AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0614020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0614020 MtrunA17_Chr4g0049821 94.724 398 16 2 1 393 1 398 0.0 754
Msa0614020 MtrunA17_Chr7g0241071 41.646 413 204 12 1 380 1 409 1.66e-92 283
Msa0614020 MtrunA17_Chr2g0278581 42.122 311 155 7 82 378 32 331 4.06e-75 236
Msa0614020 MtrunA17_Chr6g0463901 40.909 308 165 6 82 379 32 332 1.91e-73 232
Msa0614020 MtrunA17_Chr3g0113101 26.148 283 170 12 119 386 120 378 1.17e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0614020 AT5G64380.1 76.667 360 73 3 40 393 50 404 0.0 562
Msa0614020 AT3G54050.2 46.729 321 151 6 79 380 96 415 1.19e-91 282
Msa0614020 AT3G54050.1 46.729 321 151 6 79 380 96 415 1.19e-91 282
Msa0614020 AT1G43670.1 41.956 317 167 7 82 388 32 341 6.89e-79 246
Msa0614020 AT3G55800.1 27.273 286 169 14 119 389 127 388 1.81e-14 74.7

Find 94 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGCATTACCTTTGGCTC+TGG 0.272844 4_2:-62936386 Msa0614020:CDS
TCCCTATCAGAACCACTATT+TGG 0.303466 4_2:+62937933 None:intergenic
AGTCTTTGGTGCAGTTTAAC+TGG 0.327999 4_2:+62935410 None:intergenic
ATTCACTCCAAAGTGGAAAT+AGG 0.331263 4_2:-62936451 Msa0614020:CDS
CTCCATCGAACTTTGTTGTA+TGG 0.346740 4_2:-62935557 Msa0614020:CDS
TACCTTGCAGAGTACTTCTT+AGG 0.348324 4_2:+62935602 None:intergenic
ATATATTTCCTTAAGCCTTC+AGG 0.350818 4_2:+62935656 None:intergenic
GTAAAACCACTATCAGTCTT+AGG 0.354058 4_2:-62938143 Msa0614020:CDS
GTAGGTAAAGGAGGTGGAAT+TGG 0.362077 4_2:-62938056 Msa0614020:CDS
GGTTGGAAAGTTTGAAGCTT+TGG 0.362731 4_2:+62938215 None:intergenic
TTGATTGGCCTGAAGGCTTA+AGG 0.371460 4_2:-62935664 Msa0614020:CDS
CTTGTTACTGAAGCCATTGT+TGG 0.385235 4_2:+62938167 None:intergenic
AATTGGTGTGAATGATGATT+TGG 0.387215 4_2:-62938039 Msa0614020:CDS
TTCACTCTCGACCGTTCAAC+AGG 0.404800 4_2:-62936353 Msa0614020:CDS
ATGGAAGAGTTGGAAAGTTA+TGG 0.406247 4_2:-62935359 Msa0614020:CDS
ACCATTGATATGCCAAATAG+TGG 0.413324 4_2:-62937945 Msa0614020:CDS
CTATCAGCCTATTTCCACTT+TGG 0.418294 4_2:+62936444 None:intergenic
AAAAGTAAATCCTGGTTATG+AGG 0.419122 4_2:-62935324 Msa0614020:CDS
GGATCTGTCACGACCACATA+TGG 0.420264 4_2:+62936587 None:intergenic
GAAGGTGATGAGTTGATAGA+AGG 0.422120 4_2:+62938241 None:intergenic
GATATAATATCAAGAGGCTT+TGG 0.431354 4_2:+62937906 None:intergenic
GGAAATAGGCTGATAGCTTC+TGG 0.433737 4_2:-62936437 Msa0614020:CDS
TCCATCGAACTTTGTTGTAT+GGG 0.439545 4_2:-62935556 Msa0614020:CDS
TGCCAAATAGTGGTTCTGAT+AGG 0.439936 4_2:-62937935 Msa0614020:CDS
AAAGCCTCTTGATATTATAT+CGG 0.440217 4_2:-62937904 Msa0614020:intron
ACTATACTCTGCATTACCTT+TGG 0.441406 4_2:-62936392 Msa0614020:CDS
AAATATATTAACACAAATGA+TGG 0.448892 4_2:+62935200 None:intergenic
AACATAGTTACAAATAAGTT+AGG 0.449299 4_2:+62935255 None:intergenic
TTTGGAAGACATGGAAGAGT+TGG 0.453917 4_2:-62935369 Msa0614020:CDS
CCATTGTTGGAGTGAAGAAA+AGG 0.457793 4_2:+62938180 None:intergenic
ATCTGGAAAAGTTGCTGTCA+TGG 0.460073 4_2:-62936654 Msa0614020:CDS
ATTAACACAAATGATGGATA+AGG 0.461953 4_2:+62935206 None:intergenic
TCAACAGTAGCAAGTGATGA+TGG 0.462555 4_2:-62938101 Msa0614020:CDS
CCATCGAACTTTGTTGTATG+GGG 0.479077 4_2:-62935555 Msa0614020:CDS
ATTGATGCATCCATACCAAC+TGG 0.487257 4_2:-62936545 Msa0614020:CDS
CTTCATAAACAAGACGAAGA+TGG 0.490062 4_2:+62935510 None:intergenic
TCTGCATTACCTTTGGCTCT+GGG 0.492545 4_2:-62936385 Msa0614020:CDS
GAAAATTGTACCAGTTGGTA+TGG 0.498000 4_2:+62936535 None:intergenic
