 | Msa0271720 | 0.802033 | 6.797701e-49 | -8.615850e-47 |
| Msa0183770 | Msa0272410 | 0.810084 | 1.374037e-50 | -8.615850e-47 |
| Msa0183770 | Msa0274690 | -0.828344 | 9.472049e-55 | -8.615850e-47 |
| Msa0183770 | Msa0279800 | -0.811126 | 8.180906e-51 | -8.615850e-47 |
| Msa0183770 | Msa0297860 | -0.816304 | 5.923982e-52 | -8.615850e-47 |
| Msa0183770 | Msa0307630 | 0.804153 | 2.477036e-49 | -8.615850e-47 |
| Msa0183770 | Msa0307820 | -0.818281 | 2.126942e-52 | -8.615850e-47 |
| Msa0183770 | Msa0311910 | -0.838057 | 3.605724e-57 | -8.615850e-47 |
| Msa0183770 | Msa0322480 | -0.820773 | 5.744868e-53 | -8.615850e-47 |
| Msa0183770 | Msa0335050 | 0.800281 | 1.551124e-48 | -8.615850e-47 |
| Msa0183770 | Msa0367600 | -0.876820 | 1.029828e-68 | -8.615850e-47 |
| Msa0183770 | Msa0369430 | -0.847022 | 1.503716e-59 | -8.615850e-47 |
| Msa0183770 | Msa0370360 | 0.810904 | 9.142346e-51 | -8.615850e-47 |
| Msa0183770 | Msa0386230 | -0.811073 | 8.401658e-51 | -8.615850e-47 |
| Msa0183770 | Msa0390200 | 0.803254 | 3.806471e-49 | -8.615850e-47 |
| Msa0183770 | Msa0415210 | -0.849906 | 2.393834e-60 | -8.615850e-47 |
| Msa0183770 | Msa0416430 | -0.806852 | 6.726801e-50 | -8.615850e-47 |
| Msa0183770 | Msa0430040 | -0.812857 | 3.432975e-51 | -8.615850e-47 |
| Msa0183770 | Msa0433270 | -0.810841 | 9.431347e-51 | -8.615850e-47 |
| Msa0183770 | Msa0433890 | -0.808080 | 3.691165e-50 | -8.615850e-47 |
| Msa0183770 | Msa0434460 | 0.800404 | 1.464348e-48 | -8.615850e-47 |
| Msa0183770 | Msa0439940 | -0.814762 | 1.306345e-51 | -8.615850e-47 |
| Msa0183770 | Msa0440720 | -0.828949 | 6.763845e-55 | -8.615850e-47 |
| Msa0183770 | Msa0446110 | -0.808291 | 3.329359e-50 | -8.615850e-47 |
| Msa0183770 | Msa0469770 | -0.803539 | 3.321582e-49 | -8.615850e-47 |
| Msa0183770 | Msa0469840 | -0.802150 | 6.431803e-49 | -8.615850e-47 |
| Msa0183770 | Msa0474640 | -0.807449 | 5.026897e-50 | -8.615850e-47 |
| Msa0183770 | Msa0476140 | -0.810109 | 1.357558e-50 | -8.615850e-47 |
| Msa0183770 | Msa0479890 | -0.804152 | 2.477457e-49 | -8.615850e-47 |
| Msa0183770 | Msa0484590 | -0.804162 | 2.466311e-49 | -8.615850e-47 |
| Msa0183770 | Msa0504310 | -0.806612 | 7.559448e-50 | -8.615850e-47 |
| Msa0183770 | Msa0504360 | -0.800605 | 1.332560e-48 | -8.615850e-47 |
| Msa0183770 | Msa0504740 | -0.811186 | 7.940415e-51 | -8.615850e-47 |
| Msa0183770 | Msa0506700 | -0.800253 | 1.571859e-48 | -8.615850e-47 |
| Msa0183770 | Msa0508620 | -0.801860 | 7.376967e-49 | -8.615850e-47 |
| Msa0183770 | Msa0514630 | -0.824621 | 7.309803e-54 | -8.615850e-47 |
| Msa0183770 | Msa0519090 | -0.821894 | 3.166822e-53 | -8.615850e-47 |
| Msa0183770 | Msa0523600 | -0.802629 | 5.123647e-49 | -8.615850e-47 |
| Msa0183770 | Msa0524730 | -0.803148 | 4.003351e-49 | -8.615850e-47 |
| Msa0183770 | Msa0525180 | -0.804514 | 2.082473e-49 | -8.615850e-47 |
| Msa0183770 | Msa0574230 | -0.806478 | 8.068913e-50 | -8.615850e-47 |
| Msa0183770 | Msa0580360 | -0.803209 | 3.887346e-49 | -8.615850e-47 |
| Msa0183770 | Msa0608250 | -0.821071 | 4.905967e-53 | -8.615850e-47 |
| Msa0183770 | Msa0608280 | -0.809441 | 1.888899e-50 | -8.615850e-47 |
| Msa0183770 | Msa0617120 | -0.802593 | 5.212251e-49 | -8.615850e-47 |
| Msa0183770 | Msa0619450 | -0.800720 | 1.262786e-48 | -8.615850e-47 |
| Msa0183770 | Msa0619530 | -0.801597 | 8.354034e-49 | -8.615850e-47 |
| Msa0183770 | Msa0639040 | -0.808186 | 3.504543e-50 | -8.615850e-47 |
| Msa0183770 | Msa0644220 | -0.806993 | 6.280271e-50 | -8.615850e-47 |
| Msa0183770 | Msa0659580 | -0.802077 | 6.656285e-49 | -8.615850e-47 |
| Msa0183770 | Msa0661330 | 0.820419 | 6.927010e-53 | -8.615850e-47 |
| Msa0183770 | Msa0681100 | -0.826853 | 2.160034e-54 | -8.615850e-47 |
| Msa0183770 | Msa0684030 | -0.805823 | 1.107989e-49 | -8.615850e-47 |
| Msa0183770 | Msa0691320 | -0.823900 | 1.079822e-53 | -8.615850e-47 |
| Msa0183770 | Msa0708360 | -0.806204 | 9.212831e-50 | -8.615850e-47 |
| Msa0183770 | Msa0711860 | -0.802911 | 4.481033e-49 | -8.615850e-47 |
| Msa0183770 | Msa0719330 | -0.801938 | 7.108626e-49 | -8.615850e-47 |
| Msa0183770 | Msa0720000 | -0.804784 | 1.829775e-49 | -8.615850e-47 |
| Msa0183770 | Msa0738680 | 0.806816 | 6.846261e-50 | -8.615850e-47 |
| Msa0183770 | Msa0745010 | -0.801599 | 8.345874e-49 | -8.615850e-47 |
| Msa0183770 | Msa0745270 | -0.826006 | 3.437902e-54 | -8.615850e-47 |
| Msa0183770 | Msa0748470 | -0.804921 | 1.712380e-49 | -8.615850e-47 |
| Msa0183770 | Msa0750200 | -0.803436 | 3.489013e-49 | -8.615850e-47 |
| Msa0183770 | Msa0754790 | -0.819522 | 1.111143e-52 | -8.615850e-47 |
| Msa0183770 | Msa0754840 | -0.803912 | 2.779920e-49 | -8.615850e-47 |
| Msa0183770 | Msa0786600 | -0.822607 | 2.163472e-53 | -8.615850e-47 |
| Msa0183770 | Msa0790380 | -0.806718 | 7.178242e-50 | -8.615850e-47 |
| Msa0183770 | Msa0792410 | 0.806907 | 6.549724e-50 | -8.615850e-47 |
| Msa0183770 | Msa0799150 | -0.813035 | 3.138309e-51 | -8.615850e-47 |
| Msa0183770 | Msa0807840 | -0.803142 | 4.014155e-49 | -8.615850e-47 |
