Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486070 | XP_003592692.1 | 99.365 | 315 | 0 | 1 | 1 | 315 | 1 | 313 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486070 | sp|Q94AH9|FBRL2_ARATH | 90.984 | 244 | 22 | 0 | 71 | 314 | 74 | 317 | 1.01e-166 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486070 | G7IDD7 | 99.365 | 315 | 0 | 1 | 1 | 315 | 1 | 313 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0486070 | 0.835831 | 1.334629e-56 | -8.615850e-47 |
| Msa0002790 | Msa0486070 | 0.839201 | 1.825445e-57 | -8.615850e-47 |
| Msa0044890 | Msa0486070 | 0.991533 | 3.733725e-188 | -8.615850e-47 |
| Msa0068970 | Msa0486070 | 0.989346 | 9.939667e-178 | -8.615850e-47 |
| Msa0074030 | Msa0486070 | 0.805774 | 1.134905e-49 | -8.615850e-47 |
| Msa0116670 | Msa0486070 | 0.825711 | 4.038537e-54 | -8.615850e-47 |
| Msa0129660 | Msa0486070 | 0.871104 | 8.809927e-67 | -8.615850e-47 |
| Msa0164770 | Msa0486070 | 0.841711 | 4.026063e-58 | -8.615850e-47 |
| Msa0173530 | Msa0486070 | 0.827603 | 1.428293e-54 | -8.615850e-47 |
| Msa0183090 | Msa0486070 | 0.951598 | 1.455910e-109 | -8.615850e-47 |
| Msa0186740 | Msa0486070 | 0.803757 | 2.992660e-49 | -8.615850e-47 |
| Msa0189700 | Msa0486070 | 0.800849 | 1.188024e-48 | -8.615850e-47 |
| Msa0194940 | Msa0486070 | 0.811618 | 6.398740e-51 | -8.615850e-47 |
| Msa0210330 | Msa0486070 | 0.829657 | 4.554653e-55 | -8.615850e-47 |
| Msa0210360 | Msa0486070 | 0.812023 | 5.221713e-51 | -8.615850e-47 |
| Msa0231030 | Msa0486070 | 0.813790 | 2.141131e-51 | -8.615850e-47 |
| Msa0236650 | Msa0486070 | 0.808527 | 2.964482e-50 | -8.615850e-47 |
| Msa0375310 | Msa0486070 | 0.823757 | 1.166556e-53 | -8.615850e-47 |
| Msa0421500 | Msa0486070 | 0.819558 | 1.090668e-52 | -8.615850e-47 |
| Msa0471880 | Msa0486070 | 0.824091 | 9.736532e-54 | -8.615850e-47 |
| Msa0482200 | Msa0486070 | 0.831895 | 1.287826e-55 | -8.615850e-47 |
| Msa0250820 | Msa0486070 | 0.837356 | 5.454417e-57 | -8.615850e-47 |
| Msa0250870 | Msa0486070 | 0.806677 | 7.324329e-50 | -8.615850e-47 |
| Msa0257450 | Msa0486070 | 0.835086 | 2.058430e-56 | -8.615850e-47 |
| Msa0289580 | Msa0486070 | 0.804624 | 1.975608e-49 | -8.615850e-47 |
| Msa0289610 | Msa0486070 | 0.801659 | 8.111172e-49 | -8.615850e-47 |
| Msa0296720 | Msa0486070 | 0.840587 | 7.950777e-58 | -8.615850e-47 |
| Msa0342850 | Msa0486070 | 0.869043 | 4.161303e-66 | -8.615850e-47 |
| Msa0485510 | Msa0486070 | 0.834322 | 3.205027e-56 | -8.615850e-47 |
| Msa0486070 | Msa0513990 | 0.805574 | 1.250239e-49 | -8.615850e-47 |
| Msa0486070 | Msa0544720 | 0.813221 | 2.856444e-51 | -8.615850e-47 |
| Msa0486070 | Msa0550420 | 0.830001 | 3.755084e-55 | -8.615850e-47 |
| Msa0486070 | Msa0554210 | 0.823397 | 1.415931e-53 | -8.615850e-47 |
| Msa0486070 | Msa0573140 | 0.801597 | 8.352033e-49 | -8.615850e-47 |
| Msa0486070 | Msa0608260 | 0.803851 | 2.862212e-49 | -8.615850e-47 |
| Msa0486070 | Msa0648620 | 0.803004 | 4.286375e-49 | -8.615850e-47 |
| Msa0486070 | Msa0664560 | 0.801567 | 8.471082e-49 | -8.615850e-47 |
| Msa0486070 | Msa0687440 | 0.819525 | 1.109744e-52 | -8.615850e-47 |
| Msa0486070 | Msa0691330 | 0.804857 | 1.766238e-49 | -8.615850e-47 |
| Msa0486070 | Msa0704980 | 0.827561 | 1.461273e-54 | -8.615850e-47 |
| Msa0486070 | Msa0709730 | 0.826500 | 2.622689e-54 | -8.615850e-47 |
| Msa0486070 | Msa0877540 | 0.801006 | 1.103881e-48 | -8.615850e-47 |
| Msa0486070 | Msa0930490 | 0.862715 | 4.163591e-64 | -8.615850e-47 |
| Msa0486070 | Msa1027640 | 0.808159 | 3.552221e-50 | -8.615850e-47 |
| Msa0486070 | Msa1040160 | 0.817987 | 2.479601e-52 | -8.615850e-47 |
| Msa0486070 | Msa1066190 | 0.813725 | 2.212680e-51 | -8.615850e-47 |
| Msa0486070 | Msa1078870 | 0.842874 | 1.980976e-58 | -8.615850e-47 |
| Msa0486070 | Msa1078980 | 0.827110 | 1.874371e-54 | -8.615850e-47 |
| Msa0486070 | Msa1079920 | 0.810169 | 1.317191e-50 | -8.615850e-47 |
| Msa0486070 | Msa1081340 | 0.809274 | 2.051930e-50 | -8.615850e-47 |
| Msa0486070 | Msa1088490 | 0.805711 | 1.169998e-49 | -8.615850e-47 |
| Msa0486070 | Msa1124850 | 0.810043 | 1.402126e-50 | -8.615850e-47 |
| Msa0486070 | Msa1128120 | 0.849873 | 2.445562e-60 | -8.615850e-47 |
| Msa0486070 | Msa1167540 | 0.830974 | 2.170051e-55 | -8.615850e-47 |
| Msa0486070 | Msa1167550 | 0.829421 | 5.195435e-55 | -8.615850e-47 |
| Msa0486070 | Msa1169180 | 0.830760 | 2.448920e-55 | -8.615850e-47 |
| Msa0486070 | Msa1191830 | 0.848354 | 6.467470e-60 | -8.615850e-47 |
| Msa0486070 | Msa1211820 | 0.806215 | 9.167342e-50 | -8.615850e-47 |
| Msa0486070 | Msa1215820 | 0.841513 | 4.540021e-58 | -8.615850e-47 |
