AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0242730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242730 MtrunA17_Chr2g0295091 96.815 157 5 0 1 157 1 157 2.52e-107 302
Msa0242730 MtrunA17_Chr2g0295141 95.541 157 7 0 1 157 1 157 6.33e-107 301
Msa0242730 MtrunA17_Chr2g0295104 91.720 157 13 0 1 157 1 157 9.48e-102 288
Msa0242730 MtrunA17_Chr2g0295124 89.809 157 16 0 1 157 1 157 1.07e-98 281
Msa0242730 MtrunA17_Chr6g0462311 66.242 157 53 0 1 157 1 157 2.21e-70 209
Msa0242730 MtrunA17_Chr4g0067951 66.242 157 53 0 1 157 1 157 7.13e-70 208
Msa0242730 MtrunA17_Chr2g0295021 63.694 157 57 0 1 157 1 157 7.49e-68 202
Msa0242730 MtrunA17_Chr2g0295001 63.694 157 57 0 1 157 1 157 7.49e-68 202
Msa0242730 MtrunA17_Chr2g0295064 63.694 157 57 0 1 157 68 224 3.36e-66 201
Msa0242730 MtrunA17_Chr2g0295051 61.783 157 60 0 1 157 1 157 1.29e-65 197
Msa0242730 MtrunA17_Chr2g0295041 59.236 157 64 0 1 157 1 157 2.48e-62 189
Msa0242730 MtrunA17_Chr6g0462291 64.286 140 50 0 1 140 1 140 2.19e-59 181
Msa0242730 MtrunA17_Chr2g0295081 49.045 157 80 0 1 157 1 157 7.52e-50 157
Msa0242730 MtrunA17_Chr4g0067921 42.857 161 85 5 1 157 1 158 2.84e-32 112
Msa0242730 MtrunA17_Chr2g0295211 32.051 156 105 1 1 155 1 156 6.49e-30 106
Msa0242730 MtrunA17_Chr4g0067841 33.758 157 103 1 1 156 1 157 1.08e-29 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 65 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTATTGAGGACTTTAATT+TGG 0.098681 2_2:+19086838 Msa0242730:three_prime_UTR
GGTTTAATTGGCTAGTAATT+AGG 0.164037 2_2:-19086817 None:intergenic
GTGAGGTTTGAGTGCTATTT+TGG 0.186747 2_2:+19086971 Msa0242730:three_prime_UTR
AGTCCTCAATAGGGTTTAAT+TGG 0.205101 2_2:-19086829 None:intergenic
GTTTAATTGGCTAGTAATTA+GGG 0.278519 2_2:-19086816 None:intergenic
GGATAGCTTCTTAATAGTTC+CGG 0.311830 2_2:-19085931 None:intergenic
TACAGCTTAGTGGGAGGAAC+AGG 0.324066 2_2:+19086601 Msa0242730:CDS
CCTATTGAGGACTTTAATTT+GGG 0.325571 2_2:+19086839 Msa0242730:three_prime_UTR
CTTGATAAGTCCAGTTCCTT+TGG 0.329858 2_2:-19086767 None:intergenic
TACATGTGTGTTGGCTTTGT+TGG 0.344945 2_2:+19086943 Msa0242730:three_prime_UTR
TTCAACAATTTCAACACTTT+GGG 0.350751 2_2:-19085895 None:intergenic
CCCAAATTAAAGTCCTCAAT+AGG 0.362125 2_2:-19086839 None:intergenic
CTTCAACAATTTCAACACTT+TGG 0.364915 2_2:-19085896 None:intergenic
TGAGTATACATCAAGGTCTT+TGG 0.372404 2_2:+19086916 Msa0242730:three_prime_UTR
TGGGCAGCAGAAATCACCTT+TGG 0.387864 2_2:-19085876 None:intergenic
AGATAGAGTTGCATCACCTT+TGG 0.394288 2_2:-19086719 None:intergenic
GATAGCTTCTTAATAGTTCC+GGG 0.397748 2_2:-19085930 None:intergenic
GTTGAAATTGTTGAAGGAAA+TGG 0.402462 2_2:+19085903 Msa0242730:CDS