| Msa0183770 | Msa0822680 | -0.839398 | 1.622649e-57 | -8.615850e-47 |
| Msa0183770 | Msa0825960 | -0.821577 | 3.749826e-53 | -8.615850e-47 |
| Msa0183770 | Msa0833360 | -0.801584 | 8.406320e-49 | -8.615850e-47 |
| Msa0183770 | Msa0841350 | -0.802912 | 4.479045e-49 | -8.615850e-47 |
| Msa0183770 | Msa0866510 | -0.805086 | 1.581794e-49 | -8.615850e-47 |
| Msa0183770 | Msa0868500 | -0.806080 | 9.786807e-50 | -8.615850e-47 |
| Msa0183770 | Msa0873070 | -0.807977 | 3.883076e-50 | -8.615850e-47 |
| Msa0183770 | Msa0880200 | -0.807053 | 6.099103e-50 | -8.615850e-47 |
| Msa0183770 | Msa0899080 | -0.804809 | 1.807317e-49 | -8.615850e-47 |
| Msa0183770 | Msa0928060 | -0.801939 | 7.105241e-49 | -8.615850e-47 |
| Msa0183770 | Msa0930150 | -0.810956 | 8.904227e-51 | -8.615850e-47 |
| Msa0183770 | Msa0940550 | -0.824007 | 1.019162e-53 | -8.615850e-47 |
| Msa0183770 | Msa0945560 | -0.823209 | 1.566699e-53 | -8.615850e-47 |
| Msa0183770 | Msa0959970 | -0.807972 | 3.892328e-50 | -8.615850e-47 |
| Msa0183770 | Msa0968970 | -0.850735 | 1.401027e-60 | -8.615850e-47 |
| Msa0183770 | Msa0977090 | -0.824577 | 7.486643e-54 | -8.615850e-47 |
| Msa0183770 | Msa0985570 | -0.802697 | 4.961528e-49 | -8.615850e-47 |
| Msa0183770 | Msa0995130 | -0.807391 | 5.171385e-50 | -8.615850e-47 |
| Msa0183770 | Msa1007980 | -0.813992 | 1.933119e-51 | -8.615850e-47 |
| Msa0183770 | Msa1013560 | -0.818359 | 2.042084e-52 | -8.615850e-47 |
| Msa0183770 | Msa1019370 | -0.804824 | 1.794721e-49 | -8.615850e-47 |
| Msa0183770 | Msa1035050 | 0.807547 | 4.792507e-50 | -8.615850e-47 |
| Msa0183770 | Msa1040330 | 0.816524 | 5.288908e-52 | -8.615850e-47 |
| Msa0183770 | Msa1058550 | -0.805638 | 1.212148e-49 | -8.615850e-47 |
| Msa0183770 | Msa1073140 | -0.805278 | 1.442363e-49 | -8.615850e-47 |
| Msa0183770 | Msa1078120 | -0.806067 | 9.845894e-50 | -8.615850e-47 |
| Msa0183770 | Msa1084360 | 0.808787 | 2.608319e-50 | -8.615850e-47 |
| Msa0183770 | Msa1123260 | -0.802361 | 5.819815e-49 | -8.615850e-47 |
| Msa0183770 | Msa1129860 | 0.806010 | 1.012389e-49 | -8.615850e-47 |
| Msa0183770 | Msa1131300 | -0.800075 | 1.708179e-48 | -8.615850e-47 |
| Msa0183770 | Msa1137240 | -0.825109 | 5.608232e-54 | -8.615850e-47 |
| Msa0183770 | Msa1137750 | 0.802494 | 5.461701e-49 | -8.615850e-47 |
| Msa0183770 | Msa1156100 | -0.804395 | 2.204909e-49 | -8.615850e-47 |
| Msa0183770 | Msa1161550 | -0.805618 | 1.223618e-49 | -8.615850e-47 |
| Msa0183770 | Msa1190320 | -0.818214 | 2.202500e-52 | -8.615850e-47 |
| Msa0183770 | Msa1197740 | -0.801994 | 6.923415e-49 | -8.615850e-47 |
| Msa0183770 | Msa1203320 | -0.812927 | 3.312978e-51 | -8.615850e-47 |
| Msa0183770 | Msa1215540 | -0.834416 | 3.035043e-56 | -8.615850e-47 |
| Msa0183770 | Msa1223540 | 0.808070 | 3.709294e-50 | -8.615850e-47 |
| Msa0183770 | Msa1223620 | 0.815441 | 9.229079e-52 | -8.615850e-47 |
| Msa0183770 | Msa1239190 | 0.803809 | 2.919857e-49 | -8.615850e-47 |
| Msa0183770 | Msa1244940 | -0.806488 | 8.026579e-50 | -8.615850e-47 |
| Msa0183770 | Msa1250490 | -0.807553 | 4.777635e-50 | -8.615850e-47 |
| Msa0183770 | Msa1257860 | -0.800217 | 1.598518e-48 | -8.615850e-47 |
| Msa0183770 | Msa1263520 | 0.805019 | 1.633808e-49 | -8.615850e-47 |
| Msa0183770 | Msa1269730 | -0.818793 | 1.628037e-52 | -8.615850e-47 |
| Msa0183770 | Msa1297490 | -0.803784 | 2.955239e-49 | -8.615850e-47 |
| Msa0183770 | Msa1297550 | -0.820083 | 8.271943e-53 | -8.615850e-47 |
| Msa0183770 | Msa1310300 | -0.804662 | 1.939597e-49 | -8.615850e-47 |
| Msa0183770 | Msa1325260 | -0.801162 | 1.025678e-48 | -8.615850e-47 |
| Msa0183770 | Msa1325270 | -0.819775 | 9.728637e-53 | -8.615850e-47 |
| Msa0183770 | Msa1334690 | -0.817822 | 2.701960e-52 | -8.615850e-47 |
| Msa0183770 | Msa1338810 | -0.832605 | 8.592353e-56 | -8.615850e-47 |
| Msa0183770 | Msa1353040 | -0.805301 | 1.426244e-49 | -8.615850e-47 |
| Msa0183770 | Msa1369390 | -0.800845 | 1.190438e-48 | -8.615850e-47 |
| Msa0183770 | Msa1375120 | -0.804796 | 1.818963e-49 | -8.615850e-47 |
| Msa0183770 | Msa1375650 | -0.805951 | 1.041830e-49 | -8.615850e-47 |
| Msa0183770 | Msa1376510 | -0.810200 | 1.297498e-50 | -8.615850e-47 |
| Msa0183770 | Msa1381060 | -0.802095 | 6.599830e-49 | -8.615850e-47 |
| Msa0183770 | Msa1386010 | 0.806915 | 6.521708e-50 | -8.615850e-47 |
| Msa0183770 | Msa1386820 | -0.813725 | 2.213591e-51 | -8.615850e-47 |
| Msa0183770 | Msa1403590 | -0.803290 | 3.740819e-49 | -8.615850e-47 |
| Msa0183770 | Msa1404810 | -0.822382 | 2.440568e-53 | -8.615850e-47 |
| Msa0183770 | Msa1405040 | -0.834179 | 3.481627e-56 | -8.615850e-47 |
| Msa0183770 | Msa1412750 | -0.800543 | 1.371793e-48 | -8.615850e-47 |
| Msa0183770 | Msa1419930 | -0.800730 | 1.256821e-48 | -8.615850e-47 |
| Msa0183770 | Msa1423270 | -0.802484 | 5.489760e-49 | -8.615850e-47 |
| Msa0183770 | Msa1439000 | -0.808327 | 3.271296e-50 | -8.615850e-47 |
| Msa0183770 | Msa1439400 | -0.820717 | 5.919664e-53 | -8.615850e-47 |
| Msa0183770 | Msa1443280 | -0.811298 | 7.509510e-51 | -8.615850e-47 |