| Msa0486070 | Msa1218110 | 0.884504 | 1.812646e-71 | -8.615850e-47 |
| Msa0486070 | Msa1225720 | 0.849005 | 4.268192e-60 | -8.615850e-47 |
| Msa0486070 | Msa1258390 | 0.864533 | 1.135877e-64 | -8.615850e-47 |
| Msa0486070 | Msa1299590 | 0.831423 | 1.683759e-55 | -8.615850e-47 |
| Msa0486070 | Msa1311400 | 0.800906 | 1.156780e-48 | -8.615850e-47 |
| Msa0486070 | Msa1332250 | 0.840583 | 7.968906e-58 | -8.615850e-47 |
| Msa0486070 | Msa1341130 | 0.853753 | 1.940540e-61 | -8.615850e-47 |
| Msa0486070 | Msa1364480 | 0.833594 | 4.875626e-56 | -8.615850e-47 |
| Msa0486070 | Msa1366180 | 0.817696 | 2.884481e-52 | -8.615850e-47 |
| Msa0486070 | Msa1397100 | 0.820071 | 8.323640e-53 | -8.615850e-47 |
| Msa0486070 | Msa1418690 | 0.870898 | 1.030025e-66 | -8.615850e-47 |
| Msa0486070 | Msa1418760 | 0.835258 | 1.863446e-56 | -8.615850e-47 |
| Msa0486070 | Msa1426120 | 0.844929 | 5.574506e-59 | -8.615850e-47 |
| Msa0486070 | Msa1444240 | 0.854331 | 1.321711e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486070 | MtrunA17_Chr1g0211621 | 99.365 | 315 | 0 | 1 | 1 | 315 | 1 | 313 | 0.0 | 616 |
| Msa0486070 | MtrunA17_Chr6g0468501 | 93.985 | 266 | 16 | 0 | 50 | 315 | 12 | 277 | 4.80e-173 | 480 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486070 | AT4G25630.1 | 90.984 | 244 | 22 | 0 | 71 | 314 | 74 | 317 | 1.03e-167 | 469 |
| Msa0486070 | AT5G52470.1 | 90.083 | 242 | 24 | 0 | 71 | 312 | 63 | 304 | 2.79e-165 | 462 |
| Msa0486070 | AT5G52490.1 | 71.074 | 242 | 70 | 0 | 69 | 310 | 51 | 292 | 2.49e-128 | 368 |
| Msa0486070 | AT5G52470.2 | 93.902 | 164 | 10 | 0 | 71 | 234 | 63 | 226 | 3.28e-111 | 324 |
Find 123 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAATACCCTCATGTCTA+TGG | 0.205671 | 3_4:+3858744 | None:intergenic |
| GGAGGTGGGAGAGGTGGTTT+TGG | 0.245696 | 3_4:-3858908 | Msa0486070:CDS |
| TGTCTAGCATCTTCAATAAT+TGG | 0.265009 | 3_4:+3857905 | None:intergenic |
| CTTTACCTAGGAGCTGCTTC+TGG | 0.296675 | 3_4:-3858148 | Msa0486070:CDS |
| AGTTATACAACATGCATATA+GGG | 0.304600 | 3_4:+3856045 | None:intergenic |
| TAAAATATAGTGATATGTTT+TGG | 0.324425 | 3_4:-3856103 | Msa0486070:three_prime_UTR |
| TATAACATTAGTACGCTTCT+TGG | 0.324454 | 3_4:+3857928 | None:intergenic |
| CTAAGACAGAGTATAGAATT+TGG | 0.324854 | 3_4:-3858330 | Msa0486070:CDS |
| CAGTTATACAACATGCATAT+AGG | 0.348827 | 3_4:+3856044 | None:intergenic |
| GGAGGAAGGGGTGGTGATAG+AGG | 0.351363 | 3_4:-3858938 | Msa0486070:CDS |
| TGGGCGTGACTTGGTCAATA+TGG | 0.352165 | 3_4:-3857951 | Msa0486070:CDS |
| TCAAGAGTCACTTGCTCCAT+TGG | 0.352395 | 3_4:+3856372 | None:intergenic |
| GGCCGTGGTGGTTCTGGTGG+AGG | 0.363670 | 3_4:-3858968 | Msa0486070:CDS |
| TGTACAGGCCGTGGTGGTTC+TGG | 0.364877 | 3_4:-3858974 | Msa0486070:intron |
| GGAGGCCGTGGTGGCGGAAG+AGG | 0.374341 | 3_4:-3858806 | Msa0486070:CDS |
| GGAGGTAGAGGAGGTGGGAG+AGG | 0.378171 | 3_4:-3858917 | Msa0486070:CDS |
| GATAGAGGAGGTAGAGGAGG+TGG | 0.391157 | 3_4:-3858923 | Msa0486070:CDS |
| CGGAAGAGGTGGTGGAATGA+AGG | 0.392714 | 3_4:-3858792 | Msa0486070:CDS |
| AGGGACCATGCTTGTGTTGT+TGG | 0.394797 | 3_4:-3856339 | Msa0486070:CDS |
| GTCACTAAGAATCTTGTTCC+TGG | 0.395090 | 3_4:-3858695 | Msa0486070:CDS |
| GGCAGAGGAGGACGTGGAGG+AGG | 0.399351 | 3_4:-3858824 | Msa0486070:CDS |
| TGATGTTGCTCAGCCTGATC+AGG | 0.400610 | 3_4:-3857834 | Msa0486070:intron |
| AGAGGTGGCGGTAGAGGCGG+AGG | 0.402146 | 3_4:-3858848 | Msa0486070:CDS |
| GGAGGGTTCAGAGGAGGAAG+GGG | 0.404742 | 3_4:-3858950 | Msa0486070:CDS |
| CGTGGAGGAGGCCGTGGTGG+CGG | 0.406160 | 3_4:-3858812 | Msa0486070:CDS |
| GGTAGAGGCGGAGGAGGCAG+AGG | 0.408492 | 3_4:-3858839 | Msa0486070:CDS |
| GGTGGCGGTAGAGGCGGAGG+AGG | 0.421527 | 3_4:-3858845 | Msa0486070:CDS |
| GGGTTCAGAGGAGGAAGGGG+TGG | 0.421936 | 3_4:-3858947 | Msa0486070:CDS |
| ACACTTTGTTATTTCTATCA+AGG | 0.422492 | 3_4:-3856789 | Msa0486070:intron |
| TTGGTGGTGTCGACAATATA+TGG | 0.424660 | 3_4:-3858273 | Msa0486070:CDS |
| GGAGGACGTGGAGGAGGCCG+TGG | 0.430468 | 3_4:-3858818 | Msa0486070:CDS |
| AAATTAAACCACACCTGATC+AGG | 0.438185 | 3_4:+3857821 | None:intergenic |
| GGAGGACGAGGAGGAGATAG+AGG | 0.440185 | 3_4:-3858887 | Msa0486070:CDS |
| GGAGGAGGCAGAGGAGGACG+TGG | 0.443901 | 3_4:-3858830 | Msa0486070:CDS |
| AACTGTGGAATCAATACAAT+TGG | 0.448320 | 3_4:+3856452 | None:intergenic |
| CGTGTTCTGTTACCTCGAAC+AGG | 0.448367 | 3_4:+3859153 | None:intergenic |
| GCCAACCAACATTCTGTACT+TGG | 0.454773 | 3_4:+3857877 | None:intergenic |
| CCATCGAAGTGGGCGTGACT+TGG | 0.458744 | 3_4:-3857960 | Msa0486070:CDS |
| ATAGAGGAGGTAGAGGAGGT+GGG | 0.464408 | 3_4:-3858922 | Msa0486070:CDS |
| CGTGGTGGCGGAAGAGGTGG+TGG | 0.465952 | 3_4:-3858800 | Msa0486070:CDS |