GCCAAATAGTGGTTCTGATA+GGG 0.510565 4_2:-62937934 Msa0614020:CDS
GTGGAGCAAGCTGGTGGGAG+AGG 0.519722 4_2:-62935467 Msa0614020:CDS
AGTTTGAAGCTTTGGTCGGA+AGG 0.522108 4_2:+62938223 None:intergenic
TGATGGGTCTGTTACATTGA+TGG 0.523388 4_2:-62938084 Msa0614020:CDS
GAAGTACCTAAGACTGATAG+TGG 0.526082 4_2:+62938137 None:intergenic
ACCACTATTTGGCATATCAA+TGG 0.526712 4_2:+62937944 None:intergenic
TAATCTGCCCACAGAGGAGA+AGG 0.532639 4_2:-62936483 Msa0614020:CDS
TGCTCCACGATGAAACTAAG+AGG 0.534585 4_2:+62935482 None:intergenic
TTGATGGAGTATGTAGGTAA+AGG 0.537527 4_2:-62938068 Msa0614020:CDS
ATGGAGTATGTAGGTAAAGG+AGG 0.539783 4_2:-62938065 Msa0614020:CDS
AGCAAAGCCTTCTCCTCTGT+GGG 0.541176 4_2:+62936476 None:intergenic
GAGTATGTAGGTAAAGGAGG+TGG 0.541348 4_2:-62938062 Msa0614020:CDS
CCAACTTGGATAAGTGATGA+TGG 0.545731 4_2:-62936611 Msa0614020:CDS
CATTGTTGGAGTGAAGAAAA+GGG 0.551735 4_2:+62938181 None:intergenic
GTTGGAGTGAAGAAAAGGGT+TGG 0.561218 4_2:+62938185 None:intergenic
CGGTATTTATAAACGCCTTG+AGG 0.565322 4_2:-62936513 Msa0614020:CDS
AGTTTCATCGTGGAGCAAGC+TGG 0.566038 4_2:-62935476 Msa0614020:CDS
CCATCATCACTTATCCAAGT+TGG 0.566146 4_2:+62936611 None:intergenic
TTTAGGGAGTTTGGAAGACA+TGG 0.568162 4_2:-62935378 Msa0614020:CDS
AAGAAAATGATACACCAACT+TGG 0.571987 4_2:-62936625 Msa0614020:CDS
GGGGTGTGGCGATGAATCCG+AGG 0.573022 4_2:-62935535 Msa0614020:CDS
AAATAAGTTAGGAAACATGA+AGG 0.578210 4_2:+62935266 None:intergenic
CAACAGTAGCAAGTGATGAT+GGG 0.579069 4_2:-62938100 Msa0614020:CDS
GATACTGTGAGACAAGGAAA+AGG 0.580838 4_2:-62935632 Msa0614020:CDS
TTGCTGAATTCACTCCAAAG+TGG 0.581831 4_2:-62936458 Msa0614020:CDS
GTTACATTGATGGAGTATGT+AGG 0.584657 4_2:-62938074 Msa0614020:CDS
CAGCAAAGCCTTCTCCTCTG+TGG 0.586371 4_2:+62936475 None:intergenic
TGCATGTGTCCCAGAGCCAA+AGG 0.587943 4_2:+62936376 None:intergenic
CCCCATACAACAAAGTTCGA+TGG 0.588449 4_2:+62935555 None:intergenic
ATATCAATGGTATAATTGAA+AGG 0.591706 4_2:+62937957 None:intergenic
TTCATCGTGGAGCAAGCTGG+TGG 0.592470 4_2:-62935473 Msa0614020:CDS
GGAAAGTTTGAAGCTTTGGT+CGG 0.593641 4_2:+62938219 None:intergenic
AAGGTGATGAGTTGATAGAA+GGG 0.593820 4_2:+62938242 None:intergenic
ATCCTAAGAAGTACTCTGCA+AGG 0.594963 4_2:-62935604 Msa0614020:CDS
GTCGTGACAGATCCCCTCGA+TGG 0.599505 4_2:-62936578 Msa0614020:CDS
ATACCGAAAATTGTACCAGT+TGG 0.603945 4_2:+62936530 None:intergenic
CATCGAACTTTGTTGTATGG+GGG 0.606647 4_2:-62935554 Msa0614020:CDS
TGCTACTGTTGATGAAGATG+AGG 0.607320 4_2:+62938112 None:intergenic
CACACCGATATAATATCAAG+AGG 0.613129 4_2:+62937900 None:intergenic
GGGTGTGGCGATGAATCCGA+GGG 0.615240 4_2:-62935534 Msa0614020:CDS
TAGCATCAAACCTCATAACC+AGG 0.619050 4_2:+62935314 None:intergenic
GCAGATTATCTAGCTCCTCA+AGG 0.619596 4_2:+62936498 None:intergenic
AATATTTCGAGAACCATCGA+GGG 0.619869 4_2:+62936565 None:intergenic
ACAAGACGAAGATGGTCCCT+CGG 0.621507 4_2:+62935518 None:intergenic
GCTCCACGATGAAACTAAGA+GGG 0.623232 4_2:+62935483 None:intergenic
GAATGAAGTCTCCTGTTGAA+CGG 0.631390 4_2:+62936342 None:intergenic
GCTGGTGGGAGAGGATCCGA+TGG 0.631525 4_2:-62935458 Msa0614020:CDS
AAGTGATGATGGTCCATATG+TGG 0.632479 4_2:-62936600 Msa0614020:CDS
TCATCGTGGAGCAAGCTGGT+GGG 0.634727 4_2:-62935472 Msa0614020:CDS
CAATATTTCGAGAACCATCG+AGG 0.656931 4_2:+62936564 None:intergenic
AGCATTAAAATTCCTCCCCG+TGG 0.680772 4_2:-62936308 Msa0614020:intron
TATATTGATACTGTGAGACA+AGG 0.681648 4_2:-62935638 Msa0614020:CDS