| Msa0183770 | Msa1448410 | -0.810082 | 1.375325e-50 | -8.615850e-47 |
| Msa0183770 | Msa1460340 | -0.814318 | 1.637600e-51 | -8.615850e-47 |
| Msa0183770 | Msa1462610 | 0.807265 | 5.499227e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183770 | MtrunA17_Chr1g0210681 | 98.765 | 243 | 3 | 0 | 1 | 243 | 1 | 243 | 2.36e-178 | 489 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGTCTTTGTTTGTTATC+TGG | 0.223276 | 1_4:-72769289 | None:intergenic |
| ATTTCCCCGATCTCGATTTC+TGG | 0.228924 | 1_4:+72769309 | Msa0183770:five_prime_UTR |
| GGTATGCGAAGATTAGTAAT+AGG | 0.261485 | 1_4:-72769450 | None:intergenic |
| ATCGATCTTCCCTTACTTCT+CGG | 0.290746 | 1_4:+72769562 | Msa0183770:CDS |
| ATATTGAATTGGCTGTTAAA+TGG | 0.303433 | 1_4:+72769878 | Msa0183770:CDS |
| TTAATCTTGAACCTATTATC+TGG | 0.318588 | 1_4:+72772136 | Msa0183770:three_prime_UTR |
| CTTATAGATGTGTTCCTACT+TGG | 0.325100 | 1_4:+72769830 | Msa0183770:CDS |
| GCAATCTGTAACCAGATAAT+AGG | 0.326793 | 1_4:-72772147 | None:intergenic |
| TAGTCAATGAATCACTTCTT+TGG | 0.328386 | 1_4:-72771993 | None:intergenic |
| TTACTGCCATATAACTTTGC+AGG | 0.331845 | 1_4:-72772422 | None:intergenic |
| TTAAATGGGCGCTTCGTAAG+AGG | 0.341862 | 1_4:+72769893 | Msa0183770:CDS |
| ATGAATCACTTCTTTGGCTT+CGG | 0.351012 | 1_4:-72771987 | None:intergenic |
| TGTCTGGAAAACCATCAAAC+TGG | 0.367415 | 1_4:-72772038 | None:intergenic |
| GAGATGCCTGCAAAGTTATA+TGG | 0.378395 | 1_4:+72772416 | Msa0183770:three_prime_UTR |
| CCATCATGAACCTTACTATA+AGG | 0.393189 | 1_4:-72769694 | None:intergenic |
| TGGTGGTTGGCCTTCTTCGC+CGG | 0.404259 | 1_4:+72769726 | Msa0183770:CDS |
| GTATGCGAAGATTAGTAATA+GGG | 0.406202 | 1_4:-72769449 | None:intergenic |
| CATGATTGGAGAAGGAGTTT+AGG | 0.407908 | 1_4:-72769386 | None:intergenic |
| CTAAACTCCTTCTCCAATCA+TGG | 0.409496 | 1_4:+72769387 | Msa0183770:exon |
| TCAACCTGGTGATATTGAAT+TGG | 0.421228 | 1_4:+72769867 | Msa0183770:CDS |
| AAGATAATGAGTGAAACAAT+TGG | 0.423033 | 1_4:-72769607 | None:intergenic |
| CAAGTAGGAACACATCTATA+AGG | 0.427274 | 1_4:-72769829 | None:intergenic |
| AGAAATCGAGATCGGGGAAA+TGG | 0.441800 | 1_4:-72769307 | None:intergenic |
| CACTAGGTGTCACAGATGAT+TGG | 0.449809 | 1_4:+72771862 | Msa0183770:CDS |
| ATGCTCATATTATGAAAAGT+TGG | 0.462906 | 1_4:+72772237 | Msa0183770:three_prime_UTR |
| AAGAACCAGAAATCGAGATC+GGG | 0.463765 | 1_4:-72769314 | None:intergenic |
| TATTGAATTGGCTGTTAAAT+GGG | 0.466528 | 1_4:+72769879 | Msa0183770:CDS |
| TCTGGTTCTTCTTCTTCCTA+CGG | 0.468824 | 1_4:+72769327 | Msa0183770:five_prime_UTR |
| GATATGCCTACACCCATGAT+TGG | 0.469391 | 1_4:-72769400 | None:intergenic |
| TCAATAATAGCAGGATCACC+CGG | 0.471488 | 1_4:-72769760 | None:intergenic |
| ATGAGACTAAGGATGAATAG+AGG | 0.490069 | 1_4:-72769510 | None:intergenic |
| CGGTGAACCACCTTATAGTA+AGG | 0.492096 | 1_4:+72769684 | Msa0183770:CDS |
| TAACTTGCAATCATTATCCA+TGG | 0.494656 | 1_4:-72772293 | None:intergenic |
| TTATAGATGTGTTCCTACTT+GGG | 0.497653 | 1_4:+72769831 | Msa0183770:CDS |
| GAGAGCATTCATGCGAATGT+AGG | 0.504524 | 1_4:-72771919 | None:intergenic |
| AGATAATGAGTGAAACAATT+GGG | 0.508906 | 1_4:-72769606 | None:intergenic |
| ATCGCAAGGCACTTGAAGAA+TGG | 0.514773 | 1_4:+72771943 | Msa0183770:CDS |
| TGGATAGAATTAAGAAGCCT+AGG | 0.521479 | 1_4:-72769480 | None:intergenic |
| GAAGAACCAGAAATCGAGAT+CGG | 0.525993 | 1_4:-72769315 | None:intergenic |
| TGAGACGAGGAATGAGACTA+AGG | 0.528904 | 1_4:-72769521 | None:intergenic |
| AGTAAGGGAAGATCGATGGA+AGG | 0.531826 | 1_4:-72769556 | None:intergenic |
| TTCGCCGGAAAAGATGCCCC+CGG | 0.532390 | 1_4:+72769741 | Msa0183770:CDS |
| GATTGGAGAAGGAGTTTAGG+AGG | 0.533071 | 1_4:-72769383 | None:intergenic |
| CAAGTACAATCAATAATAGC+AGG | 0.535238 | 1_4:-72769769 | None:intergenic |
| ATTCTTCAAGTGCCTTGCGA+TGG | 0.543540 | 1_4:-72771941 | None:intergenic |
| ATTCGAACGAAGTAAAGATA+AGG | 0.546264 | 1_4:-72769634 | None:intergenic |
| AGAGCATTCATGCGAATGTA+GGG | 0.548827 | 1_4:-72771918 | None:intergenic |
| CATGATGGACTTTACGTTGG+TGG | 0.548990 | 1_4:+72769709 | Msa0183770:CDS |
| GGATGAATAGAGGAATGGAA+TGG | 0.558145 | 1_4:-72769500 | None:intergenic |
| GTAAGGGAAGATCGATGGAA+GGG | 0.569098 | 1_4:-72769555 | None:intergenic |
| TGTTATCTGGTTGACGCACG+CGG | 0.570109 | 1_4:-72769276 | None:intergenic |
| TAAACTCCTTCTCCAATCAT+GGG | 0.571717 | 1_4:+72769388 | Msa0183770:exon |
| TAAATGGGCGCTTCGTAAGA+GGG | 0.572086 | 1_4:+72769894 | Msa0183770:CDS |
| CCTTATAGTAAGGTTCATGA+TGG | 0.572606 | 1_4:+72769694 | Msa0183770:CDS |
| GTCTGGAAAACCATCAAACT+GGG | 0.576734 | 1_4:-72772037 | None:intergenic |
| AATTGGGAATGTTCCGTCGG+AGG | 0.578873 | 1_4:-72769590 | None:intergenic |
| CAATAATAGCAGGATCACCC+GGG | 0.581474 | 1_4:-72769759 | None:intergenic |
| CCGAGGTTGAAAAGTTTGAG+TGG | 0.583549 | 1_4:+72769799 | Msa0183770:CDS |
| ATGGACTTTACGTTGGTGGT+TGG | 0.584648 | 1_4:+72769713 | Msa0183770:CDS |
| CCTTCTCCAATCATGGGTGT+AGG | 0.585770 | 1_4:+72769394 | Msa0183770:exon |
| ACTAAGGATGAATAGAGGAA+TGG | 0.589227 | 1_4:-72769505 | None:intergenic |
| AATTCAATATCACCAGGTTG+AGG | 0.590249 | 1_4:-72769865 | None:intergenic |