| GCTAGAGGTGGCGGTAGAGG+CGG | 0.468529 | 3_4:-3858851 | Msa0486070:CDS |
| AAGGCTAGAGGTGGCGGTAG+AGG | 0.468910 | 3_4:-3858854 | Msa0486070:CDS |
| TCTCATGTGTCTGATATTGT+TGG | 0.470006 | 3_4:-3858115 | Msa0486070:CDS |
| AGATAGAGGTACCCCTTTCA+AGG | 0.470760 | 3_4:-3858873 | Msa0486070:CDS |
| AAGTTGGCAGCTGCTGTCCT+TGG | 0.472296 | 3_4:-3858292 | Msa0486070:CDS |
| GCCGTGGTGGTTCTGGTGGA+GGG | 0.473475 | 3_4:-3858967 | Msa0486070:CDS |
| GGTAGAGGAGGTGGGAGAGG+TGG | 0.474660 | 3_4:-3858914 | Msa0486070:CDS |
| CGCCACCTCTAGCCTTGAAA+GGG | 0.477576 | 3_4:+3858861 | None:intergenic |
| GAAAATACCCTCATGTCTAT+GGG | 0.477789 | 3_4:+3858745 | None:intergenic |
| CCAAGTCACGCCCACTTCGA+TGG | 0.482871 | 3_4:+3857960 | None:intergenic |
| AGAGGCGGAGGAGGCAGAGG+AGG | 0.484426 | 3_4:-3858836 | Msa0486070:CDS |
| GGTGGTGATAGAGGAGGTAG+AGG | 0.485873 | 3_4:-3858929 | Msa0486070:CDS |
| GGCCGTGGTGGCGGAAGAGG+TGG | 0.485933 | 3_4:-3858803 | Msa0486070:CDS |
| GGAAGAGGTGGTGGAATGAA+GGG | 0.492329 | 3_4:-3858791 | Msa0486070:CDS |
| CAAGCATGGTCCCTCTCAAA+TGG | 0.492656 | 3_4:+3856348 | None:intergenic |
| GACCATGCTTGTGTTGTTGG+TGG | 0.497588 | 3_4:-3856336 | Msa0486070:CDS |
| TGAGAAGAGGGTTACCGTGC+AGG | 0.499140 | 3_4:-3858657 | Msa0486070:intron |
| ACCAACATTCTGTACTTGGC+GGG | 0.501411 | 3_4:+3857881 | None:intergenic |
| GCGCTGAATACTGCCTCAGC+TGG | 0.502016 | 3_4:+3856429 | None:intergenic |
| GCTTCATATTATCTCAAAGC+TGG | 0.503141 | 3_4:-3856815 | Msa0486070:CDS |
| GGTGATAGAGGAGGTAGAGG+AGG | 0.504276 | 3_4:-3858926 | Msa0486070:CDS |
| CAGAAGCAGCTCCTAGGTAA+AGG | 0.506248 | 3_4:+3858149 | None:intergenic |
| CTCAAAATATAGAGGCTACT+CGG | 0.506705 | 3_4:+3856284 | None:intergenic |
| CCGCCACCTCTAGCCTTGAA+AGG | 0.514108 | 3_4:+3858860 | None:intergenic |
| TTGGCAGCTGCTGTCCTTGG+TGG | 0.517332 | 3_4:-3858289 | Msa0486070:CDS |
| AGCTGATCAATTTAAGCCAA+TGG | 0.520445 | 3_4:-3856388 | Msa0486070:CDS |
| TTGTTCCAGAAGCAGCTCCT+AGG | 0.523899 | 3_4:+3858143 | None:intergenic |
| TTGATGAGAACGGCTACAAA+GGG | 0.524003 | 3_4:+3859206 | None:intergenic |
| TCATTGTAAACAGCTTCTCC+AGG | 0.524882 | 3_4:+3858677 | None:intergenic |
| AACCAACATTCTGTACTTGG+CGG | 0.526725 | 3_4:+3857880 | None:intergenic |
| GGAGGCAGAGGAGGACGTGG+AGG | 0.526880 | 3_4:-3858827 | Msa0486070:CDS |
| TGGAATGAAGGGAGGAAGCA+AGG | 0.532988 | 3_4:-3858780 | Msa0486070:CDS |
| ACAATGGCTCCTCCTGTTCG+AGG | 0.533054 | 3_4:-3859165 | Msa0486070:intron |
| TGGAGGGTTCAGAGGAGGAA+GGG | 0.537472 | 3_4:-3858951 | Msa0486070:CDS |
| GAACCCTTTCCGTTCTAAGT+TGG | 0.539930 | 3_4:-3858308 | Msa0486070:CDS |
| GTACAGAATGTTGGTTGGCA+TGG | 0.545696 | 3_4:-3857873 | Msa0486070:CDS |
| TACCATTGTGTCACCAACTT+AGG | 0.548669 | 3_4:-3856253 | Msa0486070:three_prime_UTR |
| CCTTTCAAGGCTAGAGGTGG+CGG | 0.550070 | 3_4:-3858860 | Msa0486070:CDS |
| TTTGATGAGAACGGCTACAA+AGG | 0.552434 | 3_4:+3859205 | None:intergenic |
| ACTTACGTTATATTTGCTGA+TGG | 0.553453 | 3_4:-3856153 | Msa0486070:three_prime_UTR |
| TGCGAAGAGTTTGATGAGAA+CGG | 0.554186 | 3_4:+3859196 | None:intergenic |
| TACTGCCTCAGCTGGAACTG+TGG | 0.556438 | 3_4:+3856437 | None:intergenic |
| CTGCCAACTTAGAACGGAAA+GGG | 0.557631 | 3_4:+3858305 | None:intergenic |
| AGGTAAAGGACTTTAGCGCC+AGG | 0.557851 | 3_4:+3858163 | None:intergenic |
| CAAGTCACGCCCACTTCGAT+GGG | 0.558873 | 3_4:+3857961 | None:intergenic |
| ACAGGCCGTGGTGGTTCTGG+TGG | 0.566444 | 3_4:-3858971 | Msa0486070:intron |
| GACTCTTGAACCATTTGAGA+GGG | 0.572197 | 3_4:-3856358 | Msa0486070:CDS |
| GTGGAGGGTTCAGAGGAGGA+AGG | 0.574068 | 3_4:-3858952 | Msa0486070:CDS |
| GGTTCTGGTGGAGGGTTCAG+AGG | 0.575244 | 3_4:-3858959 | Msa0486070:CDS |
| AGAGGTGGTGGAATGAAGGG+AGG | 0.576093 | 3_4:-3858788 | Msa0486070:CDS |
| GGACGTGGAGGAGGCCGTGG+TGG | 0.585474 | 3_4:-3858815 | Msa0486070:CDS |
| CAGCAGCTGCCAACTTAGAA+CGG | 0.593341 | 3_4:+3858299 | None:intergenic |
| TCTGGTGGAGGGTTCAGAGG+AGG | 0.598909 | 3_4:-3858956 | Msa0486070:CDS |
| GGAAGGGGTGGTGATAGAGG+AGG | 0.599693 | 3_4:-3858935 | Msa0486070:CDS |
| AAGCTGTTTACAATGAGAAG+AGG | 0.601232 | 3_4:-3858670 | Msa0486070:CDS |
| AGCTGTTTACAATGAGAAGA+GGG | 0.603845 | 3_4:-3858669 | Msa0486070:CDS |
| GTTGAACCCCATAGACATGA+GGG | 0.606951 | 3_4:-3858752 | Msa0486070:CDS |
| GTTATACAACATGCATATAG+GGG | 0.607535 | 3_4:+3856046 | None:intergenic |
| TGATTCCACAGTTCCAGCTG+AGG | 0.607935 | 3_4:-3856442 | Msa0486070:CDS |
| TGACTCTTGAACCATTTGAG+AGG | 0.609035 | 3_4:-3856359 | Msa0486070:CDS |
| GCATATAGGGGTTAGACTCG+TGG | 0.613422 | 3_4:+3856058 | None:intergenic |
| GCCAAGTACAGAATGTTGGT+TGG | 0.614552 | 3_4:-3857878 | Msa0486070:CDS |
| TCCCGCCAAGTACAGAATGT+TGG | 0.621000 | 3_4:-3857882 | Msa0486070:CDS |