GCTAGATAATCTGCCCACAG+AGG 0.689544 4_2:-62936489 Msa0614020:CDS
GTGCATATGTTACCACGGGG+AGG 0.701876 4_2:+62936296 None:intergenic
ATATTTCGAGAACCATCGAG+GGG 0.721395 4_2:+62936566 None:intergenic
AAACCCTCTTAGTTTCATCG+TGG 0.730924 4_2:-62935486 Msa0614020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATACAATATTTTTATATT+TGG + chr4_2:62936088-62936107 None:intergenic 10.0%
!! TATAAAATATCTATCAAATT+AGG + chr4_2:62937241-62937260 None:intergenic 10.0%
!!! ATAAAAAACACTTTAAAAGT+CGG - chr4_2:62935896-62935915 Msa0614020:intron 15.0%
!! TTTCTATTAGGTTTAAATAT+CGG + chr4_2:62936185-62936204 None:intergenic 15.0%
!! ACATTAATGCTTATAATTTA+AGG - chr4_2:62937359-62937378 Msa0614020:intron 15.0%
!! TATAAAAATAAACTGAAAAC+AGG - chr4_2:62937557-62937576 Msa0614020:intron 15.0%
!! AAATATATTAACACAAATGA+TGG + chr4_2:62938266-62938285 None:intergenic 15.0%
!! ATATCAATGGTATAATTGAA+AGG + chr4_2:62935509-62935528 None:intergenic 20.0%
!! AACTCAATATAGCATAAATT+AGG - chr4_2:62935872-62935891 Msa0614020:intron 20.0%
!! TATTAGAAAATAAGTCATCT+AGG - chr4_2:62936038-62936057 Msa0614020:intron 20.0%
!! TTCTATTAGGTTTAAATATC+GGG + chr4_2:62936184-62936203 None:intergenic 20.0%
!!! TTCAAAATTTTGAGAATTGA+GGG - chr4_2:62936256-62936275 Msa0614020:intron 20.0%
!! GTTCTATTAATGTTGTTAAA+TGG - chr4_2:62936536-62936555 Msa0614020:CDS 20.0%
!! TAACAAAACCCTTTATTAAA+AGG - chr4_2:62936709-62936728 Msa0614020:intron 20.0%
!!! CTCTTTTTCCTTTTAATAAA+GGG + chr4_2:62936720-62936739 None:intergenic 20.0%
!!! TCTCTTTTTCCTTTTAATAA+AGG + chr4_2:62936721-62936740 None:intergenic 20.0%
!!! TTGATAATATAACAGAAGAT+AGG + chr4_2:62937267-62937286 None:intergenic 20.0%
!! TCTGTTATATTATCAAATGT+TGG - chr4_2:62937271-62937290 Msa0614020:intron 20.0%
!! TTAAGCTATTTATCAAGAAA+GGG + chr4_2:62937385-62937404 None:intergenic 20.0%
!!! TTTATTTTTATAAGCTCTTC+AGG + chr4_2:62937549-62937568 None:intergenic 20.0%
!! AACATAGTTACAAATAAGTT+AGG + chr4_2:62938211-62938230 None:intergenic 20.0%
!! GTGTCAAAATGTTTTCATTT+GGG + chr4_2:62935176-62935195 None:intergenic 25.0%
!! AGTGTCAAAATGTTTTCATT+TGG + chr4_2:62935177-62935196 None:intergenic 25.0%
! AAAGCCTCTTGATATTATAT+CGG - chr4_2:62935559-62935578 Msa0614020:CDS 25.0%
! AAAAAAATCATCCAAACTCA+TGG + chr4_2:62935609-62935628 None:intergenic 25.0%
!! TTTGTGTGTTGTTGTTAATT+GGG - chr4_2:62935677-62935696 Msa0614020:CDS 25.0%
! GTAAGTTATATGAAAACACA+AGG + chr4_2:62936217-62936236 None:intergenic 25.0%
!!! CTTCAAAATTTTGAGAATTG+AGG - chr4_2:62936255-62936274 Msa0614020:intron 25.0%
!! TTACATTAATTTTCGATGAG+TGG + chr4_2:62936326-62936345 None:intergenic 25.0%
! TTCTACAACTTAGATATAAG+GGG + chr4_2:62936353-62936372 None:intergenic 25.0%
! GTTCTACAACTTAGATATAA+GGG + chr4_2:62936354-62936373 None:intergenic 25.0%
! TGTTCTACAACTTAGATATA+AGG + chr4_2:62936355-62936374 None:intergenic 25.0%
!! GTTTGTCATAATGGAAATAT+AGG + chr4_2:62936515-62936534 None:intergenic 25.0%
! AATAGAACAGTTTGTCATAA+TGG + chr4_2:62936524-62936543 None:intergenic 25.0%
!!! AATGTTGTTAAATGGATTGT+TGG - chr4_2:62936544-62936563 Msa0614020:CDS 25.0%
!!! ATGTTGTTAAATGGATTGTT+GGG - chr4_2:62936545-62936564 Msa0614020:CDS 25.0%
!! TTTTGATCTTATGTCAGAAT+TGG - chr4_2:62936575-62936594 Msa0614020:CDS 25.0%
!!! TCAGTAATGGGTTTAAAAAT+AGG + chr4_2:62936602-62936621 None:intergenic 25.0%
!! TAAGGCTAATTTTCTTTCAT+TGG - chr4_2:62937306-62937325 Msa0614020:intron 25.0%