CCTATGTTGTGTTGGTGATA+AGG 0.406752 2_2:+19087011 Msa0242730:three_prime_UTR
CCAAATTAAAGTCCTCAATA+GGG 0.411845 2_2:-19086838 None:intergenic
GAGACTAAGGCCAAAGGAAC+TGG 0.415366 2_2:+19086757 Msa0242730:CDS
TTATCTTGATATATATATCA+TGG 0.416963 2_2:+19085764 Msa0242730:exon
AGAGCCTTGTAGAGTTTAGC+TGG 0.426244 2_2:-19085828 None:intergenic
GGGCAGCAGAAATCACCTTT+GGG 0.449440 2_2:-19085875 None:intergenic
TCAGTGGATGAGGCAAACTT+TGG 0.464386 2_2:+19086571 Msa0242730:CDS
TGCTAAAACGTAGCCCTCAA+TGG 0.474394 2_2:-19086791 None:intergenic
TGGATATAACTACAGCTTAG+TGG 0.476164 2_2:+19086591 Msa0242730:CDS
AAAATTGTTGCTGGCTCTGA+TGG 0.476544 2_2:+19086661 Msa0242730:CDS
TTTGGCTCGTACATGTGTGT+TGG 0.491488 2_2:+19086934 Msa0242730:three_prime_UTR
ATTAAATTAAATTAAAATGA+CGG 0.493877 2_2:-19087089 None:intergenic
CAAAGTGTTGAAATTGTTGA+AGG 0.502542 2_2:+19085897 Msa0242730:CDS
CAAATTAGATTCAGTGGATG+AGG 0.505903 2_2:+19086561 Msa0242730:CDS
GGATATAACTACAGCTTAGT+GGG 0.506709 2_2:+19086592 Msa0242730:CDS
ATCTGAATTACCTTCAACAA+TGG 0.509250 2_2:-19085952 None:intergenic
TAATTTGTGTAGCACAAAGT+TGG 0.512097 2_2:-19086545 None:intergenic
CCTTATCACCAACACAACAT+AGG 0.514089 2_2:-19087011 None:intergenic
GGACTTATCAAGGCCATTGA+GGG 0.514208 2_2:+19086778 Msa0242730:CDS
TATTTATTGCATAATACAGA+TGG 0.515188 2_2:-19087041 None:intergenic
CAAAGGAACTGGACTTATCA+AGG 0.516806 2_2:+19086768 Msa0242730:CDS
AAGAAGCTATCCATTGTTGA+AGG 0.523757 2_2:+19085942 Msa0242730:CDS
AGCAGTACGTGAGGAGACTA+AGG 0.536209 2_2:+19086744 Msa0242730:CDS
GAGTTGCATCACCTTTGGTA+TGG 0.537356 2_2:-19086714 None:intergenic
TAGCCAATTAAACCCTATTG+AGG 0.542857 2_2:+19086826 Msa0242730:exon
AATAATTAAAGTTTATGATG+CGG 0.546841 2_2:+19086882 Msa0242730:three_prime_UTR
GGCTCCAGCTAAACTCTACA+AGG 0.556705 2_2:+19085824 Msa0242730:CDS
TATCTTGATATATATATCAT+GGG 0.556982 2_2:+19085765 Msa0242730:exon
GCTACACAAATTAGATTCAG+TGG 0.559555 2_2:+19086555 Msa0242730:CDS
TTTCACTGAAATCTTAACAA+TGG 0.567421 2_2:-19086689 None:intergenic
ATTGTTGCTGGCTCTGATGG+TGG 0.570543 2_2:+19086664 Msa0242730:CDS
TGGCTTTGTTGGATGTTGTG+AGG 0.571354 2_2:+19086954 Msa0242730:three_prime_UTR
TGGACTTATCAAGGCCATTG+AGG 0.572485 2_2:+19086777 Msa0242730:CDS
GTTGAAGGAAATGGAGGACC+CGG 0.599694 2_2:+19085912 Msa0242730:CDS
GTAGAGTTTAGCTGGAGCCA+CGG 0.602676 2_2:-19085820 None:intergenic
TGCTGATGAAATCGTCCCAA+AGG 0.606260 2_2:+19085860 Msa0242730:CDS
CTTAGTGGGAGGAACAGGGT+TGG 0.609437 2_2:+19086606 Msa0242730:CDS
ATATGCAAGAAGTAAATGAA+AGG 0.619747 2_2:-19085732 None:intergenic
GAAATTGTTGAAGGAAATGG+AGG 0.626795 2_2:+19085906 Msa0242730:CDS
TCAGTGAAATACCATACCAA+AGG 0.652605 2_2:+19086703 Msa0242730:CDS
CGTGAGGAGACTAAGGCCAA+AGG 0.670663 2_2:+19086751 Msa0242730:CDS