| ATTGCATCGTGTAATGCCCA+TGG | 0.591116 | 1_4:+72772276 | Msa0183770:three_prime_UTR |
| GAGAAGTAAGGGAAGATCGA+TGG | 0.593587 | 1_4:-72769560 | None:intergenic |
| CCTACACCCATGATTGGAGA+AGG | 0.593774 | 1_4:-72769394 | None:intergenic |
| ATTGTACTTGTGAGTTTCCG+AGG | 0.596378 | 1_4:+72769782 | Msa0183770:CDS |
| ACAGCCAATTCAATATCACC+AGG | 0.601105 | 1_4:-72769871 | None:intergenic |
| CATGAATGCTCTCCATCGCA+AGG | 0.603132 | 1_4:+72771929 | Msa0183770:CDS |
| AACTTGCAATCATTATCCAT+GGG | 0.603454 | 1_4:-72772292 | None:intergenic |
| CAAGAATGCTAATAAAGTAG+AGG | 0.605988 | 1_4:-72772105 | None:intergenic |
| AGGTTGAAAAGTTTGAGTGG+TGG | 0.609401 | 1_4:+72769802 | Msa0183770:CDS |
| AACAATTGGGAATGTTCCGT+CGG | 0.616528 | 1_4:-72769593 | None:intergenic |
| ATGGGCATTACACGATGCAA+TGG | 0.619638 | 1_4:-72772274 | None:intergenic |
| TGAGATTGTTTATGACACAA+TGG | 0.622404 | 1_4:+72772392 | Msa0183770:three_prime_UTR |
| GTTCATGATGGACTTTACGT+TGG | 0.636648 | 1_4:+72769706 | Msa0183770:CDS |
| GGAGATCTAGTATCCCAAGT+AGG | 0.645762 | 1_4:-72769844 | None:intergenic |
| AGAACCAGAAATCGAGATCG+GGG | 0.646478 | 1_4:-72769313 | None:intergenic |
| GATGTGTTGAAGTTGAACAA+TGG | 0.646551 | 1_4:+72772213 | Msa0183770:three_prime_UTR |
| TCATGAACCTTACTATAAGG+TGG | 0.649373 | 1_4:-72769691 | None:intergenic |
| GCTAATAAAGTAGAGGCACA+AGG | 0.650620 | 1_4:-72772098 | None:intergenic |
| CGATGCAATGGTCTCAACTG+TGG | 0.653190 | 1_4:-72772262 | None:intergenic |
| GATACTAGATCTCCTCAACC+TGG | 0.658121 | 1_4:+72769853 | Msa0183770:CDS |
| GGAGTTGTATGTAATTGTTG+TGG | 0.658660 | 1_4:+72772513 | Msa0183770:three_prime_UTR |
| CTTCTCGGCAAAACCTCCGA+CGG | 0.659592 | 1_4:+72769577 | Msa0183770:CDS |
| TGTGCACTGTTAGTTGCACT+AGG | 0.661928 | 1_4:+72771846 | Msa0183770:CDS |
| GAAACTGCAACATCAACCGT+AGG | 0.667737 | 1_4:-72769343 | None:intergenic |
| GGTGTGATGCGATTGAGACG+AGG | 0.672751 | 1_4:-72769534 | None:intergenic |
| AATAATAGCAGGATCACCCG+GGG | 0.690073 | 1_4:-72769758 | None:intergenic |
| ATAATAGCAGGATCACCCGG+GGG | 0.807868 | 1_4:-72769757 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTGATTATTTTTACTC+TGG | - | chr1_4:72770297-72770316 | None:intergenic | 15.0% |
| !! | ATCTTAGTTGAAAAATAAAT+TGG | + | chr1_4:72772492-72772511 | Msa0183770:three_prime_UTR | 15.0% |
| !! | TACTACAATATTTCATTTCA+TGG | - | chr1_4:72769993-72770012 | None:intergenic | 20.0% |
| !!! | ATTTCATTTTATGAGAGTAA+TGG | + | chr1_4:72770621-72770640 | Msa0183770:intron | 20.0% |
| !!! | TTTTCTATGTTGTTTGATAA+AGG | + | chr1_4:72770712-72770731 | Msa0183770:intron | 20.0% |
| !!! | TTTCTATGTTGTTTGATAAA+GGG | + | chr1_4:72770713-72770732 | Msa0183770:intron | 20.0% |
| !!! | TATTACAATTTTGCTAGTTT+TGG | + | chr1_4:72770906-72770925 | Msa0183770:intron | 20.0% |
| !! | ATGAATGAAAATGAGTAAAA+AGG | - | chr1_4:72771218-72771237 | None:intergenic | 20.0% |
| !! | CATTTATTAAACAATGTATG+TGG | + | chr1_4:72771304-72771323 | Msa0183770:intron | 20.0% |
| !! | AAAACAAAACAAAATGATGT+TGG | - | chr1_4:72771783-72771802 | None:intergenic | 20.0% |
| !!! | TATATGGCAGTAAATTTTAT+TGG | + | chr1_4:72772432-72772451 | Msa0183770:three_prime_UTR | 20.0% |
| !!! | TATTTTTCAACTAAGATCTT+TGG | - | chr1_4:72772489-72772508 | None:intergenic | 20.0% |
| ! | AGATAATGAGTGAAACAATT+GGG | - | chr1_4:72769609-72769628 | None:intergenic | 25.0% |
| ! | AAGATAATGAGTGAAACAAT+TGG | - | chr1_4:72769610-72769629 | None:intergenic | 25.0% |
| ! | ATATTGAATTGGCTGTTAAA+TGG | + | chr1_4:72769878-72769897 | Msa0183770:CDS | 25.0% |
| ! | TATTGAATTGGCTGTTAAAT+GGG | + | chr1_4:72769879-72769898 | Msa0183770:CDS | 25.0% |
| ! | TAAGCACAATGAACAAAAAT+GGG | - | chr1_4:72769931-72769950 | None:intergenic | 25.0% |
| ! | ATAAGCACAATGAACAAAAA+TGG | - | chr1_4:72769932-72769951 | None:intergenic | 25.0% |
| !! | ATTTTTGTTCATTGTGCTTA+TGG | + | chr1_4:72769931-72769950 | Msa0183770:CDS | 25.0% |
| !!! | TATTTTTACTCTGGTGTATA+TGG | - | chr1_4:72770288-72770307 | None:intergenic | 25.0% |
| !! | GTTCAAAACAACTTTAGAAA+AGG | - | chr1_4:72770391-72770410 | None:intergenic | 25.0% |
| !!! | CTTTGGATTAGTGTATATAT+TGG | - | chr1_4:72770488-72770507 | None:intergenic | 25.0% |
| ! | AACAACATAGAAAACTGTAA+GGG | - | chr1_4:72770706-72770725 | None:intergenic | 25.0% |
| ! | AAACAACATAGAAAACTGTA+AGG | - | chr1_4:72770707-72770726 | None:intergenic | 25.0% |
| ! | AGTAAAATTCTTTCTTCCAA+TGG | - | chr1_4:72770887-72770906 | None:intergenic | 25.0% |
| ! | TGTATGATATGAATAGACTA+GGG | - | chr1_4:72771242-72771261 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr1_4:72771269-72771288 | None:intergenic | 25.0% |
| ! | CATTCAATTAACGATGTATA+TGG | - | chr1_4:72771343-72771362 | None:intergenic | 25.0% |
| !! | CTTTTGCTTATAATAGTGAT+CGG | + | chr1_4:72771378-72771397 | Msa0183770:intron | 25.0% |
| ! | TTGTATGTTTAATTCATCTC+TGG | - | chr1_4:72771551-72771570 | None:intergenic | 25.0% |
| ! | AGTGATACTATTATATTCCT+AGG | + | chr1_4:72771574-72771593 | Msa0183770:intron | 25.0% |
| ! | TAATATAGTGAAACTCTCAT+TGG | + | chr1_4:72771654-72771673 | Msa0183770:intron | 25.0% |
