AlfalfaGEDB | Msa1456490

M. sativa cultivar zhongmu-4 / Msa1456490

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009620 GO:0009627 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009814 GO:0009817 GO:0009987 GO:0010033 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0042221 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045087 GO:0046483 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0080027 GO:0090304 GO:0090305 GO:0090501 GO:0097367 GO:0098542 GO:0140098 GO:1901360
PFAM: PF00187.22

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456490	XP_013450528.1	93.689	206	9	1	1	206	1	202	7.67e-132	379

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456490	sp\|P02877\|HEVE_HEVBR	70.098	204	54	3	6	205	1	201	1.92e-103	299

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456490	A0A072U5A4	93.689	206	9	1	1	206	1	202	3.67e-132	379

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0052780	Msa1456490	0.810988	8.763013e-51	-8.615850e-47
Msa0053640	Msa1456490	0.800972	1.121552e-48	-8.615850e-47
Msa0097570	Msa1456490	0.810597	1.065240e-50	-8.615850e-47
Msa1392550	Msa1456490	0.814209	1.731269e-51	-8.615850e-47
Msa1422380	Msa1456490	0.832947	7.065993e-56	-8.615850e-47
Msa1449580	Msa1456490	0.981262	3.662461e-152	-8.615850e-47
Msa0701430	Msa1456490	0.816391	5.664754e-52	-8.615850e-47
Msa0826380	Msa1456490	0.818322	2.082820e-52	-8.615850e-47
Msa0826450	Msa1456490	0.800966	1.124785e-48	-8.615850e-47
Msa0145430	Msa1456490	0.842042	3.292568e-58	-8.615850e-47
Msa0214800	Msa1456490	0.802895	4.514545e-49	-8.615850e-47
Msa0214820	Msa1456490	0.804270	2.341615e-49	-8.615850e-47
Msa0225720	Msa1456490	0.837194	6.001829e-57	-8.615850e-47
Msa1240200	Msa1456490	0.811397	7.144337e-51	-8.615850e-47
Msa1240230	Msa1456490	0.810082	1.375746e-50	-8.615850e-47
Msa1269440	Msa1456490	0.804360	2.242650e-49	-8.615850e-47
Msa1038300	Msa1456490	0.981546	7.450688e-153	-8.615850e-47
Msa0242720	Msa1456490	0.837927	3.893654e-57	-8.615850e-47
Msa0242730	Msa1456490	0.800671	1.292032e-48	-8.615850e-47
Msa0281010	Msa1456490	0.803901	2.793726e-49	-8.615850e-47
Msa0294200	Msa1456490	0.816960	4.223078e-52	-8.615850e-47
Msa1173150	Msa1456490	0.811827	5.760687e-51	-8.615850e-47
Msa0578460	Msa1456490	0.856189	3.806531e-62	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456490	MtrunA17_Chr7g0274181	93.689	206	9	1	1	206	1	202	7.06e-136	379
Msa1456490	MtrunA17_Chr1g0190671	71.901	121	34	0	68	188	24	144	4.54e-64	194
Msa1456490	MtrunA17_Chr1g0190661	71.074	121	35	0	68	188	24	144	2.01e-63	193
Msa1456490	MtrunA17_Chr1g0190641	70.000	120	36	0	71	190	22	141	3.28e-63	192
Msa1456490	MtrunA17_Chr1g0190651	70.732	123	36	0	68	190	24	146	9.26e-63	191
Msa1456490	MtrunA17_Chr6g0484021	50.000	154	60	2	61	197	35	188	4.63e-43	152
Msa1456490	MtrunA17_Chr6g0483971	47.692	130	64	2	61	188	15	142	9.82e-37	130
Msa1456490	MtrunA17_Chr6g0484031	47.445	137	61	2	61	190	15	147	1.86e-33	125
Msa1456490	MtrunA17_Chr6g0484041	44.853	136	58	3	68	188	34	167	5.72e-32	121
Msa1456490	MtrunA17_Chr3g0145981	51.515	66	32	0	1	66	24	89	6.38e-17	77.8
Msa1456490	MtrunA17_Chr8g0370831	68.293	41	13	0	22	62	22	62	5.80e-13	66.2
Msa1456490	MtrunA17_Chr8g0370851	50.000	56	28	0	6	61	7	62	6.71e-12	63.2