! GTTAAGCTATTTATCAAGAA+AGG + chr4_2:62937386-62937405 None:intergenic 25.0%
!!! ATGATGCAAGATATTTTGAT+TGG - chr4_2:62937784-62937803 Msa0614020:intron 25.0%
! AAATAAGTTAGGAAACATGA+AGG + chr4_2:62938200-62938219 None:intergenic 25.0%
!!! ATTAACACAAATGATGGATA+AGG + chr4_2:62938260-62938279 None:intergenic 25.0%
!!! TCTTCACTTTTGTTTTTCTT+GGG - chr4_2:62938291-62938310 Msa0614020:five_prime_UTR 25.0%
! ACACATTTTCCTCCTTTTTT+GGG + chr4_2:62935152-62935171 None:intergenic 30.0%
! AAGAAAAGGGTTGGAATTTT+TGG + chr4_2:62935272-62935291 None:intergenic 30.0%
AATTGGTGTGAATGATGATT+TGG - chr4_2:62935424-62935443 Msa0614020:CDS 30.0%
GATATAATATCAAGAGGCTT+TGG + chr4_2:62935560-62935579 None:intergenic 30.0%
TCTATTGAATTCCATGAGTT+TGG - chr4_2:62935595-62935614 Msa0614020:CDS 30.0%
!! TTTTCCCTTTTTGATTGTCT+TGG - chr4_2:62935627-62935646 Msa0614020:CDS 30.0%
CTAACCAAGACAATCAAAAA+GGG + chr4_2:62935634-62935653 None:intergenic 30.0%
ACTAACCAAGACAATCAAAA+AGG + chr4_2:62935635-62935654 None:intergenic 30.0%
! GTTTGTGTGTTGTTGTTAAT+TGG - chr4_2:62935676-62935695 Msa0614020:CDS 30.0%
ATTGGGAATCATGACAAAAT+CGG - chr4_2:62935694-62935713 Msa0614020:CDS 30.0%
AAATCGGTGGTTGAAAATAT+TGG - chr4_2:62935710-62935729 Msa0614020:intron 30.0%
AATCGGTGGTTGAAAATATT+GGG - chr4_2:62935711-62935730 Msa0614020:intron 30.0%
CTCTTAAGAAGAAGAATAAG+TGG - chr4_2:62935780-62935799 Msa0614020:intron 30.0%
TGGGTAGAAACATATATACA+GGG + chr4_2:62935828-62935847 None:intergenic 30.0%
TTGTTACAAAGGTAATTTGG+TGG + chr4_2:62935978-62935997 None:intergenic 30.0%
!! AGCTTGTTACAAAGGTAATT+TGG + chr4_2:62935981-62936000 None:intergenic 30.0%
AAATTACCTTTGTAACAAGC+TGG - chr4_2:62935980-62935999 Msa0614020:intron 30.0%
AGAAAATAAGTCATCTAGGT+CGG - chr4_2:62936042-62936061 Msa0614020:intron 30.0%
! AGGATGACTCATTTTCTATT+AGG + chr4_2:62936197-62936216 None:intergenic 30.0%
!! TCAAAATTTTGAAGACCCTT+GGG + chr4_2:62936249-62936268 None:intergenic 30.0%
CTCTAACATAAGAGTTTCTA+AGG + chr4_2:62936428-62936447 None:intergenic 30.0%
TAGTATGGTACATCAGTAAT+GGG + chr4_2:62936614-62936633 None:intergenic 30.0%
CTAGCCATTATGTATGTAAA+AGG - chr4_2:62936668-62936687 Msa0614020:CDS 30.0%
! ACAGCCTTTTACATACATAA+TGG + chr4_2:62936675-62936694 None:intergenic 30.0%
TTTCATTCTGCAATAATGCA+TGG + chr4_2:62936767-62936786 None:intergenic 30.0%
TTGTCATCACTTCAAAAATC+TGG - chr4_2:62936792-62936811 Msa0614020:intron 30.0%
AAGAAAATGATACACCAACT+TGG - chr4_2:62936838-62936857 Msa0614020:intron 30.0%
! ATACCAACTGGTACAATTTT+CGG - chr4_2:62936930-62936949 Msa0614020:intron 30.0%
TTAAAGTGCATATGTTACCA+CGG + chr4_2:62937175-62937194 None:intergenic 30.0%
AATAAACTGAAAACAGGCTA+TGG - chr4_2:62937563-62937582 Msa0614020:intron 30.0%
TTTCCACTGAAAACAACTTA+TGG - chr4_2:62937600-62937619 Msa0614020:intron 30.0%
AAACTGTTTGGTTGAGTTTA+TGG + chr4_2:62937644-62937663 None:intergenic 30.0%
CAGTCAACAACATAAACTTA+GGG + chr4_2:62937725-62937744 None:intergenic 30.0%
ATATATTTCCTTAAGCCTTC+AGG + chr4_2:62937810-62937829 None:intergenic 30.0%
TATATTGATACTGTGAGACA+AGG - chr4_2:62937825-62937844 Msa0614020:intron 30.0%
!!! AAGAATCCTACTTTTTCCAT+CGG + chr4_2:62938024-62938043 None:intergenic 30.0%
! AAAGACTTCCTCTCTTTTTA+GGG - chr4_2:62938069-62938088 Msa0614020:CDS 30.0%
GTACAACAAAAAGTAAATCC+TGG - chr4_2:62938131-62938150 Msa0614020:CDS 30.0%
AAAAGTAAATCCTGGTTATG+AGG - chr4_2:62938139-62938158 Msa0614020:CDS 30.0%