| !! | TGTAACTTGTAAGTTAAATG+TGG | - | chr1_4:72771690-72771709 | None:intergenic | 25.0% |
| ! | TGGTTATATCACATTCTTAT+AGG | - | chr1_4:72771763-72771782 | None:intergenic | 25.0% |
| ! | AAAAGCTGATAAAGCAAAAA+CGG | + | chr1_4:72771895-72771914 | Msa0183770:CDS | 25.0% |
| ! | TTAATCTTGAACCTATTATC+TGG | + | chr1_4:72772136-72772155 | Msa0183770:three_prime_UTR | 25.0% |
| ! | ATGCTCATATTATGAAAAGT+TGG | + | chr1_4:72772237-72772256 | Msa0183770:three_prime_UTR | 25.0% |
| !!! | ATTCTGAAGTTTTGATGTAA+TGG | + | chr1_4:72772538-72772557 | Msa0183770:three_prime_UTR | 25.0% |
| !! | AATGGTCTTTGTTTGTTATC+TGG | - | chr1_4:72769292-72769311 | None:intergenic | 30.0% |
| GTATGCGAAGATTAGTAATA+GGG | - | chr1_4:72769452-72769471 | None:intergenic | 30.0% | |
| !!! | TTAAGAAGCCTAGGTTTTTT+AGG | - | chr1_4:72769474-72769493 | None:intergenic | 30.0% |
| ATTCGAACGAAGTAAAGATA+AGG | - | chr1_4:72769637-72769656 | None:intergenic | 30.0% | |
| CAAGTACAATCAATAATAGC+AGG | - | chr1_4:72769772-72769791 | None:intergenic | 30.0% | |
| TTATAGATGTGTTCCTACTT+GGG | + | chr1_4:72769831-72769850 | Msa0183770:CDS | 30.0% | |
| TTGTTAGTATGAATGGAACT+AGG | + | chr1_4:72770113-72770132 | Msa0183770:intron | 30.0% | |
| TGTTAACCAAAAGAAACCTA+GGG | - | chr1_4:72770264-72770283 | None:intergenic | 30.0% | |
| ATGTTAACCAAAAGAAACCT+AGG | - | chr1_4:72770265-72770284 | None:intergenic | 30.0% | |
| ! | TGTAGGTTGAAAATGTTACA+AGG | - | chr1_4:72770322-72770341 | None:intergenic | 30.0% |
| CCATGCTATCATATAATTGT+AGG | - | chr1_4:72770339-72770358 | None:intergenic | 30.0% | |
| CCTACAATTATATGATAGCA+TGG | + | chr1_4:72770336-72770355 | Msa0183770:intron | 30.0% | |
| !! | CTTTAGAAAAGGCATTTGTT+TGG | - | chr1_4:72770380-72770399 | None:intergenic | 30.0% |
| TTCTAAATTTGTGCTTGTCA+AGG | + | chr1_4:72770412-72770431 | Msa0183770:intron | 30.0% | |
| CCAATTTAGATAGGAGAATT+TGG | - | chr1_4:72770512-72770531 | None:intergenic | 30.0% | |
| CCAAATTCTCCTATCTAAAT+TGG | + | chr1_4:72770509-72770528 | Msa0183770:intron | 30.0% | |
| GTCTCAATTCCAATTTAGAT+AGG | - | chr1_4:72770521-72770540 | None:intergenic | 30.0% | |
| CTTTCACATAAATCAGAATG+TGG | - | chr1_4:72770584-72770603 | None:intergenic | 30.0% | |
| ACAACATAGAAAACTGTAAG+GGG | - | chr1_4:72770705-72770724 | None:intergenic | 30.0% | |
| TAAACACTTAAGACATGTGA+GGG | - | chr1_4:72770812-72770831 | None:intergenic | 30.0% | |
| !! | ATTATCTGTTGTTTCCTTGA+AGG | - | chr1_4:72770856-72770875 | None:intergenic | 30.0% |
| CAGATAATTGAGATAACCAT+TGG | + | chr1_4:72770868-72770887 | Msa0183770:intron | 30.0% | |
| ! | ATCAACAACACTGTTTGTTT+TGG | + | chr1_4:72770947-72770966 | Msa0183770:intron | 30.0% |
| ACTTTCGTGTTCATTATCTT+CGG | + | chr1_4:72770980-72770999 | Msa0183770:intron | 30.0% | |
| ! | ATTGCATGTGTGTTATTCTA+AGG | - | chr1_4:72771117-72771136 | None:intergenic | 30.0% |
| ACACATGCAATGAAAAAACT+GGG | + | chr1_4:72771126-72771145 | Msa0183770:intron | 30.0% | |
| AAAAGCCCATATTGTCAATT+AGG | + | chr1_4:72771164-72771183 | Msa0183770:intron | 30.0% | |
| TCCTACCTAATTGACAATAT+GGG | - | chr1_4:72771172-72771191 | None:intergenic | 30.0% | |
| ATCCTACCTAATTGACAATA+TGG | - | chr1_4:72771173-72771192 | None:intergenic | 30.0% | |
| GTGTATGATATGAATAGACT+AGG | - | chr1_4:72771243-72771262 | None:intergenic | 30.0% | |
| TAAGTTAAATGTGGAGACAT+TGG | - | chr1_4:72771681-72771700 | None:intergenic | 30.0% | |
| TAGTCAATGAATCACTTCTT+TGG | - | chr1_4:72771996-72772015 | None:intergenic | 30.0% | |
| ! | GTTTTCCAGACAATACTTAA+TGG | + | chr1_4:72772049-72772068 | Msa0183770:three_prime_UTR | 30.0% |
| !! | TTTTGCCATTAAGTATTGTC+TGG | - | chr1_4:72772057-72772076 | None:intergenic | 30.0% |
| CAAGAATGCTAATAAAGTAG+AGG | - | chr1_4:72772108-72772127 | None:intergenic | 30.0% | |
| AACTTGCAATCATTATCCAT+GGG | - | chr1_4:72772295-72772314 | None:intergenic | 30.0% | |
| ! | TAACTTGCAATCATTATCCA+TGG | - | chr1_4:72772296-72772315 | None:intergenic | 30.0% |
| ! | CTCAAGTTTTTCTTTGCATA+AGG | + | chr1_4:72772351-72772370 | Msa0183770:three_prime_UTR | 30.0% |
| TGAGATTGTTTATGACACAA+TGG | + | chr1_4:72772392-72772411 | Msa0183770:three_prime_UTR | 30.0% | |
| TAAACTCCTTCTCCAATCAT+GGG | + | chr1_4:72769388-72769407 | Msa0183770:exon | 35.0% | |
| GGTATGCGAAGATTAGTAAT+AGG | - | chr1_4:72769453-72769472 | None:intergenic | 35.0% | |
| TTCGCATACCTAAAAAACCT+AGG | + | chr1_4:72769463-72769482 | Msa0183770:CDS | 35.0% | |
| TGGATAGAATTAAGAAGCCT+AGG | - | chr1_4:72769483-72769502 | None:intergenic | 35.0% | |
| ACTAAGGATGAATAGAGGAA+TGG | - | chr1_4:72769508-72769527 | None:intergenic | 35.0% | |
| ATGAGACTAAGGATGAATAG+AGG | - | chr1_4:72769513-72769532 | None:intergenic | 35.0% | |
| TCATGAACCTTACTATAAGG+TGG | - | chr1_4:72769694-72769713 | None:intergenic | 35.0% | |
| CCATCATGAACCTTACTATA+AGG | - | chr1_4:72769697-72769716 | None:intergenic | 35.0% | |
| CCTTATAGTAAGGTTCATGA+TGG | + | chr1_4:72769694-72769713 | Msa0183770:CDS | 35.0% | |
| CAAGTAGGAACACATCTATA+AGG | - | chr1_4:72769832-72769851 | None:intergenic | 35.0% | |