| TGAATTTGTACAGGCCGTGG+TGG | 0.621278 | 3_4:-3858980 | Msa0486070:intron |
| TGTTGAACCCCATAGACATG+AGG | 0.622170 | 3_4:-3858753 | Msa0486070:CDS |
| TAGAATTCTCCCATCGAAGT+GGG | 0.624110 | 3_4:-3857970 | Msa0486070:CDS |
| TCATATTATCTCAAAGCTGG+AGG | 0.625407 | 3_4:-3856812 | Msa0486070:CDS |
| ACCCCTTTCAAGGCTAGAGG+TGG | 0.626063 | 3_4:-3858863 | Msa0486070:CDS |
| CTCCTAAGTTGGTGACACAA+TGG | 0.628348 | 3_4:+3856251 | None:intergenic |
| GCTGCCAACTTAGAACGGAA+AGG | 0.630241 | 3_4:+3858304 | None:intergenic |
| CACCACCTCTTCCGCCACCA+CGG | 0.647973 | 3_4:+3858801 | None:intergenic |
| AGCCACCAACAACACAAGCA+TGG | 0.648785 | 3_4:+3856334 | None:intergenic |
| TCTTCGCAATCTCTCTACAA+TGG | 0.652523 | 3_4:-3859181 | Msa0486070:exon |
| GGTACCCCTTTCAAGGCTAG+AGG | 0.653441 | 3_4:-3858866 | Msa0486070:CDS |
| AAAATACCCTCATGTCTATG+GGG | 0.663716 | 3_4:+3858746 | None:intergenic |
| GTAGAATTCTCCCATCGAAG+TGG | 0.663836 | 3_4:-3857971 | Msa0486070:CDS |
| GGCGCTAAAGTCCTTTACCT+AGG | 0.679116 | 3_4:-3858160 | Msa0486070:CDS |
| ACCCTCCACCAGAACCACCA+CGG | 0.696616 | 3_4:+3858966 | None:intergenic |
| GCCACCTCTAGCCTTGAAAG+GGG | 0.697135 | 3_4:+3858862 | None:intergenic |
| TGAGAAAGGAAATACCTGCA+CGG | 0.697697 | 3_4:+3858643 | None:intergenic |
| GTTCTGTTACCTCGAACAGG+AGG | 0.699595 | 3_4:+3859156 | None:intergenic |
| TGAGGCAGTATTCAGCGCTG+AGG | 0.706093 | 3_4:-3856424 | Msa0486070:CDS |
| ATATATTGTCGACACCACCA+AGG | 0.737399 | 3_4:+3858275 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTTAATTTTTTTTTT+TGG | - | chr3_4:3858772-3858791 | Msa0486070:CDS | 0.0% |
| !!! | TTTATTTGTTAAAATCAAAT+GGG | - | chr3_4:3856199-3856218 | Msa0486070:three_prime_UTR | 10.0% |
| !! | TGAAAATTTATAAACAAAAT+TGG | + | chr3_4:3857852-3857871 | None:intergenic | 10.0% |
| !! | GAAAATCATTAAAATAAATT+AGG | + | chr3_4:3858104-3858123 | None:intergenic | 10.0% |
| !!! | TTTTTAATTTGTTAACTTTT+TGG | - | chr3_4:3858127-3858146 | Msa0486070:CDS | 10.0% |
| !!! | CATTTGATTTTAACAAATAA+AGG | + | chr3_4:3856200-3856219 | None:intergenic | 15.0% |
| !!! | CTTTATTTGTTAAAATCAAA+TGG | - | chr3_4:3856198-3856217 | Msa0486070:three_prime_UTR | 15.0% |
| !! | TGTCAATATAATGTATTTAA+AGG | + | chr3_4:3857070-3857089 | None:intergenic | 15.0% |
| !!! | TTATATTGACATCTTAATTT+TGG | - | chr3_4:3857079-3857098 | Msa0486070:intron | 15.0% |
| !! | ATATGATGTTTATTAAATAG+TGG | - | chr3_4:3858192-3858211 | Msa0486070:intron | 15.0% |
| !! | TAATGCATAACAAAAAAATA+CGG | + | chr3_4:3858594-3858613 | None:intergenic | 15.0% |
| !!! | CAATTTTATTTTGTATTTGT+AGG | - | chr3_4:3858804-3858823 | Msa0486070:CDS | 15.0% |
| !!! | TTTTTTATCACTTGTTATTT+AGG | - | chr3_4:3859053-3859072 | Msa0486070:intron | 15.0% |
| !!! | TCACTATATTTTAGTAATTT+TGG | + | chr3_4:3859169-3859188 | None:intergenic | 15.0% |
| !!! | TAAAATATAGTGATATGTTT+TGG | - | chr3_4:3859176-3859195 | Msa0486070:exon | 15.0% |
| !! | ATGTTATTGTCTAGTAAAAT+AGG | + | chr3_4:3856765-3856784 | None:intergenic | 20.0% |
| !! | CATGTTATTCTATTTAATAG+TGG | - | chr3_4:3856883-3856902 | Msa0486070:intron | 20.0% |
| !!! | GTGTAAAATGTAAAATGTTT+TGG | - | chr3_4:3857657-3857676 | Msa0486070:intron | 20.0% |
| !! | CGAAAATTTATAAACAAAAC+AGG | + | chr3_4:3857826-3857845 | None:intergenic | 20.0% |
| !!! | TGTTTTATAATGTTAAGAAC+AGG | - | chr3_4:3858010-3858029 | Msa0486070:intron | 20.0% |
| !!! | TTTTAAAGCTTACTTTCTAT+AGG | - | chr3_4:3858552-3858571 | Msa0486070:intron | 20.0% |
| ! | AATAAACTCTAATTCGAACA+AGG | + | chr3_4:3856160-3856179 | None:intergenic | 25.0% |
| ! | AACACAAAACATACATATGT+TGG | + | chr3_4:3857234-3857253 | None:intergenic | 25.0% |
| !! | ATATGTATGTTTTGTGTTTG+AGG | - | chr3_4:3857236-3857255 | Msa0486070:intron | 25.0% |
| ! | TATAATGTTAAGAACAGGAT+TGG | - | chr3_4:3858015-3858034 | Msa0486070:intron | 25.0% |
| ! | ATAATGTTAAGAACAGGATT+GGG | - | chr3_4:3858016-3858035 | Msa0486070:intron | 25.0% |
| ! | TAAAATAAATTAGGCTCAAC+TGG | + | chr3_4:3858095-3858114 | None:intergenic | 25.0% |
| ! | TGATGTTTATTAAATAGTGG+TGG | - | chr3_4:3858195-3858214 | Msa0486070:intron | 25.0% |
| ! | TATACTATGTTGATATTTGC+AGG | - | chr3_4:3858421-3858440 | Msa0486070:intron | 25.0% |
| !!! | ACACTTTGTTATTTCTATCA+AGG | - | chr3_4:3858490-3858509 | Msa0486070:intron | 25.0% |
| !!! | AGCTTTAAAAAACAAGAAAC+TGG | + | chr3_4:3858542-3858561 | None:intergenic | 25.0% |
| ! | ACTTCAATAACAATAAACCA+TGG | - | chr3_4:3858613-3858632 | Msa0486070:intron | 25.0% |
| ! | CTTCAATAACAATAAACCAT+GGG | - | chr3_4:3858614-3858633 | Msa0486070:intron | 25.0% |
| !! | TTTTGACCTTATAACTTCAT+TGG | - | chr3_4:3858666-3858685 | Msa0486070:CDS | 25.0% |