!!! CTCTTCACTTTTGTTTTTCT+TGG - chr4_2:62938290-62938309 Msa0614020:five_prime_UTR 30.0%
! CACACATTTTCCTCCTTTTT+TGG + chr4_2:62935153-62935172 None:intergenic 35.0%
!! AAGGTGATGAGTTGATAGAA+GGG + chr4_2:62935224-62935243 None:intergenic 35.0%
!!! AAAGGGTTGGAATTTTTGGT+TGG + chr4_2:62935268-62935287 None:intergenic 35.0%
CATTGTTGGAGTGAAGAAAA+GGG + chr4_2:62935285-62935304 None:intergenic 35.0%
GTAAAACCACTATCAGTCTT+AGG - chr4_2:62935320-62935339 Msa0614020:CDS 35.0%
GTTACATTGATGGAGTATGT+AGG - chr4_2:62935389-62935408 Msa0614020:CDS 35.0%
TTGATGGAGTATGTAGGTAA+AGG - chr4_2:62935395-62935414 Msa0614020:CDS 35.0%
ACCATTGATATGCCAAATAG+TGG - chr4_2:62935518-62935537 Msa0614020:CDS 35.0%
ACCACTATTTGGCATATCAA+TGG + chr4_2:62935522-62935541 None:intergenic 35.0%
CACACCGATATAATATCAAG+AGG + chr4_2:62935566-62935585 None:intergenic 35.0%
! TTTTTGTCAAGTAGCCACAA+TGG - chr4_2:62935748-62935767 Msa0614020:intron 35.0%
!! AAGAGAATTTCTAGCCATTG+TGG + chr4_2:62935765-62935784 None:intergenic 35.0%
GGGTAGAAACATATATACAG+GGG + chr4_2:62935827-62935846 None:intergenic 35.0%
GTGGGTAGAAACATATATAC+AGG + chr4_2:62935829-62935848 None:intergenic 35.0%
!! ACAAAACCAGCTTGTTACAA+AGG + chr4_2:62935989-62936008 None:intergenic 35.0%
!! CAAAATTTTGAAGACCCTTG+GGG + chr4_2:62936248-62936267 None:intergenic 35.0%
!! CTCAAAATTTTGAAGACCCT+TGG + chr4_2:62936250-62936269 None:intergenic 35.0%
ACTGATGCACAGATAGAAAT+AGG + chr4_2:62936299-62936318 None:intergenic 35.0%
CTTATGTTAGAGTGTGTTGA+AGG - chr4_2:62936436-62936455 Msa0614020:CDS 35.0%
CTAGTATGGTACATCAGTAA+TGG + chr4_2:62936615-62936634 None:intergenic 35.0%
GTCAACATTCAAGACTAGTA+TGG + chr4_2:62936629-62936648 None:intergenic 35.0%
ATTCTGCAATAATGCATGGT+GGG + chr4_2:62936763-62936782 None:intergenic 35.0%
AATATTTCGAGAACCATCGA+GGG + chr4_2:62936901-62936920 None:intergenic 35.0%
! GAAAATTGTACCAGTTGGTA+TGG + chr4_2:62936931-62936950 None:intergenic 35.0%
ATACCGAAAATTGTACCAGT+TGG + chr4_2:62936936-62936955 None:intergenic 35.0%
ATTCACTCCAAAGTGGAAAT+AGG - chr4_2:62937012-62937031 Msa0614020:intron 35.0%
ACTATACTCTGCATTACCTT+TGG - chr4_2:62937071-62937090 Msa0614020:intron 35.0%
TAAAGTGCATATGTTACCAC+GGG + chr4_2:62937174-62937193 None:intergenic 35.0%
!! TGTTGGAAGCATCTTACATA+AGG - chr4_2:62937288-62937307 Msa0614020:intron 35.0%
!! AGTCCATAAGTTGTTTTCAG+TGG + chr4_2:62937606-62937625 None:intergenic 35.0%
TTGTGAGTTGTGAAACTGTT+TGG + chr4_2:62937656-62937675 None:intergenic 35.0%
CTCACAAATGTTCATGTCTA+CGG - chr4_2:62937669-62937688 Msa0614020:intron 35.0%
CATAAACTTAGGGACTGTAT+AGG + chr4_2:62937715-62937734 None:intergenic 35.0%
GCAGTCAACAACATAAACTT+AGG + chr4_2:62937726-62937745 None:intergenic 35.0%
!!! AGATATTTTGATTGGCCTGA+AGG - chr4_2:62937792-62937811 Msa0614020:intron 35.0%
! TCCATCGAACTTTGTTGTAT+GGG - chr4_2:62937907-62937926 Msa0614020:CDS 35.0%
CTTCATAAACAAGACGAAGA+TGG + chr4_2:62937956-62937975 None:intergenic 35.0%
CTAAAAAGAGAGGAAGTCTT+TGG + chr4_2:62938070-62938089 None:intergenic 35.0%
! CAAAGACTTCCTCTCTTTTT+AGG - chr4_2:62938068-62938087 Msa0614020:CDS 35.0%
ATGGAAGAGTTGGAAAGTTA+TGG - chr4_2:62938104-62938123 Msa0614020:CDS 35.0%
!!! CTTTTGTTTTTCTTGGGAGA+TGG - chr4_2:62938297-62938316 Msa0614020:five_prime_UTR 35.0%
!! GAAGGTGATGAGTTGATAGA+AGG + chr4_2:62935225-62935244 None:intergenic 40.0%