ATATATATATCAAGATAACA+AGG 0.672343 2_2:-19085759 None:intergenic
TCTATCTGAAGCAGTACGTG+AGG 0.676642 2_2:+19086735 Msa0242730:CDS
AGTGTGTTGAGTATACATCA+AGG 0.679518 2_2:+19086909 Msa0242730:three_prime_UTR
ACAGCTTAGTGGGAGGAACA+GGG 0.680453 2_2:+19086602 Msa0242730:CDS
TATAACTACAGCTTAGTGGG+AGG 0.697586 2_2:+19086595 Msa0242730:CDS
TGATGAACATGTCTCAACCG+TGG 0.717160 2_2:+19085803 Msa0242730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATATAAATAATTATAA+TGG + chr2_2:19086502-19086521 Msa0242730:intron 0.0%
!! AATTATATAAATAATTATAA+TGG + chr2_2:19086502-19086521 Msa0242730:intron 0.0%
!!! TTTGTCAATTTTTAAATAAA+AGG - chr2_2:19086097-19086116 None:intergenic 10.0%
!!! AAATAAAAGTATAACATAAA+TGG - chr2_2:19086307-19086326 None:intergenic 10.0%
!!! TTTGTCAATTTTTAAATAAA+AGG - chr2_2:19086097-19086116 None:intergenic 10.0%
!!! AAATAAAAGTATAACATAAA+TGG - chr2_2:19086307-19086326 None:intergenic 10.0%
!! ATATATATATCAAGATAACA+AGG - chr2_2:19085762-19085781 None:intergenic 15.0%
!! TTATCTTGATATATATATCA+TGG + chr2_2:19085764-19085783 Msa0242730:exon 15.0%
!! TATCTTGATATATATATCAT+GGG + chr2_2:19085765-19085784 Msa0242730:exon 15.0%
!!! TAATTTTATACCCAAAAAAA+AGG + chr2_2:19086220-19086239 Msa0242730:intron 15.0%
!!! AATTTAACTTCCTTTTTTTT+GGG - chr2_2:19086233-19086252 None:intergenic 15.0%
!! AATAATTAAAGTTTATGATG+CGG + chr2_2:19086882-19086901 Msa0242730:three_prime_UTR 15.0%
!! ATATATATATCAAGATAACA+AGG - chr2_2:19085762-19085781 None:intergenic 15.0%
!! TTATCTTGATATATATATCA+TGG + chr2_2:19085764-19085783 Msa0242730:exon 15.0%
!! TATCTTGATATATATATCAT+GGG + chr2_2:19085765-19085784 Msa0242730:exon 15.0%
!!! TAATTTTATACCCAAAAAAA+AGG + chr2_2:19086220-19086239 Msa0242730:intron 15.0%
!!! AATTTAACTTCCTTTTTTTT+GGG - chr2_2:19086233-19086252 None:intergenic 15.0%
!! AATAATTAAAGTTTATGATG+CGG + chr2_2:19086882-19086901 Msa0242730:three_prime_UTR 15.0%
!! AGTTAAATTCATTATACCAA+AGG + chr2_2:19086183-19086202 Msa0242730:intron 20.0%
!!! TAATTTAACTTTCTTTCCTT+TGG - chr2_2:19086202-19086221 None:intergenic 20.0%
!!! GAATTTAACTTCCTTTTTTT+TGG - chr2_2:19086234-19086253 None:intergenic 20.0%
!! AATAGTAATCCAATTCTATT+TGG + chr2_2:19086269-19086288 Msa0242730:intron 20.0%
!! TATTTATTGCATAATACAGA+TGG - chr2_2:19087044-19087063 None:intergenic 20.0%
!! AGTTAAATTCATTATACCAA+AGG + chr2_2:19086183-19086202 Msa0242730:intron 20.0%
!!! TAATTTAACTTTCTTTCCTT+TGG - chr2_2:19086202-19086221 None:intergenic 20.0%
!!! GAATTTAACTTCCTTTTTTT+TGG - chr2_2:19086234-19086253 None:intergenic 20.0%
!! AATAGTAATCCAATTCTATT+TGG + chr2_2:19086269-19086288 Msa0242730:intron 20.0%
!! TATTTATTGCATAATACAGA+TGG - chr2_2:19087044-19087063 None:intergenic 20.0%