| ! | ATCTATCCAATGAAGTTATA+AGG | + | chr3_4:3858675-3858694 | None:intergenic | 25.0% |
| !! | ATTCATTCACCATTTTACAA+AGG | + | chr3_4:3858712-3858731 | None:intergenic | 25.0% |
| !! | CATGTTTTCTCAAAATATAG+AGG | + | chr3_4:3859006-3859025 | None:intergenic | 25.0% |
| ! | GATAAAAAAAACTCCTAAGT+TGG | + | chr3_4:3859042-3859061 | None:intergenic | 25.0% |
| ! | AGTTATACAACATGCATATA+GGG | + | chr3_4:3859237-3859256 | None:intergenic | 25.0% |
| CTAAGACAGAGTATAGAATT+TGG | - | chr3_4:3856949-3856968 | Msa0486070:intron | 30.0% | |
| !! | TTGGTTTTTATCTAGAAACC+TGG | - | chr3_4:3857098-3857117 | Msa0486070:intron | 30.0% |
| ! | CAAGTTGAACTAATACTTAC+AGG | + | chr3_4:3857191-3857210 | None:intergenic | 30.0% |
| CTGTAAGTATTAGTTCAACT+TGG | - | chr3_4:3857189-3857208 | Msa0486070:intron | 30.0% | |
| TATAACATTAGTACGCTTCT+TGG | + | chr3_4:3857354-3857373 | None:intergenic | 30.0% | |
| TGTCTAGCATCTTCAATAAT+TGG | + | chr3_4:3857377-3857396 | None:intergenic | 30.0% | |
| TGCATTAGTAGAAAAGTGAA+TGG | + | chr3_4:3857541-3857560 | None:intergenic | 30.0% | |
| ! | ACTGATTTAATGTGTCTTGA+TGG | - | chr3_4:3857600-3857619 | Msa0486070:intron | 30.0% |
| !!! | TGTTTTGGTTACTACAACAT+CGG | - | chr3_4:3857672-3857691 | Msa0486070:intron | 30.0% |
| AAATATGTGCATCAGAATCT+CGG | + | chr3_4:3857752-3857771 | None:intergenic | 30.0% | |
| ! | AGATTCTGATGCACATATTT+TGG | - | chr3_4:3857752-3857771 | Msa0486070:intron | 30.0% |
| TAATGTTAAGAACAGGATTG+GGG | - | chr3_4:3858017-3858036 | Msa0486070:intron | 30.0% | |
| CAAGGATATAATGCAAGATA+CGG | + | chr3_4:3858265-3858284 | None:intergenic | 30.0% | |
| AGATTGCAAATCAACAATCA+AGG | + | chr3_4:3858283-3858302 | None:intergenic | 30.0% | |
| !! | TTGATTGTTGATTTGCAATC+TGG | - | chr3_4:3858282-3858301 | Msa0486070:CDS | 30.0% |
| TAATGTTAACCAAATAGCAG+TGG | - | chr3_4:3858362-3858381 | Msa0486070:intron | 30.0% | |
| AATGTTAACCAAATAGCAGT+GGG | - | chr3_4:3858363-3858382 | Msa0486070:intron | 30.0% | |
| ! | TATTTGCAGGCAAGAATTTT+AGG | - | chr3_4:3858434-3858453 | Msa0486070:intron | 30.0% |
| CTTACTTTCTATAGGAATCT+TGG | - | chr3_4:3858560-3858579 | Msa0486070:intron | 30.0% | |
| ! | CCATTTTACAAAGGTTTGAA+GGG | + | chr3_4:3858703-3858722 | None:intergenic | 30.0% |
| ! | ACCATTTTACAAAGGTTTGA+AGG | + | chr3_4:3858704-3858723 | None:intergenic | 30.0% |
| AACTGTGGAATCAATACAAT+TGG | + | chr3_4:3858830-3858849 | None:intergenic | 30.0% | |
| ! | ACTTACGTTATATTTGCTGA+TGG | - | chr3_4:3859126-3859145 | Msa0486070:intron | 30.0% |
| GTTATACAACATGCATATAG+GGG | + | chr3_4:3859236-3859255 | None:intergenic | 30.0% | |
| CAGTTATACAACATGCATAT+AGG | + | chr3_4:3859238-3859257 | None:intergenic | 30.0% | |
| AACTCTAATTCGAACAAGGA+TGG | + | chr3_4:3856156-3856175 | None:intergenic | 35.0% | |
| TTGTTGCGTTGAATTTGTAC+AGG | - | chr3_4:3856290-3856309 | Msa0486070:exon | 35.0% | |
| AAAATACCCTCATGTCTATG+GGG | + | chr3_4:3856536-3856555 | None:intergenic | 35.0% | |
| GAAAATACCCTCATGTCTAT+GGG | + | chr3_4:3856537-3856556 | None:intergenic | 35.0% | |
| TGAAAATACCCTCATGTCTA+TGG | + | chr3_4:3856538-3856557 | None:intergenic | 35.0% | |
| !!! | TGAGGGTATTTTCATTGCTA+AGG | - | chr3_4:3856544-3856563 | Msa0486070:intron | 35.0% |
| !!! | GAGGGTATTTTCATTGCTAA+GGG | - | chr3_4:3856545-3856564 | Msa0486070:intron | 35.0% |
| AAGCTGTTTACAATGAGAAG+AGG | - | chr3_4:3856609-3856628 | Msa0486070:intron | 35.0% | |
| AGCTGTTTACAATGAGAAGA+GGG | - | chr3_4:3856610-3856629 | Msa0486070:intron | 35.0% | |
| ATTCAAAGCACAAACATCCA+AGG | + | chr3_4:3856663-3856682 | None:intergenic | 35.0% | |
| ! | GACATATTTTCTGCAGAATG+AGG | - | chr3_4:3856920-3856939 | Msa0486070:intron | 35.0% |
| ! | TATTTTCTGCAGAATGAGGA+TGG | - | chr3_4:3856924-3856943 | Msa0486070:intron | 35.0% |
| TCTCATGTGTCTGATATTGT+TGG | - | chr3_4:3857164-3857183 | Msa0486070:intron | 35.0% | |
| CATGTTCTGTTTATGTAGAC+TGG | - | chr3_4:3857272-3857291 | Msa0486070:intron | 35.0% | |
| AAATTAAACCACACCTGATC+AGG | + | chr3_4:3857461-3857480 | None:intergenic | 35.0% | |
| ATCATCCAAGAAGTCTTGAA+GGG | + | chr3_4:3857723-3857742 | None:intergenic | 35.0% | |
| AATATGTGCATCAGAATCTC+GGG | + | chr3_4:3857751-3857770 | None:intergenic | 35.0% | |
| ATCATCCAAGAAGTCTTGAA+GGG | + | chr3_4:3857723-3857742 | None:intergenic | 35.0% | |
| ATTGATGTGCATCAGAATCT+CGG | + | chr3_4:3857964-3857983 | None:intergenic | 35.0% | |
| AATGTTAAGAACAGGATTGG+GGG | - | chr3_4:3858018-3858037 | Msa0486070:intron | 35.0% | |
| !! | TAATGACTTGTTTAGGCACA+TGG | - | chr3_4:3858044-3858063 | Msa0486070:intron | 35.0% |
| TAGGCTCAACTGGAAAAAAA+GGG | + | chr3_4:3858085-3858104 | None:intergenic | 35.0% | |