! GGAAAGTTTGAAGCTTTGGT+CGG + chr4_2:62935247-62935266 None:intergenic 40.0%
! GGTTGGAAAGTTTGAAGCTT+TGG + chr4_2:62935251-62935270 None:intergenic 40.0%
CCATTGTTGGAGTGAAGAAA+AGG + chr4_2:62935286-62935305 None:intergenic 40.0%
! CCTTTTCTTCACTCCAACAA+TGG - chr4_2:62935283-62935302 Msa0614020:three_prime_UTR 40.0%
CTTGTTACTGAAGCCATTGT+TGG + chr4_2:62935299-62935318 None:intergenic 40.0%
! GAAGTACCTAAGACTGATAG+TGG + chr4_2:62935329-62935348 None:intergenic 40.0%
! TGCTACTGTTGATGAAGATG+AGG + chr4_2:62935354-62935373 None:intergenic 40.0%
TCAACAGTAGCAAGTGATGA+TGG - chr4_2:62935362-62935381 Msa0614020:CDS 40.0%
CAACAGTAGCAAGTGATGAT+GGG - chr4_2:62935363-62935382 Msa0614020:CDS 40.0%
! TGATGGGTCTGTTACATTGA+TGG - chr4_2:62935379-62935398 Msa0614020:CDS 40.0%
ATGGAGTATGTAGGTAAAGG+AGG - chr4_2:62935398-62935417 Msa0614020:CDS 40.0%
!! TGCCAAATAGTGGTTCTGAT+AGG - chr4_2:62935528-62935547 Msa0614020:CDS 40.0%
!! GCCAAATAGTGGTTCTGATA+GGG - chr4_2:62935529-62935548 Msa0614020:CDS 40.0%
TCCCTATCAGAACCACTATT+TGG + chr4_2:62935533-62935552 None:intergenic 40.0%
AGAAGAATAAGTGGTGTGTC+AGG - chr4_2:62935789-62935808 Msa0614020:intron 40.0%
GAAGAATAAGTGGTGTGTCA+GGG - chr4_2:62935790-62935809 Msa0614020:intron 40.0%
!!! ACAAGCTGGTTTTGTAGAGA+TGG - chr4_2:62935994-62936013 Msa0614020:intron 40.0%
!!! CAAGCTGGTTTTGTAGAGAT+GGG - chr4_2:62935995-62936014 Msa0614020:intron 40.0%
TGGCCTAATTCAACTCTACA+AGG + chr4_2:62936068-62936087 None:intergenic 40.0%
ACTTTGTTGGATGACTCGAA+TGG + chr4_2:62936122-62936141 None:intergenic 40.0%
AGTGACGAGTATCACTTTGT+TGG + chr4_2:62936135-62936154 None:intergenic 40.0%
ATACTCGTCACTCTACGAAT+TGG - chr4_2:62936143-62936162 Msa0614020:intron 40.0%
AACTTACCAATTAAGCCCCA+AGG - chr4_2:62936230-62936249 Msa0614020:intron 40.0%
ACTTACCAATTAAGCCCCAA+GGG - chr4_2:62936231-62936250 Msa0614020:intron 40.0%
TTCTGCAATAATGCATGGTG+GGG + chr4_2:62936762-62936781 None:intergenic 40.0%
CATTCTGCAATAATGCATGG+TGG + chr4_2:62936764-62936783 None:intergenic 40.0%
ATCTGGAAAAGTTGCTGTCA+TGG - chr4_2:62936809-62936828 Msa0614020:intron 40.0%
CCATCATCACTTATCCAAGT+TGG + chr4_2:62936855-62936874 None:intergenic 40.0%
CCAACTTGGATAAGTGATGA+TGG - chr4_2:62936852-62936871 Msa0614020:intron 40.0%
!! AAGTGATGATGGTCCATATG+TGG - chr4_2:62936863-62936882 Msa0614020:intron 40.0%
ATATTTCGAGAACCATCGAG+GGG + chr4_2:62936900-62936919 None:intergenic 40.0%
CAATATTTCGAGAACCATCG+AGG + chr4_2:62936902-62936921 None:intergenic 40.0%
ATTGATGCATCCATACCAAC+TGG - chr4_2:62936918-62936937 Msa0614020:intron 40.0%
CGGTATTTATAAACGCCTTG+AGG - chr4_2:62936950-62936969 Msa0614020:intron 40.0%
TTGCTGAATTCACTCCAAAG+TGG - chr4_2:62937005-62937024 Msa0614020:intron 40.0%
CTATCAGCCTATTTCCACTT+TGG + chr4_2:62937022-62937041 None:intergenic 40.0%
GAATGAAGTCTCCTGTTGAA+CGG + chr4_2:62937124-62937143 None:intergenic 40.0%
AAAGTGCATATGTTACCACG+GGG + chr4_2:62937173-62937192 None:intergenic 40.0%
AACTTAGGGACTGTATAGGA+TGG + chr4_2:62937711-62937730 None:intergenic 40.0%
!!! CTCTCTTGTTTTGTCACTCA+GGG - chr4_2:62937745-62937764 Msa0614020:intron 40.0%
GATACTGTGAGACAAGGAAA+AGG - chr4_2:62937831-62937850 Msa0614020:intron 40.0%
!! ATCCTAAGAAGTACTCTGCA+AGG - chr4_2:62937859-62937878 Msa0614020:intron 40.0%
! TACCTTGCAGAGTACTTCTT+AGG + chr4_2:62937864-62937883 None:intergenic 40.0%
! CTCCATCGAACTTTGTTGTA+TGG - chr4_2:62937906-62937925 Msa0614020:CDS 40.0%