! ATATGCAAGAAGTAAATGAA+AGG - chr2_2:19085735-19085754 None:intergenic 25.0%
! TTCAACAATTTCAACACTTT+GGG - chr2_2:19085898-19085917 None:intergenic 25.0%
! AATAGAATCTTGAGAAATGA+AGG + chr2_2:19086330-19086349 Msa0242730:intron 25.0%
! ATAATTATTAGACATAACCC+TGG - chr2_2:19086376-19086395 None:intergenic 25.0%
! AGGGTTATGTCTAATAATTA+TGG + chr2_2:19086375-19086394 Msa0242730:intron 25.0%
!!! CATCTGAATCATTTTTTTGA+AGG - chr2_2:19086402-19086421 None:intergenic 25.0%
! TTCAGATGATTAATGATACT+CGG + chr2_2:19086414-19086433 Msa0242730:intron 25.0%
! TATAATGGTTATATTGCAGA+TGG + chr2_2:19086517-19086536 Msa0242730:intron 25.0%
! TTTCACTGAAATCTTAACAA+TGG - chr2_2:19086692-19086711 None:intergenic 25.0%
! GTTTAATTGGCTAGTAATTA+GGG - chr2_2:19086819-19086838 None:intergenic 25.0%
! ATATGCAAGAAGTAAATGAA+AGG - chr2_2:19085735-19085754 None:intergenic 25.0%
! TTCAACAATTTCAACACTTT+GGG - chr2_2:19085898-19085917 None:intergenic 25.0%
! AATAGAATCTTGAGAAATGA+AGG + chr2_2:19086330-19086349 Msa0242730:intron 25.0%
! ATAATTATTAGACATAACCC+TGG - chr2_2:19086376-19086395 None:intergenic 25.0%
! AGGGTTATGTCTAATAATTA+TGG + chr2_2:19086375-19086394 Msa0242730:intron 25.0%
!!! CATCTGAATCATTTTTTTGA+AGG - chr2_2:19086402-19086421 None:intergenic 25.0%
! TTCAGATGATTAATGATACT+CGG + chr2_2:19086414-19086433 Msa0242730:intron 25.0%
! TATAATGGTTATATTGCAGA+TGG + chr2_2:19086517-19086536 Msa0242730:intron 25.0%
! TTTCACTGAAATCTTAACAA+TGG - chr2_2:19086692-19086711 None:intergenic 25.0%
! GTTTAATTGGCTAGTAATTA+GGG - chr2_2:19086819-19086838 None:intergenic 25.0%
CTTCAACAATTTCAACACTT+TGG - chr2_2:19085899-19085918 None:intergenic 30.0%
!! CAAAGTGTTGAAATTGTTGA+AGG + chr2_2:19085897-19085916 Msa0242730:CDS 30.0%
GTTGAAATTGTTGAAGGAAA+TGG + chr2_2:19085903-19085922 Msa0242730:CDS 30.0%
ATCTGAATTACCTTCAACAA+TGG - chr2_2:19085955-19085974 None:intergenic 30.0%
CATGACTATCCAAATAGAAT+TGG - chr2_2:19086281-19086300 None:intergenic 30.0%
! TAATTTGTGTAGCACAAAGT+TGG - chr2_2:19086548-19086567 None:intergenic 30.0%
! TTTGAGACAAAAATTGTTGC+TGG + chr2_2:19086652-19086671 Msa0242730:CDS 30.0%
GGTTTAATTGGCTAGTAATT+AGG - chr2_2:19086820-19086839 None:intergenic 30.0%
CCAAATTAAAGTCCTCAATA+GGG - chr2_2:19086841-19086860 None:intergenic 30.0%
! CCTATTGAGGACTTTAATTT+GGG + chr2_2:19086839-19086858 Msa0242730:three_prime_UTR 30.0%
AACAAAAACCTATGTTGTGT+TGG + chr2_2:19087003-19087022 Msa0242730:three_prime_UTR 30.0%
CTTCAACAATTTCAACACTT+TGG - chr2_2:19085899-19085918 None:intergenic 30.0%
!! CAAAGTGTTGAAATTGTTGA+AGG + chr2_2:19085897-19085916 Msa0242730:CDS 30.0%
GTTGAAATTGTTGAAGGAAA+TGG + chr2_2:19085903-19085922 Msa0242730:CDS 30.0%