| TTAGGCTCAACTGGAAAAAA+AGG | + | chr3_4:3858086-3858105 | None:intergenic | 35.0% | |
| !! | AAAATGACTTTGAGACTGCA+AGG | + | chr3_4:3858230-3858249 | None:intergenic | 35.0% |
| !! | TGCAGTCTCAAAGTCATTTT+TGG | - | chr3_4:3858230-3858249 | Msa0486070:intron | 35.0% |
| GCTTCATATTATCTCAAAGC+TGG | - | chr3_4:3858464-3858483 | Msa0486070:intron | 35.0% | |
| TCATATTATCTCAAAGCTGG+AGG | - | chr3_4:3858467-3858486 | Msa0486070:intron | 35.0% | |
| CAATAAACCATGGGAAAATG+AGG | - | chr3_4:3858623-3858642 | Msa0486070:intron | 35.0% | |
| ! | ATACTAACCTCATTTTCCCA+TGG | + | chr3_4:3858633-3858652 | None:intergenic | 35.0% |
| TGGGAAAATGAGGTTAGTAT+TGG | - | chr3_4:3858633-3858652 | Msa0486070:intron | 35.0% | |
| CCCTTCAAACCTTTGTAAAA+TGG | - | chr3_4:3858700-3858719 | Msa0486070:CDS | 35.0% | |
| AGCTGATCAATTTAAGCCAA+TGG | - | chr3_4:3858891-3858910 | Msa0486070:CDS | 35.0% | |
| !!! | TCGGCATCTTTTTTCTTCTT+GGG | + | chr3_4:3858979-3858998 | None:intergenic | 35.0% |
| CTCAAAATATAGAGGCTACT+CGG | + | chr3_4:3858998-3859017 | None:intergenic | 35.0% | |
| TTGATGAGAACGGCTACAAA+GGG | + | chr3_4:3856076-3856095 | None:intergenic | 40.0% | |
| TTTGATGAGAACGGCTACAA+AGG | + | chr3_4:3856077-3856096 | None:intergenic | 40.0% | |
| TGCGAAGAGTTTGATGAGAA+CGG | + | chr3_4:3856086-3856105 | None:intergenic | 40.0% | |
| TCTTCGCAATCTCTCTACAA+TGG | - | chr3_4:3856098-3856117 | Msa0486070:three_prime_UTR | 40.0% | |
| GTCACTAAGAATCTTGTTCC+TGG | - | chr3_4:3856584-3856603 | Msa0486070:intron | 40.0% | |
| TCATTGTAAACAGCTTCTCC+AGG | + | chr3_4:3856605-3856624 | None:intergenic | 40.0% | |
| TGAGAAAGGAAATACCTGCA+CGG | + | chr3_4:3856639-3856658 | None:intergenic | 40.0% | |
| GGTATTTCCTTTCTCATCCT+TGG | - | chr3_4:3856643-3856662 | Msa0486070:intron | 40.0% | |
| CAAACATCCAAGGATGAGAA+AGG | + | chr3_4:3856653-3856672 | None:intergenic | 40.0% | |
| ATATATTGTCGACACCACCA+AGG | + | chr3_4:3857007-3857026 | None:intergenic | 40.0% | |
| !! | TTGGTGGTGTCGACAATATA+TGG | - | chr3_4:3857006-3857025 | Msa0486070:intron | 40.0% |
| TAGAATTCTCCCATCGAAGT+GGG | - | chr3_4:3857309-3857328 | Msa0486070:intron | 40.0% | |
| AACCAACATTCTGTACTTGG+CGG | + | chr3_4:3857402-3857421 | None:intergenic | 40.0% | |
| TCATCCAAGAAGTCTTGAAG+GGG | + | chr3_4:3857722-3857741 | None:intergenic | 40.0% | |
| CATCATCCAAGAAGTCTTGA+AGG | + | chr3_4:3857724-3857743 | None:intergenic | 40.0% | |
| AGTGCATGTGATGAGTTACT+CGG | - | chr3_4:3857905-3857924 | Msa0486070:CDS | 40.0% | |
| TCATCCAAGAAGTCTTGAAG+GGG | + | chr3_4:3857722-3857741 | None:intergenic | 40.0% | |
| CATCATCCAAGAAGTCTTGA+AGG | + | chr3_4:3857724-3857743 | None:intergenic | 40.0% | |
| TTGATGTGCATCAGAATCTC+GGG | + | chr3_4:3857963-3857982 | None:intergenic | 40.0% | |
| ACACTGACACGTAGAATACA+TGG | + | chr3_4:3858397-3858416 | None:intergenic | 40.0% | |
| TGTCAATGTTGATGCTTGCT+TGG | - | chr3_4:3858735-3858754 | Msa0486070:CDS | 40.0% | |
| TGACTCTTGAACCATTTGAG+AGG | - | chr3_4:3858920-3858939 | Msa0486070:CDS | 40.0% | |
| GACTCTTGAACCATTTGAGA+GGG | - | chr3_4:3858921-3858940 | Msa0486070:CDS | 40.0% | |
| !!! | CTCGGCATCTTTTTTCTTCT+TGG | + | chr3_4:3858980-3858999 | None:intergenic | 40.0% |
| TACCATTGTGTCACCAACTT+AGG | - | chr3_4:3859026-3859045 | Msa0486070:intron | 40.0% | |
| !! | AGATAGAGGTACCCCTTTCA+AGG | - | chr3_4:3856406-3856425 | Msa0486070:CDS | 45.0% |
| TGTTGAACCCCATAGACATG+AGG | - | chr3_4:3856526-3856545 | Msa0486070:intron | 45.0% | |
| GTTGAACCCCATAGACATGA+GGG | - | chr3_4:3856527-3856546 | Msa0486070:intron | 45.0% | |
| ! | GAACCCTTTCCGTTCTAAGT+TGG | - | chr3_4:3856971-3856990 | Msa0486070:intron | 45.0% |
| CTGCCAACTTAGAACGGAAA+GGG | + | chr3_4:3856977-3856996 | None:intergenic | 45.0% | |
| GTAGAATTCTCCCATCGAAG+TGG | - | chr3_4:3857308-3857327 | Msa0486070:intron | 45.0% | |
| ACCAACATTCTGTACTTGGC+GGG | + | chr3_4:3857401-3857420 | None:intergenic | 45.0% | |
| GCCAAGTACAGAATGTTGGT+TGG | - | chr3_4:3857401-3857420 | Msa0486070:intron | 45.0% | |
| GCCAACCAACATTCTGTACT+TGG | + | chr3_4:3857405-3857424 | None:intergenic | 45.0% | |
| ! | GTACAGAATGTTGGTTGGCA+TGG | - | chr3_4:3857406-3857425 | Msa0486070:intron | 45.0% |
| GGTGCATGTGATGAGTTACT+CGG | - | chr3_4:3857693-3857712 | Msa0486070:intron | 45.0% | |
| GATTCCCCTTCAAGACTTCT+TGG | - | chr3_4:3857715-3857734 | Msa0486070:intron | 45.0% | |
| GATTCCCCTTCAAGACTTCT+TGG | - | chr3_4:3857715-3857734 | Msa0486070:intron | 45.0% | |
| !! | GGGGCAGTAATGACTTGTTT+AGG | - | chr3_4:3858037-3858056 | Msa0486070:intron | 45.0% |
| AGATTCGTCCCACTGCTATT+TGG | + | chr3_4:3858374-3858393 | None:intergenic | 45.0% | |
| TCAAGAGTCACTTGCTCCAT+TGG | + | chr3_4:3858910-3858929 | None:intergenic | 45.0% | |