! CCATCGAACTTTGTTGTATG+GGG - chr4_2:62937908-62937927 Msa0614020:CDS 40.0%
! CATCGAACTTTGTTGTATGG+GGG - chr4_2:62937909-62937928 Msa0614020:CDS 40.0%
AAACCCTCTTAGTTTCATCG+TGG - chr4_2:62937977-62937996 Msa0614020:CDS 40.0%
! AGTCTTTGGTGCAGTTTAAC+TGG + chr4_2:62938056-62938075 None:intergenic 40.0%
!! TCCTCTCTTTTTAGGGAGTT+TGG - chr4_2:62938076-62938095 Msa0614020:CDS 40.0%
TCCAAACTCCCTAAAAAGAG+AGG + chr4_2:62938080-62938099 None:intergenic 40.0%
TTTAGGGAGTTTGGAAGACA+TGG - chr4_2:62938085-62938104 Msa0614020:CDS 40.0%
TTTGGAAGACATGGAAGAGT+TGG - chr4_2:62938094-62938113 Msa0614020:CDS 40.0%
TAGCATCAAACCTCATAACC+AGG + chr4_2:62938152-62938171 None:intergenic 40.0%
! AGTTTGAAGCTTTGGTCGGA+AGG + chr4_2:62935243-62935262 None:intergenic 45.0%
GTTGGAGTGAAGAAAAGGGT+TGG + chr4_2:62935281-62935300 None:intergenic 45.0%
GAGTATGTAGGTAAAGGAGG+TGG - chr4_2:62935401-62935420 Msa0614020:CDS 45.0%
GTAGGTAAAGGAGGTGGAAT+TGG - chr4_2:62935407-62935426 Msa0614020:CDS 45.0%
GGGAATCATGACAAAATCGG+TGG - chr4_2:62935697-62935716 Msa0614020:CDS 45.0%
! CGGCCTTGTAGAGTTGAATT+AGG - chr4_2:62936062-62936081 Msa0614020:intron 45.0%
CGTCACTCTACGAATTGGTT+TGG - chr4_2:62936148-62936167 Msa0614020:intron 45.0%
! GCAGATTATCTAGCTCCTCA+AGG + chr4_2:62936968-62936987 None:intergenic 45.0%
GGAAATAGGCTGATAGCTTC+TGG - chr4_2:62937026-62937045 Msa0614020:intron 45.0%
!! TCTGCATTACCTTTGGCTCT+GGG - chr4_2:62937078-62937097 Msa0614020:intron 45.0%
!! CGGGGAGGAATTTTAATGCT+TGG + chr4_2:62937155-62937174 None:intergenic 45.0%
AGCATTAAAATTCCTCCCCG+TGG - chr4_2:62937155-62937174 Msa0614020:intron 45.0%
!!! GCTCTCTTGTTTTGTCACTC+AGG - chr4_2:62937744-62937763 Msa0614020:intron 45.0%
!! TTGATTGGCCTGAAGGCTTA+AGG - chr4_2:62937799-62937818 Msa0614020:intron 45.0%
CCCCATACAACAAAGTTCGA+TGG + chr4_2:62937911-62937930 None:intergenic 45.0%
! AACTTTGTTGTATGGGGGTG+TGG - chr4_2:62937914-62937933 Msa0614020:CDS 45.0%
GCTCCACGATGAAACTAAGA+GGG + chr4_2:62937983-62938002 None:intergenic 45.0%
TGCTCCACGATGAAACTAAG+AGG + chr4_2:62937984-62938003 None:intergenic 45.0%
GAGGATCCGATGGAAAAAGT+AGG - chr4_2:62938015-62938034 Msa0614020:CDS 45.0%
TACCCACTGAGCTAAGCTCA+CGG - chr4_2:62935842-62935861 Msa0614020:intron 50.0%
GAAGACCCTTGGGGCTTAAT+TGG + chr4_2:62936239-62936258 None:intergenic 50.0%
GGATCTGTCACGACCACATA+TGG + chr4_2:62936879-62936898 None:intergenic 50.0%
GCTAGATAATCTGCCCACAG+AGG - chr4_2:62936974-62936993 Msa0614020:intron 50.0%
TAATCTGCCCACAGAGGAGA+AGG - chr4_2:62936980-62936999 Msa0614020:intron 50.0%
AGCAAAGCCTTCTCCTCTGT+GGG + chr4_2:62936990-62937009 None:intergenic 50.0%
! CTCTGCATTACCTTTGGCTC+TGG - chr4_2:62937077-62937096 Msa0614020:intron 50.0%
TTCACTCTCGACCGTTCAAC+AGG - chr4_2:62937110-62937129 Msa0614020:intron 50.0%
ACAAGACGAAGATGGTCCCT+CGG + chr4_2:62937948-62937967 None:intergenic 50.0%
AGTTTCATCGTGGAGCAAGC+TGG - chr4_2:62937987-62938006 Msa0614020:CDS 50.0%
GGTGTGTCAGGGTTCGAACT+CGG - chr4_2:62935801-62935820 Msa0614020:intron 55.0%
ACCCACTGAGCTAAGCTCAC+GGG - chr4_2:62935843-62935862 Msa0614020:intron 55.0%
CAGCAAAGCCTTCTCCTCTG+TGG + chr4_2:62936991-62937010 None:intergenic 55.0%
TGCATGTGTCCCAGAGCCAA+AGG + chr4_2:62937090-62937109 None:intergenic 55.0%
GTGCATATGTTACCACGGGG+AGG + chr4_2:62937170-62937189 None:intergenic 55.0%
TTCATCGTGGAGCAAGCTGG+TGG - chr4_2:62937990-62938009 Msa0614020:CDS 55.0%