Msa1456490	MtrunA17_Chr8g0370821	67.500	40	13	0	22	61	33	72	1.12e-11	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456490	AT3G04720.1	71.292	209	52	3	3	203	2	210	3.70e-97	281
Msa1456490	AT3G12500.1	68.293	41	12	1	22	61	33	73	8.62e-12	63.5

Find 87 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGATTAGACATGGGAAAATT+TGG	0.218092	tig0037458:+1904	Msa1456490:exon
ATGATGCAGGTGACAAATTC+AGG	0.293677	tig0037458:+2494	Msa1456490:intron
CAGCAATGGAGGGTTGGATT+TGG	0.326401	tig0037458:+2556	Msa1456490:CDS
TACTCATGGCGTAGCAAGTA+TGG	0.353266	tig0037458:+2228	Msa1456490:CDS
CTTCTTGTGGAAAGTGTCTC+AGG	0.353594	tig0037458:+2292	Msa1456490:CDS
TGGCTGCAACAAAGGTTGTT+TGG	0.365069	tig0037458:-2015	Msa1456490:intergenic
GCCTCACTCTGGAAGAGTTT+CGG	0.382794	tig0037458:+3015	Msa1456490:three_prime_UTR
ATTCTAGTCAACAATATAAC+AGG	0.389534	tig0037458:-2937	Msa1456490:intergenic
GCTTGACCACGAGGTCCAAC+AGG	0.397549	tig0037458:-2270	Msa1456490:intergenic
GGAGGGTTGGATTTGGATGT+AGG	0.409363	tig0037458:+2563	Msa1456490:CDS
ATCACGGTGCGGCCTCACTC+TGG	0.419143	tig0037458:+3004	Msa1456490:three_prime_UTR
AAGTCCCATCCATGTTGCTC+TGG	0.422201	tig0037458:-2159	Msa1456490:intergenic
TATTGTAAGCTATCAGTTTG+TGG	0.428774	tig0037458:+2637	Msa1456490:CDS
TCTTATTAAATTATTGCCAA+TGG	0.460327	tig0037458:+1814	Msa1456490:five_prime_UTR
GCTATCAGTTTGTGGATTGT+GGG	0.462963	tig0037458:+2645	Msa1456490:CDS
AGATGGCAGAGGATACCAAC+AGG	0.473028	tig0037458:+2607	Msa1456490:CDS
AACCTTTGTTGCAGCCAATA+CGG	0.476377	tig0037458:+2021	Msa1456490:CDS
TACTTGCTACGCCATGAGTA+AGG	0.479661	tig0037458:-2225	Msa1456490:intergenic
CTGAGGCAGAGGAAGCAGAT+TGG	0.484338	tig0037458:-2725	Msa1456490:intergenic
AACCGTATTGGCTGCAACAA+AGG	0.489204	tig0037458:-2023	Msa1456490:intergenic
AAATTCAGGGACGGGAGCAC+AGG	0.490592	tig0037458:+2508	Msa1456490:CDS
AGCTATCAGTTTGTGGATTG+TGG	0.492406	tig0037458:+2644	Msa1456490:CDS
GAACAATGCGGTAAACAAGC+TGG	0.511319	tig0037458:+1979	Msa1456490:CDS
TTATTGTTCAGCATCAATGA+TGG	0.515481	tig0037458:-2699	Msa1456490:intergenic
AGTGGTTGTGTTTGTAACAA+AGG	0.519441	tig0037458:+2765	Msa1456490:three_prime_UTR
TGGTACCACACCAACCGTAT+TGG	0.526780	tig0037458:-2035	Msa1456490:intergenic
TAAGTGCTTATTGTTCAACT+TGG	0.529463	tig0037458:+2190	Msa1456490:CDS
TGACAATTACTCTGACAGTT+CGG	0.538086	tig0037458:-2075	Msa1456490:intergenic
CAGGTGACAAATTCAGGGAC+GGG	0.545443	tig0037458:+2500	Msa1456490:intron
GAATATTCCAACCATAAAAG+TGG	0.545641	tig0037458:+2956	Msa1456490:three_prime_UTR
TTACTACAGCACTGAGGCAG+AGG	0.548934	tig0037458:-2736	Msa1456490:intergenic
CCTCGTGGTCAAGCTTCTTG+TGG	0.556286	tig0037458:+2279	Msa1456490:CDS
TCAATGCAGCAATGGAGGGT+TGG	0.558488	tig0037458:+2550	Msa1456490:CDS
CTGATGTGATGGAGCTCCGG+TGG	0.560689	tig0037458:+2980	Msa1456490:three_prime_UTR
AAGTGCTTATTGTTCAACTT+GGG	0.564174	tig0037458:+2191	Msa1456490:CDS
AATGATGGAGAACAGAGGAT+TGG	0.564526	tig0037458:-2684	Msa1456490:intergenic
ATGGAGCTCCGGTGGGATCA+CGG	0.572433	tig0037458:+2988	Msa1456490:three_prime_UTR
TTATTGCCAATGGAAAATGA+TGG	0.576576	tig0037458:+1824	Msa1456490:five_prime_UTR
GTGCTGTAGTAATTACTAAG+TGG	0.578409	tig0037458:+2747	Msa1456490:three_prime_UTR
GTAGATCAATGCAGCAATGG+AGG	0.578522	tig0037458:+2545	Msa1456490:CDS
TTTGTTGCAGCCAATACGGT+TGG	0.578744	tig0037458:+2025	Msa1456490:CDS