ATCTGAATTACCTTCAACAA+TGG - chr2_2:19085955-19085974 None:intergenic 30.0%
CATGACTATCCAAATAGAAT+TGG - chr2_2:19086281-19086300 None:intergenic 30.0%
! TAATTTGTGTAGCACAAAGT+TGG - chr2_2:19086548-19086567 None:intergenic 30.0%
! TTTGAGACAAAAATTGTTGC+TGG + chr2_2:19086652-19086671 Msa0242730:CDS 30.0%
GGTTTAATTGGCTAGTAATT+AGG - chr2_2:19086820-19086839 None:intergenic 30.0%
CCAAATTAAAGTCCTCAATA+GGG - chr2_2:19086841-19086860 None:intergenic 30.0%
! CCTATTGAGGACTTTAATTT+GGG + chr2_2:19086839-19086858 Msa0242730:three_prime_UTR 30.0%
AACAAAAACCTATGTTGTGT+TGG + chr2_2:19087003-19087022 Msa0242730:three_prime_UTR 30.0%
GAAATTGTTGAAGGAAATGG+AGG + chr2_2:19085906-19085925 Msa0242730:CDS 35.0%
GATAGCTTCTTAATAGTTCC+GGG - chr2_2:19085933-19085952 None:intergenic 35.0%
GGATAGCTTCTTAATAGTTC+CGG - chr2_2:19085934-19085953 None:intergenic 35.0%
AAGAAGCTATCCATTGTTGA+AGG + chr2_2:19085942-19085961 Msa0242730:CDS 35.0%
! TTGTACCGACAAACTTTGAT+CGG - chr2_2:19086056-19086075 None:intergenic 35.0%
ATAATACATAAGCTCGTTCC+AGG + chr2_2:19086355-19086374 Msa0242730:intron 35.0%
TAATACATAAGCTCGTTCCA+GGG + chr2_2:19086356-19086375 Msa0242730:intron 35.0%
GCTACACAAATTAGATTCAG+TGG + chr2_2:19086555-19086574 Msa0242730:CDS 35.0%
CAAATTAGATTCAGTGGATG+AGG + chr2_2:19086561-19086580 Msa0242730:CDS 35.0%
TGGATATAACTACAGCTTAG+TGG + chr2_2:19086591-19086610 Msa0242730:CDS 35.0%
GGATATAACTACAGCTTAGT+GGG + chr2_2:19086592-19086611 Msa0242730:CDS 35.0%
TCAGTGAAATACCATACCAA+AGG + chr2_2:19086703-19086722 Msa0242730:CDS 35.0%
TAGCCAATTAAACCCTATTG+AGG + chr2_2:19086826-19086845 Msa0242730:exon 35.0%
AGTCCTCAATAGGGTTTAAT+TGG - chr2_2:19086832-19086851 None:intergenic 35.0%
CCCTATTGAGGACTTTAATT+TGG + chr2_2:19086838-19086857 Msa0242730:three_prime_UTR 35.0%
CCCAAATTAAAGTCCTCAAT+AGG - chr2_2:19086842-19086861 None:intergenic 35.0%
AGTGTGTTGAGTATACATCA+AGG + chr2_2:19086909-19086928 Msa0242730:three_prime_UTR 35.0%
TGAGTATACATCAAGGTCTT+TGG + chr2_2:19086916-19086935 Msa0242730:three_prime_UTR 35.0%
!!! TGAGGTTTGAGTGCTATTTT+GGG + chr2_2:19086972-19086991 Msa0242730:three_prime_UTR 35.0%
GAAATTGTTGAAGGAAATGG+AGG + chr2_2:19085906-19085925 Msa0242730:CDS 35.0%
GATAGCTTCTTAATAGTTCC+GGG - chr2_2:19085933-19085952 None:intergenic 35.0%
GGATAGCTTCTTAATAGTTC+CGG - chr2_2:19085934-19085953 None:intergenic 35.0%
AAGAAGCTATCCATTGTTGA+AGG + chr2_2:19085942-19085961 Msa0242730:CDS 35.0%
! TTGTACCGACAAACTTTGAT+CGG - chr2_2:19086056-19086075 None:intergenic 35.0%
ATAATACATAAGCTCGTTCC+AGG + chr2_2:19086355-19086374 Msa0242730:intron 35.0%
TAATACATAAGCTCGTTCCA+GGG + chr2_2:19086356-19086375 Msa0242730:intron 35.0%
GCTACACAAATTAGATTCAG+TGG + chr2_2:19086555-19086574 Msa0242730:CDS 35.0%