| !! | CTCCTAAGTTGGTGACACAA+TGG | + | chr3_4:3859031-3859050 | None:intergenic | 45.0% |
| GTTCTGTTACCTCGAACAGG+AGG | + | chr3_4:3856126-3856145 | None:intergenic | 50.0% | |
| CGTGTTCTGTTACCTCGAAC+AGG | + | chr3_4:3856129-3856148 | None:intergenic | 50.0% | |
| CGTTGAATTTGTACAGGCCG+TGG | - | chr3_4:3856296-3856315 | Msa0486070:exon | 50.0% | |
| TGAATTTGTACAGGCCGTGG+TGG | - | chr3_4:3856299-3856318 | Msa0486070:CDS | 50.0% | |
| ATAGAGGAGGTAGAGGAGGT+GGG | - | chr3_4:3856357-3856376 | Msa0486070:CDS | 50.0% | |
| !! | GGAAGAGGTGGTGGAATGAA+GGG | - | chr3_4:3856488-3856507 | Msa0486070:intron | 50.0% |
| TGGAATGAAGGGAGGAAGCA+AGG | - | chr3_4:3856499-3856518 | Msa0486070:intron | 50.0% | |
| GCTGCCAACTTAGAACGGAA+AGG | + | chr3_4:3856978-3856997 | None:intergenic | 50.0% | |
| CAGCAGCTGCCAACTTAGAA+CGG | + | chr3_4:3856983-3857002 | None:intergenic | 50.0% | |
| AGGTAAAGGACTTTAGCGCC+AGG | + | chr3_4:3857119-3857138 | None:intergenic | 50.0% | |
| GGCGCTAAAGTCCTTTACCT+AGG | - | chr3_4:3857119-3857138 | Msa0486070:intron | 50.0% | |
| CAGAAGCAGCTCCTAGGTAA+AGG | + | chr3_4:3857133-3857152 | None:intergenic | 50.0% | |
| CTTTACCTAGGAGCTGCTTC+TGG | - | chr3_4:3857131-3857150 | Msa0486070:intron | 50.0% | |
| TTGTTCCAGAAGCAGCTCCT+AGG | + | chr3_4:3857139-3857158 | None:intergenic | 50.0% | |
| !! | TGGGCGTGACTTGGTCAATA+TGG | - | chr3_4:3857328-3857347 | Msa0486070:intron | 50.0% |
| TCCCGCCAAGTACAGAATGT+TGG | - | chr3_4:3857397-3857416 | Msa0486070:intron | 50.0% | |
| TGATGTTGCTCAGCCTGATC+AGG | - | chr3_4:3857445-3857464 | Msa0486070:intron | 50.0% | |
| TGATTCCACAGTTCCAGCTG+AGG | - | chr3_4:3858837-3858856 | Msa0486070:CDS | 50.0% | |
| CAAGCATGGTCCCTCTCAAA+TGG | + | chr3_4:3858934-3858953 | None:intergenic | 50.0% | |
| AGGGACCATGCTTGTGTTGT+TGG | - | chr3_4:3858940-3858959 | Msa0486070:CDS | 50.0% | |
| ! | GACCATGCTTGTGTTGTTGG+TGG | - | chr3_4:3858943-3858962 | Msa0486070:CDS | 50.0% |
| AGCCACCAACAACACAAGCA+TGG | + | chr3_4:3858948-3858967 | None:intergenic | 50.0% | |
| GCATATAGGGGTTAGACTCG+TGG | + | chr3_4:3859224-3859243 | None:intergenic | 50.0% | |
| ACAATGGCTCCTCCTGTTCG+AGG | - | chr3_4:3856114-3856133 | Msa0486070:three_prime_UTR | 55.0% | |
| TGGAGGGTTCAGAGGAGGAA+GGG | - | chr3_4:3856328-3856347 | Msa0486070:CDS | 55.0% | |
| GGTGGTGATAGAGGAGGTAG+AGG | - | chr3_4:3856350-3856369 | Msa0486070:CDS | 55.0% | |
| GGTGATAGAGGAGGTAGAGG+AGG | - | chr3_4:3856353-3856372 | Msa0486070:CDS | 55.0% | |
| GATAGAGGAGGTAGAGGAGG+TGG | - | chr3_4:3856356-3856375 | Msa0486070:CDS | 55.0% | |
| !!! | AGAGGTGGTTTTGGAGGACG+AGG | - | chr3_4:3856380-3856399 | Msa0486070:CDS | 55.0% |
| GGTACCCCTTTCAAGGCTAG+AGG | - | chr3_4:3856413-3856432 | Msa0486070:CDS | 55.0% | |
| ACCCCTTTCAAGGCTAGAGG+TGG | - | chr3_4:3856416-3856435 | Msa0486070:CDS | 55.0% | |
| !! | GCCACCTCTAGCCTTGAAAG+GGG | + | chr3_4:3856420-3856439 | None:intergenic | 55.0% |
| !! | CGCCACCTCTAGCCTTGAAA+GGG | + | chr3_4:3856421-3856440 | None:intergenic | 55.0% |
| CCTTTCAAGGCTAGAGGTGG+CGG | - | chr3_4:3856419-3856438 | Msa0486070:CDS | 55.0% | |
| !! | CGGAAGAGGTGGTGGAATGA+AGG | - | chr3_4:3856487-3856506 | Msa0486070:intron | 55.0% |
| !! | AGAGGTGGTGGAATGAAGGG+AGG | - | chr3_4:3856491-3856510 | Msa0486070:intron | 55.0% |
| TGAGAAGAGGGTTACCGTGC+AGG | - | chr3_4:3856622-3856641 | Msa0486070:intron | 55.0% | |
| AAGTTGGCAGCTGCTGTCCT+TGG | - | chr3_4:3856987-3857006 | Msa0486070:intron | 55.0% | |
| CAAGTCACGCCCACTTCGAT+GGG | + | chr3_4:3857321-3857340 | None:intergenic | 55.0% | |
| TTGCTCAGCCTGATCAGGTG+TGG | - | chr3_4:3857450-3857469 | Msa0486070:intron | 55.0% | |
| TACTGCCTCAGCTGGAACTG+TGG | + | chr3_4:3858845-3858864 | None:intergenic | 55.0% | |
| TGAGGCAGTATTCAGCGCTG+AGG | - | chr3_4:3858855-3858874 | Msa0486070:CDS | 55.0% | |
| TGTACAGGCCGTGGTGGTTC+TGG | - | chr3_4:3856305-3856324 | Msa0486070:CDS | 60.0% | |
| ACCCTCCACCAGAACCACCA+CGG | + | chr3_4:3856316-3856335 | None:intergenic | 60.0% | |
| ! | GGTTCTGGTGGAGGGTTCAG+AGG | - | chr3_4:3856320-3856339 | Msa0486070:CDS | 60.0% |
| TCTGGTGGAGGGTTCAGAGG+AGG | - | chr3_4:3856323-3856342 | Msa0486070:CDS | 60.0% | |
| GTGGAGGGTTCAGAGGAGGA+AGG | - | chr3_4:3856327-3856346 | Msa0486070:CDS | 60.0% | |
| GGAGGGTTCAGAGGAGGAAG+GGG | - | chr3_4:3856329-3856348 | Msa0486070:CDS | 60.0% | |
| GGAGGAAGGGGTGGTGATAG+AGG | - | chr3_4:3856341-3856360 | Msa0486070:CDS | 60.0% | |
| GGAAGGGGTGGTGATAGAGG+AGG | - | chr3_4:3856344-3856363 | Msa0486070:CDS | 60.0% | |
| ! | GGAGGTGGGAGAGGTGGTTT+TGG | - | chr3_4:3856371-3856390 | Msa0486070:CDS | 60.0% |