ATAAAAGTGGTCTGATGTGA+TGG	0.579232	tig0037458:+2969	Msa1456490:three_prime_UTR
TGATGCAGGTGACAAATTCA+GGG	0.583955	tig0037458:+2495	Msa1456490:intron
GACATATACCCATGTGCATG+CGG	0.585883	tig0037458:-1751	Msa1456490:intergenic
GGTCTGATGTGATGGAGCTC+CGG	0.586642	tig0037458:+2977	Msa1456490:three_prime_UTR
ATGCAAGCAAACCTTACTCA+TGG	0.586811	tig0037458:+2214	Msa1456490:CDS
ATCAACCAGAGCAACATGGA+TGG	0.587569	tig0037458:+2154	Msa1456490:CDS
TCTATTTATGACTATGTACA+TGG	0.588614	tig0037458:+2893	Msa1456490:three_prime_UTR
TCAACCAGAGCAACATGGAT+GGG	0.598724	tig0037458:+2155	Msa1456490:CDS
AAATTGTATTAGATTAGACA+TGG	0.600324	tig0037458:+1894	Msa1456490:exon
CATGGCGTAGCAAGTATGGT+TGG	0.600676	tig0037458:+2232	Msa1456490:CDS
TAGATCAATGCAGCAATGGA+GGG	0.603290	tig0037458:+2546	Msa1456490:CDS
AGGCCGCACCGTGATCCCAC+CGG	0.604066	tig0037458:-2996	Msa1456490:intergenic
TTACAATAAGATGTCCCTGT+TGG	0.604159	tig0037458:-2622	Msa1456490:intergenic
GCAGGTGACAAATTCAGGGA+CGG	0.605105	tig0037458:+2499	Msa1456490:intron
TTTATGTCACGATATTGACT+AGG	0.609065	tig0037458:-1787	Msa1456490:intergenic
AGTAATTGTCATGGCAGTAG+TGG	0.614410	tig0037458:+2087	Msa1456490:CDS
GTCACGATATTGACTAGGCA+TGG	0.614770	tig0037458:-1782	Msa1456490:intergenic
TGTGGCCCTGTTGGACCTCG+TGG	0.621769	tig0037458:+2264	Msa1456490:CDS
TGTCATGGCAGTAGTGGTGG+TGG	0.621989	tig0037458:+2093	Msa1456490:CDS
TTCTTGTGGAAAGTGTCTCA+GGG	0.622227	tig0037458:+2293	Msa1456490:CDS
AATTGTCATGGCAGTAGTGG+TGG	0.624496	tig0037458:+2090	Msa1456490:CDS
AAGCCTAGCGGTATTAACAT+TGG	0.627981	tig0037458:+1930	Msa1456490:CDS
ACCGAAACTCTTCCAGAGTG+AGG	0.627984	tig0037458:-3016	Msa1456490:intergenic
AACTGTCAGAGTAATTGTCA+TGG	0.629228	tig0037458:+2078	Msa1456490:CDS
TGATGTGATGGAGCTCCGGT+GGG	0.634768	tig0037458:+2981	Msa1456490:three_prime_UTR
ATTGTAGATCAATGCAGCAA+TGG	0.636888	tig0037458:+2542	Msa1456490:CDS
TACTATCAACCAGAGCAACA+TGG	0.648851	tig0037458:+2150	Msa1456490:CDS
TGCAGCCAATACGGTTGGTG+TGG	0.651269	tig0037458:+2030	Msa1456490:CDS
TTTAACAGAATCGACACAGA+TGG	0.651956	tig0037458:+2590	Msa1456490:CDS
CCACAAGAAGCTTGACCACG+AGG	0.656609	tig0037458:-2279	Msa1456490:intergenic
AGAATCGACACAGATGGCAG+AGG	0.657142	tig0037458:+2596	Msa1456490:CDS
ACACCAATGTTAATACCGCT+AGG	0.661884	tig0037458:-1933	Msa1456490:intergenic
AATTGTATTAGATTAGACAT+GGG	0.670498	tig0037458:+1895	Msa1456490:exon
GCTCCGGTGGGATCACGGTG+CGG	0.677688	tig0037458:+2993	Msa1456490:three_prime_UTR
ATAAACAGAGAAACAAACAC+GGG	0.692316	tig0037458:+1863	Msa1456490:five_prime_UTR
CAATGCGGTAAACAAGCTGG+AGG	0.695826	tig0037458:+1982	Msa1456490:CDS
CTTGACCACGAGGTCCAACA+GGG	0.697195	tig0037458:-2269	Msa1456490:intergenic
CGGACCACAGTATTCATCTG+TGG	0.698610	tig0037458:-2055	Msa1456490:intergenic
ATATACCCATGTGCATGCGG+CGG	0.709883	tig0037458:-1748	Msa1456490:intergenic
GCATCAATGATGGAGAACAG+AGG	0.711827	tig0037458:-2689	Msa1456490:intergenic
TATAAACAGAGAAACAAACA+CGG	0.729584	tig0037458:+1862	Msa1456490:five_prime_UTR
GATGGCAGAGGATACCAACA+GGG	0.745988	tig0037458:+2608	Msa1456490:CDS
ACAACAGTTGCAGAACAATG+CGG	0.746680	tig0037458:+1967	Msa1456490:CDS
AAAATTTGGAGTAAGCCTAG+CGG	0.781644	tig0037458:+1918	Msa1456490:CDS
TAGTAATTACTACAGCACTG+AGG	0.788673	tig0037458:-2742	Msa1456490:intergenic