| CTTATAGATGTGTTCCTACT+TGG | + | chr1_4:72769830-72769849 | Msa0183770:CDS | 35.0% | |
| AATTCAATATCACCAGGTTG+AGG | - | chr1_4:72769868-72769887 | None:intergenic | 35.0% | |
| TCAACCTGGTGATATTGAAT+TGG | + | chr1_4:72769867-72769886 | Msa0183770:CDS | 35.0% | |
| ! | GTGGTTGTTGTTAGTATGAA+TGG | + | chr1_4:72770106-72770125 | Msa0183770:intron | 35.0% |
| ! | CTGTTGTTTGTAAACTCTGA+AGG | - | chr1_4:72770140-72770159 | None:intergenic | 35.0% |
| ! | CCACTAGTTTATTACCATCA+AGG | - | chr1_4:72770197-72770216 | None:intergenic | 35.0% |
| ! | CCTTGATGGTAATAAACTAG+TGG | + | chr1_4:72770194-72770213 | Msa0183770:intron | 35.0% |
| !!! | AGTGGTTATGTTAGTTTTCC+AGG | + | chr1_4:72770212-72770231 | Msa0183770:intron | 35.0% |
| !!! | AGGGAGTTTTAAGAAGTTCA+AGG | - | chr1_4:72770245-72770264 | None:intergenic | 35.0% |
| TGAACTTCTTAAAACTCCCT+AGG | + | chr1_4:72770245-72770264 | Msa0183770:intron | 35.0% | |
| ! | AAAACTCCCTAGGTTTCTTT+TGG | + | chr1_4:72770255-72770274 | Msa0183770:intron | 35.0% |
| TGCTTGTCAAGGAAAAACTT+TGG | + | chr1_4:72770423-72770442 | Msa0183770:intron | 35.0% | |
| AGATAGGAGAATTTGGACTT+TGG | - | chr1_4:72770505-72770524 | None:intergenic | 35.0% | |
| TCTAAATTGGAATTGAGACG+AGG | + | chr1_4:72770522-72770541 | Msa0183770:intron | 35.0% | |
| AGAATGTGGTCACAAACTAA+TGG | - | chr1_4:72770570-72770589 | None:intergenic | 35.0% | |
| TCTGCACATGAGATAATAGA+AGG | + | chr1_4:72770679-72770698 | Msa0183770:intron | 35.0% | |
| ! | ATGTTGTTTGATAAAGGGAG+CGG | + | chr1_4:72770718-72770737 | Msa0183770:intron | 35.0% |
| ! | GGTTCTTTTCTCTCTTTAGT+TGG | - | chr1_4:72770791-72770810 | None:intergenic | 35.0% |
| CTAAACACTTAAGACATGTG+AGG | - | chr1_4:72770813-72770832 | None:intergenic | 35.0% | |
| TTGATGCCAATAGTGTACAA+CGG | - | chr1_4:72770932-72770951 | None:intergenic | 35.0% | |
| CACACATGCAATGAAAAAAC+TGG | + | chr1_4:72771125-72771144 | Msa0183770:intron | 35.0% | |
| TATTCATATCATACACCCTC+CGG | + | chr1_4:72771247-72771266 | Msa0183770:intron | 35.0% | |
| TTGCTTATAATAGTGATCGG+AGG | + | chr1_4:72771381-72771400 | Msa0183770:intron | 35.0% | |
| GTTGACAGATGTATTTCTTG+CGG | - | chr1_4:72771458-72771477 | None:intergenic | 35.0% | |
| TAAGACAACAACGACAATCA+TGG | - | chr1_4:72771501-72771520 | None:intergenic | 35.0% | |
| TATAGGCAAGCATAATAGTC+TGG | - | chr1_4:72771746-72771765 | None:intergenic | 35.0% | |
| ! | GTTTTCCCTTTCTTGTGTAA+AGG | + | chr1_4:72771798-72771817 | Msa0183770:intron | 35.0% |
| CATGACCTTTACACAAGAAA+GGG | - | chr1_4:72771806-72771825 | None:intergenic | 35.0% | |
| ! | ATGAATCACTTCTTTGGCTT+CGG | - | chr1_4:72771990-72772009 | None:intergenic | 35.0% |
| ! | TTTTGTCAATCCCAGTTTGA+TGG | + | chr1_4:72772027-72772046 | Msa0183770:three_prime_UTR | 35.0% |
| GCAATCTGTAACCAGATAAT+AGG | - | chr1_4:72772150-72772169 | None:intergenic | 35.0% | |
| GATGTGTTGAAGTTGAACAA+TGG | + | chr1_4:72772213-72772232 | Msa0183770:three_prime_UTR | 35.0% | |
| TGCAAAGAAAAACTTGAGCT+TGG | - | chr1_4:72772349-72772368 | None:intergenic | 35.0% | |
| TTACTGCCATATAACTTTGC+AGG | - | chr1_4:72772425-72772444 | None:intergenic | 35.0% | |
| GGAGTTGTATGTAATTGTTG+TGG | + | chr1_4:72772513-72772532 | Msa0183770:three_prime_UTR | 35.0% | |
| !! | GTTTTGATGTAATGGTGTGA+TGG | + | chr1_4:72772546-72772565 | Msa0183770:three_prime_UTR | 35.0% |
| AAGAACCAGAAATCGAGATC+GGG | - | chr1_4:72769317-72769336 | None:intergenic | 40.0% | |
| GAAGAACCAGAAATCGAGAT+CGG | - | chr1_4:72769318-72769337 | None:intergenic | 40.0% | |
| !! | TCTGGTTCTTCTTCTTCCTA+CGG | + | chr1_4:72769327-72769346 | Msa0183770:five_prime_UTR | 40.0% |
| CATGATTGGAGAAGGAGTTT+AGG | - | chr1_4:72769389-72769408 | None:intergenic | 40.0% | |
| CTAAACTCCTTCTCCAATCA+TGG | + | chr1_4:72769387-72769406 | Msa0183770:exon | 40.0% | |
| GGATGAATAGAGGAATGGAA+TGG | - | chr1_4:72769503-72769522 | None:intergenic | 40.0% | |
| ATCGATCTTCCCTTACTTCT+CGG | + | chr1_4:72769562-72769581 | Msa0183770:CDS | 40.0% | |
| AACAATTGGGAATGTTCCGT+CGG | - | chr1_4:72769596-72769615 | None:intergenic | 40.0% | |
| !! | GTTCATGATGGACTTTACGT+TGG | + | chr1_4:72769706-72769725 | Msa0183770:CDS | 40.0% |
| TCAATAATAGCAGGATCACC+CGG | - | chr1_4:72769763-72769782 | None:intergenic | 40.0% | |
| ATTGTACTTGTGAGTTTCCG+AGG | + | chr1_4:72769782-72769801 | Msa0183770:CDS | 40.0% | |
| ! | CCACTCAAACTTTTCAACCT+CGG | - | chr1_4:72769802-72769821 | None:intergenic | 40.0% |
| AGGTTGAAAAGTTTGAGTGG+TGG | + | chr1_4:72769802-72769821 | Msa0183770:CDS | 40.0% | |
| ACAGCCAATTCAATATCACC+AGG | - | chr1_4:72769874-72769893 | None:intergenic | 40.0% | |
| GAAGTTCAAGGTTCAAATCC+TGG | - | chr1_4:72770233-72770252 | None:intergenic | 40.0% | |
| !! | GAAAAGGCATTTGTTTGGAC+AGG | - | chr1_4:72770375-72770394 | None:intergenic | 40.0% |
| ATAAAGGGAGCGGTGATAAA+GGG | + | chr1_4:72770728-72770747 | Msa0183770:intron | 40.0% | |
| GATAAAGGGAAATGTTGGAC+AGG | + | chr1_4:72770742-72770761 | Msa0183770:intron | 40.0% | |
| TTTGTACTGTGAGTCCTTCA+AGG | + | chr1_4:72770839-72770858 | Msa0183770:intron | 40.0% | |