TCATCGTGGAGCAAGCTGGT+GGG - chr4_2:62937991-62938010 Msa0614020:CDS 55.0%
CCCCGTGAGCTTAGCTCAGT+GGG + chr4_2:62935847-62935866 None:intergenic 60.0%
CCCACTGAGCTAAGCTCACG+GGG - chr4_2:62935844-62935863 Msa0614020:intron 60.0%
TCCCCGTGAGCTTAGCTCAG+TGG + chr4_2:62935848-62935867 None:intergenic 60.0%
GTCGTGACAGATCCCCTCGA+TGG - chr4_2:62936885-62936904 Msa0614020:intron 60.0%
GGGTGTGGCGATGAATCCGA+GGG - chr4_2:62937929-62937948 Msa0614020:CDS 60.0%
GGGGTGTGGCGATGAATCCG+AGG - chr4_2:62937928-62937947 Msa0614020:CDS 65.0%
GTGGAGCAAGCTGGTGGGAG+AGG - chr4_2:62937996-62938015 Msa0614020:CDS 65.0%
GCTGGTGGGAGAGGATCCGA+TGG - chr4_2:62938005-62938024 Msa0614020:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 62935149 62938336 62935149 ID=Msa0614020;Name=Msa0614020
chr4_2 mRNA 62935149 62938336 62935149 ID=Msa0614020-mRNA-1;Parent=Msa0614020;Name=Msa0614020-mRNA-1;_AED=0.03;_eAED=0.03;_QI=48|1|1|1|1|1|3|170|393
chr4_2 exon 62935149 62935719 62935149 ID=Msa0614020-mRNA-1:exon:17437;Parent=Msa0614020-mRNA-1
chr4_2 exon 62936309 62936705 62936309 ID=Msa0614020-mRNA-1:exon:17436;Parent=Msa0614020-mRNA-1
chr4_2 exon 62937905 62938336 62937905 ID=Msa0614020-mRNA-1:exon:17435;Parent=Msa0614020-mRNA-1
chr4_2 five_prime_UTR 62938289 62938336 62938289 ID=Msa0614020-mRNA-1:five_prime_utr;Parent=Msa0614020-mRNA-1
chr4_2 CDS 62937905 62938288 62937905 ID=Msa0614020-mRNA-1:cds;Parent=Msa0614020-mRNA-1
chr4_2 CDS 62936309 62936705 62936309 ID=Msa0614020-mRNA-1:cds;Parent=Msa0614020-mRNA-1
chr4_2 CDS 62935319 62935719 62935319 ID=Msa0614020-mRNA-1:cds;Parent=Msa0614020-mRNA-1
chr4_2 three_prime_UTR 62935149 62935318 62935149 ID=Msa0614020-mRNA-1:three_prime_utr;Parent=Msa0614020-mRNA-1
Gene Sequence

>Msa0614020

ATGCAGTCAGCAGCAACAACAACACCCTTCTATCAACTCATCACCTTCCGACCAAAGCTTCAAACTTTCCAACCAAAAATTCCAACCCTTTTCTTCACTCCAACAATGGCTTCAGTAACAAGAGTAAAACCACTATCAGTCTTAGGTACTTCTTCCTCATCTTCATCAACAGTAGCAAGTGATGATGGGTCTGTTACATTGATGGAGTATGTAGGTAAAGGAGGTGGAATTGGTGTGAATGATGATTTGGTGATTTTGATTGATCATATACAGTATGCTTGTAAGAGAATTGCAGCTCTTATAGCTTCTCCTTTCAATTATACCATTGATATGCCAAATAGTGGTTCTGATAGGGATGCTCCAAAGCCTCTTGATATTATATCGAATGAAATTATCTTGTCATCACTTCAAAAATCTGGAAAAGTTGCTGTCATGGCTTCTGAAGAAAATGATACACCAACTTGGATAAGTGATGATGGTCCATATGTGGTCGTGACAGATCCCCTCGATGGTTCTCGAAATATTGATGCATCCATACCAACTGGTACAATTTTCGGTATTTATAAACGCCTTGAGGAGCTAGATAATCTGCCCACAGAGGAGAAGGCTTTGCTGAATTCACTCCAAAGTGGAAATAGGCTGATAGCTTCTGGTTATGTTCTTTATTCATCTGCAACTATACTCTGCATTACCTTTGGCTCTGGGACACATGCATTCACTCTCGACCGTTCAACAGGAGACTTCATTCTGACAAATCCAAGCATTAAAATTCCTCCCCGTGGGCAAATATATTCTGTGAATGATGCAAGATATTTTGATTGGCCTGAAGGCTTAAGGAAATATATTGATACTGTGAGACAAGGAAAAGGTAGATATCCTAAGAAGTACTCTGCAAGGTATATATGCTCTCTAGTAGCTGATCTCCATCGAACTTTGTTGTATGGGGGTGTGGCGATGAATCCGAGGGACCATCTTCGTCTTGTTTATGAAGCAAACCCTCTTAGTTTCATCGTGGAGCAAGCTGGTGGGAGAGGATCCGATGGAAAAAGTAGGATTCTTTCTCTTCAACCAGTTAAACTGCACCAAAGACTTCCTCTCTTTTTAGGGAGTTTGGAAGACATGGAAGAGTTGGAAAGTTATGGAGACGTACAACAAAAAGTAAATCCTGGTTATGAGGTTTGA

Protein sequence

>Msa0614020

MQSAATTTPFYQLITFRPKLQTFQPKIPTLFFTPTMASVTRVKPLSVLGTSSSSSSTVASDDGSVTLMEYVGKGGGIGVNDDLVILIDHIQYACKRIAALIASPFNYTIDMPNSGSDRDAPKPLDIISNEIILSSLQKSGKVAVMASEENDTPTWISDDGPYVVVTDPLDGSRNIDASIPTGTIFGIYKRLEELDNLPTEEKALLNSLQSGNRLIASGYVLYSSATILCITFGSGTHAFTLDRSTGDFILTNPSIKIPPRGQIYSVNDARYFDWPEGLRKYIDTVRQGKGRYPKKYSARYICSLVADLHRTLLYGGVAMNPRDHLRLVYEANPLSFIVEQAGGRGSDGKSRILSLQPVKLHQRLPLFLGSLEDMEELESYGDVQQKVNPGYEV*