GGTACCACAGATGAATACTG+TGG	0.812966	tig0037458:+2051	Msa1456490:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAGAGTAAATATAGATAAAA+AGG	-	tig0037458:2350-2369	Msa1456490:intergenic	15.0%
!!!	TACTCTAATGTTTTAAAAAT+AGG	+	tig0037458:2363-2382	Msa1456490:intron	15.0%
!!	TAGAGTAAATATAGATAAAA+AGG	-	tig0037458:2350-2369	Msa1456490:intergenic	15.0%
!!!	TACTCTAATGTTTTAAAAAT+AGG	+	tig0037458:2363-2382	Msa1456490:intron	15.0%
!!	TCTTATTAAATTATTGCCAA+TGG	+	tig0037458:1814-1833	Msa1456490:five_prime_UTR	20.0%
!!	CTCTGTTTATATAGAAAAAT+AGG	-	tig0037458:1853-1872	Msa1456490:intergenic	20.0%
!!	AAATTGTATTAGATTAGACA+TGG	+	tig0037458:1894-1913	Msa1456490:exon	20.0%
!!	AATTGTATTAGATTAGACAT+GGG	+	tig0037458:1895-1914	Msa1456490:exon	20.0%
!!	TAGATAAAAAGGAATAGAAT+TGG	-	tig0037458:2339-2358	Msa1456490:intergenic	20.0%
!!	TCTTATTAAATTATTGCCAA+TGG	+	tig0037458:1814-1833	Msa1456490:five_prime_UTR	20.0%
!!	CTCTGTTTATATAGAAAAAT+AGG	-	tig0037458:1853-1872	Msa1456490:intergenic	20.0%
!!	AAATTGTATTAGATTAGACA+TGG	+	tig0037458:1894-1913	Msa1456490:exon	20.0%
!!	AATTGTATTAGATTAGACAT+GGG	+	tig0037458:1895-1914	Msa1456490:exon	20.0%
!!	TAGATAAAAAGGAATAGAAT+TGG	-	tig0037458:2339-2358	Msa1456490:intergenic	20.0%
!	TATAAACAGAGAAACAAACA+CGG	+	tig0037458:1862-1881	Msa1456490:five_prime_UTR	25.0%
!	TCTATTTATGACTATGTACA+TGG	+	tig0037458:2893-2912	Msa1456490:three_prime_UTR	25.0%
!	ATTCTAGTCAACAATATAAC+AGG	-	tig0037458:2940-2959	Msa1456490:intergenic	25.0%
!	TATAAACAGAGAAACAAACA+CGG	+	tig0037458:1862-1881	Msa1456490:five_prime_UTR	25.0%
!	TCTATTTATGACTATGTACA+TGG	+	tig0037458:2893-2912	Msa1456490:three_prime_UTR	25.0%
!	ATTCTAGTCAACAATATAAC+AGG	-	tig0037458:2940-2959	Msa1456490:intergenic	25.0%
!	TTTATGTCACGATATTGACT+AGG	-	tig0037458:1790-1809	None:intergenic	30.0%
	TTATTGCCAATGGAAAATGA+TGG	+	tig0037458:1824-1843	Msa1456490:five_prime_UTR	30.0%
	ATAAACAGAGAAACAAACAC+GGG	+	tig0037458:1863-1882	Msa1456490:five_prime_UTR	30.0%
	AGATTAGACATGGGAAAATT+TGG	+	tig0037458:1904-1923	Msa1456490:exon	30.0%
	TAAGTGCTTATTGTTCAACT+TGG	+	tig0037458:2190-2209	Msa1456490:CDS	30.0%
	AAGTGCTTATTGTTCAACTT+GGG	+	tig0037458:2191-2210	Msa1456490:CDS	30.0%
	TATTGTAAGCTATCAGTTTG+TGG	+	tig0037458:2637-2656	Msa1456490:CDS	30.0%
	TTATTGTTCAGCATCAATGA+TGG	-	tig0037458:2702-2721	Msa1456490:intergenic	30.0%
	GAATATTCCAACCATAAAAG+TGG	+	tig0037458:2956-2975	Msa1456490:three_prime_UTR	30.0%
!	TTTATGTCACGATATTGACT+AGG	-	tig0037458:1790-1809	Msa1456490:intergenic	30.0%
	TTATTGCCAATGGAAAATGA+TGG	+	tig0037458:1824-1843	Msa1456490:five_prime_UTR	30.0%
	ATAAACAGAGAAACAAACAC+GGG	+	tig0037458:1863-1882	Msa1456490:five_prime_UTR	30.0%
	AGATTAGACATGGGAAAATT+TGG	+	tig0037458:1904-1923	Msa1456490:exon	30.0%
	TAAGTGCTTATTGTTCAACT+TGG	+	tig0037458:2190-2209	Msa1456490:CDS	30.0%
	AAGTGCTTATTGTTCAACTT+GGG	+	tig0037458:2191-2210	Msa1456490:CDS	30.0%
	TATTGTAAGCTATCAGTTTG+TGG	+	tig0037458:2637-2656	Msa1456490:CDS	30.0%
	TTATTGTTCAGCATCAATGA+TGG	-	tig0037458:2702-2721	Msa1456490:intergenic	30.0%
	GAATATTCCAACCATAAAAG+TGG	+	tig0037458:2956-2975	Msa1456490:three_prime_UTR	30.0%
!	AGGTAACCATCATTTTCCAT+TGG	-	tig0037458:1833-1852	Msa1456490:intergenic	35.0%
!	AAAATTTGGAGTAAGCCTAG+CGG	+	tig0037458:1918-1937	Msa1456490:CDS	35.0%
	TGACAATTACTCTGACAGTT+CGG	-	tig0037458:2078-2097	Msa1456490:intergenic	35.0%