CAAATTAGATTCAGTGGATG+AGG + chr2_2:19086561-19086580 Msa0242730:CDS 35.0%
TGGATATAACTACAGCTTAG+TGG + chr2_2:19086591-19086610 Msa0242730:CDS 35.0%
GGATATAACTACAGCTTAGT+GGG + chr2_2:19086592-19086611 Msa0242730:CDS 35.0%
TCAGTGAAATACCATACCAA+AGG + chr2_2:19086703-19086722 Msa0242730:CDS 35.0%
TAGCCAATTAAACCCTATTG+AGG + chr2_2:19086826-19086845 Msa0242730:exon 35.0%
AGTCCTCAATAGGGTTTAAT+TGG - chr2_2:19086832-19086851 None:intergenic 35.0%
CCCTATTGAGGACTTTAATT+TGG + chr2_2:19086838-19086857 Msa0242730:three_prime_UTR 35.0%
CCCAAATTAAAGTCCTCAAT+AGG - chr2_2:19086842-19086861 None:intergenic 35.0%
AGTGTGTTGAGTATACATCA+AGG + chr2_2:19086909-19086928 Msa0242730:three_prime_UTR 35.0%
TGAGTATACATCAAGGTCTT+TGG + chr2_2:19086916-19086935 Msa0242730:three_prime_UTR 35.0%
!!! TGAGGTTTGAGTGCTATTTT+GGG + chr2_2:19086972-19086991 Msa0242730:three_prime_UTR 35.0%
GACAAACTTTGATCGGTTGT+CGG - chr2_2:19086049-19086068 None:intergenic 40.0%
GACAACCGATCAAAGTTTGT+CGG + chr2_2:19086048-19086067 Msa0242730:intron 40.0%
GACAAACATGATGCGACAAA+TGG + chr2_2:19086111-19086130 Msa0242730:intron 40.0%
TATAACTACAGCTTAGTGGG+AGG + chr2_2:19086595-19086614 Msa0242730:CDS 40.0%
!! AAAATTGTTGCTGGCTCTGA+TGG + chr2_2:19086661-19086680 Msa0242730:CDS 40.0%
AGATAGAGTTGCATCACCTT+TGG - chr2_2:19086722-19086741 None:intergenic 40.0%
CTTGATAAGTCCAGTTCCTT+TGG - chr2_2:19086770-19086789 None:intergenic 40.0%
CAAAGGAACTGGACTTATCA+AGG + chr2_2:19086768-19086787 Msa0242730:CDS 40.0%
!! TACATGTGTGTTGGCTTTGT+TGG + chr2_2:19086943-19086962 Msa0242730:three_prime_UTR 40.0%
!!! GTGAGGTTTGAGTGCTATTT+TGG + chr2_2:19086971-19086990 Msa0242730:three_prime_UTR 40.0%
CCTTATCACCAACACAACAT+AGG - chr2_2:19087014-19087033 None:intergenic 40.0%
!! CCTATGTTGTGTTGGTGATA+AGG + chr2_2:19087011-19087030 Msa0242730:three_prime_UTR 40.0%
GACAAACTTTGATCGGTTGT+CGG - chr2_2:19086049-19086068 None:intergenic 40.0%
GACAACCGATCAAAGTTTGT+CGG + chr2_2:19086048-19086067 Msa0242730:intron 40.0%
GACAAACATGATGCGACAAA+TGG + chr2_2:19086111-19086130 Msa0242730:intron 40.0%
TATAACTACAGCTTAGTGGG+AGG + chr2_2:19086595-19086614 Msa0242730:CDS 40.0%
!! AAAATTGTTGCTGGCTCTGA+TGG + chr2_2:19086661-19086680 Msa0242730:CDS 40.0%
AGATAGAGTTGCATCACCTT+TGG - chr2_2:19086722-19086741 None:intergenic 40.0%
CTTGATAAGTCCAGTTCCTT+TGG - chr2_2:19086770-19086789 None:intergenic 40.0%
CAAAGGAACTGGACTTATCA+AGG + chr2_2:19086768-19086787 Msa0242730:CDS 40.0%
!! TACATGTGTGTTGGCTTTGT+TGG + chr2_2:19086943-19086962 Msa0242730:three_prime_UTR 40.0%
!!! GTGAGGTTTGAGTGCTATTT+TGG + chr2_2:19086971-19086990 Msa0242730:three_prime_UTR 40.0%