| ! | TTTTGGCCGTTGTACACTAT+TGG | + | chr1_4:72770923-72770942 | Msa0183770:intron | 40.0% |
| GCCCATATTGTCAATTAGGT+AGG | + | chr1_4:72771168-72771187 | Msa0183770:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr1_4:72771265-72771284 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr1_4:72771266-72771285 | None:intergenic | 40.0% | |
| ATTTCTTGCGGCTGCAAATT+GGG | - | chr1_4:72771446-72771465 | None:intergenic | 40.0% | |
| TATTTCTTGCGGCTGCAAAT+TGG | - | chr1_4:72771447-72771466 | None:intergenic | 40.0% | |
| CCATGACCTTTACACAAGAA+AGG | - | chr1_4:72771807-72771826 | None:intergenic | 40.0% | |
| CCTTTCTTGTGTAAAGGTCA+TGG | + | chr1_4:72771804-72771823 | Msa0183770:intron | 40.0% | |
| ! | AGAGCATTCATGCGAATGTA+GGG | - | chr1_4:72771921-72771940 | None:intergenic | 40.0% |
| GTCTGGAAAACCATCAAACT+GGG | - | chr1_4:72772040-72772059 | None:intergenic | 40.0% | |
| TGTCTGGAAAACCATCAAAC+TGG | - | chr1_4:72772041-72772060 | None:intergenic | 40.0% | |
| ! | GCTAATAAAGTAGAGGCACA+AGG | - | chr1_4:72772101-72772120 | None:intergenic | 40.0% |
| GAGATGCCTGCAAAGTTATA+TGG | + | chr1_4:72772416-72772435 | Msa0183770:three_prime_UTR | 40.0% | |
| AGAAATCGAGATCGGGGAAA+TGG | - | chr1_4:72769310-72769329 | None:intergenic | 45.0% | |
| ATTTCCCCGATCTCGATTTC+TGG | + | chr1_4:72769309-72769328 | Msa0183770:five_prime_UTR | 45.0% | |
| AGAACCAGAAATCGAGATCG+GGG | - | chr1_4:72769316-72769335 | None:intergenic | 45.0% | |
| GAAACTGCAACATCAACCGT+AGG | - | chr1_4:72769346-72769365 | None:intergenic | 45.0% | |
| GATTGGAGAAGGAGTTTAGG+AGG | - | chr1_4:72769386-72769405 | None:intergenic | 45.0% | |
| GATATGCCTACACCCATGAT+TGG | - | chr1_4:72769403-72769422 | None:intergenic | 45.0% | |
| TGAGACGAGGAATGAGACTA+AGG | - | chr1_4:72769524-72769543 | None:intergenic | 45.0% | |
| GTAAGGGAAGATCGATGGAA+GGG | - | chr1_4:72769558-72769577 | None:intergenic | 45.0% | |
| AGTAAGGGAAGATCGATGGA+AGG | - | chr1_4:72769559-72769578 | None:intergenic | 45.0% | |
| GAGAAGTAAGGGAAGATCGA+TGG | - | chr1_4:72769563-72769582 | None:intergenic | 45.0% | |
| ! | GAGGTTTTGCCGAGAAGTAA+GGG | - | chr1_4:72769574-72769593 | None:intergenic | 45.0% |
| CGGTGAACCACCTTATAGTA+AGG | + | chr1_4:72769684-72769703 | Msa0183770:CDS | 45.0% | |
| !! | CATGATGGACTTTACGTTGG+TGG | + | chr1_4:72769709-72769728 | Msa0183770:CDS | 45.0% |
| !! | ATGGACTTTACGTTGGTGGT+TGG | + | chr1_4:72769713-72769732 | Msa0183770:CDS | 45.0% |
| AATAATAGCAGGATCACCCG+GGG | - | chr1_4:72769761-72769780 | None:intergenic | 45.0% | |
| CAATAATAGCAGGATCACCC+GGG | - | chr1_4:72769762-72769781 | None:intergenic | 45.0% | |
| CCGAGGTTGAAAAGTTTGAG+TGG | + | chr1_4:72769799-72769818 | Msa0183770:CDS | 45.0% | |
| GGAGATCTAGTATCCCAAGT+AGG | - | chr1_4:72769847-72769866 | None:intergenic | 45.0% | |
| GATACTAGATCTCCTCAACC+TGG | + | chr1_4:72769853-72769872 | Msa0183770:CDS | 45.0% | |
| TTAAATGGGCGCTTCGTAAG+AGG | + | chr1_4:72769893-72769912 | Msa0183770:CDS | 45.0% | |
| TAAATGGGCGCTTCGTAAGA+GGG | + | chr1_4:72769894-72769913 | Msa0183770:CDS | 45.0% | |
| TGACCCCACTTAGTGGAATA+AGG | + | chr1_4:72770079-72770098 | Msa0183770:intron | 45.0% | |
| !! | GAGCCTTATTCCACTAAGTG+GGG | - | chr1_4:72770085-72770104 | None:intergenic | 45.0% |
| !! | CGAGCCTTATTCCACTAAGT+GGG | - | chr1_4:72770086-72770105 | None:intergenic | 45.0% |
| CCACTTAGTGGAATAAGGCT+CGG | + | chr1_4:72770084-72770103 | Msa0183770:intron | 45.0% | |
| TGCACACCAATGACTTATGC+TGG | + | chr1_4:72770170-72770189 | Msa0183770:intron | 45.0% | |
| CAAGGTCCAGCATAAGTCAT+TGG | - | chr1_4:72770179-72770198 | None:intergenic | 45.0% | |
| TGACTTATGCTGGACCTTGA+TGG | + | chr1_4:72770180-72770199 | Msa0183770:intron | 45.0% | |
| GATAAAGGGAGCGGTGATAA+AGG | + | chr1_4:72770727-72770746 | Msa0183770:intron | 45.0% | |
| GCGGTGATAAAGGGAAATGT+TGG | + | chr1_4:72770737-72770756 | Msa0183770:intron | 45.0% | |
| AACTCCTCGTCCTGTTTACT+GGG | + | chr1_4:72771017-72771036 | Msa0183770:intron | 45.0% | |
| GTGCTAAACACCCAGTAAAC+AGG | - | chr1_4:72771030-72771049 | None:intergenic | 45.0% | |
| TTTCTTGCGGCTGCAAATTG+GGG | - | chr1_4:72771445-72771464 | None:intergenic | 45.0% | |
| ATCATGGTCTTTCTTCCCCA+GGG | - | chr1_4:72771485-72771504 | None:intergenic | 45.0% | |
| AATCATGGTCTTTCTTCCCC+AGG | - | chr1_4:72771486-72771505 | None:intergenic | 45.0% | |
| ATATTCCTAGGTCCCTGCAT+AGG | + | chr1_4:72771586-72771605 | Msa0183770:intron | 45.0% | |
| TGTGCACTGTTAGTTGCACT+AGG | + | chr1_4:72771846-72771865 | Msa0183770:CDS | 45.0% | |
| ! | CACTAGGTGTCACAGATGAT+TGG | + | chr1_4:72771862-72771881 | Msa0183770:CDS | 45.0% |
| !! | GAGAGCATTCATGCGAATGT+AGG | - | chr1_4:72771922-72771941 | None:intergenic | 45.0% |
| ATTCTTCAAGTGCCTTGCGA+TGG | - | chr1_4:72771944-72771963 | None:intergenic | 45.0% | |
| ! | ATCGCAAGGCACTTGAAGAA+TGG | + | chr1_4:72771943-72771962 | Msa0183770:CDS | 45.0% |
| ATGGGCATTACACGATGCAA+TGG | - | chr1_4:72772277-72772296 | None:intergenic | 45.0% | |
| ATTGCATCGTGTAATGCCCA+TGG | + | chr1_4:72772276-72772295 | Msa0183770:three_prime_UTR | 45.0% | |