	AACTGTCAGAGTAATTGTCA+TGG	+	tig0037458:2078-2097	Msa1456490:CDS	35.0%
!	GAATGTAAATGTGATGATGC+AGG	+	tig0037458:2481-2500	Msa1456490:intron	35.0%
	ATTGTAGATCAATGCAGCAA+TGG	+	tig0037458:2542-2561	Msa1456490:CDS	35.0%
	TTTAACAGAATCGACACAGA+TGG	+	tig0037458:2590-2609	Msa1456490:CDS	35.0%
	TTACAATAAGATGTCCCTGT+TGG	-	tig0037458:2625-2644	Msa1456490:intergenic	35.0%
	TAGTAATTACTACAGCACTG+AGG	-	tig0037458:2745-2764	Msa1456490:intergenic	35.0%
	GTGCTGTAGTAATTACTAAG+TGG	+	tig0037458:2747-2766	Msa1456490:three_prime_UTR	35.0%
	AGTGGTTGTGTTTGTAACAA+AGG	+	tig0037458:2765-2784	Msa1456490:three_prime_UTR	35.0%
!!	ATCACATCAGACCACTTTTA+TGG	-	tig0037458:2970-2989	Msa1456490:intergenic	35.0%
	ATAAAAGTGGTCTGATGTGA+TGG	+	tig0037458:2969-2988	Msa1456490:three_prime_UTR	35.0%
!	AGGTAACCATCATTTTCCAT+TGG	-	tig0037458:1833-1852	Msa1456490:intergenic	35.0%
!	AAAATTTGGAGTAAGCCTAG+CGG	+	tig0037458:1918-1937	Msa1456490:CDS	35.0%
	TGACAATTACTCTGACAGTT+CGG	-	tig0037458:2078-2097	Msa1456490:intergenic	35.0%
	AACTGTCAGAGTAATTGTCA+TGG	+	tig0037458:2078-2097	Msa1456490:CDS	35.0%
!	GAATGTAAATGTGATGATGC+AGG	+	tig0037458:2481-2500	Msa1456490:intron	35.0%
	ATTGTAGATCAATGCAGCAA+TGG	+	tig0037458:2542-2561	Msa1456490:CDS	35.0%
	TTTAACAGAATCGACACAGA+TGG	+	tig0037458:2590-2609	Msa1456490:CDS	35.0%
	TTACAATAAGATGTCCCTGT+TGG	-	tig0037458:2625-2644	Msa1456490:intergenic	35.0%
	TAGTAATTACTACAGCACTG+AGG	-	tig0037458:2745-2764	Msa1456490:intergenic	35.0%
	GTGCTGTAGTAATTACTAAG+TGG	+	tig0037458:2747-2766	Msa1456490:three_prime_UTR	35.0%
	AGTGGTTGTGTTTGTAACAA+AGG	+	tig0037458:2765-2784	Msa1456490:three_prime_UTR	35.0%
!!	ATCACATCAGACCACTTTTA+TGG	-	tig0037458:2970-2989	Msa1456490:intergenic	35.0%
	ATAAAAGTGGTCTGATGTGA+TGG	+	tig0037458:2969-2988	Msa1456490:three_prime_UTR	35.0%
	AAGCCTAGCGGTATTAACAT+TGG	+	tig0037458:1930-1949	Msa1456490:CDS	40.0%
	ACACCAATGTTAATACCGCT+AGG	-	tig0037458:1936-1955	Msa1456490:intergenic	40.0%
	ACAACAGTTGCAGAACAATG+CGG	+	tig0037458:1967-1986	Msa1456490:CDS	40.0%
	AACCTTTGTTGCAGCCAATA+CGG	+	tig0037458:2021-2040	Msa1456490:CDS	40.0%
	AGTAATTGTCATGGCAGTAG+TGG	+	tig0037458:2087-2106	Msa1456490:CDS	40.0%
	TACTATCAACCAGAGCAACA+TGG	+	tig0037458:2150-2169	Msa1456490:CDS	40.0%
	ATGCAAGCAAACCTTACTCA+TGG	+	tig0037458:2214-2233	Msa1456490:CDS	40.0%
!!!	TATGGTTGGACTGCTTTTTG+TGG	+	tig0037458:2246-2265	Msa1456490:CDS	40.0%
!!	TTCTTGTGGAAAGTGTCTCA+GGG	+	tig0037458:2293-2312	Msa1456490:CDS	40.0%
	ATGATGCAGGTGACAAATTC+AGG	+	tig0037458:2494-2513	Msa1456490:intron	40.0%
	TGATGCAGGTGACAAATTCA+GGG	+	tig0037458:2495-2514	Msa1456490:intron	40.0%
	TAGATCAATGCAGCAATGGA+GGG	+	tig0037458:2546-2565	Msa1456490:CDS	40.0%
!	AGCTATCAGTTTGTGGATTG+TGG	+	tig0037458:2644-2663	Msa1456490:CDS	40.0%
!	GCTATCAGTTTGTGGATTGT+GGG	+	tig0037458:2645-2664	Msa1456490:CDS	40.0%
!	AATGATGGAGAACAGAGGAT+TGG	-	tig0037458:2687-2706	Msa1456490:intergenic	40.0%
!!	CATCAGACCACTTTTATGGT+TGG	-	tig0037458:2966-2985	Msa1456490:intergenic	40.0%
	AAGCCTAGCGGTATTAACAT+TGG	+	tig0037458:1930-1949	Msa1456490:CDS	40.0%
	ACACCAATGTTAATACCGCT+AGG	-	tig0037458:1936-1955	Msa1456490:intergenic	40.0%
	ACAACAGTTGCAGAACAATG+CGG	+	tig0037458:1967-1986	Msa1456490:CDS	40.0%
	AACCTTTGTTGCAGCCAATA+CGG	+	tig0037458:2021-2040	Msa1456490:CDS	40.0%
	AGTAATTGTCATGGCAGTAG+TGG	+	tig0037458:2087-2106	Msa1456490:CDS	40.0%
	TACTATCAACCAGAGCAACA+TGG	+	tig0037458:2150-2169	Msa1456490:CDS	40.0%
	ATGCAAGCAAACCTTACTCA+TGG	+	tig0037458:2214-2233	Msa1456490:CDS	40.0%
!!!	TATGGTTGGACTGCTTTTTG+TGG	+	tig0037458:2246-2265	Msa1456490:CDS	40.0%
!!	TTCTTGTGGAAAGTGTCTCA+GGG	+	tig0037458:2293-2312	Msa1456490:CDS	40.0%
	ATGATGCAGGTGACAAATTC+AGG	+	tig0037458:2494-2513	Msa1456490:intron	40.0%
	TGATGCAGGTGACAAATTCA+GGG	+	tig0037458:2495-2514	Msa1456490:intron	40.0%
	TAGATCAATGCAGCAATGGA+GGG	+	tig0037458:2546-2565	Msa1456490:CDS	40.0%
!	AGCTATCAGTTTGTGGATTG+TGG	+	tig0037458:2644-2663	Msa1456490:CDS	40.0%
!	GCTATCAGTTTGTGGATTGT+GGG	+	tig0037458:2645-2664	Msa1456490:CDS	40.0%
!	AATGATGGAGAACAGAGGAT+TGG	-	tig0037458:2687-2706	Msa1456490:intergenic	40.0%
!!	CATCAGACCACTTTTATGGT+TGG	-	tig0037458:2966-2985	Msa1456490:intergenic	40.0%
	GACATATACCCATGTGCATG+CGG	-	tig0037458:1754-1773	None:intergenic	45.0%
!	GTCACGATATTGACTAGGCA+TGG	-	tig0037458:1785-1804	None:intergenic	45.0%
	GAACAATGCGGTAAACAAGC+TGG	+	tig0037458:1979-1998	Msa1456490:CDS	45.0%
	TGGCTGCAACAAAGGTTGTT+TGG	-	tig0037458:2018-2037	Msa1456490:intergenic	45.0%
!!	AACCGTATTGGCTGCAACAA+AGG	-	tig0037458:2026-2045	Msa1456490:intergenic	45.0%
	TTTGTTGCAGCCAATACGGT+TGG	+	tig0037458:2025-2044	Msa1456490:CDS	45.0%
	GGTACCACAGATGAATACTG+TGG	+	tig0037458:2051-2070	Msa1456490:CDS	45.0%
	AATTGTCATGGCAGTAGTGG+TGG	+	tig0037458:2090-2109	Msa1456490:CDS	45.0%
	ATCAACCAGAGCAACATGGA+TGG	+	tig0037458:2154-2173	Msa1456490:CDS	45.0%
	TCAACCAGAGCAACATGGAT+GGG	+	tig0037458:2155-2174	Msa1456490:CDS	45.0%
!	TACTTGCTACGCCATGAGTA+AGG	-	tig0037458:2228-2247	Msa1456490:intergenic	45.0%
	TACTCATGGCGTAGCAAGTA+TGG	+	tig0037458:2228-2247	Msa1456490:CDS	45.0%
!!	CTTCTTGTGGAAAGTGTCTC+AGG	+	tig0037458:2292-2311	Msa1456490:CDS	45.0%
	GTAGATCAATGCAGCAATGG+AGG	+	tig0037458:2545-2564	Msa1456490:CDS	45.0%
!	GCATCAATGATGGAGAACAG+AGG	-	tig0037458:2692-2711	Msa1456490:intergenic	45.0%
	GACATATACCCATGTGCATG+CGG	-	tig0037458:1754-1773	Msa1456490:intergenic	45.0%
!	GTCACGATATTGACTAGGCA+TGG	-	tig0037458:1785-1804	Msa1456490:intergenic	45.0%
	GAACAATGCGGTAAACAAGC+TGG	+	tig0037458:1979-1998	Msa1456490:CDS	45.0%
	TGGCTGCAACAAAGGTTGTT+TGG	-	tig0037458:2018-2037	Msa1456490:intergenic	45.0%
!!	AACCGTATTGGCTGCAACAA+AGG	-	tig0037458:2026-2045	Msa1456490:intergenic	45.0%
	TTTGTTGCAGCCAATACGGT+TGG	+	tig0037458:2025-2044	Msa1456490:CDS	45.0%
	GGTACCACAGATGAATACTG+TGG	+	tig0037458:2051-2070	Msa1456490:CDS	45.0%
	AATTGTCATGGCAGTAGTGG+TGG	+	tig0037458:2090-2109	Msa1456490:CDS	45.0%
	ATCAACCAGAGCAACATGGA+TGG	+	tig0037458:2154-2173	Msa1456490:CDS	45.0%
	TCAACCAGAGCAACATGGAT+GGG	+	tig0037458:2155-2174	Msa1456490:CDS	45.0%
!	TACTTGCTACGCCATGAGTA+AGG	-	tig0037458:2228-2247	Msa1456490:intergenic	45.0%
	TACTCATGGCGTAGCAAGTA+TGG	+	tig0037458:2228-2247	Msa1456490:CDS	45.0%
!!	CTTCTTGTGGAAAGTGTCTC+AGG	+	tig0037458:2292-2311	Msa1456490:CDS	45.0%
	GTAGATCAATGCAGCAATGG+AGG	+	tig0037458:2545-2564	Msa1456490:CDS	45.0%
!	GCATCAATGATGGAGAACAG+AGG	-	tig0037458:2692-2711	Msa1456490:intergenic	45.0%
	ATATACCCATGTGCATGCGG+CGG	-	tig0037458:1751-1770	None:intergenic	50.0%
	CAATGCGGTAAACAAGCTGG+AGG	+	tig0037458:1982-2001	Msa1456490:CDS	50.0%
	TGGTACCACACCAACCGTAT+TGG	-	tig0037458:2038-2057	Msa1456490:intergenic	50.0%
	CGGACCACAGTATTCATCTG+TGG	-	tig0037458:2058-2077	Msa1456490:intergenic	50.0%
	AAGTCCCATCCATGTTGCTC+TGG	-	tig0037458:2162-2181	Msa1456490:intergenic	50.0%
	CATGGCGTAGCAAGTATGGT+TGG	+	tig0037458:2232-2251	Msa1456490:CDS	50.0%
!!!	ACTGCTTTTTGTGGCCCTGT+TGG	+	tig0037458:2255-2274	Msa1456490:CDS	50.0%
	GCAGGTGACAAATTCAGGGA+CGG	+	tig0037458:2499-2518	Msa1456490:intron	50.0%
	CAGGTGACAAATTCAGGGAC+GGG	+	tig0037458:2500-2519	Msa1456490:intron	50.0%
	TCAATGCAGCAATGGAGGGT+TGG	+	tig0037458:2550-2569	Msa1456490:CDS	50.0%
	CAGCAATGGAGGGTTGGATT+TGG	+	tig0037458:2556-2575	Msa1456490:CDS	50.0%
	GGAGGGTTGGATTTGGATGT+AGG	+	tig0037458:2563-2582	Msa1456490:CDS	50.0%
	AGAATCGACACAGATGGCAG+AGG	+	tig0037458:2596-2615	Msa1456490:CDS	50.0%
	AGATGGCAGAGGATACCAAC+AGG	+	tig0037458:2607-2626	Msa1456490:CDS	50.0%
	GATGGCAGAGGATACCAACA+GGG	+	tig0037458:2608-2627	Msa1456490:CDS	50.0%
!	TTACTACAGCACTGAGGCAG+AGG	-	tig0037458:2739-2758	Msa1456490:intergenic	50.0%
	ATATACCCATGTGCATGCGG+CGG	-	tig0037458:1751-1770	Msa1456490:intergenic	50.0%
	CAATGCGGTAAACAAGCTGG+AGG	+	tig0037458:1982-2001	Msa1456490:CDS	50.0%
	TGGTACCACACCAACCGTAT+TGG	-	tig0037458:2038-2057	Msa1456490:intergenic	50.0%
	CGGACCACAGTATTCATCTG+TGG	-	tig0037458:2058-2077	Msa1456490:intergenic	50.0%
	AAGTCCCATCCATGTTGCTC+TGG	-	tig0037458:2162-2181	Msa1456490:intergenic	50.0%
	CATGGCGTAGCAAGTATGGT+TGG	+	tig0037458:2232-2251	Msa1456490:CDS	50.0%
!!!	ACTGCTTTTTGTGGCCCTGT+TGG	+	tig0037458:2255-2274	Msa1456490:CDS	50.0%
	GCAGGTGACAAATTCAGGGA+CGG	+	tig0037458:2499-2518	Msa1456490:intron	50.0%
	CAGGTGACAAATTCAGGGAC+GGG	+	tig0037458:2500-2519	Msa1456490:intron	50.0%
	TCAATGCAGCAATGGAGGGT+TGG	+	tig0037458:2550-2569	Msa1456490:CDS	50.0%
	CAGCAATGGAGGGTTGGATT+TGG	+	tig0037458:2556-2575	Msa1456490:CDS	50.0%
	GGAGGGTTGGATTTGGATGT+AGG	+	tig0037458:2563-2582	Msa1456490:CDS	50.0%
	AGAATCGACACAGATGGCAG+AGG	+	tig0037458:2596-2615	Msa1456490:CDS	50.0%
	AGATGGCAGAGGATACCAAC+AGG	+	tig0037458:2607-2626	Msa1456490:CDS	50.0%
	GATGGCAGAGGATACCAACA+GGG	+	tig0037458:2608-2627	Msa1456490:CDS	50.0%
!	TTACTACAGCACTGAGGCAG+AGG	-	tig0037458:2739-2758	Msa1456490:intergenic	50.0%
!	TGCAGCCAATACGGTTGGTG+TGG	+	tig0037458:2030-2049	Msa1456490:CDS	55.0%
	TGTCATGGCAGTAGTGGTGG+TGG	+	tig0037458:2093-2112	Msa1456490:CDS	55.0%
	CTTGACCACGAGGTCCAACA+GGG	-	tig0037458:2272-2291	Msa1456490:intergenic	55.0%
	CCACAAGAAGCTTGACCACG+AGG	-	tig0037458:2282-2301	Msa1456490:intergenic	55.0%
	CCTCGTGGTCAAGCTTCTTG+TGG	+	tig0037458:2279-2298	Msa1456490:CDS	55.0%
!	AAATTCAGGGACGGGAGCAC+AGG	+	tig0037458:2508-2527	Msa1456490:CDS	55.0%
	CTGAGGCAGAGGAAGCAGAT+TGG	-	tig0037458:2728-2747	Msa1456490:intergenic	55.0%
!	GGTCTGATGTGATGGAGCTC+CGG	+	tig0037458:2977-2996	Msa1456490:three_prime_UTR	55.0%
!	TGATGTGATGGAGCTCCGGT+GGG	+	tig0037458:2981-3000	Msa1456490:three_prime_UTR	55.0%
!	TGCAGCCAATACGGTTGGTG+TGG	+	tig0037458:2030-2049	Msa1456490:CDS	55.0%
	TGTCATGGCAGTAGTGGTGG+TGG	+	tig0037458:2093-2112	Msa1456490:CDS	55.0%
	CTTGACCACGAGGTCCAACA+GGG	-	tig0037458:2272-2291	Msa1456490:intergenic	55.0%
	CCACAAGAAGCTTGACCACG+AGG	-	tig0037458:2282-2301	Msa1456490:intergenic	55.0%