CCTTATCACCAACACAACAT+AGG - chr2_2:19087014-19087033 None:intergenic 40.0%
!! CCTATGTTGTGTTGGTGATA+AGG + chr2_2:19087011-19087030 Msa0242730:three_prime_UTR 40.0%
TGATGAACATGTCTCAACCG+TGG + chr2_2:19085803-19085822 Msa0242730:CDS 45.0%
! AGAGCCTTGTAGAGTTTAGC+TGG - chr2_2:19085831-19085850 None:intergenic 45.0%
TGCTGATGAAATCGTCCCAA+AGG + chr2_2:19085860-19085879 Msa0242730:CDS 45.0%
TCAGTGGATGAGGCAAACTT+TGG + chr2_2:19086571-19086590 Msa0242730:CDS 45.0%
GAGTTGCATCACCTTTGGTA+TGG - chr2_2:19086717-19086736 None:intergenic 45.0%
! TCTATCTGAAGCAGTACGTG+AGG + chr2_2:19086735-19086754 Msa0242730:CDS 45.0%
TGGACTTATCAAGGCCATTG+AGG + chr2_2:19086777-19086796 Msa0242730:CDS 45.0%
GGACTTATCAAGGCCATTGA+GGG + chr2_2:19086778-19086797 Msa0242730:CDS 45.0%
TGCTAAAACGTAGCCCTCAA+TGG - chr2_2:19086794-19086813 None:intergenic 45.0%
! TTTGGCTCGTACATGTGTGT+TGG + chr2_2:19086934-19086953 Msa0242730:three_prime_UTR 45.0%
!! TGGCTTTGTTGGATGTTGTG+AGG + chr2_2:19086954-19086973 Msa0242730:three_prime_UTR 45.0%
TGATGAACATGTCTCAACCG+TGG + chr2_2:19085803-19085822 Msa0242730:CDS 45.0%
! AGAGCCTTGTAGAGTTTAGC+TGG - chr2_2:19085831-19085850 None:intergenic 45.0%
TGCTGATGAAATCGTCCCAA+AGG + chr2_2:19085860-19085879 Msa0242730:CDS 45.0%
TCAGTGGATGAGGCAAACTT+TGG + chr2_2:19086571-19086590 Msa0242730:CDS 45.0%
GAGTTGCATCACCTTTGGTA+TGG - chr2_2:19086717-19086736 None:intergenic 45.0%
! TCTATCTGAAGCAGTACGTG+AGG + chr2_2:19086735-19086754 Msa0242730:CDS 45.0%
TGGACTTATCAAGGCCATTG+AGG + chr2_2:19086777-19086796 Msa0242730:CDS 45.0%
GGACTTATCAAGGCCATTGA+GGG + chr2_2:19086778-19086797 Msa0242730:CDS 45.0%
TGCTAAAACGTAGCCCTCAA+TGG - chr2_2:19086794-19086813 None:intergenic 45.0%
! TTTGGCTCGTACATGTGTGT+TGG + chr2_2:19086934-19086953 Msa0242730:three_prime_UTR 45.0%
!! TGGCTTTGTTGGATGTTGTG+AGG + chr2_2:19086954-19086973 Msa0242730:three_prime_UTR 45.0%
!! ATTAAATTAAATTAAAATGA+CGG - chr2_2:19087092-19087111 None:intergenic 5.0%
!! ATTAAATTAAATTAAAATGA+CGG - chr2_2:19087092-19087111 None:intergenic 5.0%
GTAGAGTTTAGCTGGAGCCA+CGG - chr2_2:19085823-19085842 None:intergenic 50.0%
GGCTCCAGCTAAACTCTACA+AGG + chr2_2:19085824-19085843 Msa0242730:CDS 50.0%
GGGCAGCAGAAATCACCTTT+GGG - chr2_2:19085878-19085897 None:intergenic 50.0%
TGGGCAGCAGAAATCACCTT+TGG - chr2_2:19085879-19085898 None:intergenic 50.0%
GTTGAAGGAAATGGAGGACC+CGG + chr2_2:19085912-19085931 Msa0242730:CDS 50.0%
TACAGCTTAGTGGGAGGAAC+AGG + chr2_2:19086601-19086620 Msa0242730:CDS 50.0%
ACAGCTTAGTGGGAGGAACA+GGG + chr2_2:19086602-19086621 Msa0242730:CDS 50.0%
!! ATTGTTGCTGGCTCTGATGG+TGG + chr2_2:19086664-19086683 Msa0242730:CDS 50.0%
AGCAGTACGTGAGGAGACTA+AGG + chr2_2:19086744-19086763 Msa0242730:CDS 50.0%