| TGTTATCTGGTTGACGCACG+CGG | - | chr1_4:72769279-72769298 | None:intergenic | 50.0% | |
| CCTACACCCATGATTGGAGA+AGG | - | chr1_4:72769397-72769416 | None:intergenic | 50.0% | |
| CCTTCTCCAATCATGGGTGT+AGG | + | chr1_4:72769394-72769413 | Msa0183770:exon | 50.0% | |
| ! | GGAGGTTTTGCCGAGAAGTA+AGG | - | chr1_4:72769575-72769594 | None:intergenic | 50.0% |
| AATTGGGAATGTTCCGTCGG+AGG | - | chr1_4:72769593-72769612 | None:intergenic | 50.0% | |
| !!! | GCTTTTTCGTCTTCGAAGCG+CGG | - | chr1_4:72769665-72769684 | None:intergenic | 50.0% |
| GCGCTTCGAAGACGAAAAAG+CGG | + | chr1_4:72769664-72769683 | Msa0183770:CDS | 50.0% | |
| ATAATAGCAGGATCACCCGG+GGG | - | chr1_4:72769760-72769779 | None:intergenic | 50.0% | |
| ACTAAGTGGGGTCAGCTACA+TGG | - | chr1_4:72770073-72770092 | None:intergenic | 50.0% | |
| ATGTAGCTGACCCCACTTAG+TGG | + | chr1_4:72770072-72770091 | Msa0183770:intron | 50.0% | |
| !! | CCGAGCCTTATTCCACTAAG+TGG | - | chr1_4:72770087-72770106 | None:intergenic | 50.0% |
| CTTAGTGGAATAAGGCTCGG+TGG | + | chr1_4:72770087-72770106 | Msa0183770:intron | 50.0% | |
| GAACTCCTCGTCCTGTTTAC+TGG | + | chr1_4:72771016-72771035 | Msa0183770:intron | 50.0% | |
| AACACCCAGTAAACAGGACG+AGG | - | chr1_4:72771024-72771043 | None:intergenic | 50.0% | |
| TTCTTGCGGCTGCAAATTGG+GGG | - | chr1_4:72771444-72771463 | None:intergenic | 50.0% | |
| TCAGTGCACATGCCTATGCA+GGG | - | chr1_4:72771601-72771620 | None:intergenic | 50.0% | |
| ATCAGTGCACATGCCTATGC+AGG | - | chr1_4:72771602-72771621 | None:intergenic | 50.0% | |
| CATGAATGCTCTCCATCGCA+AGG | + | chr1_4:72771929-72771948 | Msa0183770:CDS | 50.0% | |
| CGATGCAATGGTCTCAACTG+TGG | - | chr1_4:72772265-72772284 | None:intergenic | 50.0% | |
| GGTGTGATGCGATTGAGACG+AGG | - | chr1_4:72769537-72769556 | None:intergenic | 55.0% | |
| CTTCTCGGCAAAACCTCCGA+CGG | + | chr1_4:72769577-72769596 | Msa0183770:CDS | 55.0% | |
| ! | GGCATCTTTTCCGGCGAAGA+AGG | - | chr1_4:72769739-72769758 | None:intergenic | 55.0% |
| TCTTGCGGCTGCAAATTGGG+GGG | - | chr1_4:72771443-72771462 | None:intergenic | 55.0% | |
| TACATCTGTCAACCCCACCC+TGG | + | chr1_4:72771465-72771484 | Msa0183770:intron | 55.0% | |
| ACATCTGTCAACCCCACCCT+GGG | + | chr1_4:72771466-72771485 | Msa0183770:intron | 55.0% | |
| TGGTCTTTCTTCCCCAGGGT+GGG | - | chr1_4:72771481-72771500 | None:intergenic | 55.0% | |
| ATGGTCTTTCTTCCCCAGGG+TGG | - | chr1_4:72771482-72771501 | None:intergenic | 55.0% | |
| ACATGCCTATGCAGGGACCT+AGG | - | chr1_4:72771594-72771613 | None:intergenic | 55.0% | |
| !! | TGGTGGTTGGCCTTCTTCGC+CGG | + | chr1_4:72769726-72769745 | Msa0183770:CDS | 60.0% |
| TTCGCCGGAAAAGATGCCCC+CGG | + | chr1_4:72769741-72769760 | Msa0183770:CDS | 60.0% | |
| !!! | TCACCCGGGGGCATCTTTTC+CGG | - | chr1_4:72769748-72769767 | None:intergenic | 60.0% |
| TTGCGGCTGCAAATTGGGGG+GGG | - | chr1_4:72771441-72771460 | None:intergenic | 60.0% | |
| CTTGCGGCTGCAAATTGGGG+GGG | - | chr1_4:72771442-72771461 | None:intergenic | 60.0% | |
| CATCTGTCAACCCCACCCTG+GGG | + | chr1_4:72771467-72771486 | Msa0183770:intron | 60.0% | |
| GGTCTTTCTTCCCCAGGGTG+GGG | - | chr1_4:72771480-72771499 | None:intergenic | 60.0% | |
| TCGCCGGAAAAGATGCCCCC+GGG | + | chr1_4:72769742-72769761 | Msa0183770:CDS | 65.0% | |
| TGCGGCTGCAAATTGGGGGG+GGG | - | chr1_4:72771440-72771459 | None:intergenic | 65.0% | |
| TGCAAATTGGGGGGGGGGGG+GGG | - | chr1_4:72771434-72771453 | None:intergenic | 70.0% | |
| CTGCAAATTGGGGGGGGGGG+GGG | - | chr1_4:72771435-72771454 | None:intergenic | 70.0% | |
| GCTGCAAATTGGGGGGGGGG+GGG | - | chr1_4:72771436-72771455 | None:intergenic | 70.0% | |
| GGCTGCAAATTGGGGGGGGG+GGG | - | chr1_4:72771437-72771456 | None:intergenic | 70.0% | |
| CGGCTGCAAATTGGGGGGGG+GGG | - | chr1_4:72771438-72771457 | None:intergenic | 70.0% | |
| GCGGCTGCAAATTGGGGGGG+GGG | - | chr1_4:72771439-72771458 | None:intergenic | 70.0% | |
| CAAATTGGGGGGGGGGGGGG+GGG | - | chr1_4:72771432-72771451 | None:intergenic | 75.0% | |
| GCAAATTGGGGGGGGGGGGG+GGG | - | chr1_4:72771433-72771452 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 72769267 | 72772585 | 72769267 | ID=Msa0183770;Name=Msa0183770 |
| chr1_4 | mRNA | 72769267 | 72772585 | 72769267 | ID=Msa0183770-mRNA-1;Parent=Msa0183770;Name=Msa0183770-mRNA-1;_AED=0.01;_eAED=0.01;_QI=139|1|1|1|1|1|2|581|243 |
| chr1_4 | exon | 72769267 | 72769952 | 72769267 | ID=Msa0183770-mRNA-1:exon:24626;Parent=Msa0183770-mRNA-1 |
| chr1_4 | exon | 72771820 | 72772585 | 72771820 | ID=Msa0183770-mRNA-1:exon:24627;Parent=Msa0183770-mRNA-1 |
| chr1_4 | five_prime_UTR | 72769267 | 72769405 | 72769267 | ID=Msa0183770-mRNA-1:five_prime_utr;Parent=Msa0183770-mRNA-1 |
| chr1_4 | CDS | 72769406 | 72769952 | 72769406 | ID=Msa0183770-mRNA-1:cds;Parent=Msa0183770-mRNA-1 |
| chr1_4 | CDS | 72771820 | 72772004 | 72771820 | ID=Msa0183770-mRNA-1:cds;Parent=Msa0183770-mRNA-1 |
| chr1_4 | three_prime_UTR | 72772005 | 72772585 | 72772005 | ID=Msa0183770-mRNA-1:three_prime_utr;Parent=Msa0183770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