	CCTCGTGGTCAAGCTTCTTG+TGG	+	tig0037458:2279-2298	Msa1456490:CDS	55.0%
!	AAATTCAGGGACGGGAGCAC+AGG	+	tig0037458:2508-2527	Msa1456490:CDS	55.0%
	CTGAGGCAGAGGAAGCAGAT+TGG	-	tig0037458:2728-2747	Msa1456490:intergenic	55.0%
!	GGTCTGATGTGATGGAGCTC+CGG	+	tig0037458:2977-2996	Msa1456490:three_prime_UTR	55.0%
!	TGATGTGATGGAGCTCCGGT+GGG	+	tig0037458:2981-3000	Msa1456490:three_prime_UTR	55.0%
	GCTTGACCACGAGGTCCAAC+AGG	-	tig0037458:2273-2292	Msa1456490:intergenic	60.0%
!	CTGATGTGATGGAGCTCCGG+TGG	+	tig0037458:2980-2999	Msa1456490:three_prime_UTR	60.0%
	ATGGAGCTCCGGTGGGATCA+CGG	+	tig0037458:2988-3007	Msa1456490:three_prime_UTR	60.0%
	GCTTGACCACGAGGTCCAAC+AGG	-	tig0037458:2273-2292	Msa1456490:intergenic	60.0%
!	CTGATGTGATGGAGCTCCGG+TGG	+	tig0037458:2980-2999	Msa1456490:three_prime_UTR	60.0%
	ATGGAGCTCCGGTGGGATCA+CGG	+	tig0037458:2988-3007	Msa1456490:three_prime_UTR	60.0%
	TGTGGCCCTGTTGGACCTCG+TGG	+	tig0037458:2264-2283	Msa1456490:CDS	65.0%
	ATCACGGTGCGGCCTCACTC+TGG	+	tig0037458:3004-3023	Msa1456490:three_prime_UTR	65.0%
	TGTGGCCCTGTTGGACCTCG+TGG	+	tig0037458:2264-2283	Msa1456490:CDS	65.0%
	ATCACGGTGCGGCCTCACTC+TGG	+	tig0037458:3004-3023	Msa1456490:three_prime_UTR	65.0%
	GCTCCGGTGGGATCACGGTG+CGG	+	tig0037458:2993-3012	Msa1456490:three_prime_UTR	70.0%
	AGGCCGCACCGTGATCCCAC+CGG	-	tig0037458:2999-3018	Msa1456490:intergenic	70.0%
	GCTCCGGTGGGATCACGGTG+CGG	+	tig0037458:2993-3012	Msa1456490:three_prime_UTR	70.0%
	AGGCCGCACCGTGATCCCAC+CGG	-	tig0037458:2999-3018	Msa1456490:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
tig0037458	gene	1748	3036	1748	ID=Msa1456490;Name=Msa1456490
tig0037458	mRNA	1748	3036	1748	ID=Msa1456490-mRNA-1;Parent=Msa1456490;Name=Msa1456490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=165\|1\|1\|1\|1\|1\|2\|315\|206
tig0037458	exon	1748	2314	1748	ID=Msa1456490-mRNA-1:exon:20727;Parent=Msa1456490-mRNA-1
tig0037458	exon	2503	3036	2503	ID=Msa1456490-mRNA-1:exon:20728;Parent=Msa1456490-mRNA-1
tig0037458	five_prime_UTR	1748	1912	1748	ID=Msa1456490-mRNA-1:five_prime_utr;Parent=Msa1456490-mRNA-1
tig0037458	CDS	1913	2314	1913	ID=Msa1456490-mRNA-1:cds;Parent=Msa1456490-mRNA-1
tig0037458	CDS	2503	2721	2503	ID=Msa1456490-mRNA-1:cds;Parent=Msa1456490-mRNA-1
tig0037458	three_prime_UTR	2722	3036	2722	ID=Msa1456490-mRNA-1:three_prime_utr;Parent=Msa1456490-mRNA-1

Gene Sequence

>Msa1456490

ATGGGAAAATTTGGAGTAAGCCTAGCGGTATTAACATTGGTGTGTTTGACTGCAACAACAGTTGCAGAACAATGCGGTAAACAAGCTGGAGGAAAAACATGTCCAAACAACCTTTGTTGCAGCCAATACGGTTGGTGTGGTACCACAGATGAATACTGTGGTCCGAACTGTCAGAGTAATTGTCATGGCAGTAGTGGTGGTGGTGAAAGTGCTTCTAATGTTCGTGCTACTTATCATTACTATCAACCAGAGCAACATGGATGGGACTTAAACGCTGTAAGTGCTTATTGTTCAACTTGGGATGCAAGCAAACCTTACTCATGGCGTAGCAAGTATGGTTGGACTGCTTTTTGTGGCCCTGTTGGACCTCGTGGTCAAGCTTCTTGTGGAAAGTGTCTCAGGGTGACAAATTCAGGGACGGGAGCACAGGAAACAGTGAGAATTGTAGATCAATGCAGCAATGGAGGGTTGGATTTGGATGTAGGAGTGTTTAACAGAATCGACACAGATGGCAGAGGATACCAACAGGGACATCTTATTGTAAGCTATCAGTTTGTGGATTGTGGGAATGAGCTAGACATGACCAATCCTCTGTTCTCCATCATTGATGCTGAACAATAA

Protein sequence

>Msa1456490

MGKFGVSLAVLTLVCLTATTVAEQCGKQAGGKTCPNNLCCSQYGWCGTTDEYCGPNCQSNCHGSSGGGESASNVRATYHYYQPEQHGWDLNAVSAYCSTWDASKPYSWRSKYGWTAFCGPVGPRGQASCGKCLRVTNSGTGAQETVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVSYQFVDCGNELDMTNPLFSIIDAEQ*