GAGACTAAGGCCAAAGGAAC+TGG + chr2_2:19086757-19086776 Msa0242730:CDS 50.0%
GTAGAGTTTAGCTGGAGCCA+CGG - chr2_2:19085823-19085842 None:intergenic 50.0%
GGCTCCAGCTAAACTCTACA+AGG + chr2_2:19085824-19085843 Msa0242730:CDS 50.0%
GGGCAGCAGAAATCACCTTT+GGG - chr2_2:19085878-19085897 None:intergenic 50.0%
TGGGCAGCAGAAATCACCTT+TGG - chr2_2:19085879-19085898 None:intergenic 50.0%
GTTGAAGGAAATGGAGGACC+CGG + chr2_2:19085912-19085931 Msa0242730:CDS 50.0%
TACAGCTTAGTGGGAGGAAC+AGG + chr2_2:19086601-19086620 Msa0242730:CDS 50.0%
ACAGCTTAGTGGGAGGAACA+GGG + chr2_2:19086602-19086621 Msa0242730:CDS 50.0%
!! ATTGTTGCTGGCTCTGATGG+TGG + chr2_2:19086664-19086683 Msa0242730:CDS 50.0%
AGCAGTACGTGAGGAGACTA+AGG + chr2_2:19086744-19086763 Msa0242730:CDS 50.0%
GAGACTAAGGCCAAAGGAAC+TGG + chr2_2:19086757-19086776 Msa0242730:CDS 50.0%
CTTAGTGGGAGGAACAGGGT+TGG + chr2_2:19086606-19086625 Msa0242730:CDS 55.0%
CGTGAGGAGACTAAGGCCAA+AGG + chr2_2:19086751-19086770 Msa0242730:CDS 55.0%
CTTAGTGGGAGGAACAGGGT+TGG + chr2_2:19086606-19086625 Msa0242730:CDS 55.0%
CGTGAGGAGACTAAGGCCAA+AGG + chr2_2:19086751-19086770 Msa0242730:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 19085686 19087127 19085686 ID=Msa0242730;Name=Msa0242730
chr2_2 mRNA 19085686 19087127 19085686 ID=Msa0242730-mRNA-1;Parent=Msa0242730;Name=Msa0242730-mRNA-1;_AED=0.40;_eAED=0.40;_QI=97|1|1|1|1|1|2|299|157
chr2_2 exon 19085686 19085963 19085686 ID=Msa0242730-mRNA-1:exon:7781;Parent=Msa0242730-mRNA-1
chr2_2 exon 19086536 19087127 19086536 ID=Msa0242730-mRNA-1:exon:7782;Parent=Msa0242730-mRNA-1
chr2_2 five_prime_UTR 19085686 19085782 19085686 ID=Msa0242730-mRNA-1:five_prime_utr;Parent=Msa0242730-mRNA-1
chr2_2 CDS 19085783 19085963 19085783 ID=Msa0242730-mRNA-1:cds;Parent=Msa0242730-mRNA-1
chr2_2 CDS 19086536 19086828 19086536 ID=Msa0242730-mRNA-1:cds;Parent=Msa0242730-mRNA-1
chr2_2 three_prime_UTR 19086829 19087127 19086829 ID=Msa0242730-mRNA-1:three_prime_utr;Parent=Msa0242730-mRNA-1
Gene Sequence

>Msa0242730

ATGGGTGTTTTTACTTTCAATGATGAACATGTCTCAACCGTGGCTCCAGCTAAACTCTACAAGGCTCTTGCAAAAGATGCTGATGAAATCGTCCCAAAGGTGATTTCTGCTGCCCAAAGTGTTGAAATTGTTGAAGGAAATGGAGGACCCGGAACTATTAAGAAGCTATCCATTGTTGAAGATGGCAAAACCAACTTTGTGCTACACAAATTAGATTCAGTGGATGAGGCAAACTTTGGATATAACTACAGCTTAGTGGGAGGAACAGGGTTGGATGAAAGTTTAGAGAAAGTTGAATTTGAGACAAAAATTGTTGCTGGCTCTGATGGTGGATCCATTGTTAAGATTTCAGTGAAATACCATACCAAAGGTGATGCAACTCTATCTGAAGCAGTACGTGAGGAGACTAAGGCCAAAGGAACTGGACTTATCAAGGCCATTGAGGGCTACGTTTTAGCAAACCCTAATTACTAG
Protein sequence

>Msa0242730

MGVFTFNDEHVSTVAPAKLYKALAKDADEIVPKVISAAQSVEIVEGNGGPGTIKKLSIVEDGKTNFVLHKLDSVDEANFGYNYSLVGGTGLDESLEKVEFETKIVAGSDGGSIVKISVKYHTKGDATLSEAVREETKAKGTGLIKAIEGYVLANPNY*