| !!! | GGTGGGAGAGGTGGTTTTGG+AGG | - | chr3_4:3856374-3856393 | Msa0486070:CDS | 60.0% |
| !!! | GGTGGTTTTGGAGGACGAGG+AGG | - | chr3_4:3856383-3856402 | Msa0486070:CDS | 60.0% |
| GGAGGACGAGGAGGAGATAG+AGG | - | chr3_4:3856392-3856411 | Msa0486070:CDS | 60.0% | |
| !! | CCGCCACCTCTAGCCTTGAA+AGG | + | chr3_4:3856422-3856441 | None:intergenic | 60.0% |
| ! | AAGGCTAGAGGTGGCGGTAG+AGG | - | chr3_4:3856425-3856444 | Msa0486070:CDS | 60.0% |
| TTGGCAGCTGCTGTCCTTGG+TGG | - | chr3_4:3856990-3857009 | Msa0486070:intron | 60.0% | |
| CCAAGTCACGCCCACTTCGA+TGG | + | chr3_4:3857322-3857341 | None:intergenic | 60.0% | |
| CCATCGAAGTGGGCGTGACT+TGG | - | chr3_4:3857319-3857338 | Msa0486070:intron | 60.0% | |
| GCGCTGAATACTGCCTCAGC+TGG | + | chr3_4:3858853-3858872 | None:intergenic | 60.0% | |
| !! | ACAGGCCGTGGTGGTTCTGG+TGG | - | chr3_4:3856308-3856327 | Msa0486070:CDS | 65.0% |
| !! | GCCGTGGTGGTTCTGGTGGA+GGG | - | chr3_4:3856312-3856331 | Msa0486070:CDS | 65.0% |
| GGGTTCAGAGGAGGAAGGGG+TGG | - | chr3_4:3856332-3856351 | Msa0486070:CDS | 65.0% | |
| GGAGGTAGAGGAGGTGGGAG+AGG | - | chr3_4:3856362-3856381 | Msa0486070:CDS | 65.0% | |
| GGTAGAGGAGGTGGGAGAGG+TGG | - | chr3_4:3856365-3856384 | Msa0486070:CDS | 65.0% | |
| ! | GCTAGAGGTGGCGGTAGAGG+CGG | - | chr3_4:3856428-3856447 | Msa0486070:CDS | 65.0% |
| CACCACCTCTTCCGCCACCA+CGG | + | chr3_4:3856481-3856500 | None:intergenic | 65.0% | |
| !! | GGCCGTGGTGGTTCTGGTGG+AGG | - | chr3_4:3856311-3856330 | Msa0486070:CDS | 70.0% |
| ! | AGAGGTGGCGGTAGAGGCGG+AGG | - | chr3_4:3856431-3856450 | Msa0486070:CDS | 70.0% |
| GGTAGAGGCGGAGGAGGCAG+AGG | - | chr3_4:3856440-3856459 | Msa0486070:CDS | 70.0% | |
| AGAGGCGGAGGAGGCAGAGG+AGG | - | chr3_4:3856443-3856462 | Msa0486070:CDS | 70.0% | |
| GGAGGAGGCAGAGGAGGACG+TGG | - | chr3_4:3856449-3856468 | Msa0486070:CDS | 70.0% | |
| GGAGGCAGAGGAGGACGTGG+AGG | - | chr3_4:3856452-3856471 | Msa0486070:CDS | 70.0% | |
| GGCAGAGGAGGACGTGGAGG+AGG | - | chr3_4:3856455-3856474 | Msa0486070:CDS | 70.0% | |
| !! | CGTGGTGGCGGAAGAGGTGG+TGG | - | chr3_4:3856479-3856498 | Msa0486070:intron | 70.0% |
| ! | GGTGGCGGTAGAGGCGGAGG+AGG | - | chr3_4:3856434-3856453 | Msa0486070:CDS | 75.0% |
| GGAGGACGTGGAGGAGGCCG+TGG | - | chr3_4:3856461-3856480 | Msa0486070:intron | 75.0% | |
| GGACGTGGAGGAGGCCGTGG+TGG | - | chr3_4:3856464-3856483 | Msa0486070:intron | 75.0% | |
| CGTGGAGGAGGCCGTGGTGG+CGG | - | chr3_4:3856467-3856486 | Msa0486070:intron | 75.0% | |
| !! | GGAGGCCGTGGTGGCGGAAG+AGG | - | chr3_4:3856473-3856492 | Msa0486070:intron | 75.0% |
| !! | GGCCGTGGTGGCGGAAGAGG+TGG | - | chr3_4:3856476-3856495 | Msa0486070:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 3856036 | 3859265 | 3856036 | ID=Msa0486070;Name=Msa0486070 |
| chr3_4 | mRNA | 3856036 | 3859265 | 3856036 | ID=Msa0486070-mRNA-1;Parent=Msa0486070;Name=Msa0486070-mRNA-1;_AED=0.08;_eAED=0.08;_QI=81|1|1|1|1|1|7|263|315 |
| chr3_4 | exon | 3856036 | 3856475 | 3856036 | ID=Msa0486070-mRNA-1:exon:1458;Parent=Msa0486070-mRNA-1 |
| chr3_4 | exon | 3856790 | 3856858 | 3856790 | ID=Msa0486070-mRNA-1:exon:1457;Parent=Msa0486070-mRNA-1 |
| chr3_4 | exon | 3857835 | 3858011 | 3857835 | ID=Msa0486070-mRNA-1:exon:1456;Parent=Msa0486070-mRNA-1 |
| chr3_4 | exon | 3858111 | 3858188 | 3858111 | ID=Msa0486070-mRNA-1:exon:1455;Parent=Msa0486070-mRNA-1 |
| chr3_4 | exon | 3858270 | 3858365 | 3858270 | ID=Msa0486070-mRNA-1:exon:1454;Parent=Msa0486070-mRNA-1 |
| chr3_4 | exon | 3858658 | 3858989 | 3858658 | ID=Msa0486070-mRNA-1:exon:1453;Parent=Msa0486070-mRNA-1 |
| chr3_4 | exon | 3859166 | 3859265 | 3859166 | ID=Msa0486070-mRNA-1:exon:1452;Parent=Msa0486070-mRNA-1 |
| chr3_4 | five_prime_UTR | 3859185 | 3859265 | 3859185 | ID=Msa0486070-mRNA-1:five_prime_utr;Parent=Msa0486070-mRNA-1 |
| chr3_4 | CDS | 3859166 | 3859184 | 3859166 | ID=Msa0486070-mRNA-1:cds;Parent=Msa0486070-mRNA-1 |
| chr3_4 | CDS | 3858658 | 3858989 | 3858658 | ID=Msa0486070-mRNA-1:cds;Parent=Msa0486070-mRNA-1 |
| chr3_4 | CDS | 3858270 | 3858365 | 3858270 | ID=Msa0486070-mRNA-1:cds;Parent=Msa0486070-mRNA-1 |
| chr3_4 | CDS | 3858111 | 3858188 | 3858111 | ID=Msa0486070-mRNA-1:cds;Parent=Msa0486070-mRNA-1 |
| chr3_4 | CDS | 3857835 | 3858011 | 3857835 | ID=Msa0486070-mRNA-1:cds;Parent=Msa0486070-mRNA-1 |
| chr3_4 | CDS | 3856790 | 3856858 | 3856790 | ID=Msa0486070-mRNA-1:cds;Parent=Msa0486070-mRNA-1 |
| chr3_4 | CDS | 3856299 | 3856475 | 3856299 | ID=Msa0486070-mRNA-1:cds;Parent=Msa0486070-mRNA-1 |
| chr3_4 | three_prime_UTR | 3856036 | 3856298 | 3856036 | ID=Msa0486070-mRNA-1:three_prime_utr;Parent=Msa0486